merge paul's extractor code

7 files changed, 11126 insertions, 11574 deletions

diff --git a/python/pkg/cdec/sa/compile.py b/python/pkg/cdec/sa/compile.py
index ce249c0f..d4cd8387 100644
--- a/python/pkg/cdec/sa/compile.py
+++ b/python/pkg/cdec/sa/compile.py
@@ -4,6 +4,7 @@ import os
 import logging
 import cdec.configobj
 import cdec.sa
+from cdec.sa._sa import monitor_cpu
 import sys
 
 MAX_PHRASE_LENGTH = 4
@@ -21,6 +22,7 @@ def precompute(f_sa, max_len, max_nt, max_size, min_gap, rank1, rank2, tight_phr
     return precomp
 
 def main():
+    preprocess_start_time = monitor_cpu()
     sys.setrecursionlimit(sys.getrecursionlimit() * 100)
 
     logging.basicConfig(level=logging.INFO)
@@ -73,31 +75,46 @@ def main():
     a_bin = os.path.join(args.output, 'a.bin')
     lex_bin = os.path.join(args.output, 'lex.bin')
 
+    start_time = monitor_cpu()
     logger.info('Compiling source suffix array')
     if args.bitext:
         f_sa = cdec.sa.SuffixArray(from_text=args.bitext, side='source')
     else:
         f_sa = cdec.sa.SuffixArray(from_text=args.source)
     f_sa.write_binary(f_sa_bin)
+    stop_time = monitor_cpu()
+    logger.info('Compiling source suffix array took %f seconds', stop_time - start_time)
 
+    start_time = monitor_cpu()
     logger.info('Compiling target data array')
     if args.bitext:
         e = cdec.sa.DataArray(from_text=args.bitext, side='target')
     else:
         e = cdec.sa.DataArray(from_text=args.target)
     e.write_binary(e_bin)
+    stop_time = monitor_cpu()
+    logger.info('Compiling target data array took %f seconds', stop_time - start_time)
 
+    start_time = monitor_cpu()
     logger.info('Precomputing frequent phrases')
     precompute(f_sa, *params).write_binary(precomp_bin)
+    stop_time = monitor_cpu()
+    logger.info('Compiling precomputations took %f seconds', stop_time - start_time)
 
+    start_time = monitor_cpu()
     logger.info('Compiling alignment')
     a = cdec.sa.Alignment(from_text=args.alignment)
     a.write_binary(a_bin)
+    stop_time = monitor_cpu()
+    logger.info('Compiling alignment took %f seonds', stop_time - start_time)
 
+    start_time = monitor_cpu()
     logger.info('Compiling bilexical dictionary')
     lex = cdec.sa.BiLex(from_data=True, alignment=a, earray=e, fsarray=f_sa)
     lex.write_binary(lex_bin)
-    
+    stop_time = monitor_cpu()
+    logger.info('Compiling bilexical dictionary took %f seconds', stop_time - start_time)
+
     # Write configuration
     config = cdec.configobj.ConfigObj(args.config, unrepr=True)
     config['f_sa_file'] = os.path.abspath(f_sa_bin)
@@ -108,6 +125,8 @@ def main():
     for name, value in zip(param_names, params):
         config[name] = value
     config.write()
+    preprocess_stop_time = monitor_cpu()
+    logger.info('Overall preprocessing step took %f seconds', preprocess_stop_time - preprocess_start_time)
 
 if __name__ == '__main__':
     main()
diff --git a/python/pkg/cdec/sa/extract.py b/python/pkg/cdec/sa/extract.py
index bf39d080..b6502c52 100644
--- a/python/pkg/cdec/sa/extract.py
+++ b/python/pkg/cdec/sa/extract.py
@@ -8,6 +8,7 @@ import logging
 import signal
 import multiprocessing as mp
 import cdec.sa
+from cdec.sa._sa import monitor_cpu
 
 extractor, prefix = None, None
 online, compress = False, False
@@ -88,9 +89,10 @@ def main():
             sys.stderr.write('Error: feature definition file <{}>'
                     ' should be a python module\n'.format(featdef))
             sys.exit(1)
-    
+
     online = args.online
 
+    start_time = monitor_cpu()
     if args.jobs > 1:
         logging.info('Starting %d workers; chunk size: %d', args.jobs, args.chunksize)
         pool = mp.Pool(args.jobs, make_extractor, (args,))
@@ -104,5 +106,8 @@ def main():
         for output in map(extract, enumerate(sys.stdin)):
             print(output)
 
+    stop_time = monitor_cpu()
+    logging.info("Overall extraction step took %f seconds", stop_time - start_time)
+
 if __name__ == '__main__':
     main()
diff --git a/python/pkg/cdec/sa/features.py b/python/pkg/cdec/sa/features.py
index 46412cd5..c8fc1cca 100644
--- a/python/pkg/cdec/sa/features.py
+++ b/python/pkg/cdec/sa/features.py
@@ -105,7 +105,7 @@ def IsSingletonF(ctx):
         count = ctx.fcount
     else:
         count = ctx.fcount + ctx.online.fcount  
-    return (count == 1)
+    return math.fabs(count - 1) < 1e-6
 
 def IsSingletonFE(ctx):
     if not ctx.online:
@@ -139,4 +139,4 @@ def IsSupportedOnline(ctx): # Occurs in online data?
     if ctx.online:
         return (ctx.online.paircount > 0.01)
     else:
-        return False
\ No newline at end of file
+        return False
diff --git a/python/src/_cdec.cpp b/python/src/_cdec.cpp
index 770b422c..4b950f01 100644
--- a/python/src/_cdec.cpp
+++ b/python/src/_cdec.cpp
@@ -1,4 +1,4 @@
-/* Generated by Cython 0.18 on Thu Feb 21 19:39:13 2013 */
+/* Generated by Cython 0.18 on Tue Apr 23 18:41:37 2013 */
 
 #define PY_SSIZE_T_CLEAN
 #include "Python.h"
@@ -441,7 +441,7 @@ struct __pyx_opt_args_5_cdec_as_str {
   char *error_msg;
 };
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":25
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":25
  *     cdef void read_handle(self, FILE* f)
  * 
  * cdef class FeatureVector:             # <<<<<<<<<<<<<<
@@ -468,7 +468,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_24___init__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":21
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":21
  *         return '[%s]' % self.cat
  * 
  * cdef class NTRef:             # <<<<<<<<<<<<<<
@@ -481,7 +481,7 @@ struct __pyx_obj_5_cdec_NTRef {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":121
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":121
  *         return CandidateSet(self)
  * 
  * cdef class Scorer:             # <<<<<<<<<<<<<<
@@ -495,7 +495,7 @@ struct __pyx_obj_5_cdec_Scorer {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":12
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":12
  *     cdef void read_handle(self, FILE* f)
  * 
  * cdef class IntList:             # <<<<<<<<<<<<<<
@@ -512,7 +512,7 @@ struct __pyx_obj_4cdec_2sa_3_sa_IntList {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":29
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":29
  *     cdef FloatList values
  * 
  * cdef class Phrase:             # <<<<<<<<<<<<<<
@@ -529,7 +529,7 @@ struct __pyx_obj_4cdec_2sa_3_sa_Phrase {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":90
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":90
  *         return candidate
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -545,7 +545,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_22___iter__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":193
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":193
  *         super(MRule, self).__init__(lhs, rhs, e, scores, None)
  * 
  * cdef class Grammar:             # <<<<<<<<<<<<<<
@@ -558,7 +558,7 @@ struct __pyx_obj_5_cdec_Grammar {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":63
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":63
  *     def todot(self):
  *         """lattice.todot() -> Representation of the lattice in GraphViz dot format."""
  *         def lines():             # <<<<<<<<<<<<<<
@@ -581,7 +581,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_20_lines {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":108
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":108
  *             del hypos
  * 
  *     def sample_trees(self, unsigned n):             # <<<<<<<<<<<<<<
@@ -599,7 +599,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_12_sample_trees {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":161
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":161
  * 
  *     property edges:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -615,7 +615,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_13___get__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":5
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":5
  * import cdec.sa._sa as _sa
  * 
  * def _phrase(phrase):             # <<<<<<<<<<<<<<
@@ -628,7 +628,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_2__phrase {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":65
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":65
  *         return result
  * 
  * cdef class CandidateSet:             # <<<<<<<<<<<<<<
@@ -643,7 +643,7 @@ struct __pyx_obj_5_cdec_CandidateSet {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":167
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":167
  * 
  *     property nodes:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -659,7 +659,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_14___get__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":49
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":49
  *     return TRule(lhs, f, e, scores, a)
  * 
  * cdef class TRule:             # <<<<<<<<<<<<<<
@@ -672,7 +672,7 @@ struct __pyx_obj_5_cdec_TRule {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":35
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":35
  *     cdef public int chunklen(self, int k)
  * 
  * cdef class Rule:             # <<<<<<<<<<<<<<
@@ -690,7 +690,7 @@ struct __pyx_obj_4cdec_2sa_3_sa_Rule {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":177
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":177
  *                 _phrase(self.f), _phrase(self.e), scores)
  * 
  * cdef class MRule(TRule):             # <<<<<<<<<<<<<<
@@ -702,7 +702,7 @@ struct __pyx_obj_5_cdec_MRule {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":100
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":100
  *         self.cs.AddKBestCandidates(hypergraph.hg[0], k, self.scorer.get())
  * 
  * cdef class SegmentEvaluator:             # <<<<<<<<<<<<<<
@@ -733,7 +733,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_25_genexpr {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":61
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":61
  *             yield self[i]
  * 
  *     def todot(self):             # <<<<<<<<<<<<<<
@@ -746,7 +746,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_19_todot {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":12
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":12
  *         return stats
  * 
  * cdef class Candidate:             # <<<<<<<<<<<<<<
@@ -760,7 +760,7 @@ struct __pyx_obj_5_cdec_Candidate {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":173
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":173
  * 
  *     def __str__(self):
  *         scores = ' '.join('%s=%s' % feat for feat in self.scores)             # <<<<<<<<<<<<<<
@@ -777,7 +777,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_6_genexpr {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":8
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":8
  *     return ' '.join(w.encode('utf8') if isinstance(w, unicode) else str(w) for w in phrase)
  * 
  * cdef class NT:             # <<<<<<<<<<<<<<
@@ -791,7 +791,7 @@ struct __pyx_obj_5_cdec_NT {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":3
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":3
  * from libc.stdio cimport FILE
  * 
  * cdef class FloatList:             # <<<<<<<<<<<<<<
@@ -808,7 +808,7 @@ struct __pyx_obj_4cdec_2sa_3_sa_FloatList {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":196
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":196
  *         return vector
  * 
  * cdef class HypergraphEdge:             # <<<<<<<<<<<<<<
@@ -824,7 +824,7 @@ struct __pyx_obj_5_cdec_HypergraphEdge {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":72
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":72
  *         self.vector.set_value(fid, value)
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -841,7 +841,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_1___iter__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":256
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":256
  * 
  *     property in_edges:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -857,7 +857,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_16___get__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":131
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":131
  * 
  *     property a:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -874,7 +874,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_4___get__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":56
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":56
  *         return unicode(str(self), 'utf8')
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -904,7 +904,7 @@ struct __pyx_obj_5_cdec_Decoder {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":246
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":246
  *         raise NotImplemented('comparison not implemented for HypergraphEdge')
  * 
  * cdef class HypergraphNode:             # <<<<<<<<<<<<<<
@@ -919,7 +919,7 @@ struct __pyx_obj_5_cdec_HypergraphNode {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":48
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":48
  *         return sparse
  * 
  * cdef class SparseVector:             # <<<<<<<<<<<<<<
@@ -932,7 +932,7 @@ struct __pyx_obj_5_cdec_SparseVector {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":262
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":262
  * 
  *     property out_edges:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -948,7 +948,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_17___get__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":32
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":32
  *         self.vector[0][fid] = value
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -964,7 +964,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct____iter__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":44
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":44
  *         return self.stats.size()
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -981,7 +981,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_21___iter__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":3
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":3
  * from cython.operator cimport preincrement as pinc
  * 
  * cdef class DenseVector:             # <<<<<<<<<<<<<<
@@ -995,7 +995,7 @@ struct __pyx_obj_5_cdec_DenseVector {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":199
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":199
  *         del self.grammar
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -1014,7 +1014,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_7___iter__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":176
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":176
  *         out.fields[i] = ss[i]
  * 
  * cdef class Metric:             # <<<<<<<<<<<<<<
@@ -1027,7 +1027,7 @@ struct __pyx_obj_5_cdec_Metric {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":26
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":26
  *             return fmap
  * 
  * cdef class SufficientStats:             # <<<<<<<<<<<<<<
@@ -1041,7 +1041,7 @@ struct __pyx_obj_5_cdec_SufficientStats {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":49
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":49
  *         return unicode(hypergraph.JoshuaVisualizationString(self.hg[0]).c_str(), 'utf8')
  * 
  *     def kbest(self, size):             # <<<<<<<<<<<<<<
@@ -1060,7 +1060,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_8_kbest {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":81
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":81
  *             del e_derivations
  * 
  *     def kbest_features(self, size):             # <<<<<<<<<<<<<<
@@ -1080,7 +1080,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_10_kbest_features {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":216
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":216
  * 
  *     property tail_nodes:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -1096,7 +1096,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_15___get__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":172
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":172
  *             self.rule.get().lhs_ = -TDConvert((<NT> lhs).cat)
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -1109,7 +1109,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_5___str__ {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":6
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":6
  * 
  * def _phrase(phrase):
  *     return ' '.join(w.encode('utf8') if isinstance(w, unicode) else str(w) for w in phrase)             # <<<<<<<<<<<<<<
@@ -1126,7 +1126,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_3_genexpr {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":62
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":62
  *             del derivations
  * 
  *     def kbest_trees(self, size):             # <<<<<<<<<<<<<<
@@ -1149,7 +1149,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_9_kbest_trees {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":4
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":4
  * cimport kbest
  * 
  * cdef class Hypergraph:             # <<<<<<<<<<<<<<
@@ -1164,7 +1164,7 @@ struct __pyx_obj_5_cdec_Hypergraph {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":3
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":3
  * cimport lattice
  * 
  * cdef class Lattice:             # <<<<<<<<<<<<<<
@@ -1177,7 +1177,7 @@ struct __pyx_obj_5_cdec_Lattice {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":97
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":97
  *             del derivations
  * 
  *     def sample(self, unsigned n):             # <<<<<<<<<<<<<<
@@ -1218,7 +1218,7 @@ struct __pyx_obj_5_cdec___pyx_scope_struct_23__make_config {
 };
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":217
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":217
  *             self.grammar.get().SetGrammarName(name)
  * 
  * cdef class TextGrammar(Grammar):             # <<<<<<<<<<<<<<
@@ -1231,7 +1231,7 @@ struct __pyx_obj_5_cdec_TextGrammar {
 
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":4
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":4
  * cimport kbest
  * 
  * cdef class Hypergraph:             # <<<<<<<<<<<<<<
@@ -1245,7 +1245,7 @@ struct __pyx_vtabstruct_5_cdec_Hypergraph {
 static struct __pyx_vtabstruct_5_cdec_Hypergraph *__pyx_vtabptr_5_cdec_Hypergraph;
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":196
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":196
  *         return vector
  * 
  * cdef class HypergraphEdge:             # <<<<<<<<<<<<<<
@@ -1259,7 +1259,7 @@ struct __pyx_vtabstruct_5_cdec_HypergraphEdge {
 static struct __pyx_vtabstruct_5_cdec_HypergraphEdge *__pyx_vtabptr_5_cdec_HypergraphEdge;
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":12
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":12
  *     cdef void read_handle(self, FILE* f)
  * 
  * cdef class IntList:             # <<<<<<<<<<<<<<
@@ -1279,7 +1279,7 @@ struct __pyx_vtabstruct_4cdec_2sa_3_sa_IntList {
 static struct __pyx_vtabstruct_4cdec_2sa_3_sa_IntList *__pyx_vtabptr_4cdec_2sa_3_sa_IntList;
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":3
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":3
  * from libc.stdio cimport FILE
  * 
  * cdef class FloatList:             # <<<<<<<<<<<<<<
@@ -1295,7 +1295,7 @@ struct __pyx_vtabstruct_4cdec_2sa_3_sa_FloatList {
 static struct __pyx_vtabstruct_4cdec_2sa_3_sa_FloatList *__pyx_vtabptr_4cdec_2sa_3_sa_FloatList;
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/cdec.sa._sa.pxd":29
+/* "/usr0/home/cdyer/cdec-merge/python/src/cdec.sa._sa.pxd":29
  *     cdef FloatList values
  * 
  * cdef class Phrase:             # <<<<<<<<<<<<<<
@@ -1310,7 +1310,7 @@ struct __pyx_vtabstruct_4cdec_2sa_3_sa_Phrase {
 static struct __pyx_vtabstruct_4cdec_2sa_3_sa_Phrase *__pyx_vtabptr_4cdec_2sa_3_sa_Phrase;
 
