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Diffstat (limited to 'python/src/sa/rulefactory.pxi')
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diff --git a/python/src/sa/rulefactory.pxi b/python/src/sa/rulefactory.pxi new file mode 100644 index 00000000..1c8d25a4 --- /dev/null +++ b/python/src/sa/rulefactory.pxi @@ -0,0 +1,1793 @@ +# Implementation of the algorithms described in +# Lopez, EMNLP-CoNLL 2007 +# Much faster than the Python numbers reported there. +# Note to reader: this code is closer to C than Python +import gc + +from libc.stdlib cimport malloc, realloc, free +from libc.string cimport memset, memcpy +from libc.math cimport fmod, ceil, floor, log + +cdef int PRECOMPUTE = 0 +cdef int MERGE = 1 +cdef int BAEZA_YATES = 2 + +# NOTE: was encoded as a non-terminal in the previous version +cdef int EPSILON = sym_fromstring('*EPS*', True) + +cdef class TrieNode: + cdef public children + + def __cinit__(self): + self.children = {} + +cdef class ExtendedTrieNode(TrieNode): + cdef public phrase + cdef public phrase_location + cdef public suffix_link + + def __cinit__(self, phrase=None, phrase_location=None, suffix_link=None): + self.phrase = phrase + self.phrase_location = phrase_location + self.suffix_link = suffix_link + + +cdef class TrieTable: + cdef public int extended + cdef public int count + cdef public root + def __cinit__(self, extended=False): + self.count = 0 + self.extended = extended + if extended: + self.root = ExtendedTrieNode() + else: + self.root = TrieNode() + +# linked list structure for storing matches in BaselineRuleFactory +cdef struct match_node: + int* match + match_node* next + +# encodes information needed to find a (hierarchical) phrase +# in the text. If phrase is contiguous, that's just a range +# in the suffix array; if discontiguous, it is the set of +# actual locations (packed into an array) +cdef class PhraseLocation: + cdef int sa_low + cdef int sa_high + cdef int arr_low + cdef int arr_high + cdef IntList arr + cdef int num_subpatterns + + # returns true if sent_id is contained + cdef int contains(self, int sent_id): + return 1 + + def __cinit__(self, int sa_low=-1, int sa_high=-1, int arr_low=-1, int arr_high=-1, + arr=None, int num_subpatterns=1): + self.sa_low = sa_low + self.sa_high = sa_high + self.arr_low = arr_low + self.arr_high = arr_high + self.arr = arr + self.num_subpatterns = num_subpatterns + + + +cdef class Sampler: + '''A Sampler implements a logic for choosing + samples from a population range''' + + cdef int sample_size + cdef IntList sa + + def __cinit__(self, int sample_size, SuffixArray fsarray): + self.sample_size = sample_size + self.sa = fsarray.sa + if sample_size > 0: + logger.info("Sampling strategy: uniform, max sample size = %d", sample_size) + else: + logger.info("Sampling strategy: no sampling") + + def sample(self, PhraseLocation phrase_location): + '''Returns a sample of the locations for + the phrase. If there are less than self.sample_size + locations, return all of them; otherwise, return + up to self.sample_size locations. In the latter case, + we choose to sample UNIFORMLY -- that is, the locations + are chosen at uniform intervals over the entire set, rather + than randomly. This makes the algorithm deterministic, which + is good for things like MERT''' + cdef IntList sample + cdef double i, stepsize + cdef int num_locations, val, j + + sample = IntList() + if phrase_location.arr is None: + num_locations = phrase_location.sa_high - phrase_location.sa_low + if self.sample_size == -1 or num_locations <= self.sample_size: + sample._extend_arr(self.sa.arr + phrase_location.sa_low, num_locations) + else: + stepsize = float(num_locations)/float(self.sample_size) + i = phrase_location.sa_low + while i < phrase_location.sa_high and sample.len < self.sample_size: + '''Note: int(i) not guaranteed to have the desired + effect, according to the python documentation''' + if fmod(i,1.0) > 0.5: + val = int(ceil(i)) + else: + val = int(floor(i)) + sample._append(self.sa.arr[val]) + i = i + stepsize + else: + num_locations = (phrase_location.arr_high - phrase_location.arr_low) / phrase_location.num_subpatterns + if self.sample_size == -1 or num_locations <= self.sample_size: + sample = phrase_location.arr + else: + stepsize = float(num_locations)/float(self.sample_size) + i = phrase_location.arr_low + while i < num_locations and sample.len < self.sample_size * phrase_location.num_subpatterns: + '''Note: int(i) not guaranteed to have the desired + effect, according to the python documentation''' + if fmod(i,1.0) > 0.5: + val = int(ceil(i)) + else: + val = int(floor(i)) + j = phrase_location.arr_low + (val*phrase_location.num_subpatterns) + sample._extend_arr(phrase_location.arr.arr + j, phrase_location.num_subpatterns) + i = i + stepsize + return sample + + +# struct used to encapsulate a single matching +cdef struct Matching: + int* arr + int start + int end + int sent_id + int size + + +cdef void assign_matching(Matching* m, int* arr, int start, int step, int* sent_id_arr): + m.arr = arr + m.start = start + m.end = start + step + m.sent_id = sent_id_arr[arr[start]] + m.size = step + + +cdef int* append_combined_matching(int* arr, Matching* loc1, Matching* loc2, + int offset_by_one, int num_subpatterns, int* result_len): + cdef int i, new_len + + new_len = result_len[0] + num_subpatterns + arr = <int*> realloc(arr, new_len*sizeof(int)) + + for i from 0 <= i < loc1.size: + arr[result_len[0]+i] = loc1.arr[loc1.start+i] + if num_subpatterns > loc1.size: + arr[new_len-1] = loc2.arr[loc2.end-1] + result_len[0] = new_len + return arr + + +cdef int* extend_arr(int* arr, int* arr_len, int* appendix, int appendix_len): + cdef int new_len + + new_len = arr_len[0] + appendix_len + arr = <int*> realloc(arr, new_len*sizeof(int)) + memcpy(arr+arr_len[0], appendix, appendix_len*sizeof(int)) + arr_len[0] = new_len + return arr + +cdef int median(int low, int high, int step): + return low + (((high - low)/step)/2)*step + + +cdef void find_comparable_matchings(int low, int high, int* arr, int step, int loc, int* loc_minus, int* loc_plus): + # Returns (minus, plus) indices for the portion of the array + # in which all matchings have the same first index as the one + # starting at loc + loc_plus[0] = loc + step + while loc_plus[0] < high and arr[loc_plus[0]] == arr[loc]: + loc_plus[0] = loc_plus[0] + step + loc_minus[0] = loc + while loc_minus[0]-step >= low and arr[loc_minus[0]-step] == arr[loc]: + loc_minus[0] = loc_minus[0] - step + + +cdef class HieroCachingRuleFactory: + '''This RuleFactory implements a caching + method using TrieTable, which makes phrase + generation somewhat speedier -- phrases only + need to be extracted once (however, it is + quite possible they need to be scored + for each input sentence, for contextual models)''' + + cdef TrieTable rules + cdef Sampler sampler + + cdef int max_chunks + cdef int max_target_chunks + cdef int max_length + cdef int max_target_length + cdef int max_nonterminals + cdef int max_initial_size + cdef int train_max_initial_size + cdef int min_gap_size + cdef int train_min_gap_size + cdef int category + + cdef precomputed_index + cdef precomputed_collocations + cdef precompute_file + cdef max_rank + cdef int precompute_rank, precompute_secondary_rank + cdef bint use_baeza_yates + cdef bint use_index + cdef bint use_collocations + cdef float by_slack_factor + + cdef prev_norm_prefix + cdef float extract_time + cdef SuffixArray fsa + cdef DataArray fda + cdef DataArray eda + + cdef Alignment