Import synutils

1 files changed, 395 insertions, 0 deletions

diff --git a/utils/synutils/maxent-3.0/maxent.h b/utils/synutils/maxent-3.0/maxent.h
new file mode 100644
index 00000000..a4391ead
--- /dev/null
+++ b/utils/synutils/maxent-3.0/maxent.h
@@ -0,0 +1,395 @@
+/*
+ * $Id: maxent.h,v 1.1.1.1 2007/05/15 08:30:35 kyoshida Exp $
+ */
+
+#ifndef __MAXENT_H_
+#define __MAXENT_H_
+
+#include <string>
+#include <vector>
+#include <list>
+#include <map>
+#include <algorithm>
+#include <iostream>
+#include <string>
+#include <cassert>
+#include "mathvec.h"
+
+#define USE_HASH_MAP  // if you encounter errors with hash, try commenting out this line. (the program will be a bit slower, though)
+#ifdef USE_HASH_MAP
+#include <ext/hash_map>
+#endif
+
+//
+// data format for each sample for training/testing
+//
+struct ME_Sample
+{
+public:
+  ME_Sample() : label("") {};
+  ME_Sample(const std::string & l) : label(l) {};
+  void set_label(const std::string & l) { label = l; }
+
+  // to add a binary feature
+  void add_feature(const std::string & f) {
+    features.push_back(f);   
+  }
+
+  // to add a real-valued feature
+  void add_feature(const std::string & s, const double d) {
+    rvfeatures.push_back(std::pair<std::string, double>(s, d)); 
+  }
+
+public:
+  std::string label;
+  std::vector<std::string> features;
+  std::vector<std::pair<std::string, double> > rvfeatures;
+
+  // obsolete
+  void add_feature(const std::pair<std::string, double> & f) {  
+    rvfeatures.push_back(f); // real-valued features
+  }
+};
+
+
+//
+// for those who want to use load_from_array()
+//
+typedef struct ME_Model_Data
+{
+  char * label;
+  char * feature;
+  double weight;
+} ME_Model_Data;
+
+
+class ME_Model
+{
+public:
+
+  void add_training_sample(const ME_Sample & s);
+  int train();
+  std::vector<double> classify(ME_Sample & s) const;
+  bool load_from_file(const std::string & filename);
+  bool save_to_file(const std::string & filename, const double th = 0) const;
+  int num_classes() const { return _num_classes; }
+  std::string get_class_label(int i) const { return _label_bag.Str(i); }
+  int get_class_id(const std::string & s) const { return _label_bag.Id(s); }
+  void get_features(std::list< std::pair< std::pair<std::string, std::string>, double> > & fl);
+  void set_heldout(const int h, const int n = 0) { _nheldout = h; _early_stopping_n = n; };
+  void use_l1_regularizer(const double v) { _l1reg = v; }
+  void use_l2_regularizer(const double v) { _l2reg = v; }
+  void use_SGD(int iter = 30, double eta0 = 1, double alpha = 0.85) {
+    _optimization_method = SGD;
+    SGD_ITER = iter; SGD_ETA0 = eta0; SGD_ALPHA = alpha;
+  }
+  bool load_from_array(const ME_Model_Data data[]);
+  void set_reference_model(const ME_Model & ref_model) { _ref_modelp = &ref_model; };
+  void clear();
+
+  ME_Model() {
+    _l1reg = _l2reg = 0;
+    _nheldout = 0;
+    _early_stopping_n = 0;
+    _ref_modelp = NULL;
+    _optimization_method = LBFGS;
+  }
+
+public:
+  // obsolete. just for downward compatibility
+  int train(const std::vector<ME_Sample> & train);
+
+private:  
+
+  enum OPTIMIZATION_METHOD { LBFGS, OWLQN, SGD } _optimization_method;
+  // OWLQN and SGD are available only for L1-regularization
+
+  int SGD_ITER;
+  double SGD_ETA0;
+  double SGD_ALPHA;
+
+  double _l1reg, _l2reg;
+  
+  struct Sample {
+    int label;
+    std::vector<int> positive_features;
+    std::vector<std::pair<int, double> > rvfeatures;
+    std::vector<double> ref_pd; // reference probability distribution
+    bool operator<(const Sample & x) const {
+      for (unsigned int i = 0; i < positive_features.size(); i++) {
+        if (i >= x.positive_features.size()) return false;
+        int v0 = positive_features[i];
+        int v1 = x.positive_features[i];
+        if (v0 < v1) return true;
+        if (v0 > v1) return false;
+      }
+      return false;
+    }
+  };
+
