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-rw-r--r--python/src/sa/_sa.c2719
-rw-r--r--python/src/sa/data_array.pxi17
-rw-r--r--python/src/sa/suffix_array.pxi9
3 files changed, 1495 insertions, 1250 deletions
diff --git a/python/src/sa/_sa.c b/python/src/sa/_sa.c
index d1cc55c0..5507cd15 100644
--- a/python/src/sa/_sa.c
+++ b/python/src/sa/_sa.c
@@ -1,4 +1,4 @@
-/* Generated by Cython 0.17 on Thu Sep 6 14:37:00 2012 */
+/* Generated by Cython 0.17 on Thu Sep 6 16:40:54 2012 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
@@ -701,8 +701,8 @@ struct __pyx_obj_3_sa_LCP {
* from libc.string cimport memset, strcpy
*
* cdef class DataArray: # <<<<<<<<<<<<<<
- * cdef word2id
- * cdef id2word
+ * cdef public word2id
+ * cdef public id2word
*/
struct __pyx_obj_3_sa_DataArray {
PyObject_HEAD
@@ -837,7 +837,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_6_genexpr {
};
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":73
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":74
* def read_bitext(self, char* filename, int side):
* with gzip_or_text(filename) as fp:
* data = (line.split(' ||| ')[side] for line in fp) # <<<<<<<<<<<<<<
@@ -889,7 +889,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_16___iter__ {
};
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":71
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":72
* self.read_text_data(fp)
*
* def read_bitext(self, char* filename, int side): # <<<<<<<<<<<<<<
@@ -1344,8 +1344,8 @@ static struct __pyx_vtabstruct_3_sa_StringMap *__pyx_vtabptr_3_sa_StringMap;
* from libc.string cimport memset, strcpy
*
* cdef class DataArray: # <<<<<<<<<<<<<<
- * cdef word2id
- * cdef id2word
+ * cdef public word2id
+ * cdef public id2word
*/
struct __pyx_vtabstruct_3_sa_DataArray {
@@ -2306,9 +2306,9 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
static Py_ssize_t __pyx_pf_3_sa_9DataArray_2__len__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_4get_sentence_id(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_6get_sentence(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_8get_sentence_position(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_loc); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_10get_id(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_word); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_12get_word(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_id); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_8get_id(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_word); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_10__getitem__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_loc); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_12get_sentence_bounds(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_loc); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_14write_text(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_16read_text(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_11read_bitext_genexpr(PyObject *__pyx_self); /* proto */
@@ -2318,9 +2318,21 @@ static PyObject *__pyx_pf_3_sa_9DataArray_22read_binary(struct __pyx_obj_3_sa_Da
static PyObject *__pyx_pf_3_sa_9DataArray_24write_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_26write_enhanced_handle(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_f); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_28write_enhanced(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_7word2id___get__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
+static int __pyx_pf_3_sa_9DataArray_7word2id_2__set__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static int __pyx_pf_3_sa_9DataArray_7word2id_4__del__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_7id2word___get__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
+static int __pyx_pf_3_sa_9DataArray_7id2word_2__set__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static int __pyx_pf_3_sa_9DataArray_7id2word_4__del__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_4data___get__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
static int __pyx_pf_3_sa_9DataArray_4data_2__set__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
static int __pyx_pf_3_sa_9DataArray_4data_4__del__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_7sent_id___get__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
+static int __pyx_pf_3_sa_9DataArray_7sent_id_2__set__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static int __pyx_pf_3_sa_9DataArray_7sent_id_4__del__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_10sent_index___get__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
+static int __pyx_pf_3_sa_9DataArray_10sent_index_2__set__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
+static int __pyx_pf_3_sa_9DataArray_10sent_index_4__del__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_3_sa_9Alignment_unlink(CYTHON_UNUSED struct __pyx_obj_3_sa_Alignment *__pyx_v_self, PyObject *__pyx_v_link); /* proto */
static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_Alignment *__pyx_v_self, int __pyx_v_sent_id); /* proto */
static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text); /* proto */
@@ -2413,16 +2425,13 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_sa_Precomputation *__pyx_v_self, PyObject *__pyx_v_stats, struct __pyx_obj_3_sa_SuffixArray *__pyx_v_sarray); /* proto */
static int __pyx_pf_3_sa_11SuffixArray___cinit__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text, PyObject *__pyx_v_side); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_2__getitem__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_4get_sentence_id(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_6get_sentence(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_8get_sentence_position(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_loc); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_side); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, int __pyx_v_i, int __pyx_v_j, int __pyx_v_h, struct __pyx_obj_3_sa_IntList *__pyx_v_isa, PyObject *__pyx_v_pad); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_14write_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_16read_binary(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_18write_binary(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_20write_enhanced(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_22lookup(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_word, int __pyx_v_offset, int __pyx_v_low, int __pyx_v_high); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_side); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, int __pyx_v_i, int __pyx_v_j, int __pyx_v_h, struct __pyx_obj_3_sa_IntList *__pyx_v_isa, PyObject *__pyx_v_pad); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_8write_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_binary(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_12write_binary(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_14write_enhanced(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_word, int __pyx_v_offset, int __pyx_v_low, int __pyx_v_high); /* proto */
static int __pyx_pf_3_sa_8TrieNode___cinit__(struct __pyx_obj_3_sa_TrieNode *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_3_sa_8TrieNode_8children___get__(struct __pyx_obj_3_sa_TrieNode *__pyx_v_self); /* proto */
static int __pyx_pf_3_sa_8TrieNode_8children_2__set__(struct __pyx_obj_3_sa_TrieNode *__pyx_v_self, PyObject *__pyx_v_value); /* proto */
@@ -2515,13 +2524,12 @@ static char __pyx_k_85[] = "RANK %d\tCOUNT, COST: %d %d\tCUMUL: %d, %d";
static char __pyx_k_86[] = "Precomputed collocations for %d patterns out of %d possible (upper bound %d)";
static char __pyx_k_87[] = "Precomputed inverted index for %d patterns ";
static char __pyx_k_88[] = "Precomputation took %f seconds";
-static char __pyx_k_89[] = "get_sentence_position";
-static char __pyx_k_90[] = " Bucket sort took %f seconds";
-static char __pyx_k_91[] = " Refining, sort depth = %d";
-static char __pyx_k_92[] = " Refinement took %f seconds";
-static char __pyx_k_93[] = " Finalizing sort...";
-static char __pyx_k_95[] = "Suffix array construction took %f seconds";
-static char __pyx_k_96[] = "Unexpected condition found in q3sort: sort from %d to %d";
+static char __pyx_k_89[] = " Bucket sort took %f seconds";
+static char __pyx_k_90[] = " Refining, sort depth = %d";
+static char __pyx_k_91[] = " Refinement took %f seconds";
+static char __pyx_k_92[] = " Finalizing sort...";
+static char __pyx_k_94[] = "Suffix array construction took %f seconds";
+static char __pyx_k_95[] = "Unexpected condition found in q3sort: sort from %d to %d";
static char __pyx_k__0[] = "0";
static char __pyx_k__1[] = "1";
static char __pyx_k__e[] = "e";
@@ -2531,42 +2539,42 @@ static char __pyx_k__i[] = "i";
static char __pyx_k__j[] = "j";
static char __pyx_k__r[] = "r";
static char __pyx_k__w[] = "w";
-static char __pyx_k_101[] = "Sampling strategy: uniform, max sample size = %d";
-static char __pyx_k_102[] = "Sampling strategy: no sampling";
-static char __pyx_k_104[] = "require_aligned_terminal";
-static char __pyx_k_105[] = "require_aligned_chunks";
-static char __pyx_k_106[] = "[X]";
-static char __pyx_k_107[] = "Must specify an alignment object";
-static char __pyx_k_109[] = "Reading precomputed data from file %s... ";
-static char __pyx_k_110[] = "Precomputation done with max nonterminals %d, decoder uses %d";
-static char __pyx_k_111[] = "Precomputation done with max terminals %d, decoder uses %d";
-static char __pyx_k_112[] = "Precomputation done with max initial size %d, decoder uses %d";
-static char __pyx_k_113[] = "Precomputation done with min gap size %d, decoder uses %d";
-static char __pyx_k_114[] = "Converting %d hash keys on precomputed inverted index... ";
-static char __pyx_k_115[] = "Converting %d hash keys on precomputed collocations... ";
-static char __pyx_k_116[] = "Processing precomputations took %f seconds";
-static char __pyx_k_117[] = "{";
- static char __pyx_k_118[] = "(";
-static char __pyx_k_119[] = "}";
-static char __pyx_k_120[] = "get_precomputed_collocation";
-static char __pyx_k_121[] = "double binary";
-static char __pyx_k_122[] = "Keyword trie error";
-static char __pyx_k_124[] = "get_all_nodes_isteps_away";
-static char __pyx_k_125[] = "Total time for rule lookup, extraction, and scoring = %f seconds";
-static char __pyx_k_126[] = " Extract time = %f seconds";
-static char __pyx_k_127[] = "No aligned terminals";
-static char __pyx_k_128[] = "Unaligned chunk";
-static char __pyx_k_129[] = "Gaps are not tight phrases";
-static char __pyx_k_130[] = "Inside edges of preceding subphrase are not tight";
-static char __pyx_k_131[] = "Inside edges of following subphrase are not tight";
-static char __pyx_k_132[] = "Subphrase [%d, %d] failed integrity check";
-static char __pyx_k_133[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
-static char __pyx_k_134[] = "Unable to extract basic phrase";
-static char __pyx_k_135[] = "%s=%s";
-static char __pyx_k_138[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/_sa.pyx";
-static char __pyx_k_139[] = "cdec.sa";
-static char __pyx_k_143[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi";
-static char __pyx_k_148[] = "*EPS*";
+static char __pyx_k_100[] = "Sampling strategy: uniform, max sample size = %d";
+static char __pyx_k_101[] = "Sampling strategy: no sampling";