alignment + cdef IntList eid2symid + cdef IntList fid2symid + cdef int tight_phrases + cdef int require_aligned_terminal + cdef int require_aligned_chunks + + cdef IntList findexes + cdef IntList findexes1 + + def __cinit__(self, + # compiled alignment object (REQUIRED) + Alignment alignment, + # parameter for double-binary search; doesn't seem to matter much + float by_slack_factor=1.0, + # name of generic nonterminal used by Hiero + char* category="[X]", + # maximum number of contiguous chunks of terminal symbols in RHS of a rule. If None, defaults to max_nonterminals+1 + max_chunks=None, + # maximum span of a grammar rule in TEST DATA + unsigned max_initial_size=10, + # maximum number of symbols (both T and NT) allowed in a rule + unsigned max_length=5, + # maximum number of nonterminals allowed in a rule (set >2 at your own risk) + unsigned max_nonterminals=2, + # maximum number of contiguous chunks of terminal symbols in target-side RHS of a rule. If None, defaults to max_nonterminals+1 + max_target_chunks=None, + # maximum number of target side symbols (both T and NT) allowed in a rule. If None, defaults to max_initial_size + max_target_length=None, + # minimum span of a nonterminal in the RHS of a rule in TEST DATA + unsigned min_gap_size=2, + # filename of file containing precomputed collocations + precompute_file=None, + # maximum frequency rank of patterns used to compute triples (don't set higher than 20). + unsigned precompute_secondary_rank=20, + # maximum frequency rank of patterns used to compute collocations (no need to set higher than maybe 200-300) + unsigned precompute_rank=100, + # require extracted rules to have at least one aligned word + bint require_aligned_terminal=True, + # require each contiguous chunk of extracted rules to have at least one aligned word + bint require_aligned_chunks=False, + # maximum span of a grammar rule extracted from TRAINING DATA + unsigned train_max_initial_size=10, + # minimum span of an RHS nonterminal in a rule extracted from TRAINING DATA + unsigned train_min_gap_size=2, + # True if phrases should be tight, False otherwise (False == slower but better results) + bint tight_phrases=False, + # True to require use of double-binary alg, false otherwise + bint use_baeza_yates=True, + # True to enable used of precomputed collocations + bint use_collocations=True, + # True to enable use of precomputed inverted indices + bint use_index=True): + '''Note: we make a distinction between the min_gap_size + and max_initial_size used in test and train. The latter + are represented by train_min_gap_size and train_max_initial_size, + respectively. This is because Chiang's model does not require + them to be the same, therefore we don't either.''' + self.rules = TrieTable(True) # cache + self.rules.root = ExtendedTrieNode(phrase_location=PhraseLocation()) + if alignment is None: + raise Exception("Must specify an alignment object") + self.alignment = alignment + + # grammar parameters and settings + # NOTE: setting max_nonterminals > 2 is not currently supported in Hiero + self.max_length = max_length + self.max_nonterminals = max_nonterminals + self.max_initial_size = max_initial_size + self.train_max_initial_size = train_max_initial_size + self.min_gap_size = min_gap_size + self.train_min_gap_size = train_min_gap_size + self.category = sym_fromstring(category, False) + + if max_chunks is None: + self.max_chunks = self.max_nonterminals + 1 + else: + self.max_chunks = max_chunks + + if max_target_chunks is None: + self.max_target_chunks = self.max_nonterminals + 1 + else: + self.max_target_chunks = max_target_chunks + + if max_target_length is None: + self.max_target_length = max_initial_size + else: + self.max_target_length = max_target_length + + # algorithmic parameters and settings + self.precomputed_collocations = {} + self.precomputed_index = {} + self.use_index = use_index + self.use_collocations = use_collocations + self.max_rank = {} + self.precompute_file = precompute_file + self.precompute_rank = precompute_rank + self.precompute_secondary_rank = precompute_secondary_rank + self.use_baeza_yates = use_baeza_yates + self.by_slack_factor = by_slack_factor + if tight_phrases: + self.tight_phrases = 1 + else: + self.tight_phrases = 0 + + if require_aligned_chunks: + # one condition is a stronger version of the other. + self.require_aligned_chunks = 1 + self.require_aligned_terminal = 1 + elif require_aligned_terminal: + self.require_aligned_chunks = 0 + self.require_aligned_terminal = 1 + else: + self.require_aligned_chunks = 0 + self.require_aligned_terminal = 0 + + + # diagnostics + self.prev_norm_prefix = () + + self.findexes = IntList(initial_len=10) + self.findexes1 = IntList(initial_len=10) + + def configure(self, SuffixArray fsarray, DataArray edarray, Sampler sampler): + '''This gives the RuleFactory access to the Context object. + Here we also use it to precompute the most expensive intersections + in the corpus quickly.''' + self.fsa = fsarray + self.fda = fsarray.darray + self.eda = edarray + self.fid2symid = self.set_idmap(self.fda) + self.eid2symid = self.set_idmap(self.eda) + self.precompute() + self.sampler = sampler + + cdef set_idmap(self, DataArray darray): + cdef int word_id, new_word_id, N + cdef IntList idmap + + N = len(darray.id2word) + idmap = IntList(initial_len=N) + for word_id from 0 <= word_id < N: + new_word_id = sym_fromstring(darray.id2word[word_id], True) + idmap.arr[word_id] = new_word_id + return idmap + + + def pattern2phrase(self, pattern): + # pattern is a tuple, which we must convert to a hiero Phrase + result = () + arity = 0 + for word_id in pattern: + if word_id == -1: + arity = arity + 1 + new_id = sym_setindex(self.category, arity) + else: + new_id = sym_fromstring(self.fda.id2word[word_id], True) + result = result + (new_id,) + return Phrase(result) + + def pattern2phrase_plus(self, pattern): + # returns a list containing both the pattern, and pattern + # suffixed/prefixed with the NT category. + patterns = [] + result = () + arity = 0 + for word_id in pattern: + if word_id == -1: + arity = arity + 1 + new_id = sym_setindex(self.category, arity) + else: + new_id = sym_fromstring(self.fda.id2word[word_id], True) + result = result + (new_id,) + patterns.append(Phrase(result)) + patterns.append(Phrase(result + (sym_setindex(self.category, 1),))) + patterns.append(Phrase((sym_setindex(self.category, 1),) + result)) + return patterns + + def precompute(self): + cdef Precomputation pre + + if self.precompute_file is not None: + start_time = monitor_cpu() + logger.info("Reading precomputed data from file %s... ", self.precompute_file) + pre = Precomputation(from_binary=self.precompute_file) + # check parameters of precomputation -- some are critical and some are not + if pre.max_nonterminals != self.max_nonterminals: + logger.warn("Precomputation done with max nonterminals %d, decoder uses %d", pre.max_nonterminals, self.max_nonterminals) + if pre.max_length != self.max_length: + logger.warn("Precomputation done with max terminals %d, decoder uses %d", pre.max_length, self.max_length) + if pre.train_max_initial_size != self.train_max_initial_size: + raise Exception("Precomputation done with max initial size %d, decoder uses %d" % (pre.train_max_initial_size, self.train_max_initial_size)) + if pre.train_min_gap_size != self.train_min_gap_size: + raise Exception("Precomputation done with min gap size %d, decoder uses %d" % (pre.train_min_gap_size, self.train_min_gap_size)) + if self.use_index: + logger.info("Converting %d