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":246
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":246
  *         raise NotImplemented('comparison not implemented for HypergraphEdge')
  * 
  * cdef class HypergraphNode:             # <<<<<<<<<<<<<<
@@ -2049,7 +2049,7 @@ static char __pyx_k_26[] = "digraph lattice {";
   static char __pyx_k_31[] = "\\\"";
   static char __pyx_k_33[] = "%d [shape=doublecircle]";
 static char __pyx_k_34[] = "}";
-static char __pyx_k_37[] = "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi";
+static char __pyx_k_37[] = "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi";
 static char __pyx_k_38[] = "Lattice.todot.<locals>.lines";
 static char __pyx_k_39[] = "\n";
 static char __pyx_k_41[] = "sufficient stats vector index out of range";
@@ -2062,8 +2062,8 @@ static char __pyx_k_49[] = "#";
 static char __pyx_k_52[] = "Cannot translate input type %s";
 static char __pyx_k_53[] = "cdec.sa._sa";
 static char __pyx_k_54[] = "*";
-static char __pyx_k_57[] = "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi";
-static char __pyx_k_65[] = "/home/jmflanig/tools/cdec-jflanig/python/src/_cdec.pyx";
+static char __pyx_k_57[] = "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi";
+static char __pyx_k_65[] = "/usr0/home/cdyer/cdec-merge/python/src/_cdec.pyx";
 static char __pyx_k__a[] = "a";
 static char __pyx_k__e[] = "e";
 static char __pyx_k__f[] = "f";
@@ -2476,7 +2476,7 @@ static int __pyx_pw_5_cdec_11DenseVector_1__init__(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":7
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":7
  *     cdef bint owned # if True, do not manage memory
  * 
  *     def __init__(self):             # <<<<<<<<<<<<<<
@@ -2493,7 +2493,7 @@ static int __pyx_pf_5_cdec_11DenseVector___init__(struct __pyx_obj_5_cdec_DenseV
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":9
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":9
  *     def __init__(self):
  *         """DenseVector() -> Dense weight/feature vector."""
  *         self.vector = new vector[weight_t]()             # <<<<<<<<<<<<<<
@@ -2508,7 +2508,7 @@ static int __pyx_pf_5_cdec_11DenseVector___init__(struct __pyx_obj_5_cdec_DenseV
   }
   __pyx_v_self->vector = __pyx_t_1;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":10
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":10
  *         """DenseVector() -> Dense weight/feature vector."""
  *         self.vector = new vector[weight_t]()
  *         self.owned = False             # <<<<<<<<<<<<<<
@@ -2536,7 +2536,7 @@ static void __pyx_pw_5_cdec_11DenseVector_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":12
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":12
  *         self.owned = False
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -2549,7 +2549,7 @@ static void __pyx_pf_5_cdec_11DenseVector_2__dealloc__(struct __pyx_obj_5_cdec_D
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":13
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":13
  * 
  *     def __dealloc__(self):
  *         if not self.owned:             # <<<<<<<<<<<<<<
@@ -2559,7 +2559,7 @@ static void __pyx_pf_5_cdec_11DenseVector_2__dealloc__(struct __pyx_obj_5_cdec_D
   __pyx_t_1 = (!__pyx_v_self->owned);
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":14
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":14
  *     def __dealloc__(self):
  *         if not self.owned:
  *             del self.vector             # <<<<<<<<<<<<<<
@@ -2585,7 +2585,7 @@ static Py_ssize_t __pyx_pw_5_cdec_11DenseVector_5__len__(PyObject *__pyx_v_self)
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":16
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":16
  *             del self.vector
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -2598,7 +2598,7 @@ static Py_ssize_t __pyx_pf_5_cdec_11DenseVector_4__len__(struct __pyx_obj_5_cdec
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":17
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":17
  * 
  *     def __len__(self):
  *         return self.vector.size()             # <<<<<<<<<<<<<<
@@ -2635,7 +2635,7 @@ static PyObject *__pyx_pw_5_cdec_11DenseVector_7__getitem__(PyObject *__pyx_v_se
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":19
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":19
  *         return self.vector.size()
  * 
  *     def __getitem__(self, char* fname):             # <<<<<<<<<<<<<<
@@ -2655,7 +2655,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_6__getitem__(struct __pyx_obj_5_c
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__getitem__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":20
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":20
  * 
  *     def __getitem__(self, char* fname):
  *         cdef int fid = FDConvert(fname)             # <<<<<<<<<<<<<<
@@ -2664,7 +2664,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_6__getitem__(struct __pyx_obj_5_c
  */
   __pyx_v_fid = FD::Convert(__pyx_v_fname);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":21
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":21
  *     def __getitem__(self, char* fname):
  *         cdef int fid = FDConvert(fname)
  *         if 0 <= fid < self.vector.size():             # <<<<<<<<<<<<<<
@@ -2677,7 +2677,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_6__getitem__(struct __pyx_obj_5_c
   }
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":22
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":22
  *         cdef int fid = FDConvert(fname)
  *         if 0 <= fid < self.vector.size():
  *             return self.vector[0][fid]             # <<<<<<<<<<<<<<
@@ -2694,7 +2694,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_6__getitem__(struct __pyx_obj_5_c
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":23
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":23
  *         if 0 <= fid < self.vector.size():
  *             return self.vector[0][fid]
  *         raise KeyError(fname)             # <<<<<<<<<<<<<<
@@ -2753,7 +2753,7 @@ static int __pyx_pw_5_cdec_11DenseVector_9__setitem__(PyObject *__pyx_v_self, Py
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":25
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":25
  *         raise KeyError(fname)
  * 
  *     def __setitem__(self, char* fname, float value):             # <<<<<<<<<<<<<<
@@ -2773,7 +2773,7 @@ static int __pyx_pf_5_cdec_11DenseVector_8__setitem__(struct __pyx_obj_5_cdec_De
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__setitem__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":26
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":26
  * 
  *     def __setitem__(self, char* fname, float value):
  *         cdef int fid = FDConvert(fname)             # <<<<<<<<<<<<<<
@@ -2782,7 +2782,7 @@ static int __pyx_pf_5_cdec_11DenseVector_8__setitem__(struct __pyx_obj_5_cdec_De
  */
   __pyx_v_fid = FD::Convert(__pyx_v_fname);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":27
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":27
  *     def __setitem__(self, char* fname, float value):
  *         cdef int fid = FDConvert(fname)
  *         if fid < 0: raise KeyError(fname)             # <<<<<<<<<<<<<<
@@ -2808,7 +2808,7 @@ static int __pyx_pf_5_cdec_11DenseVector_8__setitem__(struct __pyx_obj_5_cdec_De
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":28
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":28
  *         cdef int fid = FDConvert(fname)
  *         if fid < 0: raise KeyError(fname)
  *         if self.vector.size() <= fid:             # <<<<<<<<<<<<<<
@@ -2818,7 +2818,7 @@ static int __pyx_pf_5_cdec_11DenseVector_8__setitem__(struct __pyx_obj_5_cdec_De
   __pyx_t_1 = (__pyx_v_self->vector->size() <= __pyx_v_fid);
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":29
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":29
  *         if fid < 0: raise KeyError(fname)
  *         if self.vector.size() <= fid:
  *             self.vector.resize(fid + 1)             # <<<<<<<<<<<<<<
@@ -2830,7 +2830,7 @@ static int __pyx_pf_5_cdec_11DenseVector_8__setitem__(struct __pyx_obj_5_cdec_De
   }
   __pyx_L4:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":30
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":30
  *         if self.vector.size() <= fid:
  *             self.vector.resize(fid + 1)
  *         self.vector[0][fid] = value             # <<<<<<<<<<<<<<
@@ -2863,7 +2863,7 @@ static PyObject *__pyx_pw_5_cdec_11DenseVector_11__iter__(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":32
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":32
  *         self.vector[0][fid] = value
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -2928,7 +2928,7 @@ static PyObject *__pyx_gb_5_cdec_11DenseVector_12generator(__pyx_GeneratorObject
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":34
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":34
  *     def __iter__(self):
  *         cdef unsigned fid
  *         for fid in range(1, self.vector.size()):             # <<<<<<<<<<<<<<
@@ -2939,7 +2939,7 @@ static PyObject *__pyx_gb_5_cdec_11DenseVector_12generator(__pyx_GeneratorObject
   for (__pyx_t_2 = 1; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_fid = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":35
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":35
  *         cdef unsigned fid
  *         for fid in range(1, self.vector.size()):
  *             yield str(FDConvert(fid).c_str()), self.vector[0][fid]             # <<<<<<<<<<<<<<
@@ -3012,7 +3012,7 @@ static PyObject *__pyx_pw_5_cdec_11DenseVector_14dot(PyObject *__pyx_v_self, PyO
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":37
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":37
  *             yield str(FDConvert(fid).c_str()), self.vector[0][fid]
  * 
  *     def dot(self, SparseVector other):             # <<<<<<<<<<<<<<
@@ -3031,7 +3031,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_13dot(struct __pyx_obj_5_cdec_Den
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("dot", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":39
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":39
  *     def dot(self, SparseVector other):
  *         """vector.dot(SparseVector other) -> Dot product of the two vectors."""
  *         return other.dot(self)             # <<<<<<<<<<<<<<
@@ -3080,7 +3080,7 @@ static PyObject *__pyx_pw_5_cdec_11DenseVector_16tosparse(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":41
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":41
  *         return other.dot(self)
  * 
  *     def tosparse(self):             # <<<<<<<<<<<<<<
@@ -3098,7 +3098,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_15tosparse(struct __pyx_obj_5_cde
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("tosparse", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":43
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":43
  *     def tosparse(self):
  *         """vector.tosparse() -> Equivalent SparseVector."""
  *         cdef SparseVector sparse = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -3111,7 +3111,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_15tosparse(struct __pyx_obj_5_cde
   __pyx_v_sparse = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":44
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":44
  *         """vector.tosparse() -> Equivalent SparseVector."""
  *         cdef SparseVector sparse = SparseVector.__new__(SparseVector)
  *         sparse.vector = new FastSparseVector[weight_t]()             # <<<<<<<<<<<<<<
@@ -3120,7 +3120,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_15tosparse(struct __pyx_obj_5_cde
  */
   __pyx_v_sparse->vector = new FastSparseVector<weight_t>();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":45
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":45
  *         cdef SparseVector sparse = SparseVector.__new__(SparseVector)
  *         sparse.vector = new FastSparseVector[weight_t]()
  *         InitSparseVector(self.vector[0], sparse.vector)             # <<<<<<<<<<<<<<
@@ -3129,7 +3129,7 @@ static PyObject *__pyx_pf_5_cdec_11DenseVector_15tosparse(struct __pyx_obj_5_cde
  */
   Weights::InitSparseVector((__pyx_v_self->vector[0]), __pyx_v_sparse->vector);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":46
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":46
  *         sparse.vector = new FastSparseVector[weight_t]()
  *         InitSparseVector(self.vector[0], sparse.vector)
  *         return sparse             # <<<<<<<<<<<<<<
@@ -3172,7 +3172,7 @@ static int __pyx_pw_5_cdec_12SparseVector_1__init__(PyObject *__pyx_v_self, PyOb
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":51
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":51
  *     cdef FastSparseVector[weight_t]* vector
  * 
  *     def __init__(self):             # <<<<<<<<<<<<<<
@@ -3185,7 +3185,7 @@ static int __pyx_pf_5_cdec_12SparseVector___init__(struct __pyx_obj_5_cdec_Spars
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":53
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":53
  *     def __init__(self):
  *         """SparseVector() -> Sparse feature/weight vector."""
  *         self.vector = new FastSparseVector[weight_t]()             # <<<<<<<<<<<<<<
@@ -3208,7 +3208,7 @@ static void __pyx_pw_5_cdec_12SparseVector_3__dealloc__(PyObject *__pyx_v_self)
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":55
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":55
  *         self.vector = new FastSparseVector[weight_t]()
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -3220,7 +3220,7 @@ static void __pyx_pf_5_cdec_12SparseVector_2__dealloc__(CYTHON_UNUSED struct __p
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":56
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":56
  * 
  *     def __dealloc__(self):
  *         del self.vector             # <<<<<<<<<<<<<<
@@ -3244,7 +3244,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_5copy(PyObject *__pyx_v_self, CY
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":58
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":58
  *         del self.vector
  * 
  *     def copy(self):             # <<<<<<<<<<<<<<
@@ -3261,7 +3261,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_4copy(struct __pyx_obj_5_cdec_Sp
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("copy", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":60
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":60
  *     def copy(self):
  *         """vector.copy() -> SparseVector copy."""
  *         return self * 1             # <<<<<<<<<<<<<<
@@ -3308,7 +3308,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_7__getitem__(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":62
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":62
  *         return self * 1
  * 
  *     def __getitem__(self, char* fname):             # <<<<<<<<<<<<<<
@@ -3328,7 +3328,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_6__getitem__(struct __pyx_obj_5_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__getitem__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":63
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":63
  * 
  *     def __getitem__(self, char* fname):
  *         cdef int fid = FDConvert(fname)             # <<<<<<<<<<<<<<
@@ -3337,7 +3337,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_6__getitem__(struct __pyx_obj_5_
  */
   __pyx_v_fid = FD::Convert(__pyx_v_fname);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":64
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":64
  *     def __getitem__(self, char* fname):
  *         cdef int fid = FDConvert(fname)
  *         if fid < 0: raise KeyError(fname)             # <<<<<<<<<<<<<<
@@ -3363,7 +3363,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_6__getitem__(struct __pyx_obj_5_
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":65
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":65
  *         cdef int fid = FDConvert(fname)
  *         if fid < 0: raise KeyError(fname)
  *         return self.vector.value(fid)             # <<<<<<<<<<<<<<
@@ -3415,7 +3415,7 @@ static int __pyx_pw_5_cdec_12SparseVector_9__setitem__(PyObject *__pyx_v_self, P
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":67
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":67
  *         return self.vector.value(fid)
  * 
  *     def __setitem__(self, char* fname, float value):             # <<<<<<<<<<<<<<
@@ -3435,7 +3435,7 @@ static int __pyx_pf_5_cdec_12SparseVector_8__setitem__(struct __pyx_obj_5_cdec_S
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__setitem__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":68
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":68
  * 
  *     def __setitem__(self, char* fname, float value):
  *         cdef int fid = FDConvert(fname)             # <<<<<<<<<<<<<<
@@ -3444,7 +3444,7 @@ static int __pyx_pf_5_cdec_12SparseVector_8__setitem__(struct __pyx_obj_5_cdec_S
  */
   __pyx_v_fid = FD::Convert(__pyx_v_fname);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":69
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":69
  *     def __setitem__(self, char* fname, float value):
  *         cdef int fid = FDConvert(fname)
  *         if fid < 0: raise KeyError(fname)             # <<<<<<<<<<<<<<
@@ -3470,7 +3470,7 @@ static int __pyx_pf_5_cdec_12SparseVector_8__setitem__(struct __pyx_obj_5_cdec_S
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":70
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":70
  *         cdef int fid = FDConvert(fname)
  *         if fid < 0: raise KeyError(fname)
  *         self.vector.set_value(fid, value)             # <<<<<<<<<<<<<<
@@ -3503,7 +3503,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_11__iter__(PyObject *__pyx_v_sel
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":72
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":72
  *         self.vector.set_value(fid, value)
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -3568,7 +3568,7 @@ static PyObject *__pyx_gb_5_cdec_12SparseVector_12generator1(__pyx_GeneratorObje
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 72; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":73
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":73
  * 
  *     def __iter__(self):
  *         cdef FastSparseVector[weight_t].const_iterator* it = new FastSparseVector[weight_t].const_iterator(self.vector[0], False)             # <<<<<<<<<<<<<<
@@ -3577,7 +3577,7 @@ static PyObject *__pyx_gb_5_cdec_12SparseVector_12generator1(__pyx_GeneratorObje
  */
   __pyx_cur_scope->__pyx_v_it = new FastSparseVector<weight_t>::const_iterator((__pyx_cur_scope->__pyx_v_self->vector[0]), 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":75
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":75
  *         cdef FastSparseVector[weight_t].const_iterator* it = new FastSparseVector[weight_t].const_iterator(self.vector[0], False)
  *         cdef unsigned i
  *         try:             # <<<<<<<<<<<<<<
@@ -3586,7 +3586,7 @@ static PyObject *__pyx_gb_5_cdec_12SparseVector_12generator1(__pyx_GeneratorObje
  */
   /*try:*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":76
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":76
  *         cdef unsigned i
  *         try:
  *             for i in range(self.vector.size()):             # <<<<<<<<<<<<<<
@@ -3597,7 +3597,7 @@ static PyObject *__pyx_gb_5_cdec_12SparseVector_12generator1(__pyx_GeneratorObje
     for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
       __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":77
+      /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":77
  *         try:
  *             for i in range(self.vector.size()):
  *                 yield (str(FDConvert(it[0].ptr().first).c_str()), it[0].ptr().second)             # <<<<<<<<<<<<<<
@@ -3638,7 +3638,7 @@ static PyObject *__pyx_gb_5_cdec_12SparseVector_12generator1(__pyx_GeneratorObje
       __pyx_t_2 = __pyx_cur_scope->__pyx_t_1;
       if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L5;}
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":78
+      /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":78
  *             for i in range(self.vector.size()):
  *                 yield (str(FDConvert(it[0].ptr().first).c_str()), it[0].ptr().second)
  *                 pinc(it[0]) # ++it             # <<<<<<<<<<<<<<
@@ -3649,7 +3649,7 @@ static PyObject *__pyx_gb_5_cdec_12SparseVector_12generator1(__pyx_GeneratorObje
     }
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":80
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":80
  *                 pinc(it[0]) # ++it
  *         finally:
  *             del it             # <<<<<<<<<<<<<<
@@ -3711,7 +3711,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_14dot(PyObject *__pyx_v_self, Py
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":82
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":82
  *             del it
  * 
  *     def dot(self, other):             # <<<<<<<<<<<<<<
@@ -3730,7 +3730,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_13dot(struct __pyx_obj_5_cdec_Sp
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("dot", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":84
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":84
  *     def dot(self, other):
  *         """vector.dot(SparseVector/DenseVector other) -> Dot product of the two vectors."""
  *         if isinstance(other, DenseVector):             # <<<<<<<<<<<<<<
@@ -3740,7 +3740,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_13dot(struct __pyx_obj_5_cdec_Sp
   __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_other, ((PyObject*)__pyx_ptype_5_cdec_DenseVector)); 
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":85
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":85
  *         """vector.dot(SparseVector/DenseVector other) -> Dot product of the two vectors."""
  *         if isinstance(other, DenseVector):
  *             return self.vector.dot((<DenseVector> other).vector[0])             # <<<<<<<<<<<<<<
@@ -3756,7 +3756,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_13dot(struct __pyx_obj_5_cdec_Sp
     goto __pyx_L3;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":86
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":86
  *         if isinstance(other, DenseVector):
  *             return self.vector.dot((<DenseVector> other).vector[0])
  *         elif isinstance(other, SparseVector):             # <<<<<<<<<<<<<<
@@ -3766,7 +3766,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_13dot(struct __pyx_obj_5_cdec_Sp
   __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_other, ((PyObject*)__pyx_ptype_5_cdec_SparseVector)); 
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":87
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":87
  *             return self.vector.dot((<DenseVector> other).vector[0])
  *         elif isinstance(other, SparseVector):
  *             return self.vector.dot((<SparseVector> other).vector[0])             # <<<<<<<<<<<<<<
@@ -3783,7 +3783,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_13dot(struct __pyx_obj_5_cdec_Sp
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":88
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":88
  *         elif isinstance(other, SparseVector):
  *             return self.vector.dot((<SparseVector> other).vector[0])
  *         raise TypeError('cannot take the dot product of %s and SparseVector' % type(other))             # <<<<<<<<<<<<<<
@@ -3834,7 +3834,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_16__richcmp__(PyObject *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":90
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":90
  *         raise TypeError('cannot take the dot product of %s and SparseVector' % type(other))
  * 
  *     def __richcmp__(SparseVector x, SparseVector y, int op):             # <<<<<<<<<<<<<<
@@ -3852,7 +3852,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_15__richcmp__(struct __pyx_obj_5
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__richcmp__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":93
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":93
  *         if op == 2: # ==
  *             return x.vector[0] == y.vector[0]
  *         elif op == 3: # !=             # <<<<<<<<<<<<<<
@@ -3861,7 +3861,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_15__richcmp__(struct __pyx_obj_5
  */
   switch (__pyx_v_op) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":91
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":91
  * 
  *     def __richcmp__(SparseVector x, SparseVector y, int op):
  *         if op == 2: # ==             # <<<<<<<<<<<<<<
@@ -3870,7 +3870,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_15__richcmp__(struct __pyx_obj_5
  */
     case 2:
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":92
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":92
  *     def __richcmp__(SparseVector x, SparseVector y, int op):
  *         if op == 2: # ==
  *             return x.vector[0] == y.vector[0]             # <<<<<<<<<<<<<<
@@ -3885,7 +3885,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_15__richcmp__(struct __pyx_obj_5
     goto __pyx_L0;
     break;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":93
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":93
  *         if op == 2: # ==
  *             return x.vector[0] == y.vector[0]
  *         elif op == 3: # !=             # <<<<<<<<<<<<<<
@@ -3894,7 +3894,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_15__richcmp__(struct __pyx_obj_5
  */
     case 3:
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":94
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":94
  *             return x.vector[0] == y.vector[0]
  *         elif op == 3: # !=
  *             return not (x == y)             # <<<<<<<<<<<<<<
@@ -3913,7 +3913,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_15__richcmp__(struct __pyx_obj_5
     break;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":95
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":95
  *         elif op == 3: # !=
  *             return not (x == y)
  *         raise NotImplemented('comparison not implemented for SparseVector')             # <<<<<<<<<<<<<<
@@ -3949,7 +3949,7 @@ static Py_ssize_t __pyx_pw_5_cdec_12SparseVector_18__len__(PyObject *__pyx_v_sel
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":97
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":97
  *         raise NotImplemented('comparison not implemented for SparseVector')
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -3962,7 +3962,7 @@ static Py_ssize_t __pyx_pf_5_cdec_12SparseVector_17__len__(struct __pyx_obj_5_cd
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":98
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":98
  * 
  *     def __len__(self):
  *         return self.vector.size()             # <<<<<<<<<<<<<<
@@ -3999,7 +3999,7 @@ static int __pyx_pw_5_cdec_12SparseVector_20__contains__(PyObject *__pyx_v_self,
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":100