+static char __pyx_k_103[] = "require_aligned_terminal";
+static char __pyx_k_104[] = "require_aligned_chunks";
+static char __pyx_k_105[] = "[X]";
+static char __pyx_k_106[] = "Must specify an alignment object";
+static char __pyx_k_108[] = "Reading precomputed data from file %s... ";
+static char __pyx_k_109[] = "Precomputation done with max nonterminals %d, decoder uses %d";
+static char __pyx_k_110[] = "Precomputation done with max terminals %d, decoder uses %d";
+static char __pyx_k_111[] = "Precomputation done with max initial size %d, decoder uses %d";
+static char __pyx_k_112[] = "Precomputation done with min gap size %d, decoder uses %d";
+static char __pyx_k_113[] = "Converting %d hash keys on precomputed inverted index... ";
+static char __pyx_k_114[] = "Converting %d hash keys on precomputed collocations... ";
+static char __pyx_k_115[] = "Processing precomputations took %f seconds";
+static char __pyx_k_116[] = "{";
+ static char __pyx_k_117[] = "(";
+static char __pyx_k_118[] = "}";
+static char __pyx_k_119[] = "get_precomputed_collocation";
+static char __pyx_k_120[] = "double binary";
+static char __pyx_k_121[] = "Keyword trie error";
+static char __pyx_k_123[] = "get_all_nodes_isteps_away";
+static char __pyx_k_124[] = "Total time for rule lookup, extraction, and scoring = %f seconds";
+static char __pyx_k_125[] = " Extract time = %f seconds";
+static char __pyx_k_126[] = "No aligned terminals";
+static char __pyx_k_127[] = "Unaligned chunk";
+static char __pyx_k_128[] = "Gaps are not tight phrases";
+static char __pyx_k_129[] = "Inside edges of preceding subphrase are not tight";
+static char __pyx_k_130[] = "Inside edges of following subphrase are not tight";
+static char __pyx_k_131[] = "Subphrase [%d, %d] failed integrity check";
+static char __pyx_k_132[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
+static char __pyx_k_133[] = "Unable to extract basic phrase";
+static char __pyx_k_134[] = "%s=%s";
+static char __pyx_k_137[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/_sa.pyx";
+static char __pyx_k_138[] = "cdec.sa";
+static char __pyx_k_142[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi";
+static char __pyx_k_147[] = "*EPS*";
static char __pyx_k__gc[] = "gc";
static char __pyx_k__sa[] = "sa";
static char __pyx_k___sa[] = "_sa";
@@ -2721,7 +2729,6 @@ static char __pyx_k__sample_size[] = "sample_size";
static char __pyx_k__suffix_link[] = "suffix_link";
static char __pyx_k__use_sent_id[] = "use_sent_id";
static char __pyx_k___doquicksort[] = "_doquicksort";
-static char __pyx_k__get_sentence[] = "get_sentence";
static char __pyx_k__gzip_or_text[] = "gzip_or_text";
static char __pyx_k__make_lattice[] = "make_lattice";
static char __pyx_k__min_gap_size[] = "min_gap_size";
@@ -2738,7 +2745,6 @@ static char __pyx_k__read_text_data[] = "read_text_data";
static char __pyx_k__by_slack_factor[] = "by_slack_factor";
static char __pyx_k__decode_sentence[] = "decode_sentence";
static char __pyx_k__get_next_states[] = "get_next_states";
-static char __pyx_k__get_sentence_id[] = "get_sentence_id";
static char __pyx_k__num_subpatterns[] = "num_subpatterns";
static char __pyx_k__phrase_location[] = "phrase_location";
static char __pyx_k__precompute_file[] = "precompute_file";
@@ -2755,11 +2761,12 @@ static char __pyx_k__max_target_length[] = "max_target_length";
static char __pyx_k__train_min_gap_size[] = "train_min_gap_size";
static char __pyx_k__pattern2phrase_plus[] = "pattern2phrase_plus";
static PyObject *__pyx_kp_s_1;
+static PyObject *__pyx_kp_s_100;
static PyObject *__pyx_kp_s_101;
-static PyObject *__pyx_kp_s_102;
+static PyObject *__pyx_n_s_103;
static PyObject *__pyx_n_s_104;
-static PyObject *__pyx_n_s_105;
-static PyObject *__pyx_kp_s_107;
+static PyObject *__pyx_kp_s_106;
+static PyObject *__pyx_kp_s_108;
static PyObject *__pyx_kp_s_109;
static PyObject *__pyx_kp_s_110;
static PyObject *__pyx_kp_s_111;
@@ -2770,11 +2777,11 @@ static PyObject *__pyx_kp_s_115;
static PyObject *__pyx_kp_s_116;
static PyObject *__pyx_kp_s_117;
static PyObject *__pyx_kp_s_118;
-static PyObject *__pyx_kp_s_119;
-static PyObject *__pyx_n_s_120;
+static PyObject *__pyx_n_s_119;
+static PyObject *__pyx_kp_s_120;
static PyObject *__pyx_kp_s_121;
-static PyObject *__pyx_kp_s_122;
-static PyObject *__pyx_n_s_124;
+static PyObject *__pyx_n_s_123;
+static PyObject *__pyx_kp_s_124;
static PyObject *__pyx_kp_s_125;
static PyObject *__pyx_kp_s_126;
static PyObject *__pyx_kp_s_127;
@@ -2786,11 +2793,10 @@ static PyObject *__pyx_kp_s_131;
static PyObject *__pyx_kp_s_132;
static PyObject *__pyx_kp_s_133;
static PyObject *__pyx_kp_s_134;
-static PyObject *__pyx_kp_s_135;
+static PyObject *__pyx_kp_s_137;
static PyObject *__pyx_kp_s_138;
-static PyObject *__pyx_kp_s_139;
static PyObject *__pyx_kp_s_14;
-static PyObject *__pyx_kp_s_143;
+static PyObject *__pyx_kp_s_142;
static PyObject *__pyx_kp_s_18;
static PyObject *__pyx_kp_s_2;
static PyObject *__pyx_kp_s_21;
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((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_index->__pyx_vtab)->read_handle(__pyx_v_self->sent_index, __pyx_v_f);
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fread((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
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}
/*else*/ {
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+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":129
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fwrite((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":129
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__pyx_v_word = __pyx_t_1;
__pyx_t_1 = 0;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":130
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":131
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+ __pyx_t_5 = PyObject_Length(__pyx_v_word); if (unlikely(__pyx_t_5 == -1)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_v_word_len = (__pyx_t_5 + 1);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":131
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":132
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fwrite((&__pyx_v_word_len), (sizeof(int)), 1, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":132
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":133
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+ __pyx_t_6 = PyBytes_AsString(__pyx_v_word); if (unlikely((!__pyx_t_6) && PyErr_Occurred())) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 133; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+ __pyx_v_filename = PyBytes_AsString(__pyx_arg_filename); if (unlikely((!__pyx_v_filename) && PyErr_Occurred())) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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}
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":134
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__pyx_v_f = fopen(__pyx_v_filename, __pyx_k__w);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":137
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":138
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+ __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+ __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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__pyx_v_i = __pyx_t_4;
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":142
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+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":149
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*
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*/
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":50
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* '''Step 1: bucket sort data'''
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__pyx_v_start_time = __pyx_v_sort_start_time;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":51
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* cdef float sort_start_time = monitor_cpu()
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":53
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}
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":55
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":61
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*
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":63
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(__pyx_v_self->sa->arr[((__pyx_v_self->ha->arr[__pyx_v_a_i]) + (__pyx_v_word_count->arr[__pyx_v_a_i]))]) = __pyx_v_i;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":64
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":55
* a_i = self.darray.data.arr[i]
* self.sa.arr[self.ha.arr[a_i] + word_count.arr[a_i]] = i
* isa.arr[i] = self.ha.arr[a_i + 1] - 1 # bucket pointer is last index in bucket # <<<<<<<<<<<<<<
@@ -33233,7 +33430,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":65
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":56
* self.sa.arr[self.ha.arr[a_i] + word_count.arr[a_i]] = i
* isa.arr[i] = self.ha.arr[a_i + 1] - 1 # bucket pointer is last index in bucket
* word_count.arr[a_i] = word_count.arr[a_i] + 1 # <<<<<<<<<<<<<<
@@ -33243,7 +33440,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
(__pyx_v_word_count->arr[__pyx_v_a_i]) = ((__pyx_v_word_count->arr[__pyx_v_a_i]) + 1);
}
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":68
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":59
*
* '''Determine size of initial runs'''
* current_run = 0 # <<<<<<<<<<<<<<
@@ -33252,7 +33449,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
__pyx_v_current_run = 0;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":69
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":60
* '''Determine size of initial runs'''
* current_run = 0
* for i from 0 <= i < V+1: # <<<<<<<<<<<<<<
@@ -33262,7 +33459,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
__pyx_t_5 = (__pyx_v_V + 1);
for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":70
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":61
* current_run = 0
* for i from 0 <= i < V+1:
* if i < V and self.ha.arr[i+1] - self.ha.arr[i] == 1: # <<<<<<<<<<<<<<
@@ -33278,7 +33475,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
}
if (__pyx_t_8) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":71
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":62
* for i from 0 <= i < V+1:
* if i < V and self.ha.arr[i+1] - self.ha.arr[i] == 1:
* current_run = current_run + 1 # <<<<<<<<<<<<<<
@@ -33290,7 +33487,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
}
/*else*/ {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":73
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":64
* current_run = current_run + 1
* else:
* if current_run > 0: # <<<<<<<<<<<<<<
@@ -33300,7 +33497,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
__pyx_t_8 = (__pyx_v_current_run > 0);
if (__pyx_t_8) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":74
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":65
* else:
* if current_run > 0:
* self.sa.arr[self.ha.arr[i] - current_run] = -current_run # <<<<<<<<<<<<<<
@@ -33309,7 +33506,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":75
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":66
* if current_run > 0:
* self.sa.arr[self.ha.arr[i] - current_run] = -current_run
* current_run = 0 # <<<<<<<<<<<<<<
@@ -33324,35 +33521,35 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
__pyx_L11:;
}
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":77
