diff options
| -rw-r--r-- | Makefile.am | 2 | ||||
| -rw-r--r-- | configure.ac | 2 | ||||
| -rw-r--r-- | pro-train/Makefile.am | 13 | ||||
| -rw-r--r-- | pro-train/README.shared-mem | 9 | ||||
| -rwxr-xr-x | pro-train/dist-pro.pl | 735 | ||||
| -rw-r--r-- | pro-train/mr_pro_map.cc | 111 | ||||
| -rw-r--r-- | pro-train/mr_pro_reduce.cc | 81 |
7 files changed, 951 insertions, 2 deletions
diff --git a/Makefile.am b/Makefile.am index f5397d0b..98b4bac7 100644 --- a/Makefile.am +++ b/Makefile.am @@ -1,7 +1,7 @@ # warning - the subdirectories in the following list should # be kept in topologically sorted order. Also, DO NOT introduce # cyclic dependencies between these directories! -SUBDIRS = utils mteval klm/util klm/lm decoder phrasinator training mira vest extools +SUBDIRS = utils mteval klm/util klm/lm decoder phrasinator training mira vest pro-train extools #gi/pyp-topics/src gi/clda/src gi/posterior-regularisation/prjava diff --git a/configure.ac b/configure.ac index db2b4afc..4e708073 100644 --- a/configure.ac +++ b/configure.ac @@ -92,4 +92,4 @@ then AM_CONDITIONAL([GLC], true) fi -AC_OUTPUT(Makefile utils/Makefile mteval/Makefile extools/Makefile decoder/Makefile phrasinator/Makefile training/Makefile vest/Makefile klm/util/Makefile klm/lm/Makefile mira/Makefile gi/pyp-topics/src/Makefile gi/clda/src/Makefile) +AC_OUTPUT(Makefile utils/Makefile mteval/Makefile extools/Makefile decoder/Makefile phrasinator/Makefile training/Makefile vest/Makefile pro-train/Makefile klm/util/Makefile klm/lm/Makefile mira/Makefile gi/pyp-topics/src/Makefile gi/clda/src/Makefile) diff --git a/pro-train/Makefile.am b/pro-train/Makefile.am new file mode 100644 index 00000000..945ed5c3 --- /dev/null +++ b/pro-train/Makefile.am @@ -0,0 +1,13 @@ +bin_PROGRAMS = \ + mr_pro_map \ + mr_pro_reduce + +TESTS = lo_test + +mr_pro_map_SOURCES = mr_pro_map.cc +mr_pro_map_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a -lz + +mr_pro_reduce_SOURCES = mr_pro_reduce.cc +mr_pro_reduce_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a -lz + +AM_CPPFLAGS = -W -Wall -Wno-sign-compare $(GTEST_CPPFLAGS) -I$(top_srcdir)/utils -I$(top_srcdir)/decoder -I$(top_srcdir)/mteval diff --git a/pro-train/README.shared-mem b/pro-train/README.shared-mem new file mode 100644 index 00000000..7728efc0 --- /dev/null +++ b/pro-train/README.shared-mem @@ -0,0 +1,9 @@ +If you want to run dist-vest.pl on a very large shared memory machine, do the +following: + + ./dist-vest.pl --use-make I --decode-nodes J --weights weights.init --source-file=dev.src --ref-files=dev.ref.* cdec.ini + +This will use I jobs for doing the line search and J jobs to run the decoder. Typically, since the +decoder must load grammars, language models, etc., J should be smaller than I, but this will depend +on the system you are running on and the complexity of the models used for decoding. + diff --git a/pro-train/dist-pro.pl b/pro-train/dist-pro.pl new file mode 100755 index 00000000..35bccea4 --- /dev/null +++ b/pro-train/dist-pro.pl @@ -0,0 +1,735 @@ +#!/usr/bin/env perl +use strict; +my @ORIG_ARGV=@ARGV; +use Cwd qw(getcwd); +my $SCRIPT_DIR; BEGIN { use Cwd qw/ abs_path /; use File::Basename; $SCRIPT_DIR = dirname(abs_path($0)); push @INC, $SCRIPT_DIR, "$SCRIPT_DIR/../environment"; } + +# Skip local config (used for distributing jobs) if we're running in local-only mode +use LocalConfig; +use Getopt::Long; +use IPC::Open2; +use POSIX ":sys_wait_h"; +my $QSUB_CMD = qsub_args(mert_memory()); + +my $VEST_DIR="$SCRIPT_DIR/../vest"; +require "$VEST_DIR/libcall.pl"; + +# Default settings +my $srcFile; +my $refFiles; +my $bin_dir = $SCRIPT_DIR; +die "Bin directory $bin_dir missing/inaccessible" unless -d $bin_dir; +my $FAST_SCORE="$bin_dir/../mteval/fast_score"; +die "Can't execute $FAST_SCORE" unless -x $FAST_SCORE; +my $MAPINPUT = "$bin_dir/mr_pro_generate_mapper_input"; +my $MAPPER = "$bin_dir/mr_pro_map"; +my $REDUCER = "$bin_dir/mr_pro_reduce"; +my $parallelize = "$VEST_DIR/parallelize.pl"; +my $libcall = "$VEST_DIR/libcall.pl"; +my $sentserver = "$VEST_DIR/sentserver"; +my $sentclient = "$VEST_DIR/sentclient"; +my $LocalConfig = "$SCRIPT_DIR/../environment/LocalConfig.pm"; + +my $SCORER = $FAST_SCORE; +die "Can't find $MAPPER" unless -x $MAPPER; +my $cdec = "$bin_dir/../decoder/cdec"; +die "Can't find decoder in $cdec" unless -x $cdec; +die "Can't find $parallelize" unless -x $parallelize; +die "Can't find $libcall" unless -e $libcall; +my $decoder = $cdec; +my $lines_per_mapper = 400; +my $rand_directions = 15; +my $iteration = 1; +my $run_local = 0; +my $best_weights; +my $max_iterations = 15; +my $optimization_iters = 6; +my $decode_nodes = 15; # number of decode nodes +my $pmem = "9g"; +my $disable_clean = 0; +my %seen_weights; +my $normalize; +my $help = 0; +my $epsilon = 0.0001; +my $interval = 5; +my $dryrun = 0; +my $last_score = -10000000; +my $metric = "ibm_bleu"; +my $dir; +my $iniFile; +my $weights; +my $initialWeights; +my $decoderOpt; +my $noprimary; +my $maxsim=0; +my $oraclen=0; +my $oracleb=20; +my $bleu_weight=1; +my $use_make; # use make to parallelize line search +my $dirargs=''; +my $density_prune; +my $usefork; +my $pass_suffix = ''; +my $cpbin=1; +# Process command-line options +Getopt::Long::Configure("no_auto_abbrev"); +if (GetOptions( + "decoder=s" => \$decoderOpt, + "decode-nodes=i" => \$decode_nodes, + "density-prune=f" => \$density_prune, + "dont-clean" => \$disable_clean, + "pass-suffix=s" => \$pass_suffix, + "use-fork" => \$usefork, + "dry-run" => \$dryrun, + "epsilon=s" => \$epsilon, + "help" => \$help, + "interval" => \$interval, + "iteration=i" => \$iteration, + "local" => \$run_local, + "use-make=i" => \$use_make, + "max-iterations=i" => \$max_iterations, + "normalize=s" => \$normalize, + "pmem=s" => \$pmem, + "cpbin!" => \$cpbin, + "rand-directions=i" => \$rand_directions, + "random_directions=i" => \$rand_directions, + "bleu_weight=s" => \$bleu_weight, + "no-primary!" => \$noprimary, + "max-similarity=s" => \$maxsim, + "oracle-directions=i" => \$oraclen, + "n-oracle=i" => \$oraclen, + "oracle-batch=i" => \$oracleb, + "directions-args=s" => \$dirargs, + "ref-files=s" => \$refFiles, + "metric=s" => \$metric, + "source-file=s" => \$srcFile, + "weights=s" => \$initialWeights, + "workdir=s" => \$dir, + "opt-iterations=i" => \$optimization_iters, +) == 0 || @ARGV!=1 || $help) { + print_help(); + exit; +} + +if (defined $density_prune) { + die "--density_prune n: n must be greater than 1.0\n" unless $density_prune > 1.0; +} + +if ($usefork) { $usefork = "--use-fork"; } else { $usefork = ''; } + +if ($metric =~ /^(combi|ter)$/i) { + $lines_per_mapper = 40; +} elsif ($metric =~ /^meteor$/i) { + $lines_per_mapper = 2000; # start up time is really high +} + +($iniFile) = @ARGV; + + +sub write_config; +sub enseg; +sub print_help; + +my $nodelist; +my $host =check_output("hostname"); chomp $host; +my $bleu; +my $interval_count = 0; +my $logfile; +my $projected_score; + +# used in sorting scores +my $DIR_FLAG = '-r'; +if ($metric =~ /^ter$|^aer$/i) { + $DIR_FLAG = ''; +} + +my $refs_comma_sep = get_comma_sep_refs('r',$refFiles); + +unless ($dir){ + $dir = "vest"; +} +unless ($dir =~ /^\//){ # convert relative path to absolute path + my $basedir = check_output("pwd"); + chomp $basedir; + $dir = "$basedir/$dir"; +} + +if ($decoderOpt){ $decoder = $decoderOpt; } + + +# Initializations and helper functions +srand; + +my @childpids = (); +my @cleanupcmds = (); + +sub cleanup { + print STDERR "Cleanup...