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":100
  *         return self.vector.size()
  * 
  *     def __contains__(self, char* fname):             # <<<<<<<<<<<<<<
@@ -4012,7 +4012,7 @@ static int __pyx_pf_5_cdec_12SparseVector_19__contains__(struct __pyx_obj_5_cdec
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__contains__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":101
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":101
  * 
  *     def __contains__(self, char* fname):
  *         return self.vector.nonzero(FDConvert(fname))             # <<<<<<<<<<<<<<
@@ -4039,7 +4039,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_22__neg__(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":103
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":103
  *         return self.vector.nonzero(FDConvert(fname))
  * 
  *     def __neg__(self):             # <<<<<<<<<<<<<<
@@ -4057,7 +4057,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_21__neg__(struct __pyx_obj_5_cde
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__neg__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":104
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":104
  * 
  *     def __neg__(self):
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -4070,7 +4070,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_21__neg__(struct __pyx_obj_5_cde
   __pyx_v_result = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":105
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":105
  *     def __neg__(self):
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](self.vector[0])             # <<<<<<<<<<<<<<
@@ -4079,7 +4079,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_21__neg__(struct __pyx_obj_5_cde
  */
   __pyx_v_result->vector = new FastSparseVector<weight_t>((__pyx_v_self->vector[0]));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":106
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":106
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](self.vector[0])
  *         result.vector[0] *= -1.0             # <<<<<<<<<<<<<<
@@ -4088,7 +4088,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_21__neg__(struct __pyx_obj_5_cde
  */
   (__pyx_v_result->vector[0]) *= -1.0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":107
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":107
  *         result.vector = new FastSparseVector[weight_t](self.vector[0])
  *         result.vector[0] *= -1.0
  *         return result             # <<<<<<<<<<<<<<
@@ -4129,7 +4129,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_24__iadd__(PyObject *__pyx_v_sel
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":109
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":109
  *         return result
  * 
  *     def __iadd__(SparseVector self, SparseVector other):             # <<<<<<<<<<<<<<
@@ -4142,7 +4142,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_23__iadd__(struct __pyx_obj_5_cd
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__iadd__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":110
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":110
  * 
  *     def __iadd__(SparseVector self, SparseVector other):
  *         self.vector[0] += other.vector[0]             # <<<<<<<<<<<<<<
@@ -4151,7 +4151,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_23__iadd__(struct __pyx_obj_5_cd
  */
   (__pyx_v_self->vector[0]) += (__pyx_v_other->vector[0]);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":111
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":111
  *     def __iadd__(SparseVector self, SparseVector other):
  *         self.vector[0] += other.vector[0]
  *         return self             # <<<<<<<<<<<<<<
@@ -4186,7 +4186,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_26__isub__(PyObject *__pyx_v_sel
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":113
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":113
  *         return self
  * 
  *     def __isub__(SparseVector self, SparseVector other):             # <<<<<<<<<<<<<<
@@ -4199,7 +4199,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_25__isub__(struct __pyx_obj_5_cd
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__isub__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":114
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":114
  * 
  *     def __isub__(SparseVector self, SparseVector other):
  *         self.vector[0] -= other.vector[0]             # <<<<<<<<<<<<<<
@@ -4208,7 +4208,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_25__isub__(struct __pyx_obj_5_cd
  */
   (__pyx_v_self->vector[0]) -= (__pyx_v_other->vector[0]);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":115
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":115
  *     def __isub__(SparseVector self, SparseVector other):
  *         self.vector[0] -= other.vector[0]
  *         return self             # <<<<<<<<<<<<<<
@@ -4248,7 +4248,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_28__imul__(PyObject *__pyx_v_sel
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":117
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":117
  *         return self
  * 
  *     def __imul__(SparseVector self, float scalar):             # <<<<<<<<<<<<<<
@@ -4261,7 +4261,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_27__imul__(struct __pyx_obj_5_cd
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   __Pyx_RefNannySetupContext("__imul__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":118
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":118
  * 
  *     def __imul__(SparseVector self, float scalar):
  *         self.vector[0] *= scalar             # <<<<<<<<<<<<<<
@@ -4270,7 +4270,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_27__imul__(struct __pyx_obj_5_cd
  */
   (__pyx_v_self->vector[0]) *= __pyx_v_scalar;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":119
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":119
  *     def __imul__(SparseVector self, float scalar):
  *         self.vector[0] *= scalar
  *         return self             # <<<<<<<<<<<<<<
@@ -4312,7 +4312,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_30__idiv__(PyObject *__pyx_v_sel
 }
 #endif /*!(#if PY_MAJOR_VERSION < 3)*/
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":121
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":121
  *         return self
  * 
  *     def __idiv__(SparseVector self, float scalar):             # <<<<<<<<<<<<<<
@@ -4326,7 +4326,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_29__idiv__(struct __pyx_obj_5_cd
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   __Pyx_RefNannySetupContext("__idiv__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":122
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":122
  * 
  *     def __idiv__(SparseVector self, float scalar):
  *         self.vector[0] /= scalar             # <<<<<<<<<<<<<<
@@ -4335,7 +4335,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_29__idiv__(struct __pyx_obj_5_cd
  */
   (__pyx_v_self->vector[0]) /= __pyx_v_scalar;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":123
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":123
  *     def __idiv__(SparseVector self, float scalar):
  *         self.vector[0] /= scalar
  *         return self             # <<<<<<<<<<<<<<
@@ -4372,7 +4372,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_32__add__(PyObject *__pyx_v_x, P
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":125
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":125
  *         return self
  * 
  *     def __add__(SparseVector x, SparseVector y):             # <<<<<<<<<<<<<<
@@ -4390,7 +4390,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_31__add__(struct __pyx_obj_5_cde
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   __Pyx_RefNannySetupContext("__add__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":126
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":126
  * 
  *     def __add__(SparseVector x, SparseVector y):
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -4403,7 +4403,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_31__add__(struct __pyx_obj_5_cde
   __pyx_v_result = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":127
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":127
  *     def __add__(SparseVector x, SparseVector y):
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](x.vector[0] + y.vector[0])             # <<<<<<<<<<<<<<
@@ -4412,7 +4412,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_31__add__(struct __pyx_obj_5_cde
  */
   __pyx_v_result->vector = new FastSparseVector<weight_t>(((__pyx_v_x->vector[0]) + (__pyx_v_y->vector[0])));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":128
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":128
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](x.vector[0] + y.vector[0])
  *         return result             # <<<<<<<<<<<<<<
@@ -4454,7 +4454,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_34__sub__(PyObject *__pyx_v_x, P
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":130
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":130
  *         return result
  * 
  *     def __sub__(SparseVector x, SparseVector y):             # <<<<<<<<<<<<<<
@@ -4472,7 +4472,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_33__sub__(struct __pyx_obj_5_cde
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   __Pyx_RefNannySetupContext("__sub__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":131
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":131
  * 
  *     def __sub__(SparseVector x, SparseVector y):
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -4485,7 +4485,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_33__sub__(struct __pyx_obj_5_cde
   __pyx_v_result = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":132
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":132
  *     def __sub__(SparseVector x, SparseVector y):
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](x.vector[0] - y.vector[0])             # <<<<<<<<<<<<<<
@@ -4494,7 +4494,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_33__sub__(struct __pyx_obj_5_cde
  */
   __pyx_v_result->vector = new FastSparseVector<weight_t>(((__pyx_v_x->vector[0]) - (__pyx_v_y->vector[0])));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":133
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":133
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](x.vector[0] - y.vector[0])
  *         return result             # <<<<<<<<<<<<<<
@@ -4530,7 +4530,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_36__mul__(PyObject *__pyx_v_x, P
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":135
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":135
  *         return result
  * 
  *     def __mul__(x, y):             # <<<<<<<<<<<<<<
@@ -4552,7 +4552,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_35__mul__(PyObject *__pyx_v_x, P
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__mul__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":138
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":138
  *         cdef SparseVector vector
  *         cdef float scalar
  *         if isinstance(x, SparseVector): vector, scalar = x, y             # <<<<<<<<<<<<<<
@@ -4572,7 +4572,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_35__mul__(PyObject *__pyx_v_x, P
   }
   /*else*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":139
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":139
  *         cdef float scalar
  *         if isinstance(x, SparseVector): vector, scalar = x, y
  *         else: vector, scalar = y, x             # <<<<<<<<<<<<<<
@@ -4589,7 +4589,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_35__mul__(PyObject *__pyx_v_x, P
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":140
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":140
  *         if isinstance(x, SparseVector): vector, scalar = x, y
  *         else: vector, scalar = y, x
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -4602,7 +4602,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_35__mul__(PyObject *__pyx_v_x, P
   __pyx_v_result = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":141
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":141
  *         else: vector, scalar = y, x
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](vector.vector[0] * scalar)             # <<<<<<<<<<<<<<
@@ -4611,7 +4611,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_35__mul__(PyObject *__pyx_v_x, P
  */
   __pyx_v_result->vector = new FastSparseVector<weight_t>(((__pyx_v_vector->vector[0]) * __pyx_v_scalar));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":142
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":142
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](vector.vector[0] * scalar)
  *         return result             # <<<<<<<<<<<<<<
@@ -4650,7 +4650,7 @@ static PyObject *__pyx_pw_5_cdec_12SparseVector_38__div__(PyObject *__pyx_v_x, P
 }
 #endif /*!(#if PY_MAJOR_VERSION < 3)*/
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":144
+/* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":144
  *         return result
  * 
  *     def __div__(x, y):             # <<<<<<<<<<<<<<
@@ -4673,7 +4673,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_37__div__(PyObject *__pyx_v_x, P
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__div__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":147
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":147
  *         cdef SparseVector vector
  *         cdef float scalar
  *         if isinstance(x, SparseVector): vector, scalar = x, y             # <<<<<<<<<<<<<<
@@ -4693,7 +4693,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_37__div__(PyObject *__pyx_v_x, P
   }
   /*else*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":148
+    /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":148
  *         cdef float scalar
  *         if isinstance(x, SparseVector): vector, scalar = x, y
  *         else: vector, scalar = y, x             # <<<<<<<<<<<<<<
@@ -4710,7 +4710,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_37__div__(PyObject *__pyx_v_x, P
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":149
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":149
  *         if isinstance(x, SparseVector): vector, scalar = x, y
  *         else: vector, scalar = y, x
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -4723,7 +4723,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_37__div__(PyObject *__pyx_v_x, P
   __pyx_v_result = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":150
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":150
  *         else: vector, scalar = y, x
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](vector.vector[0] / scalar)             # <<<<<<<<<<<<<<
@@ -4731,7 +4731,7 @@ static PyObject *__pyx_pf_5_cdec_12SparseVector_37__div__(PyObject *__pyx_v_x, P
  */
   __pyx_v_result->vector = new FastSparseVector<weight_t>(((__pyx_v_vector->vector[0]) / __pyx_v_scalar));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":151
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":151
  *         cdef SparseVector result = SparseVector.__new__(SparseVector)
  *         result.vector = new FastSparseVector[weight_t](vector.vector[0] / scalar)
  *         return result             # <<<<<<<<<<<<<<
@@ -4769,7 +4769,7 @@ static PyObject *__pyx_pw_5_cdec_1_phrase(PyObject *__pyx_self, PyObject *__pyx_
 }
 static PyObject *__pyx_gb_5_cdec_7_phrase_2generator18(__pyx_GeneratorObject *__pyx_generator, PyObject *__pyx_sent_value); /* proto */
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":6
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":6
  * 
  * def _phrase(phrase):
  *     return ' '.join(w.encode('utf8') if isinstance(w, unicode) else str(w) for w in phrase)             # <<<<<<<<<<<<<<
@@ -4932,7 +4932,7 @@ static PyObject *__pyx_gb_5_cdec_7_phrase_2generator18(__pyx_GeneratorObject *__
   return NULL;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":5
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":5
  * import cdec.sa._sa as _sa
  * 
  * def _phrase(phrase):             # <<<<<<<<<<<<<<
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   __Pyx_INCREF(__pyx_cur_scope->__pyx_v_phrase);
   __Pyx_GIVEREF(__pyx_cur_scope->__pyx_v_phrase);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":6
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":6
  * 
  * def _phrase(phrase):
  *     return ' '.join(w.encode('utf8') if isinstance(w, unicode) else str(w) for w in phrase)             # <<<<<<<<<<<<<<
@@ -5072,7 +5072,7 @@ static int __pyx_pw_5_cdec_2NT_1__init__(PyObject *__pyx_v_self, PyObject *__pyx
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":11
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":11
  *     cdef public bytes cat
  *     cdef public unsigned ref
  *     def __init__(self, bytes cat, unsigned ref=0):             # <<<<<<<<<<<<<<
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   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":13
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":13
  *     def __init__(self, bytes cat, unsigned ref=0):
  *         """NT(bytes cat, int ref=0) -> Non-terminal from category `cat`."""
  *         self.cat = cat             # <<<<<<<<<<<<<<
@@ -5098,7 +5098,7 @@ static int __pyx_pf_5_cdec_2NT___init__(struct __pyx_obj_5_cdec_NT *__pyx_v_self
   __Pyx_DECREF(((PyObject *)__pyx_v_self->cat));
   __pyx_v_self->cat = __pyx_v_cat;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":14
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":14
  *         """NT(bytes cat, int ref=0) -> Non-terminal from category `cat`."""
  *         self.cat = cat
  *         self.ref = ref             # <<<<<<<<<<<<<<
@@ -5123,7 +5123,7 @@ static PyObject *__pyx_pw_5_cdec_2NT_3__str__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":16
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":16
  *         self.ref = ref
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -5142,7 +5142,7 @@ static PyObject *__pyx_pf_5_cdec_2NT_2__str__(struct __pyx_obj_5_cdec_NT *__pyx_
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-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":17
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":17
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  *     def __str__(self):
  *         if self.ref > 0:             # <<<<<<<<<<<<<<
@@ -5152,7 +5152,7 @@ static PyObject *__pyx_pf_5_cdec_2NT_2__str__(struct __pyx_obj_5_cdec_NT *__pyx_
   __pyx_t_1 = (__pyx_v_self->ref > 0);
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":18
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":18
  *     def __str__(self):
  *         if self.ref > 0:
  *             return '[%s,%d]' % (self.cat, self.ref)             # <<<<<<<<<<<<<<
@@ -5180,7 +5180,7 @@ static PyObject *__pyx_pf_5_cdec_2NT_2__str__(struct __pyx_obj_5_cdec_NT *__pyx_
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":19
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":19
  *         if self.ref > 0:
  *             return '[%s,%d]' % (self.cat, self.ref)
  *         return '[%s]' % self.cat             # <<<<<<<<<<<<<<
@@ -5218,7 +5218,7 @@ static PyObject *__pyx_pw_5_cdec_2NT_3cat_1__get__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":9
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":9
  * 
  * cdef class NT:
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   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":10
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":10
  * cdef class NT:
  *     cdef public bytes cat
  *     cdef public unsigned ref             # <<<<<<<<<<<<<<
@@ -5432,7 +5432,7 @@ static int __pyx_pw_5_cdec_5NTRef_1__init__(PyObject *__pyx_v_self, PyObject *__
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":23
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":23
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  *     cdef public unsigned ref
  *     def __init__(self, unsigned ref):             # <<<<<<<<<<<<<<
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   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":25
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":25
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  *         """NTRef(int ref) -> Non-terminal reference."""
  *         self.ref = ref             # <<<<<<<<<<<<<<
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   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":27
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":27
  *         self.ref = ref
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -5488,7 +5488,7 @@ static PyObject *__pyx_pf_5_cdec_5NTRef_2__str__(struct __pyx_obj_5_cdec_NTRef *
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__str__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":28
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":28
  * 
  *     def __str__(self):
  *         return '[%d]' % self.ref             # <<<<<<<<<<<<<<
@@ -5529,7 +5529,7 @@ static PyObject *__pyx_pw_5_cdec_5NTRef_3ref_1__get__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":22
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":22
  * 
  * cdef class NTRef:
  *     cdef public unsigned ref             # <<<<<<<<<<<<<<
@@ -5596,7 +5596,7 @@ static int __pyx_pf_5_cdec_5NTRef_3ref_2__set__(struct __pyx_obj_5_cdec_NTRef *_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":30
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":30
  *         return '[%d]' % self.ref
  * 
  * cdef TRule convert_rule(_sa.Rule rule):             # <<<<<<<<<<<<<<
@@ -5627,7 +5627,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("convert_rule", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":31
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":31
  * 
  * cdef TRule convert_rule(_sa.Rule rule):
  *     lhs = _sa.sym_tocat(rule.lhs)             # <<<<<<<<<<<<<<
@@ -5636,7 +5636,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
  */
   __pyx_v_lhs = __pyx_f_4cdec_2sa_3_sa_sym_tocat(__pyx_v_rule->lhs);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":32
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":32
  * cdef TRule convert_rule(_sa.Rule rule):
  *     lhs = _sa.sym_tocat(rule.lhs)
  *     scores = dict(rule.scores)             # <<<<<<<<<<<<<<
@@ -5654,7 +5654,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   __pyx_v_scores = ((PyObject*)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":33
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":33
  *     lhs = _sa.sym_tocat(rule.lhs)
  *     scores = dict(rule.scores)
  *     f, e = [], []             # <<<<<<<<<<<<<<
@@ -5670,7 +5670,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   __pyx_v_e = ((PyObject*)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":34
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":34
  *     scores = dict(rule.scores)
  *     f, e = [], []
  *     cdef int* fsyms = rule.f.syms             # <<<<<<<<<<<<<<
@@ -5680,7 +5680,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   __pyx_t_3 = __pyx_v_rule->f->syms;
   __pyx_v_fsyms = __pyx_t_3;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":35
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":35
  *     f, e = [], []
  *     cdef int* fsyms = rule.f.syms
  *     for i in range(rule.f.n):             # <<<<<<<<<<<<<<
@@ -5691,7 +5691,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
     __pyx_v_i = __pyx_t_5;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":36
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":36
  *     cdef int* fsyms = rule.f.syms
  *     for i in range(rule.f.n):
  *         if _sa.sym_isvar(fsyms[i]):             # <<<<<<<<<<<<<<
@@ -5701,7 +5701,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
     __pyx_t_6 = __pyx_f_4cdec_2sa_3_sa_sym_isvar((__pyx_v_fsyms[__pyx_v_i]));
     if (__pyx_t_6) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":37
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":37
  *     for i in range(rule.f.n):
  *         if _sa.sym_isvar(fsyms[i]):
  *             f.append(NT(_sa.sym_tocat(fsyms[i])))             # <<<<<<<<<<<<<<
@@ -5724,7 +5724,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
     }
     /*else*/ {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":39
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":39
  *             f.append(NT(_sa.sym_tocat(fsyms[i])))
  *         else:
  *             f.append(_sa.sym_tostring(fsyms[i]))             # <<<<<<<<<<<<<<
@@ -5739,7 +5739,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
     __pyx_L5:;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":40
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":40
  *         else:
  *             f.append(_sa.sym_tostring(fsyms[i]))
  *     cdef int* esyms = rule.e.syms             # <<<<<<<<<<<<<<
@@ -5749,7 +5749,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   __pyx_t_3 = __pyx_v_rule->e->syms;
   __pyx_v_esyms = __pyx_t_3;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":41
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":41
  *             f.append(_sa.sym_tostring(fsyms[i]))
  *     cdef int* esyms = rule.e.syms
  *     for i in range(rule.e.n):             # <<<<<<<<<<<<<<
@@ -5760,7 +5760,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
     __pyx_v_i = __pyx_t_5;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":42
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":42
  *     cdef int* esyms = rule.e.syms
  *     for i in range(rule.e.n):
  *         if _sa.sym_isvar(esyms[i]):             # <<<<<<<<<<<<<<
@@ -5770,7 +5770,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
     __pyx_t_6 = __pyx_f_4cdec_2sa_3_sa_sym_isvar((__pyx_v_esyms[__pyx_v_i]));
     if (__pyx_t_6) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":43
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":43
  *     for i in range(rule.e.n):
  *         if _sa.sym_isvar(esyms[i]):
  *             e.append(NTRef(_sa.sym_getindex(esyms[i])))             # <<<<<<<<<<<<<<
@@ -5793,7 +5793,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
     }
     /*else*/ {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":45
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":45
  *             e.append(NTRef(_sa.sym_getindex(esyms[i])))
  *         else:
  *             e.append(_sa.sym_tostring(esyms[i]))             # <<<<<<<<<<<<<<
@@ -5808,7 +5808,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
     __pyx_L8:;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":46
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":46
  *         else:
  *             e.append(_sa.sym_tostring(esyms[i]))
  *     a = list(rule.alignments())             # <<<<<<<<<<<<<<
@@ -5831,7 +5831,7 @@ static struct __pyx_obj_5_cdec_TRule *__pyx_f_5_cdec_convert_rule(struct __pyx_o
   __pyx_v_a = ((PyObject*)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":47
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":47
  *             e.append(_sa.sym_tostring(esyms[i]))