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":68
* current_run = 0
*
* logger.info(" Bucket sort took %f seconds", (monitor_cpu() - sort_start_time)) # <<<<<<<<<<<<<<
*
* '''Step 2: prefix-doubling sort'''
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- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_90));
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PyTuple_SET_ITEM(__pyx_t_9, 1, __pyx_t_2);
__Pyx_GIVEREF(__pyx_t_2);
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":80
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":71
*
* '''Step 2: prefix-doubling sort'''
* h = 1 # <<<<<<<<<<<<<<
@@ -33361,7 +33558,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
__pyx_v_h = 1;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":81
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":72
* '''Step 2: prefix-doubling sort'''
* h = 1
* while self.sa.arr[0] != -N: # <<<<<<<<<<<<<<
@@ -33372,7 +33569,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
__pyx_t_8 = ((__pyx_v_self->sa->arr[0]) != (-__pyx_v_N));
if (!__pyx_t_8) break;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":82
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":73
* h = 1
* while self.sa.arr[0] != -N:
* sort_start_time = monitor_cpu() # <<<<<<<<<<<<<<
@@ -33381,35 +33578,35 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
__pyx_v_sort_start_time = __pyx_f_3_sa_monitor_cpu();
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":83
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":74
* while self.sa.arr[0] != -N:
* sort_start_time = monitor_cpu()
* logger.debug(" Refining, sort depth = %d", h) # <<<<<<<<<<<<<<
* i = 0
* skip = 0
*/
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":84
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":75
* sort_start_time = monitor_cpu()
* logger.debug(" Refining, sort depth = %d", h)
* i = 0 # <<<<<<<<<<<<<<
@@ -33418,7 +33615,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
__pyx_v_i = 0;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":85
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":76
* logger.debug(" Refining, sort depth = %d", h)
* i = 0
* skip = 0 # <<<<<<<<<<<<<<
@@ -33427,7 +33624,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
__pyx_v_skip = 0;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":86
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":77
* i = 0
* skip = 0
* while i < N: # <<<<<<<<<<<<<<
@@ -33438,7 +33635,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
__pyx_t_8 = (__pyx_v_i < __pyx_v_N);
if (!__pyx_t_8) break;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":87
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":78
* skip = 0
* while i < N:
* if self.sa.arr[i] < 0: # <<<<<<<<<<<<<<
@@ -33448,7 +33645,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
__pyx_t_8 = ((__pyx_v_self->sa->arr[__pyx_v_i]) < 0);
if (__pyx_t_8) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":88
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":79
* while i < N:
* if self.sa.arr[i] < 0:
* skip = skip + self.sa.arr[i] # <<<<<<<<<<<<<<
@@ -33457,7 +33654,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
__pyx_v_skip = (__pyx_v_skip + (__pyx_v_self->sa->arr[__pyx_v_i]));
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":89
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":80
* if self.sa.arr[i] < 0:
* skip = skip + self.sa.arr[i]
* i = i - self.sa.arr[i] # <<<<<<<<<<<<<<
@@ -33469,7 +33666,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
}
/*else*/ {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":91
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":82
* i = i - self.sa.arr[i]
* else:
* if skip < 0: # <<<<<<<<<<<<<<
@@ -33479,7 +33676,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
__pyx_t_8 = (__pyx_v_skip < 0);
if (__pyx_t_8) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":92
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":83
* else:
* if skip < 0:
* self.sa.arr[i+skip] = skip # <<<<<<<<<<<<<<
@@ -33488,7 +33685,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":93
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":84
* if skip < 0:
* self.sa.arr[i+skip] = skip
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@@ -33500,7 +33697,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
}
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":94
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":85
* self.sa.arr[i+skip] = skip
* skip = 0
* j = isa.arr[self.sa.arr[i]] # <<<<<<<<<<<<<<
@@ -33509,22 +33706,22 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_S
*/
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return NULL;
__pyx_L4_argument_unpacking_done:;
- if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_isa), __pyx_ptype_3_sa_IntList, 1, "isa", 0))) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 109; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __pyx_r = __pyx_pf_3_sa_11SuffixArray_12q3sort(((struct __pyx_obj_3_sa_SuffixArray *)__pyx_v_self), __pyx_v_i, __pyx_v_j, __pyx_v_h, __pyx_v_isa, __pyx_v_pad);
+ if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_isa), __pyx_ptype_3_sa_IntList, 1, "isa", 0))) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 100; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_r = __pyx_pf_3_sa_11SuffixArray_6q3sort(((struct __pyx_obj_3_sa_SuffixArray *)__pyx_v_self), __pyx_v_i, __pyx_v_j, __pyx_v_h, __pyx_v_isa, __pyx_v_pad);
goto __pyx_L0;
__pyx_L1_error:;
__pyx_r = NULL;
@@ -33800,7 +33997,7 @@ static PyObject *__pyx_pw_3_sa_11SuffixArray_13q3sort(PyObject *__pyx_v_self, Py
return __pyx_r;
}
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":109
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":100
* logger.info("Suffix array construction took %f seconds", (monitor_cpu() - start_time))
*
* def q3sort(self, int i, int j, int h, IntList isa, pad=""): # <<<<<<<<<<<<<<
@@ -33808,7 +34005,7 @@ static PyObject *__pyx_pw_3_sa_11SuffixArray_13q3sort(PyObject *__pyx_v_self, Py
* three partitions: items less than the pivot, items equal
*/
-static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, int __pyx_v_i, int __pyx_v_j, int __pyx_v_h, struct __pyx_obj_3_sa_IntList *__pyx_v_isa, PyObject *__pyx_v_pad) {
+static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, int __pyx_v_i, int __pyx_v_j, int __pyx_v_h, struct __pyx_obj_3_sa_IntList *__pyx_v_isa, PyObject *__pyx_v_pad) {
int __pyx_v_k;
int __pyx_v_midpoint;
int __pyx_v_pval;
@@ -33830,7 +34027,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
int __pyx_clineno = 0;
__Pyx_RefNannySetupContext("q3sort", 0);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":116
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":107
* cdef int k, midpoint, pval, phead, ptail, tmp
*
* if j-i < -1: # <<<<<<<<<<<<<<
@@ -33840,18 +34037,18 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__pyx_t_1 = ((__pyx_v_j - __pyx_v_i) < -1);
if (__pyx_t_1) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":117
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":108
*
* if j-i < -1:
* raise Exception("Unexpected condition found in q3sort: sort from %d to %d" % (i,j)) # <<<<<<<<<<<<<<
* if j-i == -1: # recursive base case -- empty interval
* return
*/
- __pyx_t_2 = PyInt_FromLong(__pyx_v_i); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_2 = PyInt_FromLong(__pyx_v_i); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
- __pyx_t_3 = PyInt_FromLong(__pyx_v_j); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_3 = PyInt_FromLong(__pyx_v_j); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_3);
- __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_4);
PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_t_2);
__Pyx_GIVEREF(__pyx_t_2);
@@ -33859,25 +34056,25 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__Pyx_GIVEREF(__pyx_t_3);
__pyx_t_2 = 0;
__pyx_t_3 = 0;
- __pyx_t_3 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_96), ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_3 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_95), ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(((PyObject *)__pyx_t_3));
__Pyx_DECREF(((PyObject *)__pyx_t_4)); __pyx_t_4 = 0;
- __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_4);
PyTuple_SET_ITEM(__pyx_t_4, 0, ((PyObject *)__pyx_t_3));
__Pyx_GIVEREF(((PyObject *)__pyx_t_3));
__pyx_t_3 = 0;
- __pyx_t_3 = PyObject_Call(__pyx_builtin_Exception, ((PyObject *)__pyx_t_4), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_3 = PyObject_Call(__pyx_builtin_Exception, ((PyObject *)__pyx_t_4), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_3);
__Pyx_DECREF(((PyObject *)__pyx_t_4)); __pyx_t_4 = 0;
__Pyx_Raise(__pyx_t_3, 0, 0, 0);
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
- {__pyx_filename = __pyx_f[12]; __pyx_lineno = 117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ {__pyx_filename = __pyx_f[12]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
goto __pyx_L3;
}
__pyx_L3:;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":118
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":109
* if j-i < -1:
* raise Exception("Unexpected condition found in q3sort: sort from %d to %d" % (i,j))
* if j-i == -1: # recursive base case -- empty interval # <<<<<<<<<<<<<<
@@ -33887,7 +34084,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__pyx_t_1 = ((__pyx_v_j - __pyx_v_i) == -1);
if (__pyx_t_1) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":119
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":110
* raise Exception("Unexpected condition found in q3sort: sort from %d to %d" % (i,j))
* if j-i == -1: # recursive base case -- empty interval
* return # <<<<<<<<<<<<<<
@@ -33901,7 +34098,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
}
__pyx_L4:;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":120
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":111
* if j-i == -1: # recursive base case -- empty interval
* return
* if (j-i == 0): # recursive base case -- singleton interval # <<<<<<<<<<<<<<
@@ -33911,7 +34108,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__pyx_t_1 = ((__pyx_v_j - __pyx_v_i) == 0);
if (__pyx_t_1) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":121
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":112
* return
* if (j-i == 0): # recursive base case -- singleton interval
* isa.arr[self.sa.arr[i]] = i # <<<<<<<<<<<<<<
@@ -33920,7 +34117,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
(__pyx_v_isa->arr[(__pyx_v_self->sa->arr[__pyx_v_i])]) = __pyx_v_i;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":122
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":113
* if (j-i == 0): # recursive base case -- singleton interval
* isa.arr[self.sa.arr[i]] = i
* self.sa.arr[i] = -1 # <<<<<<<<<<<<<<
@@ -33929,7 +34126,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
(__pyx_v_self->sa->arr[__pyx_v_i]) = -1;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":123
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":114
* isa.arr[self.sa.arr[i]] = i
* self.sa.arr[i] = -1
* return # <<<<<<<<<<<<<<
@@ -33943,7 +34140,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
}
__pyx_L5:;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":132
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":123
* # If the method of assigning word_id's is changed, this method
* # may need to be reconsidered as well.