\n"; + for my $pid (@childpids){ unchecked_call("kill $pid"); } + for my $cmd (@cleanupcmds){ unchecked_call("$cmd"); } + exit 1; +}; +# Always call cleanup, no matter how we exit +*CORE::GLOBAL::exit = + sub{ cleanup(); }; +$SIG{INT} = "cleanup"; +$SIG{TERM} = "cleanup"; +$SIG{HUP} = "cleanup"; + +my $decoderBase = check_output("basename $decoder"); chomp $decoderBase; +my $newIniFile = "$dir/$decoderBase.ini"; +my $inputFileName = "$dir/input"; +my $user = $ENV{"USER"}; + + +# process ini file +-e $iniFile || die "Error: could not open $iniFile for reading\n"; +open(INI, $iniFile); + +use File::Basename qw(basename); +#pass bindir, refs to vars holding bin +sub modbin { + local $_; + my $bindir=shift; + check_call("mkdir -p $bindir"); + -d $bindir || die "couldn't make bindir $bindir"; + for (@_) { + my $src=$$_; + $$_="$bindir/".basename($src); + check_call("cp -p $src $$_"); + } +} +sub dirsize { + opendir ISEMPTY,$_[0]; + return scalar(readdir(ISEMPTY))-1; +} +if ($dryrun){ + write_config(*STDERR); + exit 0; +} else { + if (-e $dir && dirsize($dir)>1 && -e "$dir/hgs" ){ # allow preexisting logfile, binaries, but not dist-vest.pl outputs + die "ERROR: working dir $dir already exists\n\n"; + } else { + -e $dir || mkdir $dir; + mkdir "$dir/hgs"; + modbin("$dir/bin",\$LocalConfig,\$cdec,\$SCORER,\$MAPINPUT,\$MAPPER,\$REDUCER,\$parallelize,\$sentserver,\$sentclient,\$libcall) if $cpbin; + mkdir "$dir/scripts"; + my $cmdfile="$dir/rerun-vest.sh"; + open CMD,'>',$cmdfile; + print CMD "cd ",&getcwd,"\n"; +# print CMD &escaped_cmdline,"\n"; #buggy - last arg is quoted. + my $cline=&cmdline."\n"; + print CMD $cline; + close CMD; + print STDERR $cline; + chmod(0755,$cmdfile); + unless (-e $initialWeights) { + print STDERR "Please specify an initial weights file with --initial-weights\n"; + print_help(); + exit; + } + check_call("cp $initialWeights $dir/weights.0"); + die "Can't find weights.0" unless (-e "$dir/weights.0"); + } + write_config(*STDERR); +} + + +# Generate initial files and values +check_call("cp $iniFile $newIniFile"); +$iniFile = $newIniFile; + +my $newsrc = "$dir/dev.input"; +enseg($srcFile, $newsrc); +$srcFile = $newsrc; +my $devSize = 0; +open F, "<$srcFile" or die "Can't read $srcFile: $!"; +while(<F>) { $devSize++; } +close F; + +unless($best_weights){ $best_weights = $weights; } +unless($projected_score){ $projected_score = 0.0; } +$seen_weights{$weights} = 1; + +my $random_seed = int(time / 1000); +my $lastWeightsFile; +my $lastPScore = 0; +# main optimization loop +while (1){ + print STDERR "\n\nITERATION $iteration\n==========\n"; + + if ($iteration > $max_iterations){ + print STDERR "\nREACHED STOPPING CRITERION: Maximum iterations\n"; + last; + } + # iteration-specific files + my $runFile="$dir/run.raw.$iteration"; + my $onebestFile="$dir/1best.$iteration"; + my $logdir="$dir/logs.$iteration"; + my $decoderLog="$logdir/decoder.sentserver.log.$iteration"; + my $scorerLog="$logdir/scorer.log.$iteration"; + check_call("mkdir -p $logdir"); + + + #decode + print STDERR "RUNNING DECODER AT "; + print STDERR unchecked_output("date"); + my $im1 = $iteration - 1; + my $weightsFile="$dir/weights.$im1"; + my $decoder_cmd = "$decoder -c $iniFile --weights$pass_suffix $weightsFile -O $dir/hgs"; + if ($density_prune) { + $decoder_cmd .= " --density_prune $density_prune"; + } + my $pcmd; + if ($run_local) { + $pcmd = "cat $srcFile |"; + } elsif ($use_make) { + # TODO: Throw error when decode_nodes is specified along with use_make + $pcmd = "cat $srcFile | $parallelize --use-fork -p $pmem -e $logdir -j $use_make --"; + } else { + $pcmd = "cat $srcFile | $parallelize $usefork -p $pmem -e $logdir -j $decode_nodes --"; + } + my $cmd = "$pcmd $decoder_cmd 2> $decoderLog 1> $runFile"; + print STDERR "COMMAND:\n$cmd\n"; + check_bash_call($cmd); + my $num_hgs; + my $num_topbest; + my $retries = 0; + while($retries < 5) { + $num_hgs = check_output("ls $dir/hgs/*.gz | wc -l"); + $num_topbest = check_output("wc -l < $runFile"); + print STDERR "NUMBER OF HGs: $num_hgs\n"; + print STDERR "NUMBER OF TOP-BEST HYPs: $num_topbest\n"; + if($devSize == $num_hgs && $devSize == $num_topbest) { + last; + } else { + print STDERR "Incorrect number of hypergraphs or topbest. Waiting for distributed filesystem and retrying...