fixed conflicts

1 files changed, 0 insertions, 389 deletions

diff --git a/training/mpi_em_optimize.cc b/training/mpi_em_optimize.cc
deleted file mode 100644
index 48683b15..00000000
--- a/training/mpi_em_optimize.cc
+++ /dev/null
@@ -1,389 +0,0 @@
-#include <sstream>
-#include <iostream>
-#include <vector>
-#include <cassert>
-#include <cmath>
-
-#ifdef HAVE_MPI
-#include <mpi.h>
-#endif
-
-#include <boost/shared_ptr.hpp>
-#include <boost/program_options.hpp>
-#include <boost/program_options/variables_map.hpp>
-
-#include "verbose.h"
-#include "hg.h"
-#include "prob.h"
-#include "inside_outside.h"
-#include "ff_register.h"
-#include "decoder.h"
-#include "filelib.h"
-#include "optimize.h"
-#include "fdict.h"
-#include "weights.h"
-#include "sparse_vector.h"
-
-using namespace std;
-using boost::shared_ptr;
-namespace po = boost::program_options;
-
-void SanityCheck(const vector<double>& w) {
-  for (int i = 0; i < w.size(); ++i) {
-    assert(!isnan(w[i]));
-    assert(!isinf(w[i]));
-  }
-}
-
-struct FComp {
-  const vector<double>& w_;
-  FComp(const vector<double>& w) : w_(w) {}
-  bool operator()(int a, int b) const {
-    return fabs(w_[a]) > fabs(w_[b]);
-  }
-};
-
-void ShowLargestFeatures(const vector<double>& w) {
-  vector<int> fnums(w.size());
-  for (int i = 0; i < w.size(); ++i)
-    fnums[i] = i;
-  vector<int>::iterator mid = fnums.begin();
-  mid += (w.size() > 10 ? 10 : w.size());
-  partial_sort(fnums.begin(), mid, fnums.end(), FComp(w));
-  cerr << "TOP FEATURES:";
-  for (vector<int>::iterator i = fnums.begin(); i != mid; ++i) {
-    cerr << ' ' << FD::Convert(*i) << '=' << w[*i];
-  }
-  cerr << endl;
-}
-
-void InitCommandLine(int argc, char** argv, po::variables_map* conf) {
-  po::options_description opts("Configuration options");
-  opts.add_options()
-        ("input_weights,w",po::value<string>(),"Input feature weights file")
-        ("training_data,t",po::value<string>(),"Training data")
-        ("decoder_config,c",po::value<string>(),"Decoder configuration file")
-        ("output_weights,o",po::value<string>()->default_value("-"),"Output feature weights file");
-  po::options_description clo("Command line options");
-  clo.add_options()
-        ("config", po::value<string>(), "Configuration file")
-        ("help,h", "Print this help message and exit");
-  po::options_description dconfig_options, dcmdline_options;
-  dconfig_options.add(opts);
-  dcmdline_options.add(opts).add(clo);
-  
-  po::store(parse_command_line(argc, argv, dcmdline_options), *conf);
-  if (conf->count("config")) {
-    ifstream config((*conf)["config"].as<string>().c_str());
-    po::store(po::parse_config_file(config, dconfig_options), *conf);
-  }
-  po::notify(*conf);
-
-  if (conf->count("help") || !(conf->count("training_data")) || !conf->count("decoder_config")) {
-    cerr << dcmdline_options << endl;
-#ifdef HAVE_MPI
-    MPI::Finalize();
-#endif
-    exit(1);
-  }
-}
-
-void ReadTrainingCorpus(const string& fname, int rank, int size, vector<string>* c) {
-  ReadFile rf(fname);
-  istream& in = *rf.stream();
-  string line;
-  int lc = 0;
-  while(in) {
-    getline(in, line);
-    if (!in) break;
-    if (lc % size == rank) c->push_back(line);
-    ++lc;
-  }
-}
-
-static const double kMINUS_EPSILON = -1e-6;
-
-struct TrainingObserver : public DecoderObserver {
-  void Reset() {
-    total_complete = 0;
-    cur_obj = 0;
-    tot_obj = 0;
-    tot.clear();
-  } 
-
-  void SetLocalGradientAndObjective(SparseVector<double>* g, double* o) const {
-    *o = tot_obj;
-    *g = tot;
-  }
-
-  virtual void NotifyDecodingStart(const SentenceMetadata& smeta) {
-    cur_obj = 0;
-    state = 1;
-  }
-
-  void ExtractExpectedCounts(Hypergraph* hg) {
-    vector<prob_t> posts;
-    cur.clear();
-    const prob_t z = hg->ComputeEdgePosteriors(1.0, &posts);
-    cur_obj = log(z);
-    for (int i = 0; i < posts.size(); ++i) {
-      const SparseVector<double>& efeats = hg->edges_[i].feature_values_;
-      const double post = static_cast<double>(posts[i] / z);