* midpoint = (i+j)/2 # <<<<<<<<<<<<<<
@@ -33952,7 +34149,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_midpoint = __Pyx_div_long((__pyx_v_i + __pyx_v_j), 2);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":133
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":124
* # may need to be reconsidered as well.
* midpoint = (i+j)/2
* pval = isa.arr[self.sa.arr[midpoint] + h] # <<<<<<<<<<<<<<
@@ -33961,7 +34158,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_pval = (__pyx_v_isa->arr[((__pyx_v_self->sa->arr[__pyx_v_midpoint]) + __pyx_v_h)]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":134
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":125
* midpoint = (i+j)/2
* pval = isa.arr[self.sa.arr[midpoint] + h]
* if i != midpoint: # <<<<<<<<<<<<<<
@@ -33971,7 +34168,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__pyx_t_1 = (__pyx_v_i != __pyx_v_midpoint);
if (__pyx_t_1) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":135
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":126
* pval = isa.arr[self.sa.arr[midpoint] + h]
* if i != midpoint:
* tmp = self.sa.arr[midpoint] # <<<<<<<<<<<<<<
@@ -33980,7 +34177,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_tmp = (__pyx_v_self->sa->arr[__pyx_v_midpoint]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":136
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":127
* if i != midpoint:
* tmp = self.sa.arr[midpoint]
* self.sa.arr[midpoint] = self.sa.arr[i] # <<<<<<<<<<<<<<
@@ -33989,7 +34186,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
(__pyx_v_self->sa->arr[__pyx_v_midpoint]) = (__pyx_v_self->sa->arr[__pyx_v_i]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":137
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":128
* tmp = self.sa.arr[midpoint]
* self.sa.arr[midpoint] = self.sa.arr[i]
* self.sa.arr[i] = tmp # <<<<<<<<<<<<<<
@@ -34001,7 +34198,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
}
__pyx_L6:;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":138
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":129
* self.sa.arr[midpoint] = self.sa.arr[i]
* self.sa.arr[i] = tmp
* phead = i # <<<<<<<<<<<<<<
@@ -34010,7 +34207,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_phead = __pyx_v_i;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":139
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":130
* self.sa.arr[i] = tmp
* phead = i
* ptail = i # <<<<<<<<<<<<<<
@@ -34019,7 +34216,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_ptail = __pyx_v_i;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":143
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":134
* # find the three partitions. phead marks the first element
* # of the middle partition, and ptail marks the last element
* for k from i+1 <= k < j+1: # <<<<<<<<<<<<<<
@@ -34029,7 +34226,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__pyx_t_5 = (__pyx_v_j + 1);
for (__pyx_v_k = (__pyx_v_i + 1); __pyx_v_k < __pyx_t_5; __pyx_v_k++) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":144
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":135
* # of the middle partition, and ptail marks the last element
* for k from i+1 <= k < j+1:
* if isa.arr[self.sa.arr[k] + h] < pval: # <<<<<<<<<<<<<<
@@ -34039,7 +34236,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__pyx_t_1 = ((__pyx_v_isa->arr[((__pyx_v_self->sa->arr[__pyx_v_k]) + __pyx_v_h)]) < __pyx_v_pval);
if (__pyx_t_1) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":145
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":136
* for k from i+1 <= k < j+1:
* if isa.arr[self.sa.arr[k] + h] < pval:
* if k > ptail+1: # <<<<<<<<<<<<<<
@@ -34049,7 +34246,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
__pyx_t_1 = (__pyx_v_k > (__pyx_v_ptail + 1));
if (__pyx_t_1) {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":146
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":137
* if isa.arr[self.sa.arr[k] + h] < pval:
* if k > ptail+1:
* tmp = self.sa.arr[phead] # <<<<<<<<<<<<<<
@@ -34058,7 +34255,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_tmp = (__pyx_v_self->sa->arr[__pyx_v_phead]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":147
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":138
* if k > ptail+1:
* tmp = self.sa.arr[phead]
* self.sa.arr[phead] = self.sa.arr[k] # <<<<<<<<<<<<<<
@@ -34067,7 +34264,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
(__pyx_v_self->sa->arr[__pyx_v_phead]) = (__pyx_v_self->sa->arr[__pyx_v_k]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":148
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":139
* tmp = self.sa.arr[phead]
* self.sa.arr[phead] = self.sa.arr[k]
* self.sa.arr[k] = self.sa.arr[ptail+1] # <<<<<<<<<<<<<<
@@ -34076,7 +34273,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
(__pyx_v_self->sa->arr[__pyx_v_k]) = (__pyx_v_self->sa->arr[(__pyx_v_ptail + 1)]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":149
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":140
* self.sa.arr[phead] = self.sa.arr[k]
* self.sa.arr[k] = self.sa.arr[ptail+1]
* self.sa.arr[ptail+1] = tmp # <<<<<<<<<<<<<<
@@ -34088,7 +34285,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
}
/*else*/ {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":151
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":142
* self.sa.arr[ptail+1] = tmp
* else: # k == ptail+1
* tmp = self.sa.arr[phead] # <<<<<<<<<<<<<<
@@ -34097,7 +34294,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_tmp = (__pyx_v_self->sa->arr[__pyx_v_phead]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":152
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":143
* else: # k == ptail+1
* tmp = self.sa.arr[phead]
* self.sa.arr[phead] = self.sa.arr[k] # <<<<<<<<<<<<<<
@@ -34106,7 +34303,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
(__pyx_v_self->sa->arr[__pyx_v_phead]) = (__pyx_v_self->sa->arr[__pyx_v_k]);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":153
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":144
* tmp = self.sa.arr[phead]
* self.sa.arr[phead] = self.sa.arr[k]
* self.sa.arr[k] = tmp # <<<<<<<<<<<<<<
@@ -34117,7 +34314,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
}
__pyx_L10:;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":154
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":145
* self.sa.arr[phead] = self.sa.arr[k]
* self.sa.arr[k] = tmp
* phead = phead + 1 # <<<<<<<<<<<<<<
@@ -34126,7 +34323,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_Suff
*/
__pyx_v_phead = (__pyx_v_phead + 1);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":155
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":146
* self.sa.arr[k] = tmp
* phead = phead + 1
* ptail = ptail + 1 # <<<<<<<<<<<<<<
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__pyx_t_1 = 0;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":201
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":192
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__Pyx_GIVEREF(((PyObject *)__pyx_t_4));
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}
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":193
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+ __pyx_t_2 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 193; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":194
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+ __pyx_t_8 = -1; __pyx_t_4 = PyObject_GetIter(((PyObject *)__pyx_v_self->ha)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 194; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__pyx_t_9 = Py_TYPE(__pyx_t_4)->tp_iternext;
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+ __pyx_t_2 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 194; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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+ __pyx_t_2 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 194; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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} else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_4)) {
if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
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+ __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 194; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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+ __pyx_t_2 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 194; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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- else {__pyx_filename = __pyx_f[12]; __pyx_lineno = 203; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__pyx_v_w_i = __pyx_t_2;
__pyx_t_2 = 0;
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":204
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":195
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+ __pyx_t_2 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 195; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(__pyx_t_2);
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+ __pyx_t_10 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_w_i); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 195; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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+ __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 195; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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+ __pyx_t_10 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 195; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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}
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":196
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+ __pyx_t_10 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_k_tuple_97), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(__pyx_t_10);
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
__Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
@@ -34879,7 +35076,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_20write_enhanced(struct __pyx_obj_3
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__Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
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+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":189
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+ __pyx_t_2 = PyTuple_New(3); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 189; __pyx_clineno = __LINE__; goto __pyx_L9_except_error;}
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PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_10);
