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#include <gtest/gtest.h>
#include <memory>
#include <string>
#include "alignment.h"
using namespace std;
using namespace ::testing;
namespace {
class AlignmentTest : public Test {
protected:
virtual void SetUp() {
alignment = make_shared<Alignment>("sample_alignment.txt");
}
shared_ptr<Alignment> alignment;
};
TEST_F(AlignmentTest, TestGetLinks) {
vector<pair<int, int> > expected_links = {
make_pair(0, 0), make_pair(1, 1), make_pair(2, 2)
};
EXPECT_EQ(expected_links, alignment->GetLinks(0));
expected_links = {make_pair(1, 0), make_pair(2, 1)};
EXPECT_EQ(expected_links, alignment->GetLinks(1));
}
} // namespace
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