  *     a = list(rule.alignments())
  *     return TRule(lhs, f, e, scores, a)             # <<<<<<<<<<<<<<
@@ -5901,7 +5901,7 @@ static int __pyx_pw_5_cdec_5TRule_1__init__(PyObject *__pyx_v_self, PyObject *__
     static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__lhs,&__pyx_n_s__f,&__pyx_n_s__e,&__pyx_n_s__scores,&__pyx_n_s__a,0};
     PyObject* values[5] = {0,0,0,0,0};
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":52
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":52
  *     cdef shared_ptr[grammar.TRule]* rule
  * 
  *     def __init__(self, lhs, f, e, scores, a=None):             # <<<<<<<<<<<<<<
@@ -5990,7 +5990,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":59
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":59
  *         scores: dictionary of feature scores
  *         a: optional list of alignment points"""
  *         self.rule = new shared_ptr[grammar.TRule](new grammar.TRule())             # <<<<<<<<<<<<<<
@@ -6005,7 +6005,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
   }
   __pyx_v_self->rule = new boost::shared_ptr<TRule>(__pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":60
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":60
  *         a: optional list of alignment points"""
  *         self.rule = new shared_ptr[grammar.TRule](new grammar.TRule())
  *         self.lhs = lhs             # <<<<<<<<<<<<<<
@@ -6014,7 +6014,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
  */
   if (PyObject_SetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__lhs, __pyx_v_lhs) < 0) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":61
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":61
  *         self.rule = new shared_ptr[grammar.TRule](new grammar.TRule())
  *         self.lhs = lhs
  *         self.e = e             # <<<<<<<<<<<<<<
@@ -6023,7 +6023,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
  */
   if (PyObject_SetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__e, __pyx_v_e) < 0) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 61; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":62
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":62
  *         self.lhs = lhs
  *         self.e = e
  *         self.f = f             # <<<<<<<<<<<<<<
@@ -6032,7 +6032,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
  */
   if (PyObject_SetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__f, __pyx_v_f) < 0) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 62; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":63
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":63
  *         self.e = e
  *         self.f = f
  *         self.scores = scores             # <<<<<<<<<<<<<<
@@ -6041,7 +6041,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
  */
   if (PyObject_SetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__scores, __pyx_v_scores) < 0) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 63; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":64
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":64
  *         self.f = f
  *         self.scores = scores
  *         if a:             # <<<<<<<<<<<<<<
@@ -6051,7 +6051,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_a); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":65
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":65
  *         self.scores = scores
  *         if a:
  *             self.a = a             # <<<<<<<<<<<<<<
@@ -6063,7 +6063,7 @@ static int __pyx_pf_5_cdec_5TRule___init__(struct __pyx_obj_5_cdec_TRule *__pyx_
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":66
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":66
  *         if a:
  *             self.a = a
  *         self.rule.get().ComputeArity()             # <<<<<<<<<<<<<<
@@ -6091,7 +6091,7 @@ static void __pyx_pw_5_cdec_5TRule_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":68
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":68
  *         self.rule.get().ComputeArity()
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -6103,7 +6103,7 @@ static void __pyx_pf_5_cdec_5TRule_2__dealloc__(CYTHON_UNUSED struct __pyx_obj_5
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":69
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":69
  * 
  *     def __dealloc__(self):
  *         del self.rule             # <<<<<<<<<<<<<<
@@ -6126,7 +6126,7 @@ static PyObject *__pyx_pw_5_cdec_5TRule_5arity_1__get__(PyObject *__pyx_v_self)
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":72
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":72
  * 
  *     property arity:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -6143,7 +6143,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_5arity___get__(struct __pyx_obj_5_cdec_T
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":73
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":73
  *     property arity:
  *         def __get__(self):
  *             return self.rule.get().arity_             # <<<<<<<<<<<<<<
@@ -6180,7 +6180,7 @@ static PyObject *__pyx_pw_5_cdec_5TRule_1f_1__get__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":76
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":76
  * 
  *     property f:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -6207,7 +6207,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":77
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":77
  *     property f:
  *         def __get__(self):
  *             cdef vector[WordID]* f_ = &self.rule.get().f_             # <<<<<<<<<<<<<<
@@ -6216,7 +6216,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
  */
   __pyx_v_f_ = (&__pyx_v_self->rule->get()->f_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":79
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":79
  *             cdef vector[WordID]* f_ = &self.rule.get().f_
  *             cdef WordID w
  *             cdef f = []             # <<<<<<<<<<<<<<
@@ -6228,7 +6228,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
   __pyx_v_f = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":81
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":81
  *             cdef f = []
  *             cdef unsigned i
  *             cdef int idx = 0             # <<<<<<<<<<<<<<
@@ -6237,7 +6237,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
  */
   __pyx_v_idx = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":82
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":82
  *             cdef unsigned i
  *             cdef int idx = 0
  *             for i in range(f_.size()):             # <<<<<<<<<<<<<<
@@ -6248,7 +6248,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
     __pyx_v_i = __pyx_t_3;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":83
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":83
  *             cdef int idx = 0
  *             for i in range(f_.size()):
  *                 w = f_[0][i]             # <<<<<<<<<<<<<<
@@ -6257,7 +6257,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
  */
     __pyx_v_w = ((__pyx_v_f_[0])[__pyx_v_i]);
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":84
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":84
  *             for i in range(f_.size()):
  *                 w = f_[0][i]
  *                 if w < 0:             # <<<<<<<<<<<<<<
@@ -6267,7 +6267,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
     __pyx_t_4 = (__pyx_v_w < 0);
     if (__pyx_t_4) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":85
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":85
  *                 w = f_[0][i]
  *                 if w < 0:
  *                     idx += 1             # <<<<<<<<<<<<<<
@@ -6276,7 +6276,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
  */
       __pyx_v_idx = (__pyx_v_idx + 1);
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":86
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":86
  *                 if w < 0:
  *                     idx += 1
  *                     f.append(NT(TDConvert(-w).c_str(), idx))             # <<<<<<<<<<<<<<
@@ -6306,7 +6306,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
     }
     /*else*/ {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":88
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":88
  *                     f.append(NT(TDConvert(-w).c_str(), idx))
  *                 else:
  *                     f.append(unicode(TDConvert(w).c_str(), encoding='utf8'))             # <<<<<<<<<<<<<<
@@ -6335,7 +6335,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1f___get__(struct __pyx_obj_5_cdec_TRule
     __pyx_L5:;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":89
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":89
  *                 else:
  *                     f.append(unicode(TDConvert(w).c_str(), encoding='utf8'))
  *             return f             # <<<<<<<<<<<<<<
@@ -6373,7 +6373,7 @@ static int __pyx_pw_5_cdec_5TRule_1f_3__set__(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":91
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":91
  *             return f
  * 
  *         def __set__(self, f):             # <<<<<<<<<<<<<<
@@ -6399,7 +6399,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__set__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":92
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":92
  * 
  *         def __set__(self, f):
  *             cdef vector[WordID]* f_ = &self.rule.get().f_             # <<<<<<<<<<<<<<
@@ -6408,7 +6408,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
  */
   __pyx_v_f_ = (&__pyx_v_self->rule->get()->f_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":93
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":93
  *         def __set__(self, f):
  *             cdef vector[WordID]* f_ = &self.rule.get().f_
  *             f_.resize(len(f))             # <<<<<<<<<<<<<<
@@ -6418,7 +6418,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
   __pyx_t_1 = PyObject_Length(__pyx_v_f); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 93; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_f_->resize(__pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":95
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":95
  *             f_.resize(len(f))
  *             cdef unsigned i
  *             cdef int idx = 0             # <<<<<<<<<<<<<<
@@ -6427,7 +6427,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
  */
   __pyx_v_idx = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":96
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":96
  *             cdef unsigned i
  *             cdef int idx = 0
  *             for i in range(len(f)):             # <<<<<<<<<<<<<<
@@ -6438,7 +6438,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":97
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":97
  *             cdef int idx = 0
  *             for i in range(len(f)):
  *                 if isinstance(f[i], NT):             # <<<<<<<<<<<<<<
@@ -6451,7 +6451,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
     if (__pyx_t_4) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":98
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":98
  *             for i in range(len(f)):
  *                 if isinstance(f[i], NT):
  *                     f_[0][i] = -TDConvert((<NT> f[i]).cat)             # <<<<<<<<<<<<<<
@@ -6467,7 +6467,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
     }
     /*else*/ {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":100
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":100
  *                     f_[0][i] = -TDConvert((<NT> f[i]).cat)
  *                 else:
  *                     fi = as_str(f[i])             # <<<<<<<<<<<<<<
@@ -6483,7 +6483,7 @@ static int __pyx_pf_5_cdec_5TRule_1f_2__set__(struct __pyx_obj_5_cdec_TRule *__p
       __pyx_v_fi = ((PyObject*)__pyx_t_6);
       __pyx_t_6 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":101
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":101
  *                 else:
  *                     fi = as_str(f[i])
  *                     f_[0][i] = TDConvert(fi)             # <<<<<<<<<<<<<<
@@ -6520,7 +6520,7 @@ static PyObject *__pyx_pw_5_cdec_5TRule_1e_1__get__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":104
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":104
  * 
  *     property e:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -6547,7 +6547,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":105
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":105
  *     property e:
  *         def __get__(self):
  *             cdef vector[WordID]* e_ = &self.rule.get().e_             # <<<<<<<<<<<<<<
@@ -6556,7 +6556,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
  */
   __pyx_v_e_ = (&__pyx_v_self->rule->get()->e_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":107
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":107
  *             cdef vector[WordID]* e_ = &self.rule.get().e_
  *             cdef WordID w
  *             cdef e = []             # <<<<<<<<<<<<<<
@@ -6568,7 +6568,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
   __pyx_v_e = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":109
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":109
  *             cdef e = []
  *             cdef unsigned i
  *             cdef int idx = 0             # <<<<<<<<<<<<<<
@@ -6577,7 +6577,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
  */
   __pyx_v_idx = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":110
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":110
  *             cdef unsigned i
  *             cdef int idx = 0
  *             for i in range(e_.size()):             # <<<<<<<<<<<<<<
@@ -6588,7 +6588,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
     __pyx_v_i = __pyx_t_3;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":111
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":111
  *             cdef int idx = 0
  *             for i in range(e_.size()):
  *                 w = e_[0][i]             # <<<<<<<<<<<<<<
@@ -6597,7 +6597,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
  */
     __pyx_v_w = ((__pyx_v_e_[0])[__pyx_v_i]);
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":112
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":112
  *             for i in range(e_.size()):
  *                 w = e_[0][i]
  *                 if w < 1:             # <<<<<<<<<<<<<<
@@ -6607,7 +6607,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
     __pyx_t_4 = (__pyx_v_w < 1);
     if (__pyx_t_4) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":113
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":113
  *                 w = e_[0][i]
  *                 if w < 1:
  *                     idx += 1             # <<<<<<<<<<<<<<
@@ -6616,7 +6616,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
  */
       __pyx_v_idx = (__pyx_v_idx + 1);
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":114
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":114
  *                 if w < 1:
  *                     idx += 1
  *                     e.append(NTRef(1-w))             # <<<<<<<<<<<<<<
@@ -6641,7 +6641,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
     }
     /*else*/ {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":116
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":116
  *                     e.append(NTRef(1-w))
  *                 else:
  *                     e.append(unicode(TDConvert(w).c_str(), encoding='utf8'))             # <<<<<<<<<<<<<<
@@ -6670,7 +6670,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_1e___get__(struct __pyx_obj_5_cdec_TRule
     __pyx_L5:;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":117
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":117
  *                 else:
  *                     e.append(unicode(TDConvert(w).c_str(), encoding='utf8'))
  *             return e             # <<<<<<<<<<<<<<
@@ -6708,7 +6708,7 @@ static int __pyx_pw_5_cdec_5TRule_1e_3__set__(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":119
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":119
  *             return e
  * 
  *         def __set__(self, e):             # <<<<<<<<<<<<<<
@@ -6734,7 +6734,7 @@ static int __pyx_pf_5_cdec_5TRule_1e_2__set__(struct __pyx_obj_5_cdec_TRule *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__set__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":120
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":120
  * 
  *         def __set__(self, e):
  *             cdef vector[WordID]* e_ = &self.rule.get().e_             # <<<<<<<<<<<<<<
@@ -6743,7 +6743,7 @@ static int __pyx_pf_5_cdec_5TRule_1e_2__set__(struct __pyx_obj_5_cdec_TRule *__p
  */
   __pyx_v_e_ = (&__pyx_v_self->rule->get()->e_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":121
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":121
  *         def __set__(self, e):
  *             cdef vector[WordID]* e_ = &self.rule.get().e_
  *             e_.resize(len(e))             # <<<<<<<<<<<<<<
@@ -6753,7 +6753,7 @@ static int __pyx_pf_5_cdec_5TRule_1e_2__set__(struct __pyx_obj_5_cdec_TRule *__p
   __pyx_t_1 = PyObject_Length(__pyx_v_e); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 121; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_e_->resize(__pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":123
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":123
  *             e_.resize(len(e))
  *             cdef unsigned i
  *             for i in range(len(e)):             # <<<<<<<<<<<<<<
@@ -6764,7 +6764,7 @@ static int __pyx_pf_5_cdec_5TRule_1e_2__set__(struct __pyx_obj_5_cdec_TRule *__p
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":124
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":124
  *             cdef unsigned i
  *             for i in range(len(e)):
  *                 if isinstance(e[i], NTRef):             # <<<<<<<<<<<<<<
@@ -6777,7 +6777,7 @@ static int __pyx_pf_5_cdec_5TRule_1e_2__set__(struct __pyx_obj_5_cdec_TRule *__p
     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
     if (__pyx_t_4) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":125
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":125
  *             for i in range(len(e)):
  *                 if isinstance(e[i], NTRef):
  *                     e_[0][i] = 1-e[i].ref             # <<<<<<<<<<<<<<
@@ -6799,7 +6799,7 @@ static int __pyx_pf_5_cdec_5TRule_1e_2__set__(struct __pyx_obj_5_cdec_TRule *__p
     }
     /*else*/ {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":127
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":127
  *                     e_[0][i] = 1-e[i].ref
  *                 else:
  *                     ei = as_str(e[i])             # <<<<<<<<<<<<<<
@@ -6815,7 +6815,7 @@ static int __pyx_pf_5_cdec_5TRule_1e_2__set__(struct __pyx_obj_5_cdec_TRule *__p
       __pyx_v_ei = ((PyObject*)__pyx_t_5);
       __pyx_t_5 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":128
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":128
  *                 else:
  *                     ei = as_str(e[i])
  *                     e_[0][i] = TDConvert(ei)             # <<<<<<<<<<<<<<
@@ -6853,7 +6853,7 @@ static PyObject *__pyx_pw_5_cdec_5TRule_1a_1__get__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":131
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":131
  * 
  *     property a:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -6918,7 +6918,7 @@ static PyObject *__pyx_gb_5_cdec_5TRule_1a_2generator2(__pyx_GeneratorObject *__
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":133
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":133
  *         def __get__(self):
  *             cdef unsigned i
  *             cdef vector[grammar.AlignmentPoint]* a = &self.rule.get().a_             # <<<<<<<<<<<<<<
@@ -6927,7 +6927,7 @@ static PyObject *__pyx_gb_5_cdec_5TRule_1a_2generator2(__pyx_GeneratorObject *__
  */
   __pyx_cur_scope->__pyx_v_a = (&__pyx_cur_scope->__pyx_v_self->rule->get()->a_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":134
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":134
  *             cdef unsigned i
  *             cdef vector[grammar.AlignmentPoint]* a = &self.rule.get().a_
  *             for i in range(a.size()):             # <<<<<<<<<<<<<<
@@ -6938,7 +6938,7 @@ static PyObject *__pyx_gb_5_cdec_5TRule_1a_2generator2(__pyx_GeneratorObject *__
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":135
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":135
  *             cdef vector[grammar.AlignmentPoint]* a = &self.rule.get().a_
  *             for i in range(a.size()):
  *                 yield (a[0][i].s_, a[0][i].t_)             # <<<<<<<<<<<<<<
@@ -6997,7 +6997,7 @@ static int __pyx_pw_5_cdec_5TRule_1a_4__set__(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":137
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":137
  *                 yield (a[0][i].s_, a[0][i].t_)
  * 
  *         def __set__(self, a):             # <<<<<<<<<<<<<<
@@ -7026,7 +7026,7 @@ static int __pyx_pf_5_cdec_5TRule_1a_3__set__(struct __pyx_obj_5_cdec_TRule *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__set__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":138
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":138
  * 
  *         def __set__(self, a):
  *             cdef vector[grammar.AlignmentPoint]* a_ = &self.rule.get().a_             # <<<<<<<<<<<<<<
@@ -7035,7 +7035,7 @@ static int __pyx_pf_5_cdec_5TRule_1a_3__set__(struct __pyx_obj_5_cdec_TRule *__p
  */
   __pyx_v_a_ = (&__pyx_v_self->rule->get()->a_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":139
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":139
  *         def __set__(self, a):
  *             cdef vector[grammar.AlignmentPoint]* a_ = &self.rule.get().a_
  *             a_.resize(len(a))             # <<<<<<<<<<<<<<
@@ -7045,7 +7045,7 @@ static int __pyx_pf_5_cdec_5TRule_1a_3__set__(struct __pyx_obj_5_cdec_TRule *__p
   __pyx_t_1 = PyObject_Length(__pyx_v_a); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 139; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_a_->resize(__pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":142
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":142
  *             cdef unsigned i
  *             cdef int s, t
  *             for i in range(len(a)):             # <<<<<<<<<<<<<<
@@ -7056,7 +7056,7 @@ static int __pyx_pf_5_cdec_5TRule_1a_3__set__(struct __pyx_obj_5_cdec_TRule *__p
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":143
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":143
  *             cdef int s, t
  *             for i in range(len(a)):
  *                 s, t = a[i]             # <<<<<<<<<<<<<<
@@ -7123,7 +7123,7 @@ static int __pyx_pf_5_cdec_5TRule_1a_3__set__(struct __pyx_obj_5_cdec_TRule *__p
     __pyx_v_s = __pyx_t_8;
     __pyx_v_t = __pyx_t_9;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":144
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":144
  *             for i in range(len(a)):
  *                 s, t = a[i]
  *                 a_[0][i] = grammar.AlignmentPoint(s, t)             # <<<<<<<<<<<<<<
@@ -7158,7 +7158,7 @@ static PyObject *__pyx_pw_5_cdec_5TRule_6scores_1__get__(PyObject *__pyx_v_self)
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":147
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":147
  * 
  *     property scores:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -7176,7 +7176,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_6scores___get__(struct __pyx_obj_5_cdec_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":148
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":148
  *     property scores:
  *         def __get__(self):
  *             cdef SparseVector scores = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -7189,7 +7189,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_6scores___get__(struct __pyx_obj_5_cdec_
   __pyx_v_scores = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":149
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":149
  *         def __get__(self):
  *             cdef SparseVector scores = SparseVector.__new__(SparseVector)
  *             scores.vector = new FastSparseVector[double](self.rule.get().scores_)             # <<<<<<<<<<<<<<
@@ -7198,7 +7198,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_6scores___get__(struct __pyx_obj_5_cdec_
  */
   __pyx_v_scores->vector = new FastSparseVector<double>(__pyx_v_self->rule->get()->scores_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":150
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":150
  *             cdef SparseVector scores = SparseVector.__new__(SparseVector)
  *             scores.vector = new FastSparseVector[double](self.rule.get().scores_)
  *             return scores             # <<<<<<<<<<<<<<
@@ -7234,7 +7234,7 @@ static int __pyx_pw_5_cdec_5TRule_6scores_3__set__(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":152
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":152
  *             return scores
  * 
  *         def __set__(self, scores):             # <<<<<<<<<<<<<<
@@ -7266,7 +7266,7 @@ static int __pyx_pf_5_cdec_5TRule_6scores_2__set__(struct __pyx_obj_5_cdec_TRule
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__set__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":153
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":153
  * 
  *         def __set__(self, scores):
  *             cdef FastSparseVector[double]* scores_ = &self.rule.get().scores_             # <<<<<<<<<<<<<<
@@ -7275,7 +7275,7 @@ static int __pyx_pf_5_cdec_5TRule_6scores_2__set__(struct __pyx_obj_5_cdec_TRule
  */
   __pyx_v_scores_ = (&__pyx_v_self->rule->get()->scores_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":154
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":154
  *         def __set__(self, scores):
  *             cdef FastSparseVector[double]* scores_ = &self.rule.get().scores_
  *             scores_.clear()             # <<<<<<<<<<<<<<
@@ -7284,7 +7284,7 @@ static int __pyx_pf_5_cdec_5TRule_6scores_2__set__(struct __pyx_obj_5_cdec_TRule
  */
   __pyx_v_scores_->clear();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":157
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":157
  *             cdef int fid
  *             cdef float fval
  *             for fname, fval in scores.items():             # <<<<<<<<<<<<<<
@@ -7389,7 +7389,7 @@ static int __pyx_pf_5_cdec_5TRule_6scores_2__set__(struct __pyx_obj_5_cdec_TRule
     __pyx_t_5 = 0;
     __pyx_v_fval = __pyx_t_9;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":158
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":158
  *             cdef float fval
  *             for fname, fval in scores.items():
  *                 fn = as_str(fname)             # <<<<<<<<<<<<<<
@@ -7402,7 +7402,7 @@ static int __pyx_pf_5_cdec_5TRule_6scores_2__set__(struct __pyx_obj_5_cdec_TRule
     __pyx_v_fn = ((PyObject*)__pyx_t_2);
     __pyx_t_2 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":159
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":159