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__Pyx_GIVEREF(__pyx_t_10);
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return __pyx_r;
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* cdef int midpoint
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}
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@@ -35364,7 +35561,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
}
/*else*/ {
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/suffix_array.pxi":247
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+ __pyx_t_4 = ((struct __pyx_vtabstruct_3_sa_SuffixArray *)__pyx_v_self->__pyx_vtab)->__pyx___lookup_helper(__pyx_v_self, __pyx_v_word_id, __pyx_v_offset, (__pyx_v_midpoint + 1), __pyx_v_high); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 238; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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__pyx_t_4 = 0;
@@ -35395,8 +35592,8 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
}
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-static PyObject *__pyx_pw_3_sa_11SuffixArray_23lookup(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
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+static PyObject *__pyx_pw_3_sa_11SuffixArray_17lookup(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
PyObject *__pyx_v_word = 0;
int __pyx_v_offset;
int __pyx_v_low;
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case 1:
if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__offset)) != 0)) kw_args--;
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- __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 1); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 249; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+ __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 1); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+ __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 2); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__high)) != 0)) kw_args--;
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- __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 3); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 249; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+ __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 3); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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goto __pyx_L5_argtuple_error;
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+ __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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}
/*else*/ {
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{
static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__extended,0};
PyObject* values[1] = {0};
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Py_ssize_t kw_args;
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case 13:
if (kw_args > 0) {
- PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_104);
+ PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_103);
if (value) { values[13] = value; kw_args--; }
}
case 14:
if (kw_args > 0) {
- PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_105);
+ PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_104);
if (value) { values[14] = value; kw_args--; }
}
case 15:
@@ -37927,7 +38124,7 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
if (values[2]) {
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} else {
- __pyx_v_category = ((char *)__pyx_k_106);
+ __pyx_v_category = ((char *)__pyx_k_105);
}
__pyx_v_max_chunks = values[3];
if (values[4]) {
@@ -38152,7 +38349,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
* self.alignment = alignment
*
*/
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+ __pyx_t_2 = PyObject_Call(__pyx_builtin_Exception, ((PyObject *)__pyx_k_tuple_107), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 316; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
__Pyx_Raise(__pyx_t_2, 0, 0, 0);
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
@@ -39568,9 +39765,9 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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__Pyx_GOTREF(__pyx_t_2);
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- PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_109));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_109));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_108));
+ PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_108));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_108));
__Pyx_INCREF(__pyx_v_self->precompute_file);
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_v_self->precompute_file);
__Pyx_GIVEREF(__pyx_v_self->precompute_file);
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__Pyx_GOTREF(__pyx_t_3);
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__Pyx_GOTREF(__pyx_t_5);
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_110));
- PyTuple_SET_ITEM(__pyx_t_5, 0, ((PyObject *)__pyx_kp_s_110));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_110));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_109));
+ PyTuple_SET_ITEM(__pyx_t_5, 0, ((PyObject *)__pyx_kp_s_109));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_109));
PyTuple_SET_ITEM(__pyx_t_5, 1, __pyx_t_2);
__Pyx_GIVEREF(__pyx_t_2);
PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_t_3);
@@ -39670,9 +39867,9 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
__Pyx_GOTREF(__pyx_t_4);
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__Pyx_GOTREF(__pyx_t_2);
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_111));
- PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_111));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_111));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_110));
+ PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_110));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_110));
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_3);
__Pyx_GIVEREF(__pyx_t_3);
PyTuple_SET_ITEM(__pyx_t_2, 2, __pyx_t_4);
@@ -39717,7 +39914,7 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
__Pyx_GIVEREF(__pyx_t_2);
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__pyx_t_2 = 0;
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__Pyx_GOTREF(((PyObject *)__pyx_t_2));
__Pyx_DECREF(((PyObject *)__pyx_t_5)); __pyx_t_5 = 0;
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@@ -39764,7 +39961,7 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
__Pyx_GIVEREF(__pyx_t_5);
__pyx_t_2 = 0;
__pyx_t_5 = 0;
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+ __pyx_t_5 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_112), ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 450; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(((PyObject *)__pyx_t_5));
__Pyx_DECREF(((PyObject *)__pyx_t_4)); __pyx_t_4 = 0;
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@@ -39811,9 +40008,9 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
__Pyx_GOTREF(__pyx_t_5);
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__Pyx_GOTREF(__pyx_t_2);
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_114));
- PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_114));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_114));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_113));
+ PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_113));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_113));
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_5);
__Pyx_GIVEREF(__pyx_t_5);
__pyx_t_5 = 0;
@@ -39965,9 +40162,9 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
__Pyx_GOTREF(__pyx_t_5);
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__Pyx_GOTREF(__pyx_t_2);
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- PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_115));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_115));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_114));
+ PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_114));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_114));
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_5);
__Pyx_GIVEREF(__pyx_t_5);
__pyx_t_5 = 0;
@@ -40071,9 +40268,9 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
__Pyx_GOTREF(__pyx_t_5);
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__Pyx_GOTREF(__pyx_t_2);
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- PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_116));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_116));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_115));
+ PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_115));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_115));
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_5);
__Pyx_GIVEREF(__pyx_t_5);
__pyx_t_5 = 0;
@@ -42793,8 +42990,8 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_loc2str(CYTHON_UNUSED st
* i = 0
* while i < loc.arr_high:
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_117));
- __pyx_v_result = ((PyObject *)__pyx_kp_s_117);
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_116));
+ __pyx_v_result = ((PyObject *)__pyx_kp_s_116);
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* for j from i <= j < i + loc.num_subpatterns:
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*/
- __pyx_t_2 = PyNumber_Add(__pyx_v_result, ((PyObject *)__pyx_kp_s_118)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 813; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_2 = PyNumber_Add(__pyx_v_result, ((PyObject *)__pyx_kp_s_117)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 813; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
__Pyx_DECREF(__pyx_v_result);
__pyx_v_result = __pyx_t_2;
@@ -42889,7 +43086,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_loc2str(CYTHON_UNUSED st
* return result
*
*/
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+ __pyx_t_2 = PyNumber_Add(__pyx_v_result, ((PyObject *)__pyx_kp_s_118)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 818; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
__Pyx_DECREF(__pyx_v_result);
__pyx_v_result = __pyx_t_2;
@@ -43006,7 +43203,7 @@ static struct __pyx_obj_3_sa_PhraseLocation *__pyx_f_3_sa_23HieroCachingRuleFact
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*/
- __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s_120); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s_119); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 830; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_1);
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__Pyx_GOTREF(__pyx_t_2);