\n"; + sleep(3); + } + $retries++; + } + die "Dev set contains $devSize sentences, but we don't have topbest and hypergraphs for all these! Decoder failure? Check $decoderLog\n" if ($devSize != $num_hgs || $devSize != $num_topbest); + my $dec_score = check_output("cat $runFile | $SCORER $refs_comma_sep -l $metric"); + chomp $dec_score; + print STDERR "DECODER SCORE: $dec_score\n"; + + # save space + check_call("gzip -f $runFile"); + check_call("gzip -f $decoderLog"); + + # run optimizer + print STDERR "RUNNING OPTIMIZER AT "; + print STDERR unchecked_output("date"); + my $mergeLog="$logdir/prune-merge.log.$iteration"; + + my $score = 0; + my $icc = 0; + my $inweights="$dir/weights.$im1"; + for (my $opt_iter=1; $opt_iter<$optimization_iters; $opt_iter++) { + print STDERR "\nGENERATE OPTIMIZATION STRATEGY (OPT-ITERATION $opt_iter/$optimization_iters)\n"; + print STDERR unchecked_output("date"); + $icc++; + my $nop=$noprimary?"--no_primary":""; + my $targs=$oraclen ? "--decoder_translations='$runFile.gz' ".get_comma_sep_refs('-references',$refFiles):""; + my $bwargs=$bleu_weight!=1 ? "--bleu_weight=$bleu_weight":""; + $cmd="$MAPINPUT -w $inweights -r $dir/hgs $bwargs -s $devSize -d $rand_directions --max_similarity=$maxsim --oracle_directions=$oraclen --oracle_batch=$oracleb $targs $dirargs > $dir/agenda.$im1-$opt_iter"; + print STDERR "COMMAND:\n$cmd\n"; + check_call($cmd); + check_call("mkdir -p $dir/splag.$im1"); + $cmd="split -a 3 -l $lines_per_mapper $dir/agenda.$im1-$opt_iter $dir/splag.$im1/mapinput."; + print STDERR "COMMAND:\n$cmd\n"; + check_call($cmd); + opendir(DIR, "$dir/splag.$im1") or die "Can't open directory: $!"; + my @shards = grep { /^mapinput\./ } readdir(DIR); + closedir DIR; + die "No shards!" unless scalar @shards > 0; + my $joblist = ""; + my $nmappers = 0; + my @mapoutputs = (); + @cleanupcmds = (); + my %o2i = (); + my $first_shard = 1; + my $mkfile; # only used with makefiles + my $mkfilename; + if ($use_make) { + $mkfilename = "$dir/splag.$im1/domap.mk"; + open $mkfile, ">$mkfilename" or die "Couldn't write $mkfilename: $!"; + print $mkfile "all: $dir/splag.$im1/map.done\n\n"; + } + my @mkouts = (); # only used with makefiles + for my $shard (@shards) { + my $mapoutput = $shard; + my $client_name = $shard; + $client_name =~ s/mapinput.//; + $client_name = "vest.$client_name"; + $mapoutput =~ s/mapinput/mapoutput/; + push @mapoutputs, "$dir/splag.$im1/$mapoutput"; + $o2i{"$dir/splag.$im1/$mapoutput"} = "$dir/splag.$im1/$shard"; + my $script = "$MAPPER -s $srcFile -l $metric $refs_comma_sep < $dir/splag.$im1/$shard | sort -t \$'\\t' -k 1 > $dir/splag.$im1/$mapoutput"; + if ($run_local) { + print STDERR "COMMAND:\n$script\n"; + check_bash_call($script); + } elsif ($use_make) { + my $script_file = "$dir/scripts/map.$shard"; + open F, ">$script_file" or die "Can't write $script_file: $!"; + print F "#!/bin/bash\n"; + print F "$script\n"; + close F; + my $output = "$dir/splag.$im1/$mapoutput"; + push @mkouts, $output; + chmod(0755, $script_file) or die "Can't chmod $script_file: $!"; + if ($first_shard) { print STDERR "$script\n"; $first_shard=0; } + print $mkfile "$output: $dir/splag.$im1/$shard\n\t$script_file\n\n"; + } else { + my $script_file = "$dir/scripts/map.$shard"; + open F, ">$script_file" or die "Can't write $script_file: $!"; + print F "$script\n"; + close F; + if ($first_shard) { print STDERR "$script\n"; $first_shard=0; } + + $nmappers++; + my $qcmd = "$QSUB_CMD -N $client_name -o /dev/null -e $logdir/$client_name.ER $script_file"; + my $jobid = check_output("$qcmd"); + chomp $jobid; + $jobid =~ s/^(\d+)(.*?)$/\1/g; + $jobid =~ s/^Your job (\d+) .*$/\1/; + push(@cleanupcmds, "qdel $jobid 2> /dev/null"); + print STDERR " $jobid"; + if ($joblist == "") { $joblist = $jobid; } + else {$joblist = $joblist . "\|" . $jobid; } + } + } + if ($run_local) { + print STDERR "\nProcessing line search complete.