spring cleaning

1 files changed, 362 insertions, 0 deletions

diff --git a/src/hypergraph.cc b/src/hypergraph.cc
new file mode 100644
index 0000000..40bcc64
--- /dev/null
+++ b/src/hypergraph.cc
@@ -0,0 +1,362 @@
+#include "hypergraph.hh"
+
+namespace Hg {
+
+template<typename Semiring> void
+init(const list<Node*>& nodes, const list<Node*>::iterator root, const Semiring& semiring)
+{
+  for (const auto it: nodes)
+    it->score = semiring.null;
+  (**root).score = semiring.one;
+}
+
+void
+reset(const list<Node*> nodes, const vector<Edge*> edges)
+{
+  for (const auto it: nodes)
+    it->mark = 0;
+  for (auto it: edges)
+    it->mark = 0;
+}
+
+void
+topological_sort(list<Node*>& nodes, const list<Node*>::iterator root)
+{
+  auto p = root;
+  auto to = nodes.begin();
+  while (to != nodes.end()) {
+    if ((**p).is_marked()) {
+      for (const auto e: (**p).outgoing) { // explore edges
+        e->mark++;
+        if (e->is_marked()) {
+          e->head->mark++;
+        }
+      }
+    }
+    if ((**p).is_marked()) {
+      nodes.splice(to, nodes, p);
+      to++;
+      p = to;
+    } else {
+      ++p;
+    }
+  }
+}
+
+void
+viterbi(Hypergraph& hg)
+{
+  list<Node*>::iterator root = \
+    find_if(hg.nodes.begin(), hg.nodes.end(), \
+    [](Node* n) { return n->incoming.size() == 0; });
+
+  Hg::topological_sort(hg.nodes, root);
+  Semiring::Viterbi<score_t> semiring;
+  Hg::init(hg.nodes, root, semiring);
+
+  for (const auto n: hg.nodes) {
+    for (const auto e: n->incoming) {
+      score_t s = semiring.one;
+      for (const auto m: e->tails) {
+        s = semiring.multiply(s, m->score);
+      }
+      n->score = semiring.add(n->score, semiring.multiply(s, e->score));
+    }
+  }
+}
+
+void
+viterbi_path(Hypergraph& hg, Path& p)
+{
+  list<Node*>::iterator root = \
+    find_if(hg.nodes.begin(), hg.nodes.end(), \
+    [](Node* n) { return n->incoming.size() == 0; });
+  //list<Node*>::iterator root = hg.nodes.begin();
+
+  Hg::topological_sort(hg.nodes, root);
+  //  ^^^ FIXME do I need to do this when reading from file?
+  Semiring::Viterbi<score_t> semiring;
+  Hg::init(hg.nodes, root, semiring);
+
+  for (auto n: hg.nodes) {
+    Edge* best_edge;
+    bool best = false;
+    for (auto e: n->incoming) {
+      score_t s = semiring.one;
+      for (auto m: e->tails) {
+        s = semiring.multiply(s, m->score);
+      }
+      if (n->score < semiring.multiply(s, e->score)) { // find max
+        best_edge = e;
+        best = true;
+      }
+      n->score = semiring.add(n->score, semiring.multiply(s, e->score));
+    }
+    if (best)
+      p.push_back(best_edge);
+  }
+}
+
+
+void
+derive(const Path& p, const Node* cur, vector<string>& carry)
+{
+  Edge* next;
+  for (auto it: p) {
+    if (it->head->symbol == cur->symbol &&
+        it->head->left == cur->left &&
+        it->head->right == cur->right) {
+      next = it;
+    }
+  } // FIXME this is probably not so good
+