  *             for fname, fval in scores.items():
  *                 fn = as_str(fname)
  *                 fid = FDConvert(fn)             # <<<<<<<<<<<<<<
@@ -7412,7 +7412,7 @@ static int __pyx_pf_5_cdec_5TRule_6scores_2__set__(struct __pyx_obj_5_cdec_TRule
     __pyx_t_10 = PyBytes_AsString(((PyObject *)__pyx_v_fn)); if (unlikely((!__pyx_t_10) && PyErr_Occurred())) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 159; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_fid = FD::Convert(__pyx_t_10);
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":160
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":160
  *                 fn = as_str(fname)
  *                 fid = FDConvert(fn)
  *                 if fid < 0: raise KeyError(fname)             # <<<<<<<<<<<<<<
@@ -7436,7 +7436,7 @@ static int __pyx_pf_5_cdec_5TRule_6scores_2__set__(struct __pyx_obj_5_cdec_TRule
     }
     __pyx_L7:;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":161
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":161
  *                 fid = FDConvert(fn)
  *                 if fid < 0: raise KeyError(fname)
  *                 scores_.set_value(fid, fval)             # <<<<<<<<<<<<<<
@@ -7475,7 +7475,7 @@ static PyObject *__pyx_pw_5_cdec_5TRule_3lhs_1__get__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":164
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":164
  * 
  *     property lhs:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -7493,7 +7493,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_3lhs___get__(struct __pyx_obj_5_cdec_TRu
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":165
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":165
  *     property lhs:
  *         def __get__(self):
  *             return NT(TDConvert(-self.rule.get().lhs_).c_str())             # <<<<<<<<<<<<<<
@@ -7539,7 +7539,7 @@ static int __pyx_pw_5_cdec_5TRule_3lhs_3__set__(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":167
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":167
  *             return NT(TDConvert(-self.rule.get().lhs_).c_str())
  * 
  *         def __set__(self, lhs):             # <<<<<<<<<<<<<<
@@ -7561,7 +7561,7 @@ static int __pyx_pf_5_cdec_5TRule_3lhs_2__set__(struct __pyx_obj_5_cdec_TRule *_
   __Pyx_RefNannySetupContext("__set__", 0);
   __Pyx_INCREF(__pyx_v_lhs);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":168
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":168
  * 
  *         def __set__(self, lhs):
  *             if not isinstance(lhs, NT):             # <<<<<<<<<<<<<<
@@ -7572,7 +7572,7 @@ static int __pyx_pf_5_cdec_5TRule_3lhs_2__set__(struct __pyx_obj_5_cdec_TRule *_
   __pyx_t_2 = (!__pyx_t_1);
   if (__pyx_t_2) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":169
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":169
  *         def __set__(self, lhs):
  *             if not isinstance(lhs, NT):
  *                 lhs = NT(lhs)             # <<<<<<<<<<<<<<
@@ -7594,7 +7594,7 @@ static int __pyx_pf_5_cdec_5TRule_3lhs_2__set__(struct __pyx_obj_5_cdec_TRule *_
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":170
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":170
  *             if not isinstance(lhs, NT):
  *                 lhs = NT(lhs)
  *             self.rule.get().lhs_ = -TDConvert((<NT> lhs).cat)             # <<<<<<<<<<<<<<
@@ -7629,7 +7629,7 @@ static PyObject *__pyx_pw_5_cdec_5TRule_5__str__(PyObject *__pyx_v_self) {
 }
 static PyObject *__pyx_gb_5_cdec_5TRule_7__str___2generator19(__pyx_GeneratorObject *__pyx_generator, PyObject *__pyx_sent_value); /* proto */
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":173
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":173
  * 
  *     def __str__(self):
  *         scores = ' '.join('%s=%s' % feat for feat in self.scores)             # <<<<<<<<<<<<<<
@@ -7771,7 +7771,7 @@ static PyObject *__pyx_gb_5_cdec_5TRule_7__str___2generator19(__pyx_GeneratorObj
   return NULL;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":172
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":172
  *             self.rule.get().lhs_ = -TDConvert((<NT> lhs).cat)
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -7803,7 +7803,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_4__str__(struct __pyx_obj_5_cdec_TRule *
   __Pyx_INCREF((PyObject *)__pyx_cur_scope->__pyx_v_self);
   __Pyx_GIVEREF((PyObject *)__pyx_cur_scope->__pyx_v_self);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":173
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":173
  * 
  *     def __str__(self):
  *         scores = ' '.join('%s=%s' % feat for feat in self.scores)             # <<<<<<<<<<<<<<
@@ -7826,7 +7826,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_4__str__(struct __pyx_obj_5_cdec_TRule *
   __pyx_v_scores = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":174
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":174
  *     def __str__(self):
  *         scores = ' '.join('%s=%s' % feat for feat in self.scores)
  *         return '%s ||| %s ||| %s ||| %s' % (self.lhs,             # <<<<<<<<<<<<<<
@@ -7837,7 +7837,7 @@ static PyObject *__pyx_pf_5_cdec_5TRule_4__str__(struct __pyx_obj_5_cdec_TRule *
   __pyx_t_2 = PyObject_GetAttr(((PyObject *)__pyx_cur_scope->__pyx_v_self), __pyx_n_s__lhs); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 174; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":175
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":175
  *         scores = ' '.join('%s=%s' % feat for feat in self.scores)
  *         return '%s ||| %s ||| %s ||| %s' % (self.lhs,
  *                 _phrase(self.f), _phrase(self.e), scores)             # <<<<<<<<<<<<<<
@@ -7978,7 +7978,7 @@ static int __pyx_pw_5_cdec_5MRule_1__init__(PyObject *__pyx_v_self, PyObject *__
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":178
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":178
  * 
  * cdef class MRule(TRule):
  *     def __init__(self, lhs, rhs, scores):             # <<<<<<<<<<<<<<
@@ -8004,7 +8004,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":183
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":183
  *         rhs: right hand side phrase (list of words/NT)
  *         scores: dictionary of feature scores"""
  *         cdef unsigned i = 1             # <<<<<<<<<<<<<<
@@ -8013,7 +8013,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
  */
   __pyx_v_i = 1;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":184
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":184
  *         scores: dictionary of feature scores"""
  *         cdef unsigned i = 1
  *         e = []             # <<<<<<<<<<<<<<
@@ -8025,7 +8025,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
   __pyx_v_e = ((PyObject*)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":185
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":185
  *         cdef unsigned i = 1
  *         e = []
  *         for s in rhs:             # <<<<<<<<<<<<<<
@@ -8070,7 +8070,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
     __pyx_v_s = __pyx_t_4;
     __pyx_t_4 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":186
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":186
  *         e = []
  *         for s in rhs:
  *             if isinstance(s, NT):             # <<<<<<<<<<<<<<
@@ -8080,7 +8080,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
     __pyx_t_5 = __Pyx_TypeCheck(__pyx_v_s, ((PyObject*)__pyx_ptype_5_cdec_NT)); 
     if (__pyx_t_5) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":187
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":187
  *         for s in rhs:
  *             if isinstance(s, NT):
  *                 e.append(NTRef(i))             # <<<<<<<<<<<<<<
@@ -8100,7 +8100,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
       __pyx_t_7 = PyList_Append(__pyx_v_e, __pyx_t_4); if (unlikely(__pyx_t_7 == -1)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 187; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":188
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":188
  *             if isinstance(s, NT):
  *                 e.append(NTRef(i))
  *                 i += 1             # <<<<<<<<<<<<<<
@@ -8112,7 +8112,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
     }
     /*else*/ {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":190
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":190
  *                 i += 1
  *             else:
  *                 e.append(s)             # <<<<<<<<<<<<<<
@@ -8125,7 +8125,7 @@ static int __pyx_pf_5_cdec_5MRule___init__(struct __pyx_obj_5_cdec_MRule *__pyx_
   }
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":191
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":191
  *             else:
  *                 e.append(s)
  *         super(MRule, self).__init__(lhs, rhs, e, scores, None)             # <<<<<<<<<<<<<<
@@ -8193,7 +8193,7 @@ static void __pyx_pw_5_cdec_7Grammar_1__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":196
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":196
  *     cdef shared_ptr[grammar.Grammar]* grammar
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -8205,7 +8205,7 @@ static void __pyx_pf_5_cdec_7Grammar___dealloc__(CYTHON_UNUSED struct __pyx_obj_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":197
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":197
  * 
  *     def __dealloc__(self):
  *         del self.grammar             # <<<<<<<<<<<<<<
@@ -8229,7 +8229,7 @@ static PyObject *__pyx_pw_5_cdec_7Grammar_3__iter__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":199
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":199
  *         del self.grammar
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -8292,7 +8292,7 @@ static PyObject *__pyx_gb_5_cdec_7Grammar_4generator3(__pyx_GeneratorObject *__p
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 199; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":200
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":200
  * 
  *     def __iter__(self):
  *         cdef grammar.const_GrammarIter* root = self.grammar.get().GetRoot()             # <<<<<<<<<<<<<<
@@ -8301,7 +8301,7 @@ static PyObject *__pyx_gb_5_cdec_7Grammar_4generator3(__pyx_GeneratorObject *__p
  */
   __pyx_cur_scope->__pyx_v_root = __pyx_cur_scope->__pyx_v_self->grammar->get()->GetRoot();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":201
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":201
  *     def __iter__(self):
  *         cdef grammar.const_GrammarIter* root = self.grammar.get().GetRoot()
  *         cdef grammar.const_RuleBin* rbin = root.GetRules()             # <<<<<<<<<<<<<<
@@ -8310,7 +8310,7 @@ static PyObject *__pyx_gb_5_cdec_7Grammar_4generator3(__pyx_GeneratorObject *__p
  */
   __pyx_cur_scope->__pyx_v_rbin = __pyx_cur_scope->__pyx_v_root->GetRules();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":204
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":204
  *         cdef TRule trule
  *         cdef unsigned i
  *         for i in range(rbin.GetNumRules()):             # <<<<<<<<<<<<<<
@@ -8321,7 +8321,7 @@ static PyObject *__pyx_gb_5_cdec_7Grammar_4generator3(__pyx_GeneratorObject *__p
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":205
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":205
  *         cdef unsigned i
  *         for i in range(rbin.GetNumRules()):
  *             trule = TRule.__new__(TRule)             # <<<<<<<<<<<<<<
@@ -8337,7 +8337,7 @@ static PyObject *__pyx_gb_5_cdec_7Grammar_4generator3(__pyx_GeneratorObject *__p
     __pyx_cur_scope->__pyx_v_trule = ((struct __pyx_obj_5_cdec_TRule *)__pyx_t_3);
     __pyx_t_3 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":206
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":206
  *         for i in range(rbin.GetNumRules()):
  *             trule = TRule.__new__(TRule)
  *             trule.rule = new shared_ptr[grammar.TRule](rbin.GetIthRule(i))             # <<<<<<<<<<<<<<
@@ -8346,7 +8346,7 @@ static PyObject *__pyx_gb_5_cdec_7Grammar_4generator3(__pyx_GeneratorObject *__p
  */
     __pyx_cur_scope->__pyx_v_trule->rule = new boost::shared_ptr<TRule>(__pyx_cur_scope->__pyx_v_rbin->GetIthRule(__pyx_cur_scope->__pyx_v_i));
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":207
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":207
  *             trule = TRule.__new__(TRule)
  *             trule.rule = new shared_ptr[grammar.TRule](rbin.GetIthRule(i))
  *             yield trule             # <<<<<<<<<<<<<<
@@ -8391,7 +8391,7 @@ static PyObject *__pyx_pw_5_cdec_7Grammar_4name_1__get__(PyObject *__pyx_v_self)
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":210
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":210
  * 
  *     property name:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -8409,7 +8409,7 @@ static PyObject *__pyx_pf_5_cdec_7Grammar_4name___get__(struct __pyx_obj_5_cdec_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":211
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":211
  *     property name:
  *         def __get__(self):
  *             str(self.grammar.get().GetGrammarName().c_str())             # <<<<<<<<<<<<<<
@@ -8452,7 +8452,7 @@ static int __pyx_pw_5_cdec_7Grammar_4name_3__set__(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":213
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":213
  *             str(self.grammar.get().GetGrammarName().c_str())
  * 
  *         def __set__(self, name):             # <<<<<<<<<<<<<<
@@ -8471,7 +8471,7 @@ static int __pyx_pf_5_cdec_7Grammar_4name_2__set__(struct __pyx_obj_5_cdec_Gramm
   __Pyx_RefNannySetupContext("__set__", 0);
   __Pyx_INCREF(__pyx_v_name);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":214
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":214
  * 
  *         def __set__(self, name):
  *             name = as_str(name)             # <<<<<<<<<<<<<<
@@ -8484,7 +8484,7 @@ static int __pyx_pf_5_cdec_7Grammar_4name_2__set__(struct __pyx_obj_5_cdec_Gramm
   __pyx_v_name = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":215
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":215
  *         def __set__(self, name):
  *             name = as_str(name)
  *             self.grammar.get().SetGrammarName(name)             # <<<<<<<<<<<<<<
@@ -8557,7 +8557,7 @@ static int __pyx_pw_5_cdec_11TextGrammar_1__init__(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":218
+/* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":218
  * 
  * cdef class TextGrammar(Grammar):
  *     def __init__(self, rules):             # <<<<<<<<<<<<<<
@@ -8581,7 +8581,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":220
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":220
  *     def __init__(self, rules):
  *         """TextGrammar(rules) -> SCFG Grammar containing the rules."""
  *         self.grammar = new shared_ptr[grammar.Grammar](new grammar.TextGrammar())             # <<<<<<<<<<<<<<
@@ -8590,7 +8590,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
  */
   __pyx_v_self->__pyx_base.grammar = new boost::shared_ptr<Grammar>(new TextGrammar());
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":221
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":221
  *         """TextGrammar(rules) -> SCFG Grammar containing the rules."""
  *         self.grammar = new shared_ptr[grammar.Grammar](new grammar.TextGrammar())
  *         cdef grammar.TextGrammar* _g = <grammar.TextGrammar*> self.grammar.get()             # <<<<<<<<<<<<<<
@@ -8599,7 +8599,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
  */
   __pyx_v__g = ((TextGrammar *)__pyx_v_self->__pyx_base.grammar->get());
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":222
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":222
  *         self.grammar = new shared_ptr[grammar.Grammar](new grammar.TextGrammar())
  *         cdef grammar.TextGrammar* _g = <grammar.TextGrammar*> self.grammar.get()
  *         for trule in rules:             # <<<<<<<<<<<<<<
@@ -8644,7 +8644,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
     __pyx_v_trule = __pyx_t_4;
     __pyx_t_4 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":223
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":223
  *         cdef grammar.TextGrammar* _g = <grammar.TextGrammar*> self.grammar.get()
  *         for trule in rules:
  *             if isinstance(trule, _sa.Rule):             # <<<<<<<<<<<<<<
@@ -8654,7 +8654,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
     __pyx_t_5 = __Pyx_TypeCheck(__pyx_v_trule, ((PyObject*)__pyx_ptype_4cdec_2sa_3_sa_Rule)); 
     if (__pyx_t_5) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":224
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":224
  *         for trule in rules:
  *             if isinstance(trule, _sa.Rule):
  *                 trule = convert_rule(trule)             # <<<<<<<<<<<<<<
@@ -8670,7 +8670,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
       goto __pyx_L5;
     }
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":225
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":225
  *             if isinstance(trule, _sa.Rule):
  *                 trule = convert_rule(trule)
  *             elif not isinstance(trule, TRule):             # <<<<<<<<<<<<<<
@@ -8681,7 +8681,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
     __pyx_t_6 = (!__pyx_t_5);
     if (__pyx_t_6) {
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":226
+      /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":226
  *                 trule = convert_rule(trule)
  *             elif not isinstance(trule, TRule):
  *                 raise ValueError('the grammar should contain TRule objects')             # <<<<<<<<<<<<<<
@@ -8696,7 +8696,7 @@ static int __pyx_pf_5_cdec_11TextGrammar___init__(struct __pyx_obj_5_cdec_TextGr
     }
     __pyx_L5:;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":227
+    /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":227
  *             elif not isinstance(trule, TRule):
  *                 raise ValueError('the grammar should contain TRule objects')
  *             _g.AddRule((<TRule> trule).rule[0])             # <<<<<<<<<<<<<<
@@ -8727,7 +8727,7 @@ static void __pyx_pw_5_cdec_10Hypergraph_1__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":8
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":8
  *     cdef MT19937* rng
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -8740,7 +8740,7 @@ static void __pyx_pf_5_cdec_10Hypergraph___dealloc__(struct __pyx_obj_5_cdec_Hyp
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":9
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":9
  * 
  *     def __dealloc__(self):
  *         del self.hg             # <<<<<<<<<<<<<<
@@ -8749,7 +8749,7 @@ static void __pyx_pf_5_cdec_10Hypergraph___dealloc__(struct __pyx_obj_5_cdec_Hyp
  */
   delete __pyx_v_self->hg;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":10
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":10
  *     def __dealloc__(self):
  *         del self.hg
  *         if self.rng != NULL:             # <<<<<<<<<<<<<<
@@ -8759,7 +8759,7 @@ static void __pyx_pf_5_cdec_10Hypergraph___dealloc__(struct __pyx_obj_5_cdec_Hyp
   __pyx_t_1 = (__pyx_v_self->rng != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":11
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":11
  *         del self.hg
  *         if self.rng != NULL:
  *             del self.rng             # <<<<<<<<<<<<<<
@@ -8774,7 +8774,7 @@ static void __pyx_pf_5_cdec_10Hypergraph___dealloc__(struct __pyx_obj_5_cdec_Hyp
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":13
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":13
  *             del self.rng
  * 
  *     cdef MT19937* _rng(self):             # <<<<<<<<<<<<<<
@@ -8792,7 +8792,7 @@ static MT19937 *__pyx_f_5_cdec_10Hypergraph__rng(struct __pyx_obj_5_cdec_Hypergr
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("_rng", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":14
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":14
  * 
  *     cdef MT19937* _rng(self):
  *         if self.rng == NULL:             # <<<<<<<<<<<<<<
@@ -8802,7 +8802,7 @@ static MT19937 *__pyx_f_5_cdec_10Hypergraph__rng(struct __pyx_obj_5_cdec_Hypergr
   __pyx_t_1 = (__pyx_v_self->rng == NULL);
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":15
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":15
  *     cdef MT19937* _rng(self):
  *         if self.rng == NULL:
  *             self.rng = new MT19937()             # <<<<<<<<<<<<<<
@@ -8820,7 +8820,7 @@ static MT19937 *__pyx_f_5_cdec_10Hypergraph__rng(struct __pyx_obj_5_cdec_Hypergr
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":16
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":16
  *         if self.rng == NULL:
  *             self.rng = new MT19937()
  *         return self.rng             # <<<<<<<<<<<<<<
@@ -8852,7 +8852,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_3viterbi(PyObject *__pyx_v_self, C
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":18
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":18
  *         return self.rng
  * 
  *     def viterbi(self):             # <<<<<<<<<<<<<<
@@ -8871,7 +8871,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_2viterbi(struct __pyx_obj_5_cdec_H
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("viterbi", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":21
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":21
  *         """hg.viterbi() -> String for the best hypothesis in the hypergraph."""
  *         cdef vector[WordID] trans
  *         hypergraph.ViterbiESentence(self.hg[0], &trans)             # <<<<<<<<<<<<<<
@@ -8880,7 +8880,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_2viterbi(struct __pyx_obj_5_cdec_H
  */
   ViterbiESentence((__pyx_v_self->hg[0]), (&__pyx_v_trans));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":22
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":22
  *         cdef vector[WordID] trans
  *         hypergraph.ViterbiESentence(self.hg[0], &trans)
  *         return unicode(GetString(trans).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -8930,7 +8930,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_5viterbi_trees(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":24
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":24
  *         return unicode(GetString(trans).c_str(), 'utf8')
  * 
  *     def viterbi_trees(self):             # <<<<<<<<<<<<<<
@@ -8950,7 +8950,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_4viterbi_trees(struct __pyx_obj_5_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("viterbi_trees", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":29
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":29
  *         e_tree: Target tree for the best hypothesis in the hypergraph.
  *         """
  *         f_tree = unicode(hypergraph.ViterbiFTree(self.hg[0]).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -8973,7 +8973,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_4viterbi_trees(struct __pyx_obj_5_
   __pyx_v_f_tree = ((PyObject*)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":30
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":30
  *         """
  *         f_tree = unicode(hypergraph.ViterbiFTree(self.hg[0]).c_str(), 'utf8')
  *         e_tree = unicode(hypergraph.ViterbiETree(self.hg[0]).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -8996,7 +8996,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_4viterbi_trees(struct __pyx_obj_5_
   __pyx_v_e_tree = ((PyObject*)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":31
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":31
  *         f_tree = unicode(hypergraph.ViterbiFTree(self.hg[0]).c_str(), 'utf8')
  *         e_tree = unicode(hypergraph.ViterbiETree(self.hg[0]).c_str(), 'utf8')
  *         return (f_tree, e_tree)             # <<<<<<<<<<<<<<
@@ -9043,7 +9043,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_7viterbi_features(PyObject *__pyx_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":33
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":33
  *         return (f_tree, e_tree)
  * 
  *     def viterbi_features(self):             # <<<<<<<<<<<<<<
@@ -9061,7 +9061,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_6viterbi_features(struct __pyx_obj
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("viterbi_features", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":36
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":36
  *         """hg.viterbi_features() -> SparseVector with the features corresponding
  *         to the best derivation in the hypergraph."""
  *         cdef SparseVector fmap = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -9074,7 +9074,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_6viterbi_features(struct __pyx_obj
   __pyx_v_fmap = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":37
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":37
  *         to the best derivation in the hypergraph."""
  *         cdef SparseVector fmap = SparseVector.__new__(SparseVector)
  *         fmap.vector = new FastSparseVector[weight_t](hypergraph.ViterbiFeatures(self.hg[0]))             # <<<<<<<<<<<<<<
@@ -9083,7 +9083,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_6viterbi_features(struct __pyx_obj
  */
   __pyx_v_fmap->vector = new FastSparseVector<weight_t>(ViterbiFeatures((__pyx_v_self->hg[0])));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":38
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":38
  *         cdef SparseVector fmap = SparseVector.__new__(SparseVector)
  *         fmap.vector = new FastSparseVector[weight_t](hypergraph.ViterbiFeatures(self.hg[0]))
  *         return fmap             # <<<<<<<<<<<<<<
@@ -9119,7 +9119,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_9viterbi_forest(PyObject *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":40
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":40
  *         return fmap
  * 
  *     def viterbi_forest(self):             # <<<<<<<<<<<<<<
@@ -9137,7 +9137,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_8viterbi_forest(struct __pyx_obj_5
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("viterbi_forest", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":41
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":41
  * 
  *     def viterbi_forest(self):
  *         cdef Hypergraph hg = Hypergraph()             # <<<<<<<<<<<<<<
@@ -9149,7 +9149,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_8viterbi_forest(struct __pyx_obj_5
   __pyx_v_hg = ((struct __pyx_obj_5_cdec_Hypergraph *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":42
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":42
  *     def viterbi_forest(self):
  *         cdef Hypergraph hg = Hypergraph()
  *         hg.hg = new hypergraph.Hypergraph(self.hg[0].CreateViterbiHypergraph(NULL).get()[0])             # <<<<<<<<<<<<<<
@@ -9158,7 +9158,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_8viterbi_forest(struct __pyx_obj_5
  */