+  struct ME_Feature
+  {
+    enum { MAX_LABEL_TYPES = 255 };
+      
+    //    ME_Feature(const int l, const int f) : _body((l << 24) + f) {
+    //      assert(l >= 0 && l < 256);
+    //      assert(f >= 0 && f <= 0xffffff);
+    //    };
+    //    int label() const { return _body >> 24; }
+    //    int feature() const { return _body & 0xffffff; }
+    ME_Feature(const int l, const int f) : _body((f << 8) + l) {
+      assert(l >= 0 && l <= MAX_LABEL_TYPES);
+      assert(f >= 0 && f <= 0xffffff);
+    };
+    int label() const { return _body & 0xff; }
+    int feature() const { return _body >> 8; }
+    unsigned int body() const { return _body; }
+  private:
+    unsigned int _body;
+  };
+
+  struct ME_FeatureBag
+  {
+#ifdef USE_HASH_MAP
+    typedef __gnu_cxx::hash_map<unsigned int, int> map_type;
+#else    
+    typedef std::map<unsigned int, int> map_type;
+#endif
+    map_type mef2id;
+    std::vector<ME_Feature> id2mef;
+    int Put(const ME_Feature & i) {
+      map_type::const_iterator j = mef2id.find(i.body());
+      if (j == mef2id.end()) {
+        int id = id2mef.size();
+        id2mef.push_back(i);
+        mef2id[i.body()] = id;
+        return id;
+      }
+      return j->second;
+    }
+    int Id(const ME_Feature & i) const {
+      map_type::const_iterator j = mef2id.find(i.body());
+      if (j == mef2id.end()) {
+        return -1;
+      }
+      return j->second;
+    }
+    ME_Feature Feature(int id) const {
+      assert(id >= 0 && id < (int)id2mef.size());
+      return id2mef[id];
+    }
+    int Size() const {
+      return id2mef.size();
+    }
+    void Clear() {
+      mef2id.clear();
+      id2mef.clear();
+    }
+  };
+
+  struct hashfun_str
+  {
+    size_t operator()(const std::string& s) const {
+      assert(sizeof(int) == 4 && sizeof(char) == 1);
+      const int* p = reinterpret_cast<const int*>(s.c_str());
+      size_t v = 0;
+      int n = s.size() / 4;
+      for (int i = 0; i < n; i++, p++) {
+        //      v ^= *p;
+        v ^= *p << (4 * (i % 2)); // note) 0 <= char < 128
+      }
+      int m = s.size() % 4;
+      for (int i = 0; i < m; i++) {
+        v ^= s[4 * n + i] << (i * 8);
+      }
+      return v;
+    }
+  };
+
+  struct MiniStringBag
+  {
+#ifdef USE_HASH_MAP
+    typedef __gnu_cxx::hash_map<std::string, int, hashfun_str> map_type;
+#else    
+    typedef std::map<std::string, int> map_type;
+#endif
+    int _size;
+    map_type str2id;
+    MiniStringBag() : _size(0) {}
+    int Put(const std::string & i) {
+      map_type::const_iterator j = str2id.find(i);
+      if (j == str2id.end()) {
+        int id = _size;
+        _size++;
+        str2id[i] = id;
+        return id;
+      }
+      return j->second;
+    }
+    int Id(const std::string & i) const {
+      map_type::const_iterator j = str2id.find(i);
+      if (j == str2id.end())  return -1;
+      return j->second;
+    }
+    int Size() const { return _size; }
+    void Clear() { str2id.clear(); _size = 0; }
+    map_type::const_iterator begin() const { return str2id.begin(); }
+    map_type::const_iterator end()   const { return str2id.end(); }
+  };
+
+  struct StringBag : public MiniStringBag
+  {
+    std::vector<std::string> id2str;
+    int Put(const std::string & i) {
+      map_type::const_iterator j = str2id.find(i);
+      if (j == str2id.end()) {
+        int id = id2str.size();
+        id2str.push_back(i);
+        str2id[i] = id;
+        return id;
+      }
+      return j->second;
+    }
+    std::string Str(const int id) const {
+      assert(id >= 0 && id < (int)id2str.size());
+      return id2str[id];
+    }
+    int Size() const { return id2str.size(); }
+    void Clear() {
+      str2id.clear();
+      id2str.clear();
+    }
+  };
+
+  std::vector<Sample> _vs; // vector of training_samples
+  StringBag _label_bag;
+  MiniStringBag _featurename_bag;
+  std::vector<double> _vl;  // vector of lambda