+  unsigned j = 0;
+  for (auto it: next->rule->target) {
+    if (it->type() == G::NON_TERMINAL) {
+      derive(p, next->tails[next->rule->order[j]], carry);
+      j++;
+    } else {
+      carry.push_back(it->symbol());
+    }
+  }
+}
+
+namespace io {
+
+void
+read(Hypergraph& hg, vector<G::Rule*>& rules, G::Vocabulary& vocab, const string& fn)
+{
+  ifstream ifs(fn);
+  size_t i = 0, r, n, e;
+  msgpack::unpacker pac;
+  while(true) {
+    pac.reserve_buffer(32*1024);
+    size_t bytes = ifs.readsome(pac.buffer(), pac.buffer_capacity());
+    pac.buffer_consumed(bytes);
+    msgpack::unpacked result;
+    while(pac.next(&result)) {
+      msgpack::object o = result.get();
+      if (i ==  0) {
+        o.convert(&r);
+      } else  if (i == 1) {
+        o.convert(&n);
+      } else  if (i == 2) {
+        o.convert(&e);
+      } else if (i > 2 && i <= r+2) {
+        string s;
+        o.convert(&s);
+        G::Rule* rule = new G::Rule;
+        G::Rule::from_s(rule, s, vocab);
+        rules.push_back(rule);
+      } else if (i > r+2 && i <= r+n+2) {
+        Node* n = new Node;
+        o.convert(n);
+        hg.nodes.push_back(n);
+        hg.nodes_by_id[n->id] = n;
+      } else if (i > n+2 && i <= r+n+e+2) {
+        Edge* e = new Edge;
+        e->arity = 0;
+        o.convert(e);
+        e->head = hg.nodes_by_id[e->head_id_];
+        hg.edges.push_back(e);
+        hg.nodes_by_id[e->head_id_]->incoming.push_back(e);
+        e->arity = 0;
+        for (auto it = e->tails_ids_.begin(); it != e->tails_ids_.end(); it++) {
+          hg.nodes_by_id[*it]->outgoing.push_back(e);
+          e->tails.push_back(hg.nodes_by_id[*it]);
+          e->arity++;
+        }
+        e->rule = rules[e->rule_id_];
+      } else {
+        // ERROR
+      }
+      i++;
+    }
+    if (!bytes) break;
+  }
+}
+
+void
+write(Hypergraph& hg, vector<G::Rule*>& rules, const string& fn) // FIXME
+{
+  FILE* file = fopen(fn.c_str(), "wb");
+  msgpack::fbuffer fbuf(file);
+  msgpack::pack(fbuf, rules.size());
+  msgpack::pack(fbuf, hg.nodes.size());
+  msgpack::pack(fbuf, hg.edges.size());
+  for (auto it = rules.cbegin(); it != rules.cend(); it++)
+    msgpack::pack(fbuf, **it);
+  for (auto it = hg.nodes.cbegin(); it != hg.nodes.cend(); it++)
+    msgpack::pack(fbuf, **it);
+  for (auto it = hg.edges.cbegin(); it != hg.edges.cend(); it++)
+    msgpack::pack(fbuf, **it);
+  fclose(file);
+}
+
+void
+manual(Hypergraph& hg, vector<G::Rule*>& rules, G::Vocabulary& vocab)
+{
+  // nodes
+  Node* a = new Node; a->id = 0; a->symbol = "root"; a->left = -1;    a->right = -1; a->mark = 0;
+  hg.nodes.push_back(a); hg.nodes_by_id[a->id] = a;
+  Node* b = new Node; b->id = 1; b->symbol = "NP";   b->left = 0;     b->right = 1;  b->mark = 0;
+  hg.nodes.push_back(b); hg.nodes_by_id[b->id] = b;
+  Node* c = new Node; c->id = 2; c->symbol = "V";    c->left = 1;     c->right = 2;  c->mark = 0;
+  hg.nodes.push_back(c); hg.nodes_by_id[c->id] = c;