   __pyx_v_hg->hg = new Hypergraph(((__pyx_v_self->hg[0]).CreateViterbiHypergraph(NULL).get()[0]));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":43
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":43
  *         cdef Hypergraph hg = Hypergraph()
  *         hg.hg = new hypergraph.Hypergraph(self.hg[0].CreateViterbiHypergraph(NULL).get()[0])
  *         return hg             # <<<<<<<<<<<<<<
@@ -9195,7 +9195,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_11viterbi_joshua(PyObject *__pyx_v
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":45
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":45
  *         return hg
  * 
  *     def viterbi_joshua(self):             # <<<<<<<<<<<<<<
@@ -9213,7 +9213,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_10viterbi_joshua(struct __pyx_obj_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("viterbi_joshua", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":47
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":47
  *     def viterbi_joshua(self):
  *         """hg.viterbi_joshua() -> Joshua representation of the best derivation."""
  *         return unicode(hypergraph.JoshuaVisualizationString(self.hg[0]).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -9264,7 +9264,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_13kbest(PyObject *__pyx_v_self, Py
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":49
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":49
  *         return unicode(hypergraph.JoshuaVisualizationString(self.hg[0]).c_str(), 'utf8')
  * 
  *     def kbest(self, size):             # <<<<<<<<<<<<<<
@@ -9332,7 +9332,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_14generator4(__pyx_GeneratorObject
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 49; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":51
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":51
  *     def kbest(self, size):
  *         """hg.kbest(size) -> List of k-best hypotheses in the hypergraph."""
  *         cdef kbest.KBestDerivations[vector[WordID], kbest.ESentenceTraversal]* derivations = new kbest.KBestDerivations[vector[WordID], kbest.ESentenceTraversal](self.hg[0], size)             # <<<<<<<<<<<<<<
@@ -9342,7 +9342,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_14generator4(__pyx_GeneratorObject
   __pyx_t_1 = __Pyx_PyInt_AsUnsignedInt(__pyx_cur_scope->__pyx_v_size); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 51; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_cur_scope->__pyx_v_derivations = new KBest::KBestDerivations<std::vector<WordID>,ESentenceTraversal>((__pyx_cur_scope->__pyx_v_self->hg[0]), __pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":54
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":54
  *         cdef kbest.KBestDerivations[vector[WordID], kbest.ESentenceTraversal].Derivation* derivation
  *         cdef unsigned k
  *         try:             # <<<<<<<<<<<<<<
@@ -9351,7 +9351,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_14generator4(__pyx_GeneratorObject
  */
   /*try:*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":55
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":55
  *         cdef unsigned k
  *         try:
  *             for k in range(size):             # <<<<<<<<<<<<<<
@@ -9362,7 +9362,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_14generator4(__pyx_GeneratorObject
     for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_2; __pyx_t_1+=1) {
       __pyx_cur_scope->__pyx_v_k = __pyx_t_1;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":56
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":56
  *         try:
  *             for k in range(size):
  *                 derivation = derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)             # <<<<<<<<<<<<<<
@@ -9371,7 +9371,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_14generator4(__pyx_GeneratorObject
  */
       __pyx_cur_scope->__pyx_v_derivation = __pyx_cur_scope->__pyx_v_derivations->LazyKthBest((__pyx_cur_scope->__pyx_v_self->hg->nodes_.size() - 1), __pyx_cur_scope->__pyx_v_k);
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":57
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":57
  *             for k in range(size):
  *                 derivation = derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 if not derivation: break             # <<<<<<<<<<<<<<
@@ -9385,7 +9385,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_14generator4(__pyx_GeneratorObject
       }
       __pyx_L9:;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":58
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":58
  *                 derivation = derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 if not derivation: break
  *                 yield unicode(GetString(derivation._yield).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -9422,7 +9422,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_14generator4(__pyx_GeneratorObject
     __pyx_L8_break:;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":60
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":60
  *                 yield unicode(GetString(derivation._yield).c_str(), 'utf8')
  *         finally:
  *             del derivations             # <<<<<<<<<<<<<<
@@ -9483,7 +9483,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_16kbest_trees(PyObject *__pyx_v_se
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":62
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":62
  *             del derivations
  * 
  *     def kbest_trees(self, size):             # <<<<<<<<<<<<<<
@@ -9553,7 +9553,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 62; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":64
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":64
  *     def kbest_trees(self, size):
  *         """hg.kbest_trees(size) -> List of k-best trees in the hypergraph."""
  *         cdef kbest.KBestDerivations[vector[WordID], kbest.FTreeTraversal]* f_derivations = new kbest.KBestDerivations[vector[WordID], kbest.FTreeTraversal](self.hg[0], size)             # <<<<<<<<<<<<<<
@@ -9563,7 +9563,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
   __pyx_t_1 = __Pyx_PyInt_AsUnsignedInt(__pyx_cur_scope->__pyx_v_size); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_cur_scope->__pyx_v_f_derivations = new KBest::KBestDerivations<std::vector<WordID>,FTreeTraversal>((__pyx_cur_scope->__pyx_v_self->hg[0]), __pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":66
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":66
  *         cdef kbest.KBestDerivations[vector[WordID], kbest.FTreeTraversal]* f_derivations = new kbest.KBestDerivations[vector[WordID], kbest.FTreeTraversal](self.hg[0], size)
  *         cdef kbest.KBestDerivations[vector[WordID], kbest.FTreeTraversal].Derivation* f_derivation
  *         cdef kbest.KBestDerivations[vector[WordID], kbest.ETreeTraversal]* e_derivations = new kbest.KBestDerivations[vector[WordID], kbest.ETreeTraversal](self.hg[0], size)             # <<<<<<<<<<<<<<
@@ -9573,7 +9573,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
   __pyx_t_1 = __Pyx_PyInt_AsUnsignedInt(__pyx_cur_scope->__pyx_v_size); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 66; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_cur_scope->__pyx_v_e_derivations = new KBest::KBestDerivations<std::vector<WordID>,ETreeTraversal>((__pyx_cur_scope->__pyx_v_self->hg[0]), __pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":69
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":69
  *         cdef kbest.KBestDerivations[vector[WordID], kbest.ETreeTraversal].Derivation* e_derivation
  *         cdef unsigned k
  *         try:             # <<<<<<<<<<<<<<
@@ -9582,7 +9582,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
  */
   /*try:*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":70
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":70
  *         cdef unsigned k
  *         try:
  *             for k in range(size):             # <<<<<<<<<<<<<<
@@ -9593,7 +9593,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
     for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_2; __pyx_t_1+=1) {
       __pyx_cur_scope->__pyx_v_k = __pyx_t_1;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":71
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":71
  *         try:
  *             for k in range(size):
  *                 f_derivation = f_derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)             # <<<<<<<<<<<<<<
@@ -9602,7 +9602,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
  */
       __pyx_cur_scope->__pyx_v_f_derivation = __pyx_cur_scope->__pyx_v_f_derivations->LazyKthBest((__pyx_cur_scope->__pyx_v_self->hg->nodes_.size() - 1), __pyx_cur_scope->__pyx_v_k);
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":72
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":72
  *             for k in range(size):
  *                 f_derivation = f_derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 e_derivation = e_derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)             # <<<<<<<<<<<<<<
@@ -9611,7 +9611,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
  */
       __pyx_cur_scope->__pyx_v_e_derivation = __pyx_cur_scope->__pyx_v_e_derivations->LazyKthBest((__pyx_cur_scope->__pyx_v_self->hg->nodes_.size() - 1), __pyx_cur_scope->__pyx_v_k);
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":73
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":73
  *                 f_derivation = f_derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 e_derivation = e_derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 if not f_derivation or not e_derivation: break             # <<<<<<<<<<<<<<
@@ -9631,7 +9631,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
       }
       __pyx_L9:;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":74
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":74
  *                 e_derivation = e_derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 if not f_derivation or not e_derivation: break
  *                 f_tree = unicode(GetString(f_derivation._yield).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -9657,7 +9657,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
       __pyx_cur_scope->__pyx_v_f_tree = ((PyObject*)__pyx_t_6);
       __pyx_t_6 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":75
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":75
  *                 if not f_derivation or not e_derivation: break
  *                 f_tree = unicode(GetString(f_derivation._yield).c_str(), 'utf8')
  *                 e_tree = unicode(GetString(e_derivation._yield).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -9683,7 +9683,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
       __pyx_cur_scope->__pyx_v_e_tree = ((PyObject*)__pyx_t_6);
       __pyx_t_6 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":76
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":76
  *                 f_tree = unicode(GetString(f_derivation._yield).c_str(), 'utf8')
  *                 e_tree = unicode(GetString(e_derivation._yield).c_str(), 'utf8')
  *                 yield (f_tree, e_tree)             # <<<<<<<<<<<<<<
@@ -9715,7 +9715,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
     __pyx_L8_break:;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":78
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":78
  *                 yield (f_tree, e_tree)
  *         finally:
  *             del f_derivations             # <<<<<<<<<<<<<<
@@ -9739,7 +9739,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_17generator5(__pyx_GeneratorObject
     __pyx_L6:;
     delete __pyx_cur_scope->__pyx_v_f_derivations;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":79
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":79
  *         finally:
  *             del f_derivations
  *             del e_derivations             # <<<<<<<<<<<<<<
@@ -9785,7 +9785,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_19kbest_features(PyObject *__pyx_v
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":81
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":81
  *             del e_derivations
  * 
  *     def kbest_features(self, size):             # <<<<<<<<<<<<<<
@@ -9852,7 +9852,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 81; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":83
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":83
  *     def kbest_features(self, size):
  *         """hg.kbest_trees(size) -> List of k-best feature vectors in the hypergraph."""
  *         cdef kbest.KBestDerivations[FastSparseVector[weight_t], kbest.FeatureVectorTraversal]* derivations = new kbest.KBestDerivations[FastSparseVector[weight_t], kbest.FeatureVectorTraversal](self.hg[0], size)             # <<<<<<<<<<<<<<
@@ -9862,7 +9862,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
   __pyx_t_1 = __Pyx_PyInt_AsUnsignedInt(__pyx_cur_scope->__pyx_v_size); if (unlikely((__pyx_t_1 == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 83; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_cur_scope->__pyx_v_derivations = new KBest::KBestDerivations<FastSparseVector<weight_t>,FeatureVectorTraversal>((__pyx_cur_scope->__pyx_v_self->hg[0]), __pyx_t_1);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":87
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":87
  *         cdef SparseVector fmap
  *         cdef unsigned k
  *         try:             # <<<<<<<<<<<<<<
@@ -9871,7 +9871,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
  */
   /*try:*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":88
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":88
  *         cdef unsigned k
  *         try:
  *             for k in range(size):             # <<<<<<<<<<<<<<
@@ -9882,7 +9882,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
     for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_2; __pyx_t_1+=1) {
       __pyx_cur_scope->__pyx_v_k = __pyx_t_1;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":89
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":89
  *         try:
  *             for k in range(size):
  *                 derivation = derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)             # <<<<<<<<<<<<<<
@@ -9891,7 +9891,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
  */
       __pyx_cur_scope->__pyx_v_derivation = __pyx_cur_scope->__pyx_v_derivations->LazyKthBest((__pyx_cur_scope->__pyx_v_self->hg->nodes_.size() - 1), __pyx_cur_scope->__pyx_v_k);
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":90
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":90
  *             for k in range(size):
  *                 derivation = derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 if not derivation: break             # <<<<<<<<<<<<<<
@@ -9905,7 +9905,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
       }
       __pyx_L9:;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":91
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":91
  *                 derivation = derivations.LazyKthBest(self.hg.nodes_.size() - 1, k)
  *                 if not derivation: break
  *                 fmap = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -9921,7 +9921,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
       __pyx_cur_scope->__pyx_v_fmap = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_4);
       __pyx_t_4 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":92
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":92
  *                 if not derivation: break
  *                 fmap = SparseVector.__new__(SparseVector)
  *                 fmap.vector = new FastSparseVector[weight_t](derivation._yield)             # <<<<<<<<<<<<<<
@@ -9930,7 +9930,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
  */
       __pyx_cur_scope->__pyx_v_fmap->vector = new FastSparseVector<weight_t>(__pyx_cur_scope->__pyx_v_derivation->yield);
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":93
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":93
  *                 fmap = SparseVector.__new__(SparseVector)
  *                 fmap.vector = new FastSparseVector[weight_t](derivation._yield)
  *                 yield fmap             # <<<<<<<<<<<<<<
@@ -9954,7 +9954,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_20generator6(__pyx_GeneratorObject
     __pyx_L8_break:;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":95
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":95
  *                 yield fmap
  *         finally:
  *             del derivations             # <<<<<<<<<<<<<<
@@ -10023,7 +10023,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_22sample(PyObject *__pyx_v_self, P
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":97
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":97
  *             del derivations
  * 
  *     def sample(self, unsigned n):             # <<<<<<<<<<<<<<
@@ -10089,7 +10089,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_23generator7(__pyx_GeneratorObject
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 97; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":99
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":99
  *     def sample(self, unsigned n):
  *         """hg.sample(n) -> Sample of n hypotheses from the hypergraph."""
  *         cdef vector[hypergraph.Hypothesis]* hypos = new vector[hypergraph.Hypothesis]()             # <<<<<<<<<<<<<<
@@ -10104,7 +10104,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_23generator7(__pyx_GeneratorObject
   }
   __pyx_cur_scope->__pyx_v_hypos = __pyx_t_1;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":100
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":100
  *         """hg.sample(n) -> Sample of n hypotheses from the hypergraph."""
  *         cdef vector[hypergraph.Hypothesis]* hypos = new vector[hypergraph.Hypothesis]()
  *         hypergraph.sample_hypotheses(self.hg[0], n, self._rng(), hypos)             # <<<<<<<<<<<<<<
@@ -10113,7 +10113,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_23generator7(__pyx_GeneratorObject
  */
   HypergraphSampler::sample_hypotheses((__pyx_cur_scope->__pyx_v_self->hg[0]), __pyx_cur_scope->__pyx_v_n, ((struct __pyx_vtabstruct_5_cdec_Hypergraph *)__pyx_cur_scope->__pyx_v_self->__pyx_vtab)->_rng(__pyx_cur_scope->__pyx_v_self), __pyx_cur_scope->__pyx_v_hypos);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":102
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":102
  *         hypergraph.sample_hypotheses(self.hg[0], n, self._rng(), hypos)
  *         cdef unsigned k
  *         try:             # <<<<<<<<<<<<<<
@@ -10122,7 +10122,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_23generator7(__pyx_GeneratorObject
  */
   /*try:*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":103
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":103
  *         cdef unsigned k
  *         try:
  *             for k in range(hypos.size()):             # <<<<<<<<<<<<<<
@@ -10133,7 +10133,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_23generator7(__pyx_GeneratorObject
     for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
       __pyx_cur_scope->__pyx_v_k = __pyx_t_3;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":104
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":104
  *         try:
  *             for k in range(hypos.size()):
  *                 yield unicode(GetString(hypos[0][k].words).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -10169,7 +10169,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_23generator7(__pyx_GeneratorObject
     }
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":106
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":106
  *                 yield unicode(GetString(hypos[0][k].words).c_str(), 'utf8')
  *         finally:
  *             del hypos             # <<<<<<<<<<<<<<
@@ -10240,7 +10240,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_25sample_trees(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":108
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":108
  *             del hypos
  * 
  *     def sample_trees(self, unsigned n):             # <<<<<<<<<<<<<<
@@ -10306,7 +10306,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_26generator8(__pyx_GeneratorObject
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":110
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":110
  *     def sample_trees(self, unsigned n):
  *        """hg.sample_trees(n) -> Sample of n trees from the hypergraph."""
  *        cdef vector[string]* trees = new vector[string]()             # <<<<<<<<<<<<<<
@@ -10321,7 +10321,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_26generator8(__pyx_GeneratorObject
   }
   __pyx_cur_scope->__pyx_v_trees = __pyx_t_1;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":111
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":111
  *        """hg.sample_trees(n) -> Sample of n trees from the hypergraph."""
  *        cdef vector[string]* trees = new vector[string]()
  *        hypergraph.sample_trees(self.hg[0], n, self._rng(), trees)             # <<<<<<<<<<<<<<
@@ -10330,7 +10330,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_26generator8(__pyx_GeneratorObject
  */
   HypergraphSampler::sample_trees((__pyx_cur_scope->__pyx_v_self->hg[0]), __pyx_cur_scope->__pyx_v_n, ((struct __pyx_vtabstruct_5_cdec_Hypergraph *)__pyx_cur_scope->__pyx_v_self->__pyx_vtab)->_rng(__pyx_cur_scope->__pyx_v_self), __pyx_cur_scope->__pyx_v_trees);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":113
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":113
  *        hypergraph.sample_trees(self.hg[0], n, self._rng(), trees)
  *        cdef unsigned k
  *        try:             # <<<<<<<<<<<<<<
@@ -10339,7 +10339,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_26generator8(__pyx_GeneratorObject
  */
   /*try:*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":114
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":114
  *        cdef unsigned k
  *        try:
  *            for k in range(trees.size()):             # <<<<<<<<<<<<<<
@@ -10350,7 +10350,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_26generator8(__pyx_GeneratorObject
     for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
       __pyx_cur_scope->__pyx_v_k = __pyx_t_3;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":115
+      /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":115
  *        try:
  *            for k in range(trees.size()):
  *                yield unicode(trees[0][k].c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -10386,7 +10386,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_26generator8(__pyx_GeneratorObject
     }
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":117
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":117
  *                yield unicode(trees[0][k].c_str(), 'utf8')
  *        finally:
  *            del trees             # <<<<<<<<<<<<<<
@@ -10446,7 +10446,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_28intersect(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":119
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":119
  *            del trees
  * 
  *     def intersect(self, inp):             # <<<<<<<<<<<<<<
@@ -10466,7 +10466,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_27intersect(struct __pyx_obj_5_cde
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("intersect", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":122
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":122
  *         """hg.intersect(Lattice/string): Intersect the hypergraph with the provided reference."""
  *         cdef Lattice lat
  *         if isinstance(inp, Lattice):             # <<<<<<<<<<<<<<
@@ -10476,7 +10476,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_27intersect(struct __pyx_obj_5_cde
   __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_inp, ((PyObject*)__pyx_ptype_5_cdec_Lattice)); 
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":123
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":123
  *         cdef Lattice lat
  *         if isinstance(inp, Lattice):
  *             lat = <Lattice> inp             # <<<<<<<<<<<<<<
@@ -10488,7 +10488,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_27intersect(struct __pyx_obj_5_cde
     goto __pyx_L3;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":124
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":124
  *         if isinstance(inp, Lattice):
  *             lat = <Lattice> inp
  *         elif isinstance(inp, basestring):             # <<<<<<<<<<<<<<
@@ -10498,7 +10498,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_27intersect(struct __pyx_obj_5_cde
   __pyx_t_1 = PyObject_IsInstance(__pyx_v_inp, __pyx_builtin_basestring); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":125
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":125
  *             lat = <Lattice> inp
  *         elif isinstance(inp, basestring):
  *             lat = Lattice(inp)             # <<<<<<<<<<<<<<
@@ -10519,7 +10519,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_27intersect(struct __pyx_obj_5_cde
   }
   /*else*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":127
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":127
  *             lat = Lattice(inp)
  *         else:
  *             raise TypeError('cannot intersect hypergraph with %s' % type(inp))             # <<<<<<<<<<<<<<
@@ -10542,7 +10542,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_27intersect(struct __pyx_obj_5_cde
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":128
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":128
  *         else:
  *             raise TypeError('cannot intersect hypergraph with %s' % type(inp))
  *         return hypergraph.Intersect(lat.lattice[0], self.hg)             # <<<<<<<<<<<<<<
@@ -10638,7 +10638,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_30prune(PyObject *__pyx_v_self, Py
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":130
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":130
  *         return hypergraph.Intersect(lat.lattice[0], self.hg)
  * 
  *     def prune(self, beam_alpha=0, density=0, **kwargs):             # <<<<<<<<<<<<<<
@@ -10658,7 +10658,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_29prune(struct __pyx_obj_5_cdec_Hy
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("prune", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":134
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":134
  *         beam_alpha: use beam pruning
  *         density: use density pruning"""
  *         cdef hypergraph.EdgeMask* preserve_mask = NULL             # <<<<<<<<<<<<<<
@@ -10667,7 +10667,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_29prune(struct __pyx_obj_5_cdec_Hy
  */
   __pyx_v_preserve_mask = NULL;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":135
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":135
  *         density: use density pruning"""
  *         cdef hypergraph.EdgeMask* preserve_mask = NULL