\n"; + } elsif ($use_make) { + print $mkfile "$dir/splag.$im1/map.done: @mkouts\n\ttouch $dir/splag.$im1/map.done\n\n"; + close $mkfile; + my $mcmd = "make -j $use_make -f $mkfilename"; + print STDERR "\nExecuting: $mcmd\n"; + check_call($mcmd); + } else { + print STDERR "\nLaunched $nmappers mappers.\n"; + sleep 8; + print STDERR "Waiting for mappers to complete...\n"; + while ($nmappers > 0) { + sleep 5; + my @livejobs = grep(/$joblist/, split(/\n/, unchecked_output("qstat | grep -v ' C '"))); + $nmappers = scalar @livejobs; + } + print STDERR "All mappers complete.\n"; + } + my $tol = 0; + my $til = 0; + for my $mo (@mapoutputs) { + my $olines = get_lines($mo); + my $ilines = get_lines($o2i{$mo}); + $tol += $olines; + $til += $ilines; + die "$mo: output lines ($olines) doesn't match input lines ($ilines)" unless $olines==$ilines; + } + print STDERR "Results for $tol/$til lines\n"; + print STDERR "\nSORTING AND RUNNING VEST REDUCER\n"; + print STDERR unchecked_output("date"); + $cmd="sort -t \$'\\t' -k 1 @mapoutputs | $REDUCER -l $metric > $dir/redoutput.$im1"; + print STDERR "COMMAND:\n$cmd\n"; + check_bash_call($cmd); + $cmd="sort -nk3 $DIR_FLAG '-t|' $dir/redoutput.$im1 | head -1"; + # sort returns failure even when it doesn't fail for some reason + my $best=unchecked_output("$cmd"); chomp $best; + print STDERR "$best\n"; + my ($oa, $x, $xscore) = split /\|/, $best; + $score = $xscore; + print STDERR "PROJECTED SCORE: $score\n"; + if (abs($x) < $epsilon) { + print STDERR "\nOPTIMIZER: no score improvement: abs($x) < $epsilon\n"; + last; + } + my $psd = $score - $last_score; + $last_score = $score; + if (abs($psd) < $epsilon) { + print STDERR "\nOPTIMIZER: no score improvement: abs($psd) < $epsilon\n"; + last; + } + my ($origin, $axis) = split /\s+/, $oa; + + my %ori = convert($origin); + my %axi = convert($axis); + + my $finalFile="$dir/weights.$im1-$opt_iter"; + open W, ">$finalFile" or die "Can't write: $finalFile: $!"; + my $norm = 0; + for my $k (sort keys %ori) { + my $dd = $ori{$k} + $axi{$k} * $x; + $norm += $dd * $dd; + } + $norm = sqrt($norm); + $norm = 1; + for my $k (sort keys %ori) { + my $v = ($ori{$k} + $axi{$k} * $x) / $norm; + print W "$k $v\n"; + } + check_call("rm $dir/splag.$im1/*"); + $inweights = $finalFile; + } + $lastWeightsFile = "$dir/weights.$iteration"; + check_call("cp $inweights $lastWeightsFile"); + if ($icc < 2) { + print STDERR "\nREACHED STOPPING CRITERION: score change too little\n"; + last; + } + $lastPScore = $score; + $iteration++; + print STDERR "\n==========\n"; +} + +print STDERR "\nFINAL WEIGHTS: $lastWeightsFile\n(Use -w <this file> with the decoder)\n\n"; + +print STDOUT "$lastWeightsFile\n"; + +exit 0; + +sub normalize_weights { + my ($rfn, $rpts, $feat) = @_; + my @feat_names = @$rfn; + my @pts = @$rpts; + my $z = 1.0; + for (my $i=0; $i < scalar @feat_names; $i++) { + if ($feat_names[$i] eq $feat) { + $z = $pts[$i]; + last; + } + } + for (my $i=0; $i < scalar @feat_names; $i++) { + $pts[$i] /= $z; + } + print STDERR " NORM WEIGHTS: @pts\n"; + return @pts; +} + +sub get_lines { + my $fn = shift @_; + open FL, "<$fn" or die "Couldn't read $fn: $!"; + my $lc = 0; + while(<FL>) { $lc++; } + return $lc; +} + +sub get_comma_sep_refs { + my ($r,$p) = @_; + my $o = check_output("echo $p"); + chomp $o; + my @files = split /\s+/, $o; + return "-$r " . join(" -$r ", @files); +} + +sub read_weights_file { + my ($file) = @_; + open F, "<$file" or die "Couldn't read $file: $!"; + my @r = (); + my $pm = -1; + while(<F>) { + next if /^#/; + next if /^\s*$/; + chomp; + if (/^(.+)\s+(.