@@ -43084,9 +43281,9 @@ static struct __pyx_obj_3_sa_PhraseLocation *__pyx_f_3_sa_23HieroCachingRuleFact
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*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_121));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_120));
__Pyx_XDECREF(__pyx_v_intersect_method);
- __pyx_v_intersect_method = ((PyObject *)__pyx_kp_s_121);
+ __pyx_v_intersect_method = ((PyObject *)__pyx_kp_s_120);
goto __pyx_L5;
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@@ -46783,7 +46980,7 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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+ __pyx_t_3 = PyObject_Call(__pyx_builtin_Exception, ((PyObject *)__pyx_k_tuple_122), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1022; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_3);
__Pyx_Raise(__pyx_t_3, 0, 0, 0);
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
@@ -48599,7 +48796,7 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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*/
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+ __pyx_t_9 = PyObject_GetAttr(((PyObject *)__pyx_cur_scope->__pyx_v_self), __pyx_n_s_123); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1127; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_9);
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__Pyx_GOTREF(__pyx_t_10);
@@ -48863,9 +49060,9 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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- PyTuple_SET_ITEM(__pyx_t_12, 0, ((PyObject *)__pyx_kp_s_125));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_125));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_124));
+ PyTuple_SET_ITEM(__pyx_t_12, 0, ((PyObject *)__pyx_kp_s_124));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_124));
PyTuple_SET_ITEM(__pyx_t_12, 1, __pyx_t_13);
__Pyx_GIVEREF(__pyx_t_13);
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@@ -48908,9 +49105,9 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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__Pyx_GOTREF(__pyx_t_2);
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- PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_126));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_126));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_125));
+ PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_kp_s_125));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_125));
PyTuple_SET_ITEM(__pyx_t_2, 1, __pyx_t_13);
__Pyx_GIVEREF(__pyx_t_13);
__pyx_t_13 = 0;
@@ -52078,9 +52275,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
* met_constraints = 0
* if self.require_aligned_chunks and num_aligned_chunks < num_chunks:
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_126));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
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/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1496
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* met_constraints = 0
*
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1499
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* met_constraints = 0
* break
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1506
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* met_constraints = 0
* break
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1510
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*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_130));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_130);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
goto __pyx_L38;
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__pyx_L38:;
@@ -52630,9 +52827,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
* else:
* if self.tight_phrases and f_links_low[f_high-1] == -1:
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_131));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_130));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_131);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_130);
goto __pyx_L45;
}
__pyx_L45:;
@@ -52750,7 +52947,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
__Pyx_GIVEREF(__pyx_t_1);
__pyx_t_10 = 0;
__pyx_t_1 = 0;
- __pyx_t_1 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_132), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1575; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_1 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_131), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1575; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(((PyObject *)__pyx_t_1));
__Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
__Pyx_DECREF(__pyx_v_reason_for_failure);
@@ -53066,7 +53263,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
__pyx_t_2 = 0;
__pyx_t_1 = 0;
__pyx_t_14 = 0;
- __pyx_t_14 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_133), ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1605; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_14 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_132), ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1605; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(((PyObject *)__pyx_t_14));
__Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
__Pyx_DECREF(__pyx_v_reason_for_failure);
@@ -55284,9 +55481,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
*
* free(sent_links)
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_134));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_133));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_134);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_133);
}
__pyx_L34:;
goto __pyx_L33;
@@ -55887,7 +56084,7 @@ static PyObject *__pyx_gb_3_sa_13FeatureVector_7__str___2generator12(__pyx_Gener
__Pyx_GIVEREF(__pyx_t_4);
__pyx_cur_scope->__pyx_v_feat = __pyx_t_4;
__pyx_t_4 = 0;
- __pyx_t_4 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_135), __pyx_cur_scope->__pyx_v_feat); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 21; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_4 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_134), __pyx_cur_scope->__pyx_v_feat); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 21; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(((PyObject *)__pyx_t_4));
__pyx_r = ((PyObject *)__pyx_t_4);
__pyx_t_4 = 0;
@@ -57617,6 +57814,39 @@ static int __pyx_tp_clear_3_sa_DataArray(PyObject *o) {
Py_XDECREF(tmp);
return 0;
}
+static PyObject *__pyx_sq_item_3_sa_DataArray(PyObject *o, Py_ssize_t i) {
+ PyObject *r;
+ PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0;
+ r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x);
+ Py_DECREF(x);
+ return r;
+}
+
+static PyObject *__pyx_getprop_3_sa_9DataArray_word2id(PyObject *o, CYTHON_UNUSED void *x) {
+ return __pyx_pw_3_sa_9DataArray_7word2id_1__get__(o);
+}
+
+static int __pyx_setprop_3_sa_9DataArray_word2id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+ if (v) {
+ return __pyx_pw_3_sa_9DataArray_7word2id_3__set__(o, v);
+ }
+ else {
+ return __pyx_pw_3_sa_9DataArray_7word2id_5__del__(o);
+ }
+}
+
+static PyObject *__pyx_getprop_3_sa_9DataArray_id2word(PyObject *o, CYTHON_UNUSED void *x) {
+ return __pyx_pw_3_sa_9DataArray_7id2word_1__get__(o);
+}
+
+static int __pyx_setprop_3_sa_9DataArray_id2word(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+ if (v) {
+ return __pyx_pw_3_sa_9DataArray_7id2word_3__set__(o, v);
+ }
+ else {
+ return __pyx_pw_3_sa_9DataArray_7id2word_5__del__(o);
+ }
+}
static PyObject *__pyx_getprop_3_sa_9DataArray_data(PyObject *o, CYTHON_UNUSED void *x) {
return __pyx_pw_3_sa_9DataArray_4data_1__get__(o);
@@ -57631,12 +57861,37 @@ static int __pyx_setprop_3_sa_9DataArray_data(PyObject *o, PyObject *v, CYTHON_U
}
}
+static PyObject *__pyx_getprop_3_sa_9DataArray_sent_id(PyObject *o, CYTHON_UNUSED void *x) {
+ return __pyx_pw_3_sa_9DataArray_7sent_id_1__get__(o);
+}
+
+static int __pyx_setprop_3_sa_9DataArray_sent_id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+ if (v) {
+ return __pyx_pw_3_sa_9DataArray_7sent_id_3__set__(o, v);
+ }
+ else {
+ return __pyx_pw_3_sa_9DataArray_7sent_id_5__del__(o);
+ }
+}
+
+static PyObject *__pyx_getprop_3_sa_9DataArray_sent_index(PyObject *o, CYTHON_UNUSED void *x) {
+ return __pyx_pw_3_sa_9DataArray_10sent_index_1__get__(o);
+}
+
+static int __pyx_setprop_3_sa_9DataArray_sent_index(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+ if (v) {
+ return __pyx_pw_3_sa_9DataArray_10sent_index_3__set__(o, v);
+ }
+ else {
+ return __pyx_pw_3_sa_9DataArray_10sent_index_5__del__(o);
+ }
+}
+
static PyMethodDef __pyx_methods_3_sa_DataArray[] = {
{__Pyx_NAMESTR("get_sentence_id"), (PyCFunction)__pyx_pw_3_sa_9DataArray_5get_sentence_id, METH_O, __Pyx_DOCSTR(0)},
{__Pyx_NAMESTR("get_sentence"), (PyCFunction)__pyx_pw_3_sa_9DataArray_7get_sentence, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_sentence_position"), (PyCFunction)__pyx_pw_3_sa_9DataArray_9get_sentence_position, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_id"), (PyCFunction)__pyx_pw_3_sa_9DataArray_11get_id, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_word"), (PyCFunction)__pyx_pw_3_sa_9DataArray_13get_word, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("get_id"), (PyCFunction)__pyx_pw_3_sa_9DataArray_9get_id, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("get_sentence_bounds"), (PyCFunction)__pyx_pw_3_sa_9DataArray_13get_sentence_bounds, METH_O, __Pyx_DOCSTR(0)},
{__Pyx_NAMESTR("write_text"), (PyCFunction)__pyx_pw_3_sa_9DataArray_15write_text, METH_O, __Pyx_DOCSTR(0)},
{__Pyx_NAMESTR("read_text"), (PyCFunction)__pyx_pw_3_sa_9DataArray_17read_text, METH_O, __Pyx_DOCSTR(0)},
{__Pyx_NAMESTR("read_bitext"), (PyCFunction)__pyx_pw_3_sa_9DataArray_19read_bitext, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
@@ -57649,7 +57904,11 @@ static PyMethodDef __pyx_methods_3_sa_DataArray[] = {
};
static struct PyGetSetDef __pyx_getsets_3_sa_DataArray[] = {
+ {(char *)"word2id", __pyx_getprop_3_sa_9DataArray_word2id, __pyx_setprop_3_sa_9DataArray_word2id, 0, 0},
+ {(char *)"id2word", __pyx_getprop_3_sa_9DataArray_id2word, __pyx_setprop_3_sa_9DataArray_id2word, 0, 0},
{(char *)"data", __pyx_getprop_3_sa_9DataArray_data, __pyx_setprop_3_sa_9DataArray_data, 0, 0},
+ {(char *)"sent_id", __pyx_getprop_3_sa_9DataArray_sent_id, __pyx_setprop_3_sa_9DataArray_sent_id, 0, 0},
+ {(char *)"sent_index", __pyx_getprop_3_sa_9DataArray_sent_index, __pyx_setprop_3_sa_9DataArray_sent_index, 0, 0},
{0, 0, 0, 0, 0}
};
@@ -57715,7 +57974,7 @@ static PySequenceMethods __pyx_tp_as_sequence_DataArray = {
__pyx_pw_3_sa_9DataArray_3__len__, /*sq_length*/
0, /*sq_concat*/
0, /*sq_repeat*/
- 0, /*sq_item*/