hash keys on precomputed inverted index... ", len(pre.precomputed_index)) + for pattern, arr in pre.precomputed_index.iteritems(): + phrases = self.pattern2phrase_plus(pattern) + for phrase in phrases: + self.precomputed_index[phrase] = arr + if self.use_collocations: + logger.info("Converting %d hash keys on precomputed collocations... ", len(pre.precomputed_collocations)) + for pattern, arr in pre.precomputed_collocations.iteritems(): + phrase = self.pattern2phrase(pattern) + self.precomputed_collocations[phrase] = arr + stop_time = monitor_cpu() + logger.info("Processing precomputations took %f seconds", stop_time - start_time) + + + def get_precomputed_collocation(self, phrase): + if phrase in self.precomputed_collocations: + arr = self.precomputed_collocations[phrase] + return PhraseLocation(arr=arr, arr_low=0, arr_high=len(arr), num_subpatterns=phrase.arity()+1) + return None + + + cdef int* baeza_yates_helper(self, int low1, int high1, int* arr1, int step1, + int low2, int high2, int* arr2, int step2, + int offset_by_one, int len_last, int num_subpatterns, int* result_len): + cdef int i1, i2, j1, j2, med1, med2, med1_plus, med1_minus, med2_minus, med2_plus + cdef int d_first, qsetsize, dsetsize, tmp, search_low, search_high + cdef int med_result_len, low_result_len, high_result_len + cdef long comparison + cdef int* result + cdef int* low_result + cdef int* med_result + cdef int* high_result + cdef Matching loc1, loc2 + + result = <int*> malloc(0*sizeof(int*)) + + d_first = 0 + if high1 - low1 > high2 - low2: + d_first = 1 + + # First, check to see if we are at any of the recursive base cases + # Case 1: one of the sets is empty + if low1 >= high1 or low2 >= high2: + return result + + # Case 2: sets are non-overlapping + assign_matching(&loc1, arr1, high1-step1, step1, self.fda.sent_id.arr) + assign_matching(&loc2, arr2, low2, step2, self.fda.sent_id.arr) + if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) == -1: + return result + + assign_matching(&loc1, arr1, low1, step1, self.fda.sent_id.arr) + assign_matching(&loc2, arr2, high2-step2, step2, self.fda.sent_id.arr) + if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) == 1: + return result + + # Case 3: query set and data set do not meet size mismatch constraints; + # We use mergesort instead in this case + qsetsize = (high1-low1) / step1 + dsetsize = (high2-low2) / step2 + if d_first: + tmp = qsetsize + qsetsize = dsetsize + dsetsize = tmp + + if self.by_slack_factor * qsetsize * log(dsetsize) / log(2) > dsetsize: + free(result) + return self.merge_helper(low1, high1, arr1, step1, low2, high2, arr2, step2, offset_by_one, len_last, num_subpatterns, result_len) + + # binary search. There are two flavors, depending on + # whether the queryset or dataset is first + if d_first: + med2 = median(low2, high2, step2) + assign_matching(&loc2, arr2, med2, step2, self.fda.sent_id.arr) + + search_low = low1 + search_high = high1 + while search_low < search_high: + med1 = median(search_low, search_high, step1) + find_comparable_matchings(low1, high1, arr1, step1, med1, &med1_minus, &med1_plus) + comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last) + if comparison == -1: + search_low = med1_plus + elif comparison == 1: + search_high = med1_minus + else: + break + else: + med1 = median(low1, high1, step1) + find_comparable_matchings(low1, high1, arr1, step1, med1, &med1_minus, &med1_plus) + + search_low = low2 + search_high = high2 + while search_low < search_high: + med2 = median(search_low, search_high, step2) + assign_matching(&loc2, arr2, med2, step2, self.fda.sent_id.arr) + comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last) + if comparison == -1: + search_high = med2 + elif comparison == 1: + search_low = med2 + step2 + else: + break + + med_result_len = 0 + med_result = <int*> malloc(0*sizeof(int*)) + if search_high > search_low: + # Then there is a match for the median element of Q + # What we want to find is the group of all bindings in the first set + # s.t. their first element == the first element of med1. Then we + # want to store the bindings for all of those elements. We can + # subsequently throw all of them away. + med2_minus = med2 + med2_plus = med2 + step2 + i1 = med1_minus + while i1 < med1_plus: + assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr) + while med2_minus-step2 >= low2: + assign_matching(&loc2, arr2, med2_minus-step2, step2, self.fda.sent_id.arr) + if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) < 1: + med2_minus = med2_minus - step2 + else: + break + i2 = med2_minus + while i2 < high2: + assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr) + comparison = self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) + if comparison == 0: + pass + med_result = append_combined_matching(med_result, &loc1, &loc2, offset_by_one, num_subpatterns, &med_result_len) + if comparison == -1: + break + i2 = i2 + step2 + if i2 > med2_plus: + med2_plus = i2 + i1 = i1 + step1 + + tmp = med1_minus + med1_minus = med1_plus + med1_plus = tmp + else: + # No match; need to figure out the point of division in D and Q + med2_minus = med2 + med2_plus = med2 + if d_first: + med2_minus = med2_minus + step2 + if comparison == -1: + med1_minus = med1_plus + if comparison == 1: + med1_plus = med1_minus + else: + tmp = med1_minus + med1_minus = med1_plus + med1_plus = tmp + if comparison == 1: + med2_minus = med2_minus + step2 + med2_plus = med2_plus + step2 + + low_result_len = 0 + low_result = self.baeza_yates_helper(low1, med1_plus, arr1, step1, low2, med2_plus, arr2, step2, offset_by_one, len_last, num_subpatterns, &low_result_len) + high_result_len = 0 + high_result = self.baeza_yates_helper(med1_minus, high1, arr1, step1, med2_minus, high2, arr2, step2, offset_by_one, len_last, num_subpatterns, &high_result_len) + + result = extend_arr(result, result_len, low_result, low_result_len) + result = extend_arr(result, result_len, med_result, med_result_len) + result = extend_arr(result, result_len, high_result, high_result_len) + free(low_result) + free(med_result) + free(high_result) + + return result + + + + cdef long compare_matchings_set(self, int i1_minus, int i1_plus, int* arr1, int step1, + Matching* loc2, int offset_by_one, int len_last): + """ + Compares a *set* of bindings, all with the same first element, + to a single binding. Returns -1 if all comparisons == -1, 1 if all + comparisons == 1, and 0 otherwise. + """ + cdef int i1, comparison, prev_comparison + cdef Matching l1_stack + cdef Matching* loc1 + + loc1 = &l1_stack + + i1 = i1_minus + while i1 < i1_plus: + assign_matching(loc1, arr1, i1, step1, self.fda.sent_id.arr) + comparison = self.compare_matchings(loc1, loc2, offset_by_one, len_last) + if comparison == 0: + prev_comparison = 0 + break + elif i1 == i1_minus: + prev_comparison = comparison + else: + if comparison != prev_comparison: + prev_comparison = 0 + break + i1 = i1 + step1 + return prev_comparison + + + cdef long compare_matchings(self, Matching* loc1, Matching* loc2, int offset_by_one, int len_last): + cdef int i + + if loc1.sent_id > loc2.sent_id: + return 1 + if loc2.sent_id > loc1.sent_id: + return -1 + + if loc1.size == 1 and loc2.size == 1: + if loc2.arr[loc2.start] - loc1.arr[loc1.start] <= self.train_min_gap_size: + return 1 + + elif offset_by_one: + for i from 1 <= i < loc1.size: + if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i-1]: + return 1 + if loc1.arr[loc1.start+i] < loc2.arr[loc2.start+i-1]: + return -1 + + else: + if loc1.arr[loc1.start]+1 > loc2.arr[loc2.start]: + return 1 + if loc1.arr[loc1.start]+1 < loc2.arr[loc2.start]: + return -1 + + for i from 1 <= i < loc1.size: + if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i]: + return 1 + if loc1.arr[loc1.start+i] < loc2.arr[loc2.start+i]: + return -1 + + if loc2.arr[loc2.end-1] + len_last - loc1.arr[loc1.start] > self.train_max_initial_size: + return -1 + return 0 + + + cdef int* merge_helper(self, int low1, int high1, int* arr1, int step1, + int low2, int high2, int* arr2, int step2, + int offset_by_one, int len_last, int num_subpatterns, int* result_len): + cdef int i1, i2, j1, j2 + cdef long comparison + cdef int* result + cdef Matching loc1, loc2 + + result_len[0] = 0 + result = <int*> malloc(0*sizeof(int)) + + i1 = low1 + i2 = low2 + while i1 < high1 and i2 < high2: + + # First, pop all unneeded loc2's off the stack + assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr) + while i2 < high2: + assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr) + if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) == 1: + i2 = i2 + step2 + else: + break + + # Next: process all loc1's with the same starting val + j1 = i1 + while i1 < high1 and arr1[j1] == arr1[i1]: + assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr) + j2 = i2 + while j2 < high2: + assign_matching(&loc2, arr2, j2, step2, self.fda.sent_id.arr) + comparison = self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) + if comparison == 0: + result = append_combined_matching(result, &loc1, &loc2, offset_by_one, num_subpatterns, result_len) + if comparison == 1: + pass + if comparison == -1: + break + else: + j2 = j2 + step2 + i1 = i1 + step1 + return result + + + cdef void sort_phrase_loc(self, IntList arr, PhraseLocation loc, Phrase phrase): + cdef int i, j + cdef VEB veb + cdef IntList result + + if phrase in self.precomputed_index: + loc.arr = self.precomputed_index[phrase] + else: + loc.arr = IntList(initial_len=loc.sa_high-loc.sa_low) + veb = VEB(arr.len) + for i from loc.sa_low <= i < loc.sa_high: + veb._insert(arr.arr[i]) + i = veb.veb.min_val + for j from 0 <= j < loc.sa_high-loc.sa_low: + loc.arr.arr[j] = i + i = veb._findsucc(i) + loc.arr_low = 0 + loc.arr_high = loc.arr.len + + + cdef intersect_helper(self, Phrase prefix, Phrase suffix, + PhraseLocation prefix_loc, PhraseLocation suffix_loc, int algorithm): + + cdef IntList arr1, arr2, result + cdef int low1, high1, step1, low2, high2, step2, offset_by_one, len_last, num_subpatterns, result_len + cdef int* result_ptr + + result_len = 0 + + if sym_isvar(suffix[0]): + offset_by_one = 1 + else: + offset_by_one = 0 + + len_last = len(suffix.getchunk(suffix.arity())) + + if prefix_loc.arr is None: + self.sort_phrase_loc(self.fsa.sa, prefix_loc, prefix) + arr1 = prefix_loc.arr + low1 = prefix_loc.arr_low + high1 = prefix_loc.arr_high + step1 = prefix_loc.num_subpatterns + + if suffix_loc.arr is None: + self.sort_phrase_loc(self.fsa.sa, suffix_loc, suffix) + arr2 = suffix_loc.arr + low2 = suffix_loc.arr_low + high2 = suffix_loc.arr_high + step2 = suffix_loc.num_subpatterns + + num_subpatterns = prefix.arity()+1 + + if algorithm == MERGE: + result_ptr = self.merge_helper(low1, high1, arr1.arr, step1, + low2, high2, arr2.arr, step2, + offset_by_one, len_last, num_subpatterns, &result_len) + else: + result_ptr = self.baeza_yates_helper(low1, high1, arr1.arr, step1, + low2, high2, arr2.arr, step2, + offset_by_one, len_last, num_subpatterns, &result_len) + + if result_len == 0: + free(result_ptr) + return None + else: + result = IntList() + free(result.arr) + result.arr = result_ptr + result.len = result_len + result.size = result_len + return PhraseLocation(arr_low=0, arr_high=result_len, arr=result, num_subpatterns=num_subpatterns) + + cdef loc2str(self, PhraseLocation loc): + cdef int i, j + result = "{" + i = 0 + while i < loc.arr_high: + result = result + "(" + for j from i <= j < i + loc.num_subpatterns: + result = result + ("%d " %loc.arr[j]) + result = result + ")" + i = i + loc.num_subpatterns + result = result + "}" + return result + + cdef PhraseLocation intersect(self, prefix_node, suffix_node, Phrase phrase): + cdef Phrase prefix, suffix + cdef PhraseLocation prefix_loc, suffix_loc, result + + prefix = prefix_node.phrase + suffix = suffix_node.phrase + prefix_loc = prefix_node.phrase_location + suffix_loc = suffix_node.phrase_location + + result = self.get_precomputed_collocation(phrase) + if result is not None: + intersect_method = "precomputed" + + if result is None: + if self.use_baeza_yates: + result = self.intersect_helper(prefix, suffix, prefix_loc, suffix_loc, BAEZA_YATES) + intersect_method="double binary" + else: + result = self.intersect_helper(prefix, suffix, prefix_loc, suffix_loc, MERGE) + intersect_method="merge" + return result + + def advance(self, frontier, res, fwords): + cdef unsigned na + nf = [] + for (toskip, (i, alt, pathlen)) in frontier: + spanlen = fwords[i][alt][2] + if (toskip == 0): + res.append((i, alt, pathlen)) + ni = i + spanlen + if (ni < len(fwords) and (pathlen + 1) < self.max_initial_size): + for na in range(len(fwords[ni])): + nf.append((toskip - 1, (ni, na, pathlen + 1))) + if (len(nf) > 0): + return self.advance(nf, res, fwords) + else: + return res + + def get_all_nodes_isteps_away(self, skip, i, spanlen, pathlen, fwords, next_states, reachable_buffer): + cdef unsigned alt_it + frontier = [] + if (i+spanlen+skip >= len(next_states)): + return frontier + key = tuple([i,spanlen]) + reachable = [] + if (key in reachable_buffer): + reachable = reachable_buffer[key] + else: + reachable = self.reachable(fwords, i, spanlen) + reachable_buffer[key] = reachable + for nextreachable in reachable: + for next_id in next_states[nextreachable]: + jump = self.shortest(fwords,i,next_id) + if jump < skip: + continue + if pathlen+jump <= self.max_initial_size: + for alt_id in range(len(fwords[next_id])): + if (fwords[next_id][alt_id][0] != EPSILON): + newel = (next_id,alt_id,pathlen+jump) + if newel not in frontier: + frontier.append((next_id,alt_id,pathlen+jump)) + return frontier + + def reachable(self, fwords, ifrom, dist): + ret = [] + if (ifrom >= len(fwords)): + return ret + for alt_id in range(len(fwords[ifrom])): + if (fwords[ifrom][alt_id][0] == EPSILON): + ret.extend(self.reachable(fwords,ifrom+fwords[ifrom][alt_id][2],dist)) + else: + if (dist==0): + if (ifrom not in ret): + ret.append(ifrom) + else: + for ifromchild in self.reachable(fwords,ifrom+fwords[ifrom][alt_id][2],dist-1): + if (ifromchild not in ret): + ret.append(ifromchild) + + return ret + + def shortest(self, fwords, ifrom, ito): + cdef unsigned alt_id + min = 1000 + if (ifrom > ito): + return min + if (ifrom == ito): + return 0 + for alt_id in range(len(fwords[ifrom])): + currmin = self.shortest(fwords,ifrom+fwords[ifrom][alt_id][2],ito) + if (fwords[ifrom][alt_id][0] != EPSILON): + currmin += 1 + if (currmin<min): + min = currmin + return min + + def get_next_states(self, _columns, curr_idx, min_dist=2): + result = [] + candidate = [[curr_idx,0]] + + while len(candidate) > 0: + curr = candidate.pop() + if curr[0] >= len(_columns): + continue + if curr[0] not in result and min_dist <= curr[1] <= self.max_initial_size: + result.append(curr[0]); + curr_col = _columns[curr[0]] + for alt in curr_col: + next_id = curr[0]+alt[2] + jump = 1 + if (alt[0] == EPSILON): + jump = 0 + if next_id not in result and min_dist <= curr[1]+jump <= self.max_initial_size+1: + candidate.append([next_id,curr[1]+jump]) + return sorted(result); + + def input(self, fwords, models): + '''When