  *         if 'csplit_preserve_full_word' in kwargs:             # <<<<<<<<<<<<<<
@@ -10677,7 +10677,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_29prune(struct __pyx_obj_5_cdec_Hy
   __pyx_t_1 = (__Pyx_PyDict_Contains(((PyObject *)__pyx_n_s_16), ((PyObject *)__pyx_v_kwargs), Py_EQ)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 135; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":136
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":136
  *         cdef hypergraph.EdgeMask* preserve_mask = NULL
  *         if 'csplit_preserve_full_word' in kwargs:
  *              preserve_mask = new hypergraph.EdgeMask(self.hg.edges_.size())             # <<<<<<<<<<<<<<
@@ -10686,7 +10686,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_29prune(struct __pyx_obj_5_cdec_Hy
  */
     __pyx_v_preserve_mask = new std::vector<bool>(__pyx_v_self->hg->edges_.size());
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":137
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":137
  *         if 'csplit_preserve_full_word' in kwargs:
  *              preserve_mask = new hypergraph.EdgeMask(self.hg.edges_.size())
  *              preserve_mask[0][hypergraph.GetFullWordEdgeIndex(self.hg[0])] = True             # <<<<<<<<<<<<<<
@@ -10698,7 +10698,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_29prune(struct __pyx_obj_5_cdec_Hy
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":138
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":138
  *              preserve_mask = new hypergraph.EdgeMask(self.hg.edges_.size())
  *              preserve_mask[0][hypergraph.GetFullWordEdgeIndex(self.hg[0])] = True
  *         self.hg.PruneInsideOutside(beam_alpha, density, preserve_mask, False, 1, False)             # <<<<<<<<<<<<<<
@@ -10709,7 +10709,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_29prune(struct __pyx_obj_5_cdec_Hy
   __pyx_t_3 = __pyx_PyFloat_AsDouble(__pyx_v_density); if (unlikely((__pyx_t_3 == (double)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 138; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->hg->PruneInsideOutside(__pyx_t_2, __pyx_t_3, __pyx_v_preserve_mask, 0, 1.0, 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":139
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":139
  *              preserve_mask[0][hypergraph.GetFullWordEdgeIndex(self.hg[0])] = True
  *         self.hg.PruneInsideOutside(beam_alpha, density, preserve_mask, False, 1, False)
  *         if preserve_mask:             # <<<<<<<<<<<<<<
@@ -10719,7 +10719,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_29prune(struct __pyx_obj_5_cdec_Hy
   __pyx_t_1 = (__pyx_v_preserve_mask != 0);
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":140
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":140
  *         self.hg.PruneInsideOutside(beam_alpha, density, preserve_mask, False, 1, False)
  *         if preserve_mask:
  *             del preserve_mask             # <<<<<<<<<<<<<<
@@ -10754,7 +10754,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_32lattice(PyObject *__pyx_v_self,
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":142
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":142
  *             del preserve_mask
  * 
  *     def lattice(self): # TODO direct hg -> lattice conversion in cdec             # <<<<<<<<<<<<<<
@@ -10774,7 +10774,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_31lattice(struct __pyx_obj_5_cdec_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("lattice", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":144
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":144
  *     def lattice(self): # TODO direct hg -> lattice conversion in cdec
  *         """hg.lattice() -> Lattice corresponding to the hypergraph."""
  *         cdef bytes plf = hypergraph.AsPLF(self.hg[0], True).c_str()             # <<<<<<<<<<<<<<
@@ -10786,7 +10786,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_31lattice(struct __pyx_obj_5_cdec_
   __pyx_v_plf = ((PyObject*)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":145
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":145
  *         """hg.lattice() -> Lattice corresponding to the hypergraph."""
  *         cdef bytes plf = hypergraph.AsPLF(self.hg[0], True).c_str()
  *         return Lattice(eval(plf))             # <<<<<<<<<<<<<<
@@ -10857,7 +10857,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_34plf(PyObject *__pyx_v_self, CYTH
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":147
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":147
  *         return Lattice(eval(plf))
  * 
  *     def plf(self):             # <<<<<<<<<<<<<<
@@ -10875,7 +10875,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_33plf(struct __pyx_obj_5_cdec_Hype
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("plf", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":149
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":149
  *     def plf(self):
  *         """hg.plf() -> Lattice PLF representation corresponding to the hypergraph."""
  *         return bytes(hypergraph.AsPLF(self.hg[0], True).c_str())             # <<<<<<<<<<<<<<
@@ -10922,7 +10922,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_36reweight(PyObject *__pyx_v_self,
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":151
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":151
  *         return bytes(hypergraph.AsPLF(self.hg[0], True).c_str())
  * 
  *     def reweight(self, weights):             # <<<<<<<<<<<<<<
@@ -10941,7 +10941,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_35reweight(struct __pyx_obj_5_cdec
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("reweight", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":153
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":153
  *     def reweight(self, weights):
  *         """hg.reweight(SparseVector/DenseVector): Reweight the hypergraph with a new vector."""
  *         if isinstance(weights, SparseVector):             # <<<<<<<<<<<<<<
@@ -10951,7 +10951,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_35reweight(struct __pyx_obj_5_cdec
   __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_weights, ((PyObject*)__pyx_ptype_5_cdec_SparseVector)); 
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":154
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":154
  *         """hg.reweight(SparseVector/DenseVector): Reweight the hypergraph with a new vector."""
  *         if isinstance(weights, SparseVector):
  *             self.hg.Reweight((<SparseVector> weights).vector[0])             # <<<<<<<<<<<<<<
@@ -10962,7 +10962,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_35reweight(struct __pyx_obj_5_cdec
     goto __pyx_L3;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":155
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":155
  *         if isinstance(weights, SparseVector):
  *             self.hg.Reweight((<SparseVector> weights).vector[0])
  *         elif isinstance(weights, DenseVector):             # <<<<<<<<<<<<<<
@@ -10972,7 +10972,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_35reweight(struct __pyx_obj_5_cdec
   __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_weights, ((PyObject*)__pyx_ptype_5_cdec_DenseVector)); 
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":156
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":156
  *             self.hg.Reweight((<SparseVector> weights).vector[0])
  *         elif isinstance(weights, DenseVector):
  *             self.hg.Reweight((<DenseVector> weights).vector[0])             # <<<<<<<<<<<<<<
@@ -10984,7 +10984,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_35reweight(struct __pyx_obj_5_cdec
   }
   /*else*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":158
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":158
  *             self.hg.Reweight((<DenseVector> weights).vector[0])
  *         else:
  *             raise TypeError('cannot reweight hypergraph with %s' % type(weights))             # <<<<<<<<<<<<<<
@@ -11032,7 +11032,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_5edges_1__get__(PyObject *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":161
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":161
  * 
  *     property edges:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11096,7 +11096,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_5edges_2generator9(__pyx_Generator
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 161; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":163
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":163
  *         def __get__(self):
  *             cdef unsigned i
  *             for i in range(self.hg.edges_.size()):             # <<<<<<<<<<<<<<
@@ -11107,7 +11107,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_5edges_2generator9(__pyx_Generator
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":164
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":164
  *             cdef unsigned i
  *             for i in range(self.hg.edges_.size()):
  *                 yield HypergraphEdge().init(self.hg, i)             # <<<<<<<<<<<<<<
@@ -11159,7 +11159,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_5nodes_1__get__(PyObject *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":167
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":167
  * 
  *     property nodes:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11223,7 +11223,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_5nodes_2generator10(__pyx_Generato
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 167; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":169
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":169
  *         def __get__(self):
  *             cdef unsigned i
  *             for i in range(self.hg.nodes_.size()):             # <<<<<<<<<<<<<<
@@ -11234,7 +11234,7 @@ static PyObject *__pyx_gb_5_cdec_10Hypergraph_5nodes_2generator10(__pyx_Generato
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":170
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":170
  *             cdef unsigned i
  *             for i in range(self.hg.nodes_.size()):
  *                 yield HypergraphNode().init(self.hg, i)             # <<<<<<<<<<<<<<
@@ -11285,7 +11285,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_4goal_1__get__(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":173
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":173
  * 
  *     property goal:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11303,7 +11303,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_4goal___get__(struct __pyx_obj_5_c
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":174
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":174
  *     property goal:
  *         def __get__(self):
  *             return HypergraphNode().init(self.hg, self.hg.GoalNode())             # <<<<<<<<<<<<<<
@@ -11344,7 +11344,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_6npaths_1__get__(PyObject *__pyx_v
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":177
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":177
  * 
  *     property npaths:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11361,7 +11361,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_6npaths___get__(struct __pyx_obj_5
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":178
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":178
  *     property npaths:
  *         def __get__(self):
  *             return self.hg.NumberOfPaths()             # <<<<<<<<<<<<<<
@@ -11399,7 +11399,7 @@ static PyObject *__pyx_pw_5_cdec_10Hypergraph_38inside_outside(PyObject *__pyx_v
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":180
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":180
  *             return self.hg.NumberOfPaths()
  * 
  *     def inside_outside(self):             # <<<<<<<<<<<<<<
@@ -11423,7 +11423,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("inside_outside", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":182
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":182
  *     def inside_outside(self):
  *         """hg.inside_outside() -> SparseVector with inside-outside scores for each feature."""
  *         cdef FastSparseVector[prob_t]* result = new FastSparseVector[prob_t]()             # <<<<<<<<<<<<<<
@@ -11432,7 +11432,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
   __pyx_v_result = new FastSparseVector<prob_t>();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":183
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":183
  *         """hg.inside_outside() -> SparseVector with inside-outside scores for each feature."""
  *         cdef FastSparseVector[prob_t]* result = new FastSparseVector[prob_t]()
  *         cdef prob_t z = hypergraph.InsideOutside(self.hg[0], result)             # <<<<<<<<<<<<<<
@@ -11441,7 +11441,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
   __pyx_v_z = InsideOutside<prob_t, EdgeProb, SparseVector<prob_t>, EdgeFeaturesAndProbWeightFunction>((__pyx_v_self->hg[0]), __pyx_v_result);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":184
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":184
  *         cdef FastSparseVector[prob_t]* result = new FastSparseVector[prob_t]()
  *         cdef prob_t z = hypergraph.InsideOutside(self.hg[0], result)
  *         result[0] /= z             # <<<<<<<<<<<<<<
@@ -11450,7 +11450,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
   (__pyx_v_result[0]) /= __pyx_v_z;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":185
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":185
  *         cdef prob_t z = hypergraph.InsideOutside(self.hg[0], result)
  *         result[0] /= z
  *         cdef SparseVector vector = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -11463,7 +11463,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
   __pyx_v_vector = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":186
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":186
  *         result[0] /= z
  *         cdef SparseVector vector = SparseVector.__new__(SparseVector)
  *         vector.vector = new FastSparseVector[double]()             # <<<<<<<<<<<<<<
@@ -11472,7 +11472,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
   __pyx_v_vector->vector = new FastSparseVector<double>();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":187
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":187
  *         cdef SparseVector vector = SparseVector.__new__(SparseVector)
  *         vector.vector = new FastSparseVector[double]()
  *         cdef FastSparseVector[prob_t].const_iterator* it = new FastSparseVector[prob_t].const_iterator(result[0], False)             # <<<<<<<<<<<<<<
@@ -11481,7 +11481,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
   __pyx_v_it = new FastSparseVector<prob_t>::const_iterator((__pyx_v_result[0]), 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":189
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":189
  *         cdef FastSparseVector[prob_t].const_iterator* it = new FastSparseVector[prob_t].const_iterator(result[0], False)
  *         cdef unsigned i
  *         for i in range(result.size()):             # <<<<<<<<<<<<<<
@@ -11492,7 +11492,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
     __pyx_v_i = __pyx_t_3;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":190
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":190
  *         cdef unsigned i
  *         for i in range(result.size()):
  *             vector.vector.set_value(it[0].ptr().first, log(it[0].ptr().second))             # <<<<<<<<<<<<<<
@@ -11501,7 +11501,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
     __pyx_v_vector->vector->set_value((__pyx_v_it[0]).operator->()->first, log((__pyx_v_it[0]).operator->()->second));
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":191
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":191
  *         for i in range(result.size()):
  *             vector.vector.set_value(it[0].ptr().first, log(it[0].ptr().second))
  *             pinc(it[0]) # ++it             # <<<<<<<<<<<<<<
@@ -11511,7 +11511,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
     (++(__pyx_v_it[0]));
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":192
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":192
  *             vector.vector.set_value(it[0].ptr().first, log(it[0].ptr().second))
  *             pinc(it[0]) # ++it
  *         del it             # <<<<<<<<<<<<<<
@@ -11520,7 +11520,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
   delete __pyx_v_it;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":193
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":193
  *             pinc(it[0]) # ++it
  *         del it
  *         del result             # <<<<<<<<<<<<<<
@@ -11529,7 +11529,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
  */
   delete __pyx_v_result;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":194
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":194
  *         del it
  *         del result
  *         return vector             # <<<<<<<<<<<<<<
@@ -11554,7 +11554,7 @@ static PyObject *__pyx_pf_5_cdec_10Hypergraph_37inside_outside(struct __pyx_obj_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":201
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":201
  *     cdef public TRule trule
  * 
  *     cdef init(self, hypergraph.Hypergraph* hg, unsigned i):             # <<<<<<<<<<<<<<
@@ -11571,7 +11571,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphEdge_init(struct __pyx_obj_5_cdec_Hy
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("init", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":202
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":202
  * 
  *     cdef init(self, hypergraph.Hypergraph* hg, unsigned i):
  *         self.hg = hg             # <<<<<<<<<<<<<<
@@ -11580,7 +11580,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphEdge_init(struct __pyx_obj_5_cdec_Hy
  */
   __pyx_v_self->hg = __pyx_v_hg;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":203
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":203
  *     cdef init(self, hypergraph.Hypergraph* hg, unsigned i):
  *         self.hg = hg
  *         self.edge = &hg.edges_[i]             # <<<<<<<<<<<<<<
@@ -11589,7 +11589,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphEdge_init(struct __pyx_obj_5_cdec_Hy
  */
   __pyx_v_self->edge = (&(__pyx_v_hg->edges_[__pyx_v_i]));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":204
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":204
  *         self.hg = hg
  *         self.edge = &hg.edges_[i]
  *         self.trule = TRule.__new__(TRule)             # <<<<<<<<<<<<<<
@@ -11605,7 +11605,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphEdge_init(struct __pyx_obj_5_cdec_Hy
   __pyx_v_self->trule = ((struct __pyx_obj_5_cdec_TRule *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":205
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":205
  *         self.edge = &hg.edges_[i]
  *         self.trule = TRule.__new__(TRule)
  *         self.trule.rule = new shared_ptr[grammar.TRule](self.edge.rule_)             # <<<<<<<<<<<<<<
@@ -11614,7 +11614,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphEdge_init(struct __pyx_obj_5_cdec_Hy
  */
   __pyx_v_self->trule->rule = new boost::shared_ptr<TRule>(__pyx_v_self->edge->rule_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":206
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":206
  *         self.trule = TRule.__new__(TRule)
  *         self.trule.rule = new shared_ptr[grammar.TRule](self.edge.rule_)
  *         return self             # <<<<<<<<<<<<<<
@@ -11649,7 +11649,7 @@ static Py_ssize_t __pyx_pw_5_cdec_14HypergraphEdge_1__len__(PyObject *__pyx_v_se
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":208
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":208
  *         return self
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -11662,7 +11662,7 @@ static Py_ssize_t __pyx_pf_5_cdec_14HypergraphEdge___len__(struct __pyx_obj_5_cd
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":209
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":209
  * 
  *     def __len__(self):
  *         return self.edge.tail_nodes_.size()             # <<<<<<<<<<<<<<
@@ -11689,7 +11689,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_9head_node_1__get__(PyObject *
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":212
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":212
  * 
  *     property head_node:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11707,7 +11707,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_9head_node___get__(struct __py
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":213
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":213
  *     property head_node:
  *         def __get__(self):
  *             return HypergraphNode().init(self.hg, self.edge.head_node_)             # <<<<<<<<<<<<<<
@@ -11749,7 +11749,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_10tail_nodes_1__get__(PyObject
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":216
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":216
  * 
  *     property tail_nodes:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11813,7 +11813,7 @@ static PyObject *__pyx_gb_5_cdec_14HypergraphEdge_10tail_nodes_2generator11(__py
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 216; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":218
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":218
  *         def __get__(self):
  *             cdef unsigned i
  *             for i in range(self.edge.tail_nodes_.size()):             # <<<<<<<<<<<<<<
@@ -11824,7 +11824,7 @@ static PyObject *__pyx_gb_5_cdec_14HypergraphEdge_10tail_nodes_2generator11(__py
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":219
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":219
  *             cdef unsigned i
  *             for i in range(self.edge.tail_nodes_.size()):
  *                 yield HypergraphNode().init(self.hg, self.edge.tail_nodes_[i])             # <<<<<<<<<<<<<<
@@ -11875,7 +11875,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_4span_1__get__(PyObject *__pyx
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":222
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":222
  * 
  *     property span:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11894,7 +11894,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_4span___get__(struct __pyx_obj
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":223
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":223
  *     property span:
  *         def __get__(self):
  *             return (self.edge.i_, self.edge.j_)             # <<<<<<<<<<<<<<
@@ -11943,7 +11943,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_8src_span_1__get__(PyObject *_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":226
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":226
  * 
  *     property src_span:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -11962,7 +11962,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_8src_span___get__(struct __pyx
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":227
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":227
  *     property src_span:
  *         def __get__(self):
  *             return (self.edge.prev_i_, self.edge.prev_j_)             # <<<<<<<<<<<<<<
@@ -12011,7 +12011,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_14feature_values_1__get__(PyOb
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":230
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":230
  * 
  *     property feature_values:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -12029,7 +12029,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_14feature_values___get__(struc
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":231
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":231
  *     property feature_values:
  *         def __get__(self):
  *             cdef SparseVector vector = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -12042,7 +12042,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_14feature_values___get__(struc
   __pyx_v_vector = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":232
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":232
  *         def __get__(self):
  *             cdef SparseVector vector = SparseVector.__new__(SparseVector)
  *             vector.vector = new FastSparseVector[double](self.edge.feature_values_)             # <<<<<<<<<<<<<<
@@ -12051,7 +12051,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_14feature_values___get__(struc
  */
   __pyx_v_vector->vector = new FastSparseVector<double>(__pyx_v_self->edge->feature_values_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":233
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":233
  *             cdef SparseVector vector = SparseVector.__new__(SparseVector)
  *             vector.vector = new FastSparseVector[double](self.edge.feature_values_)
  *             return vector             # <<<<<<<<<<<<<<
@@ -12087,7 +12087,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_4prob_1__get__(PyObject *__pyx
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":236
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":236
  * 
  *     property prob:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -12104,7 +12104,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_4prob___get__(struct __pyx_obj
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":237
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":237
  *     property prob:
  *         def __get__(self):
  *             return self.edge.edge_prob_.as_float()             # <<<<<<<<<<<<<<
@@ -12147,7 +12147,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_3__richcmp__(PyObject *__pyx_v
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":239
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":239
  *             return self.edge.edge_prob_.as_float()
  * 
  *     def __richcmp__(HypergraphEdge x, HypergraphEdge y, int op):             # <<<<<<<<<<<<<<
@@ -12165,7 +12165,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_2__richcmp__(struct __pyx_obj_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__richcmp__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":242
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":242
  *         if op == 2: # ==
  *             return x.edge == y.edge
  *         elif op == 3: # !=             # <<<<<<<<<<<<<<
@@ -12174,7 +12174,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_2__richcmp__(struct __pyx_obj_
  */
   switch (__pyx_v_op) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":240
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":240
  * 
  *     def __richcmp__(HypergraphEdge x, HypergraphEdge y, int op):
  *         if op == 2: # ==             # <<<<<<<<<<<<<<
@@ -12183,7 +12183,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_2__richcmp__(struct __pyx_obj_
  */
     case 2:
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":241