+ __pyx_sq_item_3_sa_DataArray, /*sq_item*/
0, /*sq_slice*/
0, /*sq_ass_item*/
0, /*sq_ass_slice*/
@@ -57726,7 +57985,7 @@ static PySequenceMethods __pyx_tp_as_sequence_DataArray = {
static PyMappingMethods __pyx_tp_as_mapping_DataArray = {
__pyx_pw_3_sa_9DataArray_3__len__, /*mp_length*/
- 0, /*mp_subscript*/
+ __pyx_pw_3_sa_9DataArray_11__getitem__, /*mp_subscript*/
0, /*mp_ass_subscript*/
};
@@ -59881,16 +60140,13 @@ static PyObject *__pyx_sq_item_3_sa_SuffixArray(PyObject *o, Py_ssize_t i) {
}
static PyMethodDef __pyx_methods_3_sa_SuffixArray[] = {
- {__Pyx_NAMESTR("get_sentence_id"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_5get_sentence_id, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_sentence"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_7get_sentence, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("get_sentence_position"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_9get_sentence_position, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("read_text"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_11read_text, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_3_sa_11SuffixArray_10read_text)},
- {__Pyx_NAMESTR("q3sort"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_13q3sort, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_3_sa_11SuffixArray_12q3sort)},
- {__Pyx_NAMESTR("write_text"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_15write_text, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("read_binary"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_17read_binary, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("write_binary"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_19write_binary, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("write_enhanced"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_21write_enhanced, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("lookup"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_23lookup, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("read_text"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_5read_text, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_3_sa_11SuffixArray_4read_text)},
+ {__Pyx_NAMESTR("q3sort"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_7q3sort, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_3_sa_11SuffixArray_6q3sort)},
+ {__Pyx_NAMESTR("write_text"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_9write_text, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("read_binary"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_11read_binary, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("write_binary"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_13write_binary, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("write_enhanced"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_15write_enhanced, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("lookup"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_17lookup, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
{0, 0, 0, 0}
};
@@ -65928,11 +66184,12 @@ static struct PyModuleDef __pyx_moduledef = {
static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_1, __pyx_k_1, sizeof(__pyx_k_1), 0, 0, 1, 0},
+ {&__pyx_kp_s_100, __pyx_k_100, sizeof(__pyx_k_100), 0, 0, 1, 0},
{&__pyx_kp_s_101, __pyx_k_101, sizeof(__pyx_k_101), 0, 0, 1, 0},
- {&__pyx_kp_s_102, __pyx_k_102, sizeof(__pyx_k_102), 0, 0, 1, 0},
+ {&__pyx_n_s_103, __pyx_k_103, sizeof(__pyx_k_103), 0, 0, 1, 1},
{&__pyx_n_s_104, __pyx_k_104, sizeof(__pyx_k_104), 0, 0, 1, 1},
- {&__pyx_n_s_105, __pyx_k_105, sizeof(__pyx_k_105), 0, 0, 1, 1},
- {&__pyx_kp_s_107, __pyx_k_107, sizeof(__pyx_k_107), 0, 0, 1, 0},
+ {&__pyx_kp_s_106, __pyx_k_106, sizeof(__pyx_k_106), 0, 0, 1, 0},
+ {&__pyx_kp_s_108, __pyx_k_108, sizeof(__pyx_k_108), 0, 0, 1, 0},
{&__pyx_kp_s_109, __pyx_k_109, sizeof(__pyx_k_109), 0, 0, 1, 0},
{&__pyx_kp_s_110, __pyx_k_110, sizeof(__pyx_k_110), 0, 0, 1, 0},
{&__pyx_kp_s_111, __pyx_k_111, sizeof(__pyx_k_111), 0, 0, 1, 0},
@@ -65943,11 +66200,11 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_116, __pyx_k_116, sizeof(__pyx_k_116), 0, 0, 1, 0},
{&__pyx_kp_s_117, __pyx_k_117, sizeof(__pyx_k_117), 0, 0, 1, 0},
{&__pyx_kp_s_118, __pyx_k_118, sizeof(__pyx_k_118), 0, 0, 1, 0},
- {&__pyx_kp_s_119, __pyx_k_119, sizeof(__pyx_k_119), 0, 0, 1, 0},
- {&__pyx_n_s_120, __pyx_k_120, sizeof(__pyx_k_120), 0, 0, 1, 1},
+ {&__pyx_n_s_119, __pyx_k_119, sizeof(__pyx_k_119), 0, 0, 1, 1},
+ {&__pyx_kp_s_120, __pyx_k_120, sizeof(__pyx_k_120), 0, 0, 1, 0},
{&__pyx_kp_s_121, __pyx_k_121, sizeof(__pyx_k_121), 0, 0, 1, 0},
- {&__pyx_kp_s_122, __pyx_k_122, sizeof(__pyx_k_122), 0, 0, 1, 0},
- {&__pyx_n_s_124, __pyx_k_124, sizeof(__pyx_k_124), 0, 0, 1, 1},
+ {&__pyx_n_s_123, __pyx_k_123, sizeof(__pyx_k_123), 0, 0, 1, 1},
+ {&__pyx_kp_s_124, __pyx_k_124, sizeof(__pyx_k_124), 0, 0, 1, 0},
{&__pyx_kp_s_125, __pyx_k_125, sizeof(__pyx_k_125), 0, 0, 1, 0},
{&__pyx_kp_s_126, __pyx_k_126, sizeof(__pyx_k_126), 0, 0, 1, 0},
{&__pyx_kp_s_127, __pyx_k_127, sizeof(__pyx_k_127), 0, 0, 1, 0},
@@ -65959,11 +66216,10 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_132, __pyx_k_132, sizeof(__pyx_k_132), 0, 0, 1, 0},
{&__pyx_kp_s_133, __pyx_k_133, sizeof(__pyx_k_133), 0, 0, 1, 0},
{&__pyx_kp_s_134, __pyx_k_134, sizeof(__pyx_k_134), 0, 0, 1, 0},
- {&__pyx_kp_s_135, __pyx_k_135, sizeof(__pyx_k_135), 0, 0, 1, 0},
+ {&__pyx_kp_s_137, __pyx_k_137, sizeof(__pyx_k_137), 0, 0, 1, 0},
{&__pyx_kp_s_138, __pyx_k_138, sizeof(__pyx_k_138), 0, 0, 1, 0},
- {&__pyx_kp_s_139, __pyx_k_139, sizeof(__pyx_k_139), 0, 0, 1, 0},
{&__pyx_kp_s_14, __pyx_k_14, sizeof(__pyx_k_14), 0, 0, 1, 0},
- {&__pyx_kp_s_143, __pyx_k_143, sizeof(__pyx_k_143), 0, 0, 1, 0},
+ {&__pyx_kp_s_142, __pyx_k_142, sizeof(__pyx_k_142), 0, 0, 1, 0},
{&__pyx_kp_s_18, __pyx_k_18, sizeof(__pyx_k_18), 0, 0, 1, 0},
{&__pyx_kp_s_2, __pyx_k_2, sizeof(__pyx_k_2), 0, 0, 1, 0},
{&__pyx_kp_s_21, __pyx_k_21, sizeof(__pyx_k_21), 0, 0, 1, 0},
@@ -66006,14 +66262,13 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_86, __pyx_k_86, sizeof(__pyx_k_86), 0, 0, 1, 0},
{&__pyx_kp_s_87, __pyx_k_87, sizeof(__pyx_k_87), 0, 0, 1, 0},
{&__pyx_kp_s_88, __pyx_k_88, sizeof(__pyx_k_88), 0, 0, 1, 0},
- {&__pyx_n_s_89, __pyx_k_89, sizeof(__pyx_k_89), 0, 0, 1, 1},
+ {&__pyx_kp_s_89, __pyx_k_89, sizeof(__pyx_k_89), 0, 0, 1, 0},
{&__pyx_kp_s_9, __pyx_k_9, sizeof(__pyx_k_9), 0, 0, 1, 0},
{&__pyx_kp_s_90, __pyx_k_90, sizeof(__pyx_k_90), 0, 0, 1, 0},
{&__pyx_kp_s_91, __pyx_k_91, sizeof(__pyx_k_91), 0, 0, 1, 0},
{&__pyx_kp_s_92, __pyx_k_92, sizeof(__pyx_k_92), 0, 0, 1, 0},
- {&__pyx_kp_s_93, __pyx_k_93, sizeof(__pyx_k_93), 0, 0, 1, 0},
+ {&__pyx_kp_s_94, __pyx_k_94, sizeof(__pyx_k_94), 0, 0, 1, 0},
{&__pyx_kp_s_95, __pyx_k_95, sizeof(__pyx_k_95), 0, 0, 1, 0},
- {&__pyx_kp_s_96, __pyx_k_96, sizeof(__pyx_k_96), 0, 0, 1, 0},
{&__pyx_kp_s__0, __pyx_k__0, sizeof(__pyx_k__0), 0, 0, 1, 0},
{&__pyx_kp_s__1, __pyx_k__1, sizeof(__pyx_k__1), 0, 0, 1, 0},
{&__pyx_n_s__Counter, __pyx_k__Counter, sizeof(__pyx_k__Counter), 0, 0, 1, 1},
@@ -66091,8 +66346,6 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_n_s__get_f_id, __pyx_k__get_f_id, sizeof(__pyx_k__get_f_id), 0, 0, 1, 1},
{&__pyx_n_s__get_id, __pyx_k__get_id, sizeof(__pyx_k__get_id), 0, 0, 1, 1},
{&__pyx_n_s__get_next_states, __pyx_k__get_next_states, sizeof(__pyx_k__get_next_states), 0, 0, 1, 1},
- {&__pyx_n_s__get_sentence, __pyx_k__get_sentence, sizeof(__pyx_k__get_sentence), 0, 0, 1, 1},
- {&__pyx_n_s__get_sentence_id, __pyx_k__get_sentence_id, sizeof(__pyx_k__get_sentence_id), 0, 0, 1, 1},
{&__pyx_n_s__get_word, __pyx_k__get_word, sizeof(__pyx_k__get_word), 0, 0, 1, 1},
{&__pyx_n_s__getchunk, __pyx_k__getchunk, sizeof(__pyx_k__getchunk), 0, 0, 1, 1},
{&__pyx_n_s__getrusage, __pyx_k__getrusage, sizeof(__pyx_k__getrusage), 0, 0, 1, 1},
@@ -66215,7 +66468,7 @@ static int __Pyx_InitCachedBuiltins(void) {
__pyx_builtin_IndexError = __Pyx_GetName(__pyx_b, __pyx_n_s__IndexError); if (!__pyx_builtin_IndexError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_builtin_range = __Pyx_GetName(__pyx_b, __pyx_n_s__range); if (!__pyx_builtin_range) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_builtin_TypeError = __Pyx_GetName(__pyx_b, __pyx_n_s__TypeError); if (!__pyx_builtin_TypeError) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 109; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __pyx_builtin_enumerate = __Pyx_GetName(__pyx_b, __pyx_n_s__enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 78; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_builtin_enumerate = __Pyx_GetName(__pyx_b, __pyx_n_s__enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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__Pyx_INCREF(((PyObject *)__pyx_n_s__filename));
- PyTuple_SET_ITEM(__pyx_k_tuple_136, 0, ((PyObject *)__pyx_n_s__filename));
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__Pyx_INCREF(((PyObject *)__pyx_n_s__filename));
- PyTuple_SET_ITEM(__pyx_k_tuple_136, 1, ((PyObject *)__pyx_n_s__filename));
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+ __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_135));
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/* "_sa.pyx":15
* return open(filename)
@@ -67009,12 +67262,12 @@ static int __Pyx_InitCachedConstants(void) {
*
* include "float_list.pxi"
*/
- __pyx_k_tuple_140 = PyTuple_New(1); if (unlikely(!__pyx_k_tuple_140)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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- __Pyx_INCREF(((PyObject *)__pyx_kp_s_139));
- PyTuple_SET_ITEM(__pyx_k_tuple_140, 0, ((PyObject *)__pyx_kp_s_139));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_139));
- __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_140));
+ __pyx_k_tuple_139 = PyTuple_New(1); if (unlikely(!__pyx_k_tuple_139)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __Pyx_GOTREF(__pyx_k_tuple_139);
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_138));
+ PyTuple_SET_ITEM(__pyx_k_tuple_139, 0, ((PyObject *)__pyx_kp_s_138));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_138));
+ __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_139));
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* return ALPHABET.fromstring(string, terminal)
@@ -67023,25 +67276,25 @@ static int __Pyx_InitCachedConstants(void) {
* word_ids = (sym_fromstring(word, True) for word in words)
* return tuple(((word, None, 1), ) for word in word_ids)
*/
- __pyx_k_tuple_141 = PyTuple_New(5); if (unlikely(!__pyx_k_tuple_141)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 107; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __Pyx_GOTREF(__pyx_k_tuple_141);