this function is called on the RuleFactory, + it looks up all of the rules that can be used to translate + the input sentence''' + cdef int i, j, k, flen, arity, num_subpatterns, num_samples, alt, alt_id, nualt + cdef float start_time + cdef PhraseLocation phrase_location + cdef IntList sample, chunklen + cdef Matching matching + cdef Phrase hiero_phrase + + flen = len(fwords) + start_time = monitor_cpu() + self.extract_time = 0.0 + nodes_isteps_away_buffer = {} + hit = 0 + reachable_buffer = {} + + # Do not cache between sentences + self.rules.root = ExtendedTrieNode(phrase_location=PhraseLocation()) + + frontier = [] + for i in range(len(fwords)): + for alt in range(0, len(fwords[i])): + if fwords[i][alt][0] != EPSILON: + frontier.append((i, i, alt, 0, self.rules.root, (), False)) + + xroot = None + x1 = sym_setindex(self.category, 1) + if x1 in self.rules.root.children: + xroot = self.rules.root.children[x1] + else: + xroot = ExtendedTrieNode(suffix_link=self.rules.root, phrase_location=PhraseLocation()) + self.rules.root.children[x1] = xroot + + for i in range(self.min_gap_size, len(fwords)): + for alt in range(0, len(fwords[i])): + if fwords[i][alt][0] != EPSILON: + frontier.append((i-self.min_gap_size, i, alt, self.min_gap_size, xroot, (x1,), True)) + + next_states = [] + for i in range(len(fwords)): + next_states.append(self.get_next_states(fwords,i,self.min_gap_size)) + + while len(frontier) > 0: + new_frontier = [] + for k, i, alt, pathlen, node, prefix, is_shadow_path in frontier: + word_id = fwords[i][alt][0] + spanlen = fwords[i][alt][2] + # TODO get rid of k -- pathlen is replacing it + if word_id == EPSILON: + # skipping because word_id is epsilon + if i+spanlen >= len(fwords): + continue + for nualt in range(0,len(fwords[i+spanlen])): + frontier.append((k, i+spanlen, nualt, pathlen, node, prefix, is_shadow_path)) + continue + + phrase = prefix + (word_id,) + hiero_phrase = Phrase(phrase) + arity = hiero_phrase.arity() + + lookup_required = False + if word_id in node.children: + if node.children[word_id] is None: + # Path dead-ends at this node + continue + else: + # Path continues at this node + node = node.children[word_id] + else: + if node.suffix_link is None: + # Current node is root; lookup required + lookup_required = True + else: + if word_id in node.suffix_link.children: + if node.suffix_link.children[word_id] is None: + # Suffix link reports path is dead end + node.children[word_id] = None + continue + else: + # Suffix link indicates lookup is reqired + lookup_required = True + else: + #ERROR: We never get here + raise Exception("Keyword trie error") + # checking whether lookup_required + if lookup_required: + new_node = None + if is_shadow_path: + # Extending shadow path + # on the shadow path we don't do any search, we just use info from suffix link + new_node = ExtendedTrieNode(phrase_location=node.suffix_link.children[word_id].phrase_location, + suffix_link=node.suffix_link.children[word_id], + phrase=hiero_phrase) + else: + if arity > 0: + # Intersecting because of arity > 0 + phrase_location = self.intersect(node, node.suffix_link.children[word_id], hiero_phrase) + else: + # Suffix array search + phrase_location = node.phrase_location + sa_range = self.fsa.lookup(sym_tostring(phrase[-1]), len(phrase)-1, phrase_location.sa_low, phrase_location.sa_high) + if sa_range is not None: + phrase_location = PhraseLocation(sa_low=sa_range[0], sa_high=sa_range[1]) + else: + phrase_location = None + + if phrase_location is None: + node.children[word_id] = None + # Search failed + continue + # Search succeeded + suffix_link = self.rules.root + if node.suffix_link is not None: + suffix_link = node.suffix_link.children[word_id] + new_node = ExtendedTrieNode(phrase_location=phrase_location, + suffix_link=suffix_link, + phrase=hiero_phrase) + node.children[word_id] = new_node + node = new_node + + '''Automatically add a trailing X node, if allowed -- + This should happen before we get to extraction (so that + the node will exist if needed)''' + if arity < self.max_nonterminals: + xcat_index = arity+1 + xcat = sym_setindex(self.category, xcat_index) + suffix_link_xcat_index = xcat_index + if is_shadow_path: + suffix_link_xcat_index = xcat_index-1 + suffix_link_xcat = sym_setindex(self.category, suffix_link_xcat_index) + node.children[xcat] = ExtendedTrieNode(phrase_location=node.phrase_location, + suffix_link=node.suffix_link.children[suffix_link_xcat], + phrase= Phrase(phrase + (xcat,))) + + # sample from range + if not is_shadow_path: + sample = self.sampler.sample(node.phrase_location) + num_subpatterns = (<PhraseLocation> node.phrase_location).num_subpatterns + chunklen = IntList(initial_len=num_subpatterns) + for j from 0 <= j < num_subpatterns: + chunklen.arr[j] = hiero_phrase.chunklen(j) + extracts = [] + j = 0 + extract_start = monitor_cpu() + while j < sample.len: + extract = [] + + assign_matching(&matching, sample.arr, j, num_subpatterns, self.fda.sent_id.arr) + extract = self.extract(hiero_phrase, &matching, chunklen.arr, num_subpatterns) + extracts.extend(extract) + j = j + num_subpatterns + + num_samples = sample.len/num_subpatterns + extract_stop = monitor_cpu() + self.extract_time = self.extract_time + extract_stop - extract_start + if len(extracts) > 0: + fphrases = {} + fals = {} + fcount = {} + for f, e, count, als in extracts: + fcount.setdefault(f, 0.0) + fcount[f] = fcount[f] + count + fphrases.setdefault(f, {}) + fphrases[f].setdefault(e, {}) + fphrases[f][e].setdefault(als,0.0) + fphrases[f][e][als] = fphrases[f][e][als] + count + for f, elist in fphrases.iteritems(): + f_margin = fcount[f] + for e, alslist in elist.iteritems(): + alignment = None + count = 0 + for als, currcount in alslist.iteritems(): + if currcount > count: + alignment = als + count = currcount + scores = [] + for model in models: + scores.append(model(f, e, count, fcount[f], num_samples)) + yield Rule(self.category, f, e, + scores=scores, word_alignments=alignment) + + if len(phrase) < self.max_length and i+spanlen < len(fwords) and pathlen+1 <= self.max_initial_size: + for alt_id in range(len(fwords[i+spanlen])): + new_frontier.append((k, i+spanlen, alt_id, pathlen + 1, node, phrase, is_shadow_path)) + num_subpatterns = arity + if not is_shadow_path: + num_subpatterns = num_subpatterns + 1 + if len(phrase)+1 < self.max_length and arity < self.max_nonterminals and num_subpatterns < self.max_chunks: + xcat = sym_setindex(self.category, arity+1) + xnode = node.children[xcat] + # I put spanlen=1 below + key = tuple([self.min_gap_size, i, 1, pathlen]) + frontier_nodes = [] + if (key in nodes_isteps_away_buffer): + frontier_nodes = nodes_isteps_away_buffer[key] + else: + frontier_nodes = self.get_all_nodes_isteps_away(self.min_gap_size, i, 1, pathlen, fwords, next_states, reachable_buffer) + nodes_isteps_away_buffer[key] = frontier_nodes + + for (i, alt, pathlen) in frontier_nodes: + new_frontier.append((k, i, alt, pathlen, xnode, phrase +(xcat,), is_shadow_path)) + frontier = new_frontier + + stop_time = monitor_cpu() + logger.info("Total time for rule lookup, extraction, and scoring = %f seconds", (stop_time - start_time)) + gc.collect() + logger.info(" Extract time = %f seconds", self.extract_time) + + + cdef int find_fixpoint(self, + int f_low, f_high, + int* f_links_low, int* f_links_high, + int* e_links_low, int* e_links_high, + int e_in_low, int e_in_high, + int* e_low, int* e_high, + int* f_back_low, int* f_back_high, + int f_sent_len, int e_sent_len, + int max_f_len, int