+  ME_FeatureBag _fb;
+  int _num_classes;
+  std::vector<double> _vee;  // empirical expectation
+  std::vector<double> _vme;  // empirical expectation
+  std::vector< std::vector< int > > _feature2mef;
+  std::vector< Sample > _heldout;
+  double _train_error;   // current error rate on the training data
+  double _heldout_error; // current error rate on the heldout data
+  int _nheldout;
+  int _early_stopping_n;
+  std::vector<double> _vhlogl;
+  const ME_Model * _ref_modelp;
+
+  double heldout_likelihood();
+  int conditional_probability(const Sample & nbs, std::vector<double> & membp) const;
+  int make_feature_bag(const int cutoff);
+  int classify(const Sample & nbs, std::vector<double> & membp) const;
+  double update_model_expectation();
+  int perform_QUASI_NEWTON();
+  int perform_SGD();
+  int perform_GIS(int C);
+  std::vector<double> perform_LBFGS(const std::vector<double> & x0);
+  std::vector<double> perform_OWLQN(const std::vector<double> & x0, const double C);
+  double backtracking_line_search(const Vec & x0, const Vec & grad0, const double f0, const Vec & dx, Vec & x, Vec & grad1);
+  double regularized_func_grad(const double C, const Vec & x, Vec & grad);
+  double constrained_line_search(double C, const Vec & x0, const Vec & grad0, const double f0, const Vec & dx, Vec & x, Vec & grad1);
+
+
+  void set_ref_dist(Sample & s) const;
+  void init_feature2mef();
+
+  double FunctionGradient(const std::vector<double> & x, std::vector<double> & grad);
+  static double FunctionGradientWrapper(const std::vector<double> & x, std::vector<double> & grad);
+  
+};
+
+
+#endif
+
+
+/*
+ * $Log: maxent.h,v $
+ * Revision 1.1.1.1  2007/05/15 08:30:35  kyoshida
+ * stepp tagger, by Okanohara and Tsuruoka
+ *
+ * Revision 1.24  2006/08/21 17:30:38  tsuruoka
+ * use MAX_LABEL_TYPES
+ *
+ * Revision 1.23  2006/07/25 13:19:53  tsuruoka
+ * sort _vs[]
+ *
+ * Revision 1.22  2006/07/18 11:13:15  tsuruoka
+ * modify comments
+ *
+ * Revision 1.21  2006/07/18 10:02:15  tsuruoka
+ * remove sample2feature[]
+ * speed up conditional_probability()
+ *
+ * Revision 1.20  2006/07/18 05:10:51  tsuruoka
+ * add ref_dist
+ *
+ * Revision 1.19  2005/12/23 10:33:02  tsuruoka
+ * support real-valued features
+ *
+ * Revision 1.18  2005/12/23 09:15:29  tsuruoka
+ * modify _train to reduce memory consumption
+ *
+ * Revision 1.17  2005/10/28 13:02:34  tsuruoka
+ * set_heldout(): add default value
+ * Feature()
+ *
+ * Revision 1.16  2005/09/12 13:51:16  tsuruoka
+ * Sample: list -> vector
+ *
+ * Revision 1.15  2005/09/12 13:27:10  tsuruoka
+ * add add_training_sample()
+ *
+ * Revision 1.14  2005/04/27 11:22:27  tsuruoka
+ * bugfix
+ * ME_Sample: list -> vector
+ *
+ * Revision 1.13  2005/04/27 10:20:19  tsuruoka
+ * MiniStringBag -> StringBag
+ *
+ * Revision 1.12  2005/04/27 10:00:42  tsuruoka
+ * remove tmpfb
+ *
+ * Revision 1.11  2005/04/26 14:25:53  tsuruoka
+ * add MiniStringBag, USE_HASH_MAP
+ *
+ * Revision 1.10  2004/10/04 05:50:25  tsuruoka
+ * add Clear()
+ *
+ * Revision 1.9  2004/08/09 12:27:21  tsuruoka
+ * change messages
+ *
+ * Revision 1.8  2004/08/04 13:55:19  tsuruoka
+ * modify _sample2feature
+ *
+ * Revision 1.7  2004/07/29 05:51:13  tsuruoka
+ * remove modeldata.h
+ *
+ * Revision 1.6  2004/07/28 13:42:58  tsuruoka
+ * add AGIS
+ *
+ * Revision 1.5  2004/07/28 05:54:14  tsuruoka
+ * get_class_name() -> get_class_label()
+ * ME_Feature: bugfix
+ *
+ * Revision 1.4  2004/07/27 16:58:47  tsuruoka
+ * modify the interface of classify()
+ *
+ * Revision 1.3  2004/07/26 17:23:46  tsuruoka
+ * _sample2feature: list -> vector
+ *
+ * Revision 1.2  2004/07/26 15:49:23  tsuruoka
+ * modify ME_Feature
+ *
+ * Revision 1.1  2004/07/26 13:10:55  tsuruoka
+ * add files
+ *
+ * Revision 1.18  2004/07/22 08:34:45  tsuruoka
+ * modify _sample2feature[]
+ *
+ * Revision 1.17  2004/07/21 16:33:01  tsuruoka
+ * remove some comments
+ *
+ */