+)$/) { + my $m = $1; + my $w = $2; + die "Weights out of order: $m <= $pm" unless $m > $pm; + push @r, $w; + } else { + warn "Unexpected feature name in weight file: $_"; + } + } + close F; + return join ' ', @r; +} + +# subs +sub write_config { + my $fh = shift; + my $cleanup = "yes"; + if ($disable_clean) {$cleanup = "no";} + + print $fh "\n"; + print $fh "DECODER: $decoder\n"; + print $fh "INI FILE: $iniFile\n"; + print $fh "WORKING DIR: $dir\n"; + print $fh "SOURCE (DEV): $srcFile\n"; + print $fh "REFS (DEV): $refFiles\n"; + print $fh "EVAL METRIC: $metric\n"; + print $fh "START ITERATION: $iteration\n"; + print $fh "MAX ITERATIONS: $max_iterations\n"; + print $fh "DECODE NODES: $decode_nodes\n"; + print $fh "HEAD NODE: $host\n"; + print $fh "PMEM (DECODING): $pmem\n"; + print $fh "CLEANUP: $cleanup\n"; + print $fh "INITIAL WEIGHTS: $initialWeights\n"; +} + +sub update_weights_file { + my ($neww, $rfn, $rpts) = @_; + my @feats = @$rfn; + my @pts = @$rpts; + my $num_feats = scalar @feats; + my $num_pts = scalar @pts; + die "$num_feats (num_feats) != $num_pts (num_pts)" unless $num_feats == $num_pts; + open G, ">$neww" or die; + for (my $i = 0; $i < $num_feats; $i++) { + my $f = $feats[$i]; + my $lambda = $pts[$i]; + print G "$f $lambda\n"; + } + close G; +} + +sub enseg { + my $src = shift; + my $newsrc = shift; + open(SRC, $src); + open(NEWSRC, ">$newsrc"); + my $i=0; + while (my $line=<SRC>){ + chomp $line; + if ($line =~ /^\s*<seg/i) { + if($line =~ /id="[0-9]+"/) { + print NEWSRC "$line\n"; + } else { + die "When using segments with pre-generated <seg> tags, you must include a zero-based id attribute"; + } + } else { + print NEWSRC "<seg id=\"$i\">$line</seg>\n"; + } + $i++; + } + close SRC; + close NEWSRC; +} + +sub print_help { + + my $executable = check_output("basename $0"); chomp $executable; + print << "Help"; + +Usage: $executable [options] <ini file> + + $executable [options] <ini file> + Runs a complete MERT optimization and test set decoding, using + the decoder configuration in ini file. Note that many of the + options have default values that are inferred automatically + based on certain conventions. For details, refer to descriptions + of the options --decoder, --weights, and --workdir. + +Options: + + --local + Run the decoder and optimizer locally with a single thread. + + --use-make <I> + Use make -j <I> to run the optimizer commands (useful on large + shared-memory machines where qsub is unavailable). + + --decode-nodes <I> + Number of decoder processes to run in parallel. [default=15] + + --decoder <decoder path> + Decoder binary to use. + + --density-prune <N> + Limit the density of the hypergraph on each iteration to N times + the number of edges on the Viterbi path. + + --help + Print this message and exit. + + --iteration <I> + Starting iteration number. If not specified, defaults to 1. + + --max-iterations <M> + Maximum number of iterations to run. If not specified, defaults + to 10. + + --pass-suffix <S> + If the decoder is doing multi-pass decoding, the pass suffix "2", + "3", etc., is used to control what iteration of weights is set. + + --pmem <N> + Amount of physical memory requested for parallel decoding jobs. + + --ref-files <files> + Dev set ref files. This option takes only a single string argument. + To use multiple files (including file globbing), this argument should + be quoted. + + --metric <method> + Metric to optimize. + Example values: IBM_BLEU, NIST_BLEU, Koehn_BLEU, TER, Combi + + --normalize <feature-name> + After each iteration, rescale all feature weights such that feature- + name has a weight of 1.0. + + --rand-directions <num> + MERT will attempt to optimize along all of the principle directions, + set this parameter to explore other directions. Defaults to 5. + + --source-file <file> + Dev set source file. + + --weights <file> + A file specifying initial feature weights. The format is + FeatureName_1 value1 + FeatureName_2 value2 + + --workdir <dir> + Directory for intermediate and output files. If not specified, the + name is derived from the ini filename. Assuming that the ini + filename begins with the decoder name and ends with ini, the default + name of the working directory is inferred from the middle part of + the filename. E.g. an ini file named decoder.foo.ini would have + a default working directory name foo. + +Help +} + +sub convert { + my ($str) = @_; + my @ps = split /;/, $str; + my %dict = (); + for my $p (@ps) { + my ($k, $v) = split /=/, $p; + $dict{$k} = $v; + } + return %dict; +} + + + +sub cmdline { + return join ' ',($0,@ORIG_ARGV); +} + +#buggy: last arg gets quoted sometimes? +my $is_shell_special=qr{[ \t\n\\><|&;"'`~*?