max_e_len, + int min_fx_size, int min_ex_size, + int max_new_x, + int allow_low_x, int allow_high_x, + int allow_arbitrary_x, int write_log): + cdef int e_low_prev, e_high_prev, f_low_prev, f_high_prev, new_x, new_low_x, new_high_x + + e_low[0] = e_in_low + e_high[0] = e_in_high + self.find_projection(f_low, f_high, f_links_low, f_links_high, e_low, e_high) + if e_low[0] == -1: + # low-priority corner case: if phrase w is unaligned, + # but we don't require aligned terminals, then returning + # an error here might prevent extraction of allowed + # rule X -> X_1 w X_2 / X_1 X_2. This is probably + # not worth the bother, though. + return 0 + elif e_in_low != -1 and e_low[0] != e_in_low: + if e_in_low - e_low[0] < min_ex_size: + e_low[0] = e_in_low - min_ex_size + if e_low[0] < 0: + return 0 + + if e_high[0] - e_low[0] > max_e_len: + return 0 + elif e_in_high != -1 and e_high[0] != e_in_high: + if e_high[0] - e_in_high < min_ex_size: + e_high[0] = e_in_high + min_ex_size + if e_high[0] > e_sent_len: + return 0 + + f_back_low[0] = -1 + f_back_high[0] = -1 + f_low_prev = f_low + f_high_prev = f_high + new_x = 0 + new_low_x = 0 + new_high_x = 0 + + while True: + + if f_back_low[0] == -1: + self.find_projection(e_low[0], e_high[0], e_links_low, e_links_high, f_back_low, f_back_high) + else: + self.find_projection(e_low[0], e_low_prev, e_links_low, e_links_high, f_back_low, f_back_high) + self.find_projection(e_high_prev, e_high[0], e_links_low, e_links_high, f_back_low, f_back_high) + + if f_back_low[0] > f_low: + f_back_low[0] = f_low + + if f_back_high[0] < f_high: + f_back_high[0] = f_high + + if f_back_low[0] == f_low_prev and f_back_high[0] == f_high_prev: + return 1 + + if allow_low_x == 0 and f_back_low[0] < f_low: + # FAIL: f phrase is not tight + return 0 + + if f_back_high[0] - f_back_low[0] > max_f_len: + # FAIL: f back projection is too wide + return 0 + + if allow_high_x == 0 and f_back_high[0] > f_high: + # FAIL: extension on high side not allowed + return 0 + + if f_low != f_back_low[0]: + if new_low_x == 0: + if new_x >= max_new_x: + # FAIL: extension required on low side violates max # of gaps + return 0 + else: + new_x = new_x + 1 + new_low_x = 1 + if f_low - f_back_low[0] < min_fx_size: + f_back_low[0] = f_low - min_fx_size + if f_back_high[0] - f_back_low[0] > max_f_len: + # FAIL: extension required on low side violates max initial length + return 0 + if f_back_low[0] < 0: + # FAIL: extension required on low side violates sentence boundary + return 0 + + if f_high != f_back_high[0]: + if new_high_x == 0: + if new_x >= max_new_x: + # FAIL: extension required on high side violates max # of gaps + return 0 + else: + new_x = new_x + 1 + new_high_x = 1 + if f_back_high[0] - f_high < min_fx_size: + f_back_high[0] = f_high + min_fx_size + if f_back_high[0] - f_back_low[0] > max_f_len: + # FAIL: extension required on high side violates max initial length + return 0 + if f_back_high[0] > f_sent_len: + # FAIL: extension required on high side violates sentence boundary + return 0 + + e_low_prev = e_low[0] + e_high_prev = e_high[0] + + self.find_projection(f_back_low[0], f_low_prev, f_links_low, f_links_high, e_low, e_high) + self.find_projection(f_high_prev, f_back_high[0], f_links_low, f_links_high, e_low, e_high) + if e_low[0] == e_low_prev and e_high[0] == e_high_prev: + return 1 + if allow_arbitrary_x == 0: + # FAIL: arbitrary expansion not permitted + return 0 + if e_high[0] - e_low[0] > max_e_len: + # FAIL: re-projection violates sentence max phrase length + return 0 + f_low_prev = f_back_low[0] + f_high_prev = f_back_high[0] + + + cdef find_projection(self, int in_low, int in_high, int* in_links_low, int* in_links_high, + int* out_low, int* out_high): + cdef int i + for i from in_low <= i < in_high: + if in_links_low[i] != -1: + if out_low[0] == -1 or in_links_low[i] < out_low[0]: + out_low[0] = in_links_low[i] + if out_high[0] == -1 or in_links_high[i] > out_high[0]: + out_high[0] = in_links_high[i] + + + cdef int* int_arr_extend(self, int* arr, int* arr_len, int* data, int data_len): + cdef int new_len + new_len = arr_len[0] + data_len + arr = <int*> realloc(arr, new_len*sizeof(int)) + memcpy(arr+arr_len[0], data, data_len*sizeof(int)) + arr_len[0] = new_len + return arr + + + cdef extract_phrases(self, int e_low, int e_high, int* e_gap_low, int* e_gap_high, int* e_links_low, int num_gaps, + int f_low, int f_high, int* f_gap_low, int* f_gap_high, int* f_links_low, + int sent_id, int e_sent_len, int e_sent_start): + cdef int i, j, k, m, n, *e_gap_order, e_x_low, e_x_high, e_x_gap_low, e_x_gap_high + cdef int *e_gaps1, *e_gaps2, len1, len2, step, num_chunks + cdef IntList ephr_arr + cdef result + + result = [] + len1 = 0 + e_gaps1 = <int*> malloc(0) + ephr_arr = IntList() + + e_gap_order = <int*> malloc(num_gaps*sizeof(int)) + if num_gaps > 0: + e_gap_order[0] = 0 + for i from 1 <= i < num_gaps: + for j from 0 <= j < i: + if e_gap_low[i] < e_gap_low[j]: + for k from j <= k < i: + e_gap_order[k+1] = e_gap_order[k] + e_gap_order[j] = i + break + else: + e_gap_order[i] = i + + e_x_low = e_low + e_x_high = e_high + if self.tight_phrases == 0: + while e_x_low > 0 and e_high - e_x_low < self.train_max_initial_size and e_links_low[e_x_low-1] == -1: + e_x_low = e_x_low - 1 + while e_x_high < e_sent_len and e_x_high - e_low < self.train_max_initial_size and e_links_low[e_x_high] == -1: + e_x_high = e_x_high + 1 + + for i from e_x_low <= i <= e_low: + e_gaps1 = self.int_arr_extend(e_gaps1, &len1, &i, 1) + + for i from 0 <= i < num_gaps: + e_gaps2 = <int*> malloc(0) + len2 = 0 + + j = e_gap_order[i] + e_x_gap_low = e_gap_low[j] + e_x_gap_high = e_gap_high[j] + if self.tight_phrases == 0: + while e_x_gap_low > e_x_low and e_links_low[e_x_gap_low-1] == -1: + e_x_gap_low = e_x_gap_low - 1 + while e_x_gap_high < e_x_high and e_links_low[e_x_gap_high] == -1: + e_x_gap_high = e_x_gap_high + 1 + + k = 0 + step = 1+(i*2) + while k < len1: + for m from e_x_gap_low <= m <= e_gap_low[j]: + if m >= e_gaps1[k+step-1]: + for n from e_gap_high[j] <= n <= e_x_gap_high: + if n-m >= 1: # extractor.py doesn't restrict target-side gap length + e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+k, step) + e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &m, 1) + e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &n, 1) + k = k + step + free(e_gaps1) + e_gaps1 = e_gaps2 + len1 = len2 + + step = 1+(num_gaps*2) + e_gaps2 = <int*> malloc(0) + len2 = 0 + for i from e_high <= i <= e_x_high: + j = 0 + while j < len1: + if i - e_gaps1[j] <= self.train_max_initial_size and i >= e_gaps1[j+step-1]: + e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+j, step) + e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &i, 1) + j = j + step + free(e_gaps1) + e_gaps1 = e_gaps2 + len1 = len2 + + step = (num_gaps+1)*2 + i = 0 + + while i < len1: + ephr_arr._clear() + num_chunks = 0 + indexes = [] + for j from 0 <= j < num_gaps+1: + if e_gaps1[i+2*j] < e_gaps1[i+(2*j)+1]: + num_chunks = num_chunks + 1 + for k from e_gaps1[i+2*j] <= k < e_gaps1[i+(2*j)+1]: + indexes.append(k) + ephr_arr._append(self.eid2symid[self.eda.data.arr[e_sent_start+k]]) + if j < num_gaps: + indexes.append(sym_setindex(self.category, e_gap_order[j]+1)) + ephr_arr._append(sym_setindex(self.category, e_gap_order[j]+1)) + i = i + step + if ephr_arr.len <= self.max_target_length and num_chunks <= self.max_target_chunks: + result.append((Phrase(ephr_arr),indexes)) + + free(e_gaps1) + free(e_gap_order) + return result + + cdef create_alignments(self, int* sent_links, int