+  Node* d = new Node; d->id = 3; d->symbol = "JJ";   d->left = 3;     d->right = 4;  d->mark = 0;
+  hg.nodes.push_back(d); hg.nodes_by_id[d->id] = d;
+  Node* e = new Node; e->id = 4; e->symbol = "NN";   e->left = 3;     e->right = 5;  e->mark = 0;
+  hg.nodes.push_back(e); hg.nodes_by_id[e->id] = e;
+  Node* f = new Node; f->id = 5; f->symbol = "NP";   f->left = 2;     f->right = 5;  f->mark = 0;
+  hg.nodes.push_back(f); hg.nodes_by_id[f->id] = f;
+  Node* g = new Node; g->id = 6; g->symbol = "NP";   g->left = 1;     g->right = 5;  g->mark = 0;
+  hg.nodes.push_back(g); hg.nodes_by_id[g->id] = g;
+  Node* h = new Node; h->id = 7; h->symbol = "S";    h->left = 0;     h->right = 6;  h->mark = 0;
+  hg.nodes.push_back(h); hg.nodes_by_id[h->id] = h;
+
+  // rules
+  vector<string> rule_strs;
+  rule_strs.push_back("[NP] ||| ich ||| i ||| ||| ");
+  rule_strs.push_back("[V] ||| sah ||| saw ||| ||| ");
+  rule_strs.push_back("[JJ] ||| kleines ||| small ||| ||| ");
+  rule_strs.push_back("[JJ] ||| kleines ||| little ||| ||| ");
+  rule_strs.push_back("[NN] ||| kleines haus ||| small house ||| ||| ");
+  rule_strs.push_back("[NN] ||| kleines haus ||| little house ||| ||| ");
+  rule_strs.push_back("[NN] ||| [JJ,1] haus ||| [JJ,1] shell ||| ||| ");
+  rule_strs.push_back("[NN] ||| [JJ,1] haus ||| [JJ,1] house ||| ||| ");
+  rule_strs.push_back("[NP] ||| ein [NN,1] ||| a [NN,1] ||| ||| ");
+  rule_strs.push_back("[VP] ||| [V,1] [NP,2] ||| [V,1] [NP,2] ||| ||| ");
+  rule_strs.push_back("[S] ||| [NP,1] [VP,2] ||| [NP,1] [VP,2] ||| ||| ");
+
+  for (auto it: rule_strs) {
+    rules.push_back(new G::Rule(it, vocab));
+    rules.back()->f = new Sv::SparseVector<string, score_t>();
+  }
+
+  // edges
+  Edge* q = new Edge; q->head = hg.nodes_by_id[1]; q->tails.push_back(hg.nodes_by_id[0]); q->score = 0.367879441171;
+  q->arity = 1; q->mark = 0;
+  hg.edges.push_back(q);
+  hg.nodes_by_id[1]->incoming.push_back(q);
+  hg.nodes_by_id[0]->outgoing.push_back(q);
+  q->rule = rules[0];
+
+  Edge* p = new Edge; p->head = hg.nodes_by_id[2]; p->tails.push_back(hg.nodes_by_id[0]); p->score = 0.606530659713;
+  p->arity = 1; p->mark = 0;
+  hg.edges.push_back(p);
+  hg.nodes_by_id[2]->incoming.push_back(p);
+  hg.nodes_by_id[0]->outgoing.push_back(p);
+  p->rule = rules[1];
+
+  Edge* r = new Edge; r->head = hg.nodes_by_id[3]; r->tails.push_back(hg.nodes_by_id[0]); r->score = 1.0;
+  r->arity = 1; r->mark = 0;
+  hg.edges.push_back(r);
+  hg.nodes_by_id[3]->incoming.push_back(r);
+  hg.nodes_by_id[0]->outgoing.push_back(r);
+  r->rule = rules[2];
+
+  Edge* s = new Edge; s->head = hg.nodes_by_id[3]; s->tails.push_back(hg.nodes_by_id[0]); s->score = 1.0;
+  s->arity = 1; s->mark = 0;
+  hg.edges.push_back(s);
+  hg.nodes_by_id[3]->incoming.push_back(s);
+  hg.nodes_by_id[0]->outgoing.push_back(s);
+  s->rule = rules[3];
+
+  Edge* t = new Edge; t->head = hg.nodes_by_id[4]; t->tails.push_back(hg.nodes_by_id[0]); t->score = 1.0;