+ __pyx_k_tuple_140 = PyTuple_New(5); if (unlikely(!__pyx_k_tuple_140)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 107; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __Pyx_GOTREF(__pyx_k_tuple_140);
__Pyx_INCREF(((PyObject *)__pyx_n_s__words));
- PyTuple_SET_ITEM(__pyx_k_tuple_141, 0, ((PyObject *)__pyx_n_s__words));
+ PyTuple_SET_ITEM(__pyx_k_tuple_140, 0, ((PyObject *)__pyx_n_s__words));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__words));
__Pyx_INCREF(((PyObject *)__pyx_n_s__word_ids));
- PyTuple_SET_ITEM(__pyx_k_tuple_141, 1, ((PyObject *)__pyx_n_s__word_ids));
+ PyTuple_SET_ITEM(__pyx_k_tuple_140, 1, ((PyObject *)__pyx_n_s__word_ids));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__word_ids));
__Pyx_INCREF(((PyObject *)__pyx_n_s__genexpr));
- PyTuple_SET_ITEM(__pyx_k_tuple_141, 2, ((PyObject *)__pyx_n_s__genexpr));
+ PyTuple_SET_ITEM(__pyx_k_tuple_140, 2, ((PyObject *)__pyx_n_s__genexpr));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__genexpr));
__Pyx_INCREF(((PyObject *)__pyx_n_s__genexpr));
- PyTuple_SET_ITEM(__pyx_k_tuple_141, 3, ((PyObject *)__pyx_n_s__genexpr));
+ PyTuple_SET_ITEM(__pyx_k_tuple_140, 3, ((PyObject *)__pyx_n_s__genexpr));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__genexpr));
__Pyx_INCREF(((PyObject *)__pyx_n_s__genexpr));
- PyTuple_SET_ITEM(__pyx_k_tuple_141, 4, ((PyObject *)__pyx_n_s__genexpr));
+ PyTuple_SET_ITEM(__pyx_k_tuple_140, 4, ((PyObject *)__pyx_n_s__genexpr));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__genexpr));
- __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_141));
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+ __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_140));
+ __pyx_k_codeobj_141 = (PyObject*)__Pyx_PyCode_New(1, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_140, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_142, __pyx_n_s__make_lattice, 107, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_141)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 107; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi":111
* return tuple(((word, None, 1), ) for word in word_ids)
@@ -67050,19 +67303,19 @@ static int __Pyx_InitCachedConstants(void) {
* return tuple((sym_tostring(sym), weight, dist) for (sym, weight, dist) in arc
* for arc in node for node in lattice)
*/
- __pyx_k_tuple_144 = PyTuple_New(3); if (unlikely(!__pyx_k_tuple_144)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 111; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __Pyx_GOTREF(__pyx_k_tuple_144);
+ __pyx_k_tuple_143 = PyTuple_New(3); if (unlikely(!__pyx_k_tuple_143)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 111; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __Pyx_GOTREF(__pyx_k_tuple_143);
__Pyx_INCREF(((PyObject *)__pyx_n_s__lattice));
- PyTuple_SET_ITEM(__pyx_k_tuple_144, 0, ((PyObject *)__pyx_n_s__lattice));
+ PyTuple_SET_ITEM(__pyx_k_tuple_143, 0, ((PyObject *)__pyx_n_s__lattice));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__lattice));
__Pyx_INCREF(((PyObject *)__pyx_n_s__genexpr));
- PyTuple_SET_ITEM(__pyx_k_tuple_144, 1, ((PyObject *)__pyx_n_s__genexpr));
+ PyTuple_SET_ITEM(__pyx_k_tuple_143, 1, ((PyObject *)__pyx_n_s__genexpr));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__genexpr));
__Pyx_INCREF(((PyObject *)__pyx_n_s__genexpr));
- PyTuple_SET_ITEM(__pyx_k_tuple_144, 2, ((PyObject *)__pyx_n_s__genexpr));
+ PyTuple_SET_ITEM(__pyx_k_tuple_143, 2, ((PyObject *)__pyx_n_s__genexpr));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__genexpr));
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- __pyx_k_codeobj_145 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_144, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_143, __pyx_n_s__decode_lattice, 111, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_145)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 111; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_143));
+ __pyx_k_codeobj_144 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_143, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_142, __pyx_n_s__decode_lattice, 111, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_144)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 111; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi":115
* for arc in node for node in lattice)
@@ -67070,19 +67323,19 @@ static int __Pyx_InitCachedConstants(void) {
* def decode_sentence(lattice): # <<<<<<<<<<<<<<
* return tuple(sym_tostring(sym) for ((sym, _, _),) in lattice)
*/
- __pyx_k_tuple_146 = PyTuple_New(3); if (unlikely(!__pyx_k_tuple_146)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 115; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __Pyx_GOTREF(__pyx_k_tuple_146);
+ __pyx_k_tuple_145 = PyTuple_New(3); if (unlikely(!__pyx_k_tuple_145)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 115; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __Pyx_GOTREF(__pyx_k_tuple_145);
__Pyx_INCREF(((PyObject *)__pyx_n_s__lattice));
- PyTuple_SET_ITEM(__pyx_k_tuple_146, 0, ((PyObject *)__pyx_n_s__lattice));
+ PyTuple_SET_ITEM(__pyx_k_tuple_145, 0, ((PyObject *)__pyx_n_s__lattice));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__lattice));
__Pyx_INCREF(((PyObject *)__pyx_n_s__genexpr));
- PyTuple_SET_ITEM(__pyx_k_tuple_146, 1, ((PyObject *)__pyx_n_s__genexpr));
+ PyTuple_SET_ITEM(__pyx_k_tuple_145, 1, ((PyObject *)__pyx_n_s__genexpr));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__genexpr));
__Pyx_INCREF(((PyObject *)__pyx_n_s__genexpr));
- PyTuple_SET_ITEM(__pyx_k_tuple_146, 2, ((PyObject *)__pyx_n_s__genexpr));
+ PyTuple_SET_ITEM(__pyx_k_tuple_145, 2, ((PyObject *)__pyx_n_s__genexpr));
__Pyx_GIVEREF(((PyObject *)__pyx_n_s__genexpr));
- __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_146));
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+ __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_145));
+ __pyx_k_codeobj_146 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_145, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_142, __pyx_n_s__decode_sentence, 115, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_146)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 115; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_RefNannyFinishContext();
return 0;
__pyx_L1_error:;
@@ -67350,9 +67603,9 @@ PyMODINIT_FUNC PyInit__sa(void)
__pyx_ptype_3_sa_Scorer = &__pyx_type_3_sa_Scorer;
if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct____iter__) < 0) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 81; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_3_sa___pyx_scope_struct____iter__ = &__pyx_type_3_sa___pyx_scope_struct____iter__;
- if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_1_read_bitext) < 0) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 71; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_1_read_bitext) < 0) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 72; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_3_sa___pyx_scope_struct_1_read_bitext = &__pyx_type_3_sa___pyx_scope_struct_1_read_bitext;
- if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_2_genexpr) < 0) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_2_genexpr) < 0) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 74; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_3_sa___pyx_scope_struct_2_genexpr = &__pyx_type_3_sa___pyx_scope_struct_2_genexpr;
if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_3_compute_stats) < 0) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_3_sa___pyx_scope_struct_3_compute_stats = &__pyx_type_3_sa___pyx_scope_struct_3_compute_stats;
@@ -67448,7 +67701,7 @@ PyMODINIT_FUNC PyInit__sa(void)
__pyx_t_2 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__getLogger); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
- __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_140), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_139), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_1);
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
if (PyObject_SetAttr(__pyx_m, __pyx_n_s__logger, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -67731,7 +67984,7 @@ PyMODINIT_FUNC PyInit__sa(void)
*
* cdef class TrieNode:
*/
- __pyx_v_3_sa_EPSILON = __pyx_f_3_sa_sym_fromstring(__pyx_k_148, 1);
+ __pyx_v_3_sa_EPSILON = __pyx_f_3_sa_sym_fromstring(__pyx_k_147, 1);
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":55
* cdef public int count
@@ -67742,7 +67995,7 @@ PyMODINIT_FUNC PyInit__sa(void)
*/
__pyx_t_1 = __Pyx_PyBool_FromLong(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_1);
- __pyx_k_100 = __pyx_t_1;
+ __pyx_k_99 = __pyx_t_1;
__Pyx_GIVEREF(__pyx_t_1);
__pyx_t_1 = 0;
diff --git a/python/src/sa/data_array.pxi b/python/src/sa/data_array.pxi
index 371708c5..2a8ea921 100644
--- a/python/src/sa/data_array.pxi
+++ b/python/src/sa/data_array.pxi
@@ -7,11 +7,11 @@ from libc.stdlib cimport malloc, realloc, free
from libc.string cimport memset, strcpy
cdef class DataArray:
- cdef word2id
- cdef id2word
+ cdef public word2id
+ cdef public id2word
cdef public IntList data
cdef public IntList sent_id
- cdef IntList sent_index
+ cdef public IntList sent_index
cdef bint use_sent_id
def __cinit__(self, from_binary=None, from_text=None, side=None, bint use_sent_id=False):
@@ -44,17 +44,18 @@ cdef class DataArray:
sent.append(self.id2word[self.data.arr[i]])
return sent
- def get_sentence_position(self, loc):
- return loc - self.sent_index.arr[self.sent_id.arr[loc]]
-
def get_id(self, word):
if not word in self.word2id:
self.word2id[word] = len(self.id2word)
self.id2word.append(word)
return self.word2id[word]
- def get_word(self, id):
- return self.id2word[id]
+ def __getitem__(self, loc):
+ return self.id2word[self.data.arr[loc]]
+
+ def get_sentence_bounds(self, loc):
+ cdef int sid = self.sent_id.arr[loc]
+ return (self.sent_index.arr[sid], self.sent_index.arr[sid+1])
def write_text(self, char* filename):
with open(filename, "w") as f:
diff --git a/python/src/sa/suffix_array.pxi b/python/src/sa/suffix_array.pxi
index baa3d546..de4adcd9 100644
--- a/python/src/sa/suffix_array.pxi
+++ b/python/src/sa/suffix_array.pxi
@@ -20,15 +20,6 @@ cdef class SuffixArray:
def __getitem__(self, i):
return self.sa.arr[i]
- def get_sentence_id(self, i):
- return self.darray.get_sentence_id(i)
-
- def get_sentence(self, i):
- return self.darray.get_sentence(i)
-
- def get_sentence_position(self, loc):
- return self.darray.get_sentence_position(loc)
-
def read_text(self, filename, side):
'''Constructs suffix array using the algorithm
of Larsson & Sadahkane (1999)'''