-      for (SparseVector<double>::const_iterator j = efeats.begin(); j != efeats.end(); ++j)
-        cur.add_value(j->first, post);
-    }
-  }
-
-  // compute model expectations, denominator of objective
-  virtual void NotifyTranslationForest(const SentenceMetadata& smeta, Hypergraph* hg) {
-    assert(state == 1);
-    state = 2;
-    ExtractExpectedCounts(hg);
-  }
-
-  // replace translation forest, since we're doing EM training (we don't know which)
-  virtual void NotifyAlignmentForest(const SentenceMetadata& smeta, Hypergraph* hg) {
-    assert(state == 2);
-    state = 3;
-    ExtractExpectedCounts(hg);
-  }
-
-  virtual void NotifyDecodingComplete(const SentenceMetadata& smeta) {
-    ++total_complete;
-    tot_obj += cur_obj;
-    tot += cur;
-  }
-
-  int total_complete;
-  double cur_obj;
-  double tot_obj;
-  SparseVector<double> cur, tot;
-  int state;
-};
-
-void ReadConfig(const string& ini, vector<string>* out) {
-  ReadFile rf(ini);
-  istream& in = *rf.stream();
-  while(in) {
-    string line;
-    getline(in, line);
-    if (!in) continue;
-    out->push_back(line);
-  }
-}
-
-void StoreConfig(const vector<string>& cfg, istringstream* o) {
-  ostringstream os;
-  for (int i = 0; i < cfg.size(); ++i) { os << cfg[i] << endl; }
-  o->str(os.str());
-}
-
-struct OptimizableMultinomialFamily {
-  struct CPD {
-    CPD() : z() {}
-    double z;
-    map<WordID, double> c2counts;
-  };
-  map<WordID, CPD> counts;
-  double Value(WordID conditioning, WordID generated) const {
-    map<WordID, CPD>::const_iterator it = counts.find(conditioning);
-    assert(it != counts.end());
-    map<WordID,double>::const_iterator r = it->second.c2counts.find(generated);
-    if (r == it->second.c2counts.end()) return 0;
-    return r->second;
-  }
-  void Increment(WordID conditioning, WordID generated, double count) {
-    CPD& cc = counts[conditioning];
-    cc.z += count;
-    cc.c2counts[generated] += count;
-  }
-  void Optimize() {
-    for (map<WordID, CPD>::iterator i = counts.begin(); i != counts.end(); ++i) {
-      CPD& cpd = i->second;
-      for (map<WordID, double>::iterator j = cpd.c2counts.begin(); j != cpd.c2counts.end(); ++j) {
-        j->second /= cpd.z;
-        // cerr << "P(" << TD::Convert(j->first) << " | " << TD::Convert(i->first) << " ) =  " << j->second << endl;
-      }
-    }
-  }
-  void Clear() {
-    counts.clear();
-  }
-};
-
-struct CountManager {
-  CountManager(size_t num_types) : oms_(num_types) {}
-  virtual ~CountManager();
-  virtual void AddCounts(const SparseVector<double>& c) = 0;
-  void Optimize(SparseVector<double>* weights) {
-    for (int i = 0; i < oms_.size(); ++i) {
-      oms_[i].Optimize();
-    }
-    GetOptimalValues(weights);
-    for (int i = 0; i < oms_.size(); ++i) {
-      oms_[i].Clear();
-    }
-  }
-  virtual void GetOptimalValues(SparseVector<double>* wv) const = 0;
-  vector<OptimizableMultinomialFamily> oms_;
-};
-CountManager::~CountManager() {}
-
-struct TaggerCountManager : public CountManager {
-  // 0 = transitions, 2 = emissions
-  TaggerCountManager() : CountManager(2) {}
-  void AddCounts(const SparseVector<double>& c);
-  void GetOptimalValues(SparseVector<double>* wv) const {
-    for (set<int>::const_iterator it = fids_.begin(); it != fids_.end(); ++it) {
-      int ftype;
-      WordID cond, gen;
-      bool is_optimized = TaggerCountManager::GetFeature(*it, &ftype, &cond, &gen);
-      assert(is_optimized);
-      wv->set_value(*it, log(oms_[ftype].Value(cond, gen)));
-    }
-  }
-  // Id:0:a=1 Bi:a_b=1 Bi:b_c=1 Bi:c_d=1 Uni:a=1 Uni:b=1 Uni:c=1 Uni:d=1 Id:1:b=1 Bi:BOS_a=1 Id:2:c=1
-  static bool GetFeature(const int fid, int* feature_type, WordID* cond, WordID* gen) {
-    const string& feat = FD::Convert(fid);
-    if (feat.size() > 5 && feat[0] == 'I' && feat[1] == 'd' && feat[2] == ':') {
-      // emission
-      const size_t p = feat.rfind(':');
-      assert(p != string::npos);
-      *cond = TD::Convert(feat.substr(p+1));
-      *gen = TD::Convert(feat.substr(3, p - 3));
-      *feature_type = 1;