+  t->arity = 1; t->mark = 0;
+  hg.edges.push_back(t);
+  hg.nodes_by_id[4]->incoming.push_back(t);
+  hg.nodes_by_id[0]->outgoing.push_back(t);
+  t->rule = rules[4];
+
+  Edge* u = new Edge; u->head = hg.nodes_by_id[4]; u->tails.push_back(hg.nodes_by_id[0]); u->score = 1.0;
+  u->arity = 1; u->mark = 0;
+  hg.edges.push_back(u);
+  hg.nodes_by_id[4]->incoming.push_back(u);
+  hg.nodes_by_id[0]->outgoing.push_back(u);
+  u->rule = rules[5];
+
+  Edge* v = new Edge; v->head = hg.nodes_by_id[4]; v->tails.push_back(hg.nodes_by_id[3]); v->score = 1.0;
+  v->arity = 1; v->mark = 0;
+  hg.edges.push_back(v);
+  hg.nodes_by_id[4]->incoming.push_back(v);
+  hg.nodes_by_id[3]->outgoing.push_back(v);
+  v->rule = rules[6];
+
+  Edge* w = new Edge; w->head = hg.nodes_by_id[4]; w->tails.push_back(hg.nodes_by_id[3]); w->score = 2.71828182846;
+  w->arity = 1; w->mark = 0;
+  hg.edges.push_back(w);
+  hg.nodes_by_id[4]->incoming.push_back(w);
+  hg.nodes_by_id[3]->outgoing.push_back(w);
+  w->rule = rules[7];
+
+  Edge* x = new Edge; x->head = hg.nodes_by_id[5]; x->tails.push_back(hg.nodes_by_id[4]); x->score = 1.0;
+  x->arity = 1; x->mark = 0;
+  hg.edges.push_back(x);
+  hg.nodes_by_id[5]->incoming.push_back(x);
+  hg.nodes_by_id[4]->outgoing.push_back(x);
+  x->rule = rules[8];
+
+  Edge* y = new Edge; y->head = hg.nodes_by_id[6]; y->tails.push_back(hg.nodes_by_id[2]); y->tails.push_back(hg.nodes_by_id[5]); y->score = 1.0;
+  y->arity = 2; y->mark = 0;
+  hg.edges.push_back(y);
+  hg.nodes_by_id[6]->incoming.push_back(y);
+  hg.nodes_by_id[2]->outgoing.push_back(y);
+  hg.nodes_by_id[5]->outgoing.push_back(y);
+  y->rule = rules[9];
+
+  Edge* z = new Edge; z->head = hg.nodes_by_id[7]; z->tails.push_back(hg.nodes_by_id[1]); z->tails.push_back(hg.nodes_by_id[6]); z->score = 1.0;
+  z->arity = 2; z->mark = 0;
+  hg.edges.push_back(z);
+  hg.nodes_by_id[7]->incoming.push_back(z);
+  hg.nodes_by_id[1]->outgoing.push_back(z);
+  hg.nodes_by_id[6]->outgoing.push_back(z);
+  z->rule = rules[10];
+}
+
+} // namespace Hg::io
+
+/*
+ * Hg::Node
+ *
+ */
+ostream&
+operator<<(ostream& os, const Node& n)
+{
+  os << \
+    "Node<id=" << n.id << \
+    ", symbol='" << n.symbol << "'" << \
+    ", span=(" << n.left << "," << n.right << ")" \
+    ", score=" << n.score << \
+    ", incoming:" << n.incoming.size() << \
+    ", outgoing:" << n.outgoing.size() << \
+    ", mark=" << n.mark << ">";
+  return os;
+}
+
+/*
+ * Hg::Edge
+ *
+ */
+ostream&
+operator<<(ostream& os, const Edge& e)
+{
+  ostringstream _;
+  for (auto it: e.tails) {
+    _ << it->id;
+    if (it != e.tails.back()) _ << ",";
+  }
+  os << \
+    "Edge<head=" << e.head->id << \
+    ", tails=[" << _.str() << "]" \
+    ", score=" << e.score << \
+    ", rule:'";
+  e.rule->escaped(os);
+  os << "', f=" << "TODO" << \
+    ", arity=" << e.arity << \
+    ", mark=" << e.mark << ">";
+  return os;
+}
+
+} // namespace Hg
+