num_links, findexes, eindexes): + cdef unsigned i + ret = IntList() + for i in range(len(findexes)): + s = findexes[i] + if (s<0): + continue + idx = 0 + while (idx < num_links*2): + if (sent_links[idx] == s): + j = eindexes.index(sent_links[idx+1]) + ret.append(i*65536+j) + idx += 2 + return ret + + cdef extract(self, Phrase phrase, Matching* matching, int* chunklen, int num_chunks): + cdef int* sent_links, *e_links_low, *e_links_high, *f_links_low, *f_links_high + cdef int *f_gap_low, *f_gap_high, *e_gap_low, *e_gap_high, num_gaps, gap_start + cdef int i, j, k, e_i, f_i, num_links, num_aligned_chunks, met_constraints, x + cdef int f_low, f_high, e_low, e_high, f_back_low, f_back_high + cdef int e_sent_start, e_sent_end, f_sent_start, f_sent_end, e_sent_len, f_sent_len + cdef int e_word_count, f_x_low, f_x_high, e_x_low, e_x_high, phrase_len + cdef float pair_count + cdef extracts, phrase_list + cdef IntList fphr_arr + cdef Phrase fphr + cdef reason_for_failure + + fphr_arr = IntList() + phrase_len = phrase.n + extracts = [] + sent_links = self.alignment._get_sent_links(matching.sent_id, &num_links) + + e_sent_start = self.eda.sent_index.arr[matching.sent_id] + e_sent_end = self.eda.sent_index.arr[matching.sent_id+1] + e_sent_len = e_sent_end - e_sent_start - 1 + f_sent_start = self.fda.sent_index.arr[matching.sent_id] + f_sent_end = self.fda.sent_index.arr[matching.sent_id+1] + f_sent_len = f_sent_end - f_sent_start - 1 + + self.findexes1.reset() + sofar = 0 + for i in range(num_chunks): + for j in range(chunklen[i]): + self.findexes1.append(matching.arr[matching.start+i]+j-f_sent_start); + sofar += 1 + if (i+1<num_chunks): + self.findexes1.append(phrase[sofar]) + sofar += 1 + + + e_links_low = <int*> malloc(e_sent_len*sizeof(int)) + e_links_high = <int*> malloc(e_sent_len*sizeof(int)) + f_links_low = <int*> malloc(f_sent_len*sizeof(int)) + f_links_high = <int*> malloc(f_sent_len*sizeof(int)) + f_gap_low = <int*> malloc((num_chunks+1)*sizeof(int)) + f_gap_high = <int*> malloc((num_chunks+1)*sizeof(int)) + e_gap_low = <int*> malloc((num_chunks+1)*sizeof(int)) + e_gap_high = <int*> malloc((num_chunks+1)*sizeof(int)) + memset(f_gap_low, 0, (num_chunks+1)*sizeof(int)) + memset(f_gap_high, 0, (num_chunks+1)*sizeof(int)) + memset(e_gap_low, 0, (num_chunks+1)*sizeof(int)) + memset(e_gap_high, 0, (num_chunks+1)*sizeof(int)) + + reason_for_failure = "" + + for i from 0 <= i < e_sent_len: + e_links_low[i] = -1 + e_links_high[i] = -1 + for i from 0 <= i < f_sent_len: + f_links_low[i] = -1 + f_links_high[i] = -1 + + # this is really inefficient -- might be good to + # somehow replace with binary search just for the f + # links that we care about (but then how to look up + # when we want to check something on the e side?) + i = 0 + while i < num_links*2: + f_i = sent_links[i] + e_i = sent_links[i+1] + if f_links_low[f_i] == -1 or f_links_low[f_i] > e_i: + f_links_low[f_i] = e_i + if f_links_high[f_i] == -1 or f_links_high[f_i] < e_i + 1: + f_links_high[f_i] = e_i + 1 + if e_links_low[e_i] == -1 or e_links_low[e_i] > f_i: + e_links_low[e_i] = f_i + if e_links_high[e_i] == -1 or e_links_high[e_i] < f_i + 1: + e_links_high[e_i] = f_i + 1 + i = i + 2 + + als = [] + for x in range(matching.start,matching.end): + al = (matching.arr[x]-f_sent_start,f_links_low[matching.arr[x]-f_sent_start]) + als.append(al) + # check all source-side alignment constraints + met_constraints = 1 + if self.require_aligned_terminal: + num_aligned_chunks = 0 + for i from 0 <= i < num_chunks: + for j from 0 <= j < chunklen[i]: + if f_links_low[matching.arr[matching.start+i]+j-f_sent_start] > -1: + num_aligned_chunks = num_aligned_chunks + 1 + break + if num_aligned_chunks == 0: + reason_for_failure = "No aligned terminals" + met_constraints = 0 + if self.require_aligned_chunks and num_aligned_chunks < num_chunks: + reason_for_failure = "Unaligned chunk" + met_constraints = 0 + + if met_constraints and self.tight_phrases: + # outside edge constraints are checked later + for i from 0 <= i < num_chunks-1: + if f_links_low[matching.arr[matching.start+i]+chunklen[i]-f_sent_start] == -1: + reason_for_failure = "Gaps are not tight phrases" + met_constraints = 0 + break + if f_links_low[matching.arr[matching.start+i+1]-1-f_sent_start] == -1: + reason_for_failure = "Gaps are not tight phrases" + met_constraints = 0 + break + + f_low = matching.arr[matching.start] - f_sent_start + f_high = matching.arr[matching.start + matching.size - 1] + chunklen[num_chunks-1] - f_sent_start + if met_constraints: + + if self.find_fixpoint(f_low, f_high, f_links_low, f_links_high, e_links_low, e_links_high, + -1, -1, &e_low, &e_high, &f_back_low, &f_back_high, f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + self.train_min_gap_size, 0, + self.max_nonterminals - num_chunks + 1, 1, 1, 0, 0): + gap_error = 0 + num_gaps = 0 + + if f_back_low < f_low: + f_gap_low[0] = f_back_low + f_gap_high[0] = f_low + num_gaps = 1 + gap_start = 0 + phrase_len = phrase_len+1 + if phrase_len > self.max_length: + gap_error = 1 + if self.tight_phrases: + if f_links_low[f_back_low] == -1 or f_links_low[f_low-1] == -1: + gap_error = 1 + reason_for_failure = "Inside edges of preceding subphrase are not tight" + else: + gap_start = 1 + if self.tight_phrases and f_links_low[f_low] == -1: + # this is not a hard error. we can't extract this phrase + # but we still might be able to extract a superphrase + met_constraints = 0 + + for i from 0 <= i < matching.size - 1: + f_gap_low[1+i] = matching.arr[matching.start+i] + chunklen[i] - f_sent_start + f_gap_high[1+i] = matching.arr[matching.start+i+1] - f_sent_start + num_gaps = num_gaps + 1 + + if f_high < f_back_high: + f_gap_low[gap_start+num_gaps] = f_high + f_gap_high[gap_start+num_gaps] = f_back_high + num_gaps = num_gaps + 1 + phrase_len = phrase_len+1 + if phrase_len > self.max_length: + gap_error = 1 + if self.tight_phrases: + if f_links_low[f_back_high-1] == -1 or f_links_low[f_high] == -1: + gap_error = 1 + reason_for_failure = "Inside edges of following subphrase are not tight" + else: + if self.tight_phrases and f_links_low[f_high-1] == -1: + met_constraints = 0 + + if gap_error == 0: + e_word_count = e_high - e_low + for i from 0 <= i < num_gaps: # check integrity of subphrases + if self.find_fixpoint(f_gap_low[gap_start+i], f_gap_high[gap_start+i], + f_links_low, f_links_high, e_links_low, e_links_high, + -1, -1, e_gap_low+gap_start+i, e_gap_high+gap_start+i, + f_gap_low+gap_start+i, f_gap_high+gap_start+i, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 0, 0, 0, 0, 0, 0, 0) == 0: + gap_error = 1 + reason_for_failure = "Subphrase [%d, %d] failed integrity check" % (f_gap_low[gap_start+i], f_gap_high[gap_start+i]) + break + + if gap_error == 0: + i = 1 + self.findexes.reset() + if f_back_low < f_low: + fphr_arr._append(sym_setindex(self.category, i)) + i = i+1 + self.findexes.append(sym_setindex(self.category, i)) + self.findexes.extend(self.findexes1) + for j from 0 <= j < phrase.n: + if sym_isvar(phrase.syms[j]): + fphr_arr._append(sym_setindex(self.category, i)) + i = i + 1 + else: + fphr_arr._append(phrase.syms[j]) + if f_back_high > f_high: + fphr_arr._append(sym_setindex(self.category, i)) + self.findexes.append(sym_setindex(self.category, i)) + + fphr = Phrase(fphr_arr) + if met_constraints: + phrase_list = self.extract_phrases(e_low, e_high, e_gap_low + gap_start, e_gap_high + gap_start, e_links_low, num_gaps, + f_back_low, f_back_high, f_gap_low + gap_start, f_gap_high + gap_start, f_links_low, + matching.sent_id, e_sent_len, e_sent_start) + if len(phrase_list) > 0: + pair_count = 1.0 / len(phrase_list) + else: + pair_count = 0 + reason_for_failure = "Didn't extract anything from [%d, %d] -> [%d, %d]" % (f_back_low, f_back_high, e_low, e_high) + for (phrase2,eindexes) in phrase_list: + als1 = self.create_alignments(sent_links,num_links,self.findexes,eindexes) + extracts.append((fphr, phrase2, pair_count, tuple(als1))) + + if (num_gaps < self.max_nonterminals and + phrase_len < self.max_length and + f_back_high - f_back_low + self.train_min_gap_size <= self.train_max_initial_size): + if (f_back_low == f_low and + f_low >= self.train_min_gap_size and + ((not self.tight_phrases) or (f_links_low[f_low-1] != -1 and f_links_low[f_back_high-1] != -1))): + f_x_low = f_low-self.train_min_gap_size + met_constraints = 1 + if self.tight_phrases: + while f_x_low >= 0 and f_links_low[f_x_low] == -1: + f_x_low = f_x_low - 1 + if f_x_low < 0 or f_back_high - f_x_low > self.train_max_initial_size: + met_constraints = 0 + + if (met_constraints and + self.find_fixpoint(f_x_low, f_back_high, + f_links_low, f_links_high, e_links_low, e_links_high, + e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 1, 1, 1, 1, 0, 1, 0) and + ((not self.tight_phrases) or f_links_low[f_x_low] != -1) and + self.find_fixpoint(f_x_low, f_low, # check integrity of new subphrase + f_links_low, f_links_high, e_links_low, e_links_high, + -1, -1, e_gap_low, e_gap_high, f_gap_low, f_gap_high, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 0, 0, 0, 0, 0, 0, 0)): + fphr_arr._clear() + i = 1 + self.findexes.reset() + self.findexes.append(sym_setindex(self.category, i)) + fphr_arr._append(sym_setindex(self.category, i)) + i = i+1 + self.findexes.extend(self.findexes1) + for j from 0 <= j < phrase.n: + if sym_isvar(phrase.syms[j]): + fphr_arr._append(sym_setindex(self.category, i)) + i = i + 1 + else: + fphr_arr._append(phrase.syms[j]) + if f_back_high > f_high: + fphr_arr._append(sym_setindex(self.category, i)) + self.findexes.append(sym_setindex(self.category, i)) + fphr = Phrase(fphr_arr) + phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+1, + f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low, matching.sent_id, + e_sent_len, e_sent_start) + if len(phrase_list) > 0: + pair_count = 1.0 / len(phrase_list) + else: + pair_count = 0 + for phrase2,eindexes in phrase_list: + als2 = self.create_alignments(sent_links,num_links,self.findexes,eindexes) + extracts.append((fphr, phrase2, pair_count, tuple(als2))) + + if (f_back_high == f_high and + f_sent_len - f_high >= self.train_min_gap_size and + ((not self.tight_phrases) or (f_links_low[f_high] != -1 and f_links_low[f_back_low] != -1))): + f_x_high = f_high+self.train_min_gap_size + met_constraints = 1 + if self.tight_phrases: + while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1: + f_x_high = f_x_high + 1 + if f_x_high > f_sent_len or f_x_high - f_back_low > self.train_max_initial_size: + met_constraints = 0 + + if (met_constraints and + self.find_fixpoint(f_back_low, f_x_high, + f_links_low, f_links_high, e_links_low, e_links_high, + e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 1, 1, 1, 0, 1, 1, 0) and + ((not self.tight_phrases) or f_links_low[f_x_high-1] != -1) and + self.find_fixpoint(f_high, f_x_high, + f_links_low, f_links_high, e_links_low, e_links_high, + -1, -1, e_gap_low+gap_start+num_gaps, e_gap_high+gap_start+num_gaps, + f_gap_low+gap_start+num_gaps, f_gap_high+gap_start+num_gaps, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 0, 0, 0, 0, 0, 0, 0)): + fphr_arr._clear() + i = 1 + self.findexes.reset() + if f_back_low < f_low: + fphr_arr._append(sym_setindex(self.category, i)) + i = i+1 + self.findexes.append(sym_setindex(self.category, i)) + self.findexes.extend(self.findexes1) + for j from 0 <= j < phrase.n: + if sym_isvar(phrase.syms[j]): + fphr_arr._append(sym_setindex(self.category, i)) + i = i + 1 + else: + fphr_arr._append(phrase.syms[j]) + fphr_arr._append(sym_setindex(self.category, i)) + self.findexes.append(sym_setindex(self.category, i)) + fphr = Phrase(fphr_arr) + phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low+gap_start, e_gap_high+gap_start, e_links_low, num_gaps+1, + f_x_low, f_x_high, f_gap_low+gap_start, f_gap_high+gap_start, f_links_low, + matching.sent_id, e_sent_len, e_sent_start) + if len(phrase_list) > 0: + pair_count = 1.0 / len(phrase_list) + else: + pair_count = 0 + for phrase2, eindexes in phrase_list: + als3 = self.create_alignments(sent_links,num_links,self.findexes,eindexes) + extracts.append((fphr, phrase2, pair_count, tuple(als3))) + if (num_gaps < self.max_nonterminals - 1 and + phrase_len+1 < self.max_length and + f_back_high == f_high and + f_back_low == f_low and + f_back_high - f_back_low + (2*self.train_min_gap_size) <= self.train_max_initial_size and + f_low >= self.train_min_gap_size and + f_high <= f_sent_len - self.train_min_gap_size and + ((not self.tight_phrases) or (f_links_low[f_low-1] != -1 and f_links_low[f_high] != -1))): + + met_constraints = 1 + f_x_low = f_low-self.train_min_gap_size + if self.tight_phrases: + while f_x_low >= 0 and f_links_low[f_x_low] == -1: + f_x_low = f_x_low - 1 + if f_x_low < 0: + met_constraints = 0 + + f_x_high = f_high+self.train_min_gap_size + if self.tight_phrases: + while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1: + f_x_high = f_x_high + 1 + if f_x_high > f_sent_len or f_x_high - f_x_low > self.train_max_initial_size: + met_constraints = 0 + + if (met_constraints and + self.find_fixpoint(f_x_low, f_x_high, + f_links_low, f_links_high, e_links_low, e_links_high, + e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 1, 1, 2, 1, 1, 1, 1) and + ((not self.tight_phrases) or (f_links_low[f_x_low] != -1 and f_links_low[f_x_high-1] != -1)) and + self.find_fixpoint(f_x_low, f_low, + f_links_low, f_links_high, e_links_low, e_links_high, + -1, -1, e_gap_low, e_gap_high, f_gap_low, f_gap_high, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 0, 0, 0, 0, 0, 0, 0) and + self.find_fixpoint(f_high, f_x_high, + f_links_low, f_links_high, e_links_low, e_links_high, + -1, -1, e_gap_low+1+num_gaps, e_gap_high+1+num_gaps, + f_gap_low+1+num_gaps, f_gap_high+1+num_gaps, + f_sent_len, e_sent_len, + self.train_max_initial_size, self.train_max_initial_size, + 0, 0, 0, 0, 0, 0, 0)): + fphr_arr._clear() + i = 1 + self.findexes.reset() + self.findexes.append(sym_setindex(self.category, i)) + fphr_arr._append(sym_setindex(self.category, i)) + i = i+1 + self.findexes.extend(self.findexes1) + for j from 0 <= j < phrase.n: + if sym_isvar(phrase.syms[j]): + fphr_arr._append(sym_setindex(self.category, i)) + i = i + 1 + else: + fphr_arr._append(phrase.syms[j]) + fphr_arr._append(sym_setindex(self.category, i)) + self.findexes.append(sym_setindex(self.category, i)) + fphr = Phrase(fphr_arr) + phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+2, + f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low, + matching.sent_id, e_sent_len, e_sent_start) + if len(phrase_list) > 0: + pair_count = 1.0 / len(phrase_list) + else: + pair_count = 0 + for phrase2, eindexes in phrase_list: + als4 = self.create_alignments(sent_links,num_links,self.findexes,eindexes) + extracts.append((fphr, phrase2, pair_count, tuple(als4))) + else: + reason_for_failure = "Unable to extract basic phrase" + + free(sent_links) + free(f_links_low) + free(f_links_high) + free(e_links_low) + free(e_links_high) + free(f_gap_low) + free(f_gap_high) + free(e_gap_low) + free(e_gap_high) + + return extracts |