1 files changed, 14 insertions, 0 deletions
diff --git a/utils/alignment_pharaoh.h b/utils/alignment_pharaoh.h
new file mode 100644
index 00000000..d111c8bf
--- /dev/null
+++ b/utils/alignment_pharaoh.h
@@ -0,0 +1,14 @@
+#ifndef _PHARAOH_ALIGNMENT_H_
+#define _PHARAOH_ALIGNMENT_H_
+
+#include <string>
+#include <iostream>
+#include <boost/shared_ptr.hpp>
+#include "array2d.h"
+
+struct AlignmentPharaoh {
+  static boost::shared_ptr<Array2D<bool> > ReadPharaohAlignmentGrid(const std::string& al);
+  static void SerializePharaohFormat(const Array2D<bool>& alignment, std::ostream* out);
+};
+
+#endif