{}$!()]}; +my $shell_escape_in_quote=qr{[\\"\$`!]}; + +sub escape_shell { + my ($arg)=@_; + return undef unless defined $arg; + if ($arg =~ /$is_shell_special/) { + $arg =~ s/($shell_escape_in_quote)/\\$1/g; + return "\"$arg\""; + } + return $arg; +} + +sub escaped_shell_args { + return map {local $_=$_;chomp;escape_shell($_)} @_; +} + +sub escaped_shell_args_str { + return join ' ',&escaped_shell_args(@_); +} + +sub escaped_cmdline { + return "$0 ".&escaped_shell_args_str(@ORIG_ARGV); +} diff --git a/pro-train/mr_pro_map.cc b/pro-train/mr_pro_map.cc new file mode 100644 index 00000000..b046cdea --- /dev/null +++ b/pro-train/mr_pro_map.cc @@ -0,0 +1,111 @@ +#include <sstream> +#include <iostream> +#include <fstream> +#include <vector> + +#include <boost/shared_ptr.hpp> +#include <boost/program_options.hpp> +#include <boost/program_options/variables_map.hpp> + +#include "sampler.h" +#include "filelib.h" +#include "stringlib.h" +#include "scorer.h" +#include "inside_outside.h" +#include "hg_io.h" +#include "kbest.h" +#include "viterbi.h" + +// This is Figure 4 (Algorithm Sampler) from Hopkins&May (2011) + +using namespace std; +namespace po = boost::program_options; + +boost::shared_ptr<MT19937> rng; + +void InitCommandLine(int argc, char** argv, po::variables_map* conf) { + po::options_description opts("Configuration options"); + opts.add_options() + ("reference,r",po::value<vector<string> >(), "[REQD] Reference translation (tokenized text)") + ("source,s",po::value<string>(), "Source file (ignored, except for AER)") + ("loss_function,l",po::value<string>()->default_value("ibm_bleu"), "Loss function being optimized") + ("input,i",po::value<string>()->default_value("-"), "Input file to map (- is STDIN)") + ("weights,w",po::value<string>(), "[REQD] Current weights file") + ("kbest_size,k",po::value<unsigned>()->default_value(1500u), "Top k-hypotheses to extract") + ("candidate_pairs,G", po::value<unsigned>()->default_value(5000u), "Number of pairs to sample per hypothesis (Gamma)") + ("best_pairs,X", po::value<unsigned>()->default_value(50u), "Number of pairs, ranked by magnitude of objective delta, to retain (Xi)") + ("random_seed,S", po::value<uint32_t>(), "Random seed (if not specified, /dev/random will be used)") + ("help,h", "Help"); + po::options_description dcmdline_options; + dcmdline_options.add(opts); + po::store(parse_command_line(argc, argv, dcmdline_options), *conf); + bool flag = false; + if (!conf->count("reference")) { + cerr << "Please specify one or more references using -r <REF.TXT>\n"; + flag = true; + } + if (flag || conf->count("help")) { + cerr << dcmdline_options << endl; + exit(1); + } +} + +struct HypInfo { + HypInfo(const vector<WordID>& h, const SparseVector<double>& feats) : hyp(h), g_(-1), x(feats) {} + double g() { + return g_; + } + private: + int sent_id; + vector<WordID> hyp; + double g_; + public: + SparseVector<double> x; +}; + +int main(int argc, char** argv) { + po::variables_map conf; + InitCommandLine(argc, argv, &conf); + if (conf.count("random_seed")) + rng.reset(new MT19937(conf["random_seed"].as<uint32_t>())); + else + rng.reset(new MT19937); + const string loss_function = conf["loss_function"].as<string>(); + ScoreType type = ScoreTypeFromString(loss_function); + DocScorer ds(type, conf["reference"].as<vector<string> >(), conf["source"].as<string>()); + cerr << "Loaded " << ds.size() << " references for scoring with " << loss_function << endl; + Hypergraph hg; + string last_file; + ReadFile in_read(conf["input"].as<string>()); + istream &in=*in_read.stream(); + const unsigned kbest_size = conf["kbest_size"].as<unsigned>(); + const unsigned gamma = conf["candidate_pairs"].as<unsigned>(); + const unsigned xi = conf["best_pairs"].as<unsigned>(); + while(in) { + string line; + getline(in, line); + if (line.empty()) continue; + istringstream is(line); + int sent_id; + string file; + // path-to-file (JSON) sent_id + is >> file >> sent_id; + ReadFile rf(file); + HypergraphIO::ReadFromJSON(rf.stream(), &hg); + KBest::KBestDerivations<vector<WordID>, ESentenceTraversal> kbest(hg, kbest_size); + + vector<HypInfo> J_i; + for (int i = 0; i < kbest_size; ++i) { + const KBest::KBestDerivations<vector<WordID>, ESentenceTraversal>::Derivation* d = + kbest.LazyKthBest(hg.nodes_.size() - 1, i); + if (!d) break; + float sentscore = ds[sent_id]->ScoreCandidate(d->yield)->ComputeScore(); + // if (invert_score) sentscore *= -1.0; + // cerr << TD::GetString(d->yield) << " ||| " << d->score << " ||| " << sentscore << endl; + d->feature_values; + sentscore; + } + } + return 0; +} + diff --git a/pro-train/mr_pro_reduce.cc b/pro-train/mr_pro_reduce.cc new file mode 100644 index 00000000..3df52020 --- /dev/null +++ b/pro-train/mr_pro_reduce.cc @@ -0,0 +1,81 @@ +#include <sstream> +#include <iostream> +#include <fstream> +#include <vector> + +#include <boost/program_options.hpp> +#include <boost/program_options/variables_map.hpp> + +#include "sparse_vector.h" +#include "error_surface.h" +#include "line_optimizer.h" +#include "b64tools.h" + +using namespace std; +namespace po = boost::program_options; + +void InitCommandLine(int argc, char** argv, po::variables_map* conf) { + po::options_description opts("Configuration options"); + opts.add_options() + ("loss_function,l",po::value<string>(), "Loss function being optimized") + ("help,h", "Help"); + po::options_description dcmdline_options; + dcmdline_options.add(opts); + po::store(parse_command_line(argc, argv, dcmdline_options), *conf); + bool flag = conf->count("loss_function") == 0; + if (flag || conf->count("help")) { + cerr << dcmdline_options << endl; + exit(1); + } +} + +int main(int argc, char** argv) { + po::variables_map conf; + InitCommandLine(argc, argv, &conf); + const string loss_function = conf["loss_function"].as<string>(); + ScoreType type = ScoreTypeFromString(loss_function); + LineOptimizer::ScoreType opt_type = LineOptimizer::MAXIMIZE_SCORE; + if (type == TER || type == AER) { + opt_type = LineOptimizer::MINIMIZE_SCORE; + } + string last_key; + vector<ErrorSurface> esv; + while(cin) { + string line; + getline(cin, line); + if (line.empty()) continue; + size_t ks = line.find("\t"); + assert(string::npos != ks); + assert(ks > 2); + string key = line.substr(2, ks - 2); + string val = line.substr(ks + 1); + if (key != last_key) { + if (!last_key.empty()) { + float score; + double x = LineOptimizer::LineOptimize(esv, opt_type, &score); + cout << last_key << "|" << x << "|" << score << endl; + } + last_key = key; + esv.clear(); + } + if (val.size() % 4 != 0) { + cerr << "B64 encoding error 1! Skipping.\n"; + continue; + } + string encoded(val.size() / 4 * 3, '\0'); + if (!B64::b64decode(reinterpret_cast<const unsigned char*>(&val[0]), val.size(), &encoded[0], encoded.size())) { + cerr << "B64 encoding error 2! Skipping.\n"; + continue; + } + esv.push_back(ErrorSurface()); + esv.back().Deserialize(type, encoded); + } + if (!esv.empty()) { + // cerr << "ESV=" << esv.size() << endl; + // for (int i = 0; i < esv.size(); ++i) { cerr << esv[i].size() << endl; } + float score; + double x = LineOptimizer::LineOptimize(esv, opt_type, &score); + cout << last_key << "|" << x << "|" << score << endl; + } + return 0; +} |