diff options
Diffstat (limited to 'rampion/rampion.pl')
| -rwxr-xr-x | rampion/rampion.pl | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/rampion/rampion.pl b/rampion/rampion.pl index fda2bac2..9884f453 100755 --- a/rampion/rampion.pl +++ b/rampion/rampion.pl @@ -301,11 +301,15 @@ while (1){ my $score = 0; my $icc = 0; my $inweights="$dir/weights.$im1"; + my $outweights="$dir/weights.$iteration"; $cmd="$MAPINPUT $dir/hgs > $dir/agenda.$im1"; print STDERR "COMMAND:\n$cmd\n"; check_call($cmd); - die "PLEASE IMPL"; + $cmd="$MAPPER $refs_comma_sep -m $metric -i $dir/agenda.$im1 -w $inweights > $outweights"; + check_call($cmd); + $lastWeightsFile = $outweights; $iteration++; + `rm hgs/*.gz`; print STDERR "\n==========\n"; } |