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":241
  *     def __richcmp__(HypergraphEdge x, HypergraphEdge y, int op):
  *         if op == 2: # ==
  *             return x.edge == y.edge             # <<<<<<<<<<<<<<
@@ -12198,7 +12198,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_2__richcmp__(struct __pyx_obj_
     goto __pyx_L0;
     break;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":242
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":242
  *         if op == 2: # ==
  *             return x.edge == y.edge
  *         elif op == 3: # !=             # <<<<<<<<<<<<<<
@@ -12207,7 +12207,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_2__richcmp__(struct __pyx_obj_
  */
     case 3:
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":243
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":243
  *             return x.edge == y.edge
  *         elif op == 3: # !=
  *             return not (x == y)             # <<<<<<<<<<<<<<
@@ -12226,7 +12226,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphEdge_2__richcmp__(struct __pyx_obj_
     break;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":244
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":244
  *         elif op == 3: # !=
  *             return not (x == y)
  *         raise NotImplemented('comparison not implemented for HypergraphEdge')             # <<<<<<<<<<<<<<
@@ -12262,7 +12262,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphEdge_5trule_1__get__(PyObject *__py
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":199
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":199
  *     cdef hypergraph.Hypergraph* hg
  *     cdef hypergraph.HypergraphEdge* edge
  *     cdef public TRule trule             # <<<<<<<<<<<<<<
@@ -12347,7 +12347,7 @@ static int __pyx_pf_5_cdec_14HypergraphEdge_5trule_4__del__(struct __pyx_obj_5_c
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":250
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":250
  *     cdef hypergraph.HypergraphNode* node
  * 
  *     cdef init(self, hypergraph.Hypergraph* hg, unsigned i):             # <<<<<<<<<<<<<<
@@ -12360,7 +12360,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphNode_init(struct __pyx_obj_5_cdec_Hy
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("init", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":251
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":251
  * 
  *     cdef init(self, hypergraph.Hypergraph* hg, unsigned i):
  *         self.hg = hg             # <<<<<<<<<<<<<<
@@ -12369,7 +12369,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphNode_init(struct __pyx_obj_5_cdec_Hy
  */
   __pyx_v_self->hg = __pyx_v_hg;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":252
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":252
  *     cdef init(self, hypergraph.Hypergraph* hg, unsigned i):
  *         self.hg = hg
  *         self.node = &hg.nodes_[i]             # <<<<<<<<<<<<<<
@@ -12378,7 +12378,7 @@ static PyObject *__pyx_f_5_cdec_14HypergraphNode_init(struct __pyx_obj_5_cdec_Hy
  */
   __pyx_v_self->node = (&(__pyx_v_hg->nodes_[__pyx_v_i]));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":253
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":253
  *         self.hg = hg
  *         self.node = &hg.nodes_[i]
  *         return self             # <<<<<<<<<<<<<<
@@ -12409,7 +12409,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphNode_8in_edges_1__get__(PyObject *_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":256
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":256
  * 
  *     property in_edges:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -12473,7 +12473,7 @@ static PyObject *__pyx_gb_5_cdec_14HypergraphNode_8in_edges_2generator12(__pyx_G
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 256; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":258
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":258
  *         def __get__(self):
  *             cdef unsigned i
  *             for i in range(self.node.in_edges_.size()):             # <<<<<<<<<<<<<<
@@ -12484,7 +12484,7 @@ static PyObject *__pyx_gb_5_cdec_14HypergraphNode_8in_edges_2generator12(__pyx_G
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":259
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":259
  *             cdef unsigned i
  *             for i in range(self.node.in_edges_.size()):
  *                 yield HypergraphEdge().init(self.hg, self.node.in_edges_[i])             # <<<<<<<<<<<<<<
@@ -12536,7 +12536,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphNode_9out_edges_1__get__(PyObject *
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":262
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":262
  * 
  *     property out_edges:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -12600,7 +12600,7 @@ static PyObject *__pyx_gb_5_cdec_14HypergraphNode_9out_edges_2generator13(__pyx_
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 262; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":264
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":264
  *         def __get__(self):
  *             cdef unsigned i
  *             for i in range(self.node.out_edges_.size()):             # <<<<<<<<<<<<<<
@@ -12611,7 +12611,7 @@ static PyObject *__pyx_gb_5_cdec_14HypergraphNode_9out_edges_2generator13(__pyx_
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":265
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":265
  *             cdef unsigned i
  *             for i in range(self.node.out_edges_.size()):
  *                 yield HypergraphEdge().init(self.hg, self.node.out_edges_[i])             # <<<<<<<<<<<<<<
@@ -12662,7 +12662,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphNode_4span_1__get__(PyObject *__pyx
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":268
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":268
  * 
  *     property span:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -12680,7 +12680,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode_4span___get__(struct __pyx_obj
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":269
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":269
  *     property span:
  *         def __get__(self):
  *             return next(self.in_edges).span             # <<<<<<<<<<<<<<
@@ -12724,7 +12724,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphNode_3cat_1__get__(PyObject *__pyx_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":272
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":272
  * 
  *     property cat:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -12742,7 +12742,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode_3cat___get__(struct __pyx_obj_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":273
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":273
  *     property cat:
  *         def __get__(self):
  *             if self.node.cat_:             # <<<<<<<<<<<<<<
@@ -12751,7 +12751,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode_3cat___get__(struct __pyx_obj_
  */
   if (__pyx_v_self->node->cat_) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":274
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":274
  *         def __get__(self):
  *             if self.node.cat_:
  *                 return str(TDConvert(-self.node.cat_).c_str())             # <<<<<<<<<<<<<<
@@ -12806,7 +12806,7 @@ static PyObject *__pyx_pw_5_cdec_14HypergraphNode_1__richcmp__(PyObject *__pyx_v
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":276
+/* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":276
  *                 return str(TDConvert(-self.node.cat_).c_str())
  * 
  *     def __richcmp__(HypergraphNode x, HypergraphNode y, int op):             # <<<<<<<<<<<<<<
@@ -12824,7 +12824,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode___richcmp__(struct __pyx_obj_5
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__richcmp__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":279
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":279
  *         if op == 2: # ==
  *             return x.node == y.node
  *         elif op == 3: # !=             # <<<<<<<<<<<<<<
@@ -12833,7 +12833,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode___richcmp__(struct __pyx_obj_5
  */
   switch (__pyx_v_op) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":277
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":277
  * 
  *     def __richcmp__(HypergraphNode x, HypergraphNode y, int op):
  *         if op == 2: # ==             # <<<<<<<<<<<<<<
@@ -12842,7 +12842,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode___richcmp__(struct __pyx_obj_5
  */
     case 2:
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":278
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":278
  *     def __richcmp__(HypergraphNode x, HypergraphNode y, int op):
  *         if op == 2: # ==
  *             return x.node == y.node             # <<<<<<<<<<<<<<
@@ -12857,7 +12857,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode___richcmp__(struct __pyx_obj_5
     goto __pyx_L0;
     break;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":279
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":279
  *         if op == 2: # ==
  *             return x.node == y.node
  *         elif op == 3: # !=             # <<<<<<<<<<<<<<
@@ -12866,7 +12866,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode___richcmp__(struct __pyx_obj_5
  */
     case 3:
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":280
+    /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":280
  *             return x.node == y.node
  *         elif op == 3: # !=
  *             return not (x == y)             # <<<<<<<<<<<<<<
@@ -12884,7 +12884,7 @@ static PyObject *__pyx_pf_5_cdec_14HypergraphNode___richcmp__(struct __pyx_obj_5
     break;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":281
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":281
  *         elif op == 3: # !=
  *             return not (x == y)
  *         raise NotImplemented('comparison not implemented for HypergraphNode')             # <<<<<<<<<<<<<<
@@ -12921,7 +12921,7 @@ static int __pyx_pw_5_cdec_7Lattice_1__cinit__(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":6
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":6
  *     cdef lattice.Lattice* lattice
  * 
  *     def __cinit__(self):             # <<<<<<<<<<<<<<
@@ -12934,7 +12934,7 @@ static int __pyx_pf_5_cdec_7Lattice___cinit__(struct __pyx_obj_5_cdec_Lattice *_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":7
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":7
  * 
  *     def __cinit__(self):
  *         self.lattice = new lattice.Lattice()             # <<<<<<<<<<<<<<
@@ -12999,7 +12999,7 @@ static int __pyx_pw_5_cdec_7Lattice_3__init__(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":9
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":9
  *         self.lattice = new lattice.Lattice()
  * 
  *     def __init__(self, inp):             # <<<<<<<<<<<<<<
@@ -13024,7 +13024,7 @@ static int __pyx_pf_5_cdec_7Lattice_2__init__(struct __pyx_obj_5_cdec_Lattice *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__init__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":12
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":12
  *         """Lattice(tuple) -> Lattice from node list.
  *         Lattice(string) -> Lattice from PLF representation."""
  *         if isinstance(inp, tuple):             # <<<<<<<<<<<<<<
@@ -13034,7 +13034,7 @@ static int __pyx_pf_5_cdec_7Lattice_2__init__(struct __pyx_obj_5_cdec_Lattice *_
   __pyx_t_1 = PyTuple_Check(__pyx_v_inp); 
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":13
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":13
  *         Lattice(string) -> Lattice from PLF representation."""
  *         if isinstance(inp, tuple):
  *             self.lattice.resize(len(inp))             # <<<<<<<<<<<<<<
@@ -13044,7 +13044,7 @@ static int __pyx_pf_5_cdec_7Lattice_2__init__(struct __pyx_obj_5_cdec_Lattice *_
     __pyx_t_2 = PyObject_Length(__pyx_v_inp); if (unlikely(__pyx_t_2 == -1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 13; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_self->lattice->resize(__pyx_t_2);
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":14
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":14
  *         if isinstance(inp, tuple):
  *             self.lattice.resize(len(inp))
  *             for i, arcs in enumerate(inp):             # <<<<<<<<<<<<<<
@@ -13099,7 +13099,7 @@ static int __pyx_pf_5_cdec_7Lattice_2__init__(struct __pyx_obj_5_cdec_Lattice *_
       __pyx_t_3 = __pyx_t_6;
       __pyx_t_6 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":15
+      /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":15
  *             self.lattice.resize(len(inp))
  *             for i, arcs in enumerate(inp):
  *                 self[i] = arcs             # <<<<<<<<<<<<<<
@@ -13113,7 +13113,7 @@ static int __pyx_pf_5_cdec_7Lattice_2__init__(struct __pyx_obj_5_cdec_Lattice *_
     goto __pyx_L3;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":16
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":16
  *             for i, arcs in enumerate(inp):
  *                 self[i] = arcs
  *         elif isinstance(inp, basestring):             # <<<<<<<<<<<<<<
@@ -13123,7 +13123,7 @@ static int __pyx_pf_5_cdec_7Lattice_2__init__(struct __pyx_obj_5_cdec_Lattice *_
   __pyx_t_1 = PyObject_IsInstance(__pyx_v_inp, __pyx_builtin_basestring); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 16; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":17
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":17
  *                 self[i] = arcs
  *         elif isinstance(inp, basestring):
  *             lattice.ConvertTextOrPLF(as_str(inp), self.lattice)             # <<<<<<<<<<<<<<
@@ -13139,7 +13139,7 @@ static int __pyx_pf_5_cdec_7Lattice_2__init__(struct __pyx_obj_5_cdec_Lattice *_
   }
   /*else*/ {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":19
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":19
  *             lattice.ConvertTextOrPLF(as_str(inp), self.lattice)
  *         else:
  *             raise TypeError('cannot create lattice from %s' % type(inp))             # <<<<<<<<<<<<<<
@@ -13186,7 +13186,7 @@ static void __pyx_pw_5_cdec_7Lattice_5__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":21
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":21
  *             raise TypeError('cannot create lattice from %s' % type(inp))
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -13198,7 +13198,7 @@ static void __pyx_pf_5_cdec_7Lattice_4__dealloc__(CYTHON_UNUSED struct __pyx_obj
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":22
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":22
  * 
  *     def __dealloc__(self):
  *         del self.lattice             # <<<<<<<<<<<<<<
@@ -13231,7 +13231,7 @@ static PyObject *__pyx_pw_5_cdec_7Lattice_7__getitem__(PyObject *__pyx_v_self, P
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":24
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":24
  *         del self.lattice
  * 
  *     def __getitem__(self, int index):             # <<<<<<<<<<<<<<
@@ -13261,7 +13261,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__getitem__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":25
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":25
  * 
  *     def __getitem__(self, int index):
  *         if not 0 <= index < len(self):             # <<<<<<<<<<<<<<
@@ -13276,7 +13276,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
   __pyx_t_3 = (!__pyx_t_1);
   if (__pyx_t_3) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":26
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":26
  *     def __getitem__(self, int index):
  *         if not 0 <= index < len(self):
  *             raise IndexError('lattice index out of range')             # <<<<<<<<<<<<<<
@@ -13292,7 +13292,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":27
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":27
  *         if not 0 <= index < len(self):
  *             raise IndexError('lattice index out of range')
  *         arcs = []             # <<<<<<<<<<<<<<
@@ -13304,7 +13304,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
   __pyx_v_arcs = ((PyObject*)__pyx_t_4);
   __pyx_t_4 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":28
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":28
  *             raise IndexError('lattice index out of range')
  *         arcs = []
  *         cdef vector[lattice.LatticeArc] arc_vector = self.lattice[0][index]             # <<<<<<<<<<<<<<
@@ -13313,7 +13313,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
  */
   __pyx_v_arc_vector = ((__pyx_v_self->lattice[0])[__pyx_v_index]);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":31
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":31
  *         cdef lattice.LatticeArc* arc
  *         cdef unsigned i
  *         for i in range(arc_vector.size()):             # <<<<<<<<<<<<<<
@@ -13324,7 +13324,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
   for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
     __pyx_v_i = __pyx_t_6;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":32
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":32
  *         cdef unsigned i
  *         for i in range(arc_vector.size()):
  *             arc = &arc_vector[i]             # <<<<<<<<<<<<<<
@@ -13333,7 +13333,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
  */
     __pyx_v_arc = (&(__pyx_v_arc_vector[__pyx_v_i]));
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":33
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":33
  *         for i in range(arc_vector.size()):
  *             arc = &arc_vector[i]
  *             label = unicode(TDConvert(arc.label).c_str(), 'utf8')             # <<<<<<<<<<<<<<
@@ -13357,7 +13357,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
     __pyx_v_label = ((PyObject*)__pyx_t_4);
     __pyx_t_4 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":34
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":34
  *             arc = &arc_vector[i]
  *             label = unicode(TDConvert(arc.label).c_str(), 'utf8')
  *             arcs.append((label, arc.cost, arc.dist2next))             # <<<<<<<<<<<<<<
@@ -13383,7 +13383,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_6__getitem__(struct __pyx_obj_5_cdec_L
     __Pyx_DECREF(((PyObject *)__pyx_t_8)); __pyx_t_8 = 0;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":35
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":35
  *             label = unicode(TDConvert(arc.label).c_str(), 'utf8')
  *             arcs.append((label, arc.cost, arc.dist2next))
  *         return tuple(arcs)             # <<<<<<<<<<<<<<
@@ -13439,7 +13439,7 @@ static int __pyx_pw_5_cdec_7Lattice_9__setitem__(PyObject *__pyx_v_self, PyObjec
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":37
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":37
  *         return tuple(arcs)
  * 
  *     def __setitem__(self, int index, tuple arcs):             # <<<<<<<<<<<<<<
@@ -13473,7 +13473,7 @@ static int __pyx_pf_5_cdec_7Lattice_8__setitem__(struct __pyx_obj_5_cdec_Lattice
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__setitem__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":38
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":38
  * 
  *     def __setitem__(self, int index, tuple arcs):
  *         if not 0 <= index < len(self):             # <<<<<<<<<<<<<<
@@ -13488,7 +13488,7 @@ static int __pyx_pf_5_cdec_7Lattice_8__setitem__(struct __pyx_obj_5_cdec_Lattice
   __pyx_t_3 = (!__pyx_t_1);
   if (__pyx_t_3) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":39
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":39
  *     def __setitem__(self, int index, tuple arcs):
  *         if not 0 <= index < len(self):
  *             raise IndexError('lattice index out of range')             # <<<<<<<<<<<<<<
@@ -13504,7 +13504,7 @@ static int __pyx_pf_5_cdec_7Lattice_8__setitem__(struct __pyx_obj_5_cdec_Lattice
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":41
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":41
  *             raise IndexError('lattice index out of range')
  *         cdef lattice.LatticeArc* arc
  *         for (label, cost, dist2next) in arcs:             # <<<<<<<<<<<<<<
@@ -13591,7 +13591,7 @@ static int __pyx_pf_5_cdec_7Lattice_8__setitem__(struct __pyx_obj_5_cdec_Lattice
     __pyx_v_dist2next = __pyx_t_8;
     __pyx_t_8 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":42
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":42
  *         cdef lattice.LatticeArc* arc
  *         for (label, cost, dist2next) in arcs:
  *             label_str = as_str(label)             # <<<<<<<<<<<<<<
@@ -13604,7 +13604,7 @@ static int __pyx_pf_5_cdec_7Lattice_8__setitem__(struct __pyx_obj_5_cdec_Lattice
     __pyx_v_label_str = ((PyObject*)__pyx_t_5);
     __pyx_t_5 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":43
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":43
  *         for (label, cost, dist2next) in arcs:
  *             label_str = as_str(label)
  *             arc = new lattice.LatticeArc(TDConvert(label_str), cost, dist2next)             # <<<<<<<<<<<<<<
@@ -13616,7 +13616,7 @@ static int __pyx_pf_5_cdec_7Lattice_8__setitem__(struct __pyx_obj_5_cdec_Lattice
     __pyx_t_13 = __Pyx_PyInt_AsInt(__pyx_v_dist2next); if (unlikely((__pyx_t_13 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 43; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_arc = new LatticeArc(TD::Convert(__pyx_t_11), __pyx_t_12, __pyx_t_13);
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":44
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":44
  *             label_str = as_str(label)
  *             arc = new lattice.LatticeArc(TDConvert(label_str), cost, dist2next)
  *             self.lattice[0][index].push_back(arc[0])             # <<<<<<<<<<<<<<
@@ -13625,7 +13625,7 @@ static int __pyx_pf_5_cdec_7Lattice_8__setitem__(struct __pyx_obj_5_cdec_Lattice
  */
     ((__pyx_v_self->lattice[0])[__pyx_v_index]).push_back((__pyx_v_arc[0]));
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":45
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":45
  *             arc = new lattice.LatticeArc(TDConvert(label_str), cost, dist2next)
  *             self.lattice[0][index].push_back(arc[0])
  *             del arc             # <<<<<<<<<<<<<<
@@ -13667,7 +13667,7 @@ static Py_ssize_t __pyx_pw_5_cdec_7Lattice_11__len__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":47
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":47
  *             del arc
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -13680,7 +13680,7 @@ static Py_ssize_t __pyx_pf_5_cdec_7Lattice_10__len__(struct __pyx_obj_5_cdec_Lat
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":48
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":48
  * 
  *     def __len__(self):
  *         return self.lattice.size()             # <<<<<<<<<<<<<<
@@ -13707,7 +13707,7 @@ static PyObject *__pyx_pw_5_cdec_7Lattice_13__str__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":50
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":50
  *         return self.lattice.size()
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -13725,7 +13725,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_12__str__(struct __pyx_obj_5_cdec_Latt
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__str__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":51
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":51
  * 
  *     def __str__(self):
  *         return str(hypergraph.AsPLF(self.lattice[0], True).c_str())             # <<<<<<<<<<<<<<
@@ -13771,7 +13771,7 @@ static PyObject *__pyx_pw_5_cdec_7Lattice_15__unicode__(PyObject *__pyx_v_self,
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":53
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":53
  *         return str(hypergraph.AsPLF(self.lattice[0], True).c_str())
  * 
  *     def __unicode__(self):             # <<<<<<<<<<<<<<
@@ -13789,7 +13789,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_14__unicode__(struct __pyx_obj_5_cdec_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__unicode__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":54
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":54
  * 
  *     def __unicode__(self):
  *         return unicode(str(self), 'utf8')             # <<<<<<<<<<<<<<
@@ -13845,7 +13845,7 @@ static PyObject *__pyx_pw_5_cdec_7Lattice_17__iter__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":56
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":56
  *         return unicode(str(self), 'utf8')
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -13908,7 +13908,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_18generator14(__pyx_GeneratorObject *_
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 56; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":58
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":58
  *     def __iter__(self):
  *         cdef unsigned i
  *         for i in range(len(self)):             # <<<<<<<<<<<<<<
@@ -13919,7 +13919,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_18generator14(__pyx_GeneratorObject *_
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":59
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":59
  *         cdef unsigned i
  *         for i in range(len(self)):
  *             yield self[i]             # <<<<<<<<<<<<<<
@@ -13980,7 +13980,7 @@ static PyObject *__pyx_pw_5_cdec_7Lattice_5todot_1lines(PyObject *__pyx_self, CY
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":63
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":63
  *     def todot(self):
  *         """lattice.todot() -> Representation of the lattice in GraphViz dot format."""
  *         def lines():             # <<<<<<<<<<<<<<
@@ -14057,7 +14057,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 63; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":64
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":64
  *         """lattice.todot() -> Representation of the lattice in GraphViz dot format."""
  *         def lines():
  *             yield 'digraph lattice {'             # <<<<<<<<<<<<<<
@@ -14074,7 +14074,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
   __pyx_L4_resume_from_yield:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":65
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":65
  *         def lines():
  *             yield 'digraph lattice {'
  *             yield 'rankdir = LR;'             # <<<<<<<<<<<<<<
@@ -14091,7 +14091,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
   __pyx_L5_resume_from_yield:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 65; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":66
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":66
  *             yield 'digraph lattice {'
  *             yield 'rankdir = LR;'
  *             yield 'node [shape=circle];'             # <<<<<<<<<