-      return true;
-    } else if (feat[0] == 'B' && feat.size() > 5 && feat[2] == ':' && feat[1] == 'i') {
-      // transition
-      const size_t p = feat.rfind('_');
-      assert(p != string::npos);
-      *gen = TD::Convert(feat.substr(p+1));
-      *cond = TD::Convert(feat.substr(3, p - 3));
-      *feature_type = 0;
-      return true;
-    } else if (feat[0] == 'U' && feat.size() > 4 && feat[1] == 'n' && feat[2] == 'i' && feat[3] == ':') {
-      // ignore
-      return false;
-    } else {
-      cerr << "Don't know how to deal with feature of type: " << feat << endl;
-      abort();
-    }
-  }
-  set<int> fids_;
-};
-
-void TaggerCountManager::AddCounts(const SparseVector<double>& c) {
-  for (SparseVector<double>::const_iterator it = c.begin(); it != c.end(); ++it) {
-    const double& val = it->second;
-    int ftype;
-    WordID cond, gen;
-    if (GetFeature(it->first, &ftype, &cond, &gen)) {
-      oms_[ftype].Increment(cond, gen, val);
-      fids_.insert(it->first);
-    }
-  }
-}
-
-int main(int argc, char** argv) {
-#ifdef HAVE_MPI
-  MPI::Init(argc, argv);
-  const int size = MPI::COMM_WORLD.Get_size(); 
-  const int rank = MPI::COMM_WORLD.Get_rank();
-#else
-  const int size = 1;
-  const int rank = 0;
-#endif
-  SetSilent(true);  // turn off verbose decoder output
-  register_feature_functions();
-
-  po::variables_map conf;
-  InitCommandLine(argc, argv, &conf);
-
-  TaggerCountManager tcm;
-
-  // load cdec.ini and set up decoder
-  vector<string> cdec_ini;
-  ReadConfig(conf["decoder_config"].as<string>(), &cdec_ini);
-  istringstream ini;
-  StoreConfig(cdec_ini, &ini);
-  if (rank == 0) cerr << "Loading grammar...\n";
-  Decoder* decoder = new Decoder(&ini);
-  if (decoder->GetConf()["input"].as<string>() != "-") {
-    cerr << "cdec.ini must not set an input file\n";
-#ifdef HAVE_MPI
-    MPI::COMM_WORLD.Abort(1);
-#endif
-  }
-  if (rank == 0) cerr << "Done loading grammar!\n";
-  Weights w;
-  if (conf.count("input_weights"))
-    w.InitFromFile(conf["input_weights"].as<string>());
-
-  double objective = 0;
-  bool converged = false;
-
-  vector<double> lambdas;
-  w.InitVector(&lambdas);
-  vector<string> corpus;
-  ReadTrainingCorpus(conf["training_data"].as<string>(), rank, size, &corpus);
-  assert(corpus.size() > 0);
-
-  int iteration = 0;
-  TrainingObserver observer;
-  while (!converged) {
-    ++iteration;
-    observer.Reset();
-    if (rank == 0) {
-      cerr << "Starting decoding... (~" << corpus.size() << " sentences / proc)\n";
-    }
-    decoder->SetWeights(lambdas);
-    for (int i = 0; i < corpus.size(); ++i)
-      decoder->Decode(corpus[i], &observer);
-
-    SparseVector<double> x;
-    observer.SetLocalGradientAndObjective(&x, &objective);
-    cerr << "COUNTS = " << x << endl;
-    cerr << "   OBJ = " << objective << endl;
-    tcm.AddCounts(x);
-
-#if 0
-#ifdef HAVE_MPI
-    MPI::COMM_WORLD.Reduce(const_cast<double*>(&gradient.data()[0]), &rcv_grad[0], num_feats, MPI::DOUBLE, MPI::SUM, 0);
-    MPI::COMM_WORLD.Reduce(&objective, &to, 1, MPI::DOUBLE, MPI::SUM, 0);
-    swap(gradient, rcv_grad);
-    objective = to;
-#endif
-#endif
-
-    if (rank == 0) {
-      SparseVector<double> wsv;
-      tcm.Optimize(&wsv);
-
-      w.InitFromVector(wsv);
-      w.InitVector(&lambdas);
-
-      ShowLargestFeatures(lambdas);
-
-      converged = iteration > 100;
-      if (converged) { cerr << "OPTIMIZER REPORTS CONVERGENCE!\n"; }
-
-      string fname = "weights.cur.gz";
-      if (converged) { fname = "weights.final.gz"; }
-      ostringstream vv;
-      vv << "Objective = " << objective << "  (ITERATION=" << iteration << ")";
-      const string svv = vv.str();
-      w.WriteToFile(fname, true, &svv);
-    }  // rank == 0
-    int cint = converged;
-#ifdef HAVE_MPI
-    MPI::COMM_WORLD.Bcast(const_cast<double*>(&lambdas.data()[0]), num_feats, MPI::DOUBLE, 0);
-    MPI::COMM_WORLD.Bcast(&cint, 1, MPI::INT, 0);
-    MPI::COMM_WORLD.Barrier();
-#endif
-    converged = cint;
-  }
-#ifdef HAVE_MPI
-  MPI::Finalize(); 
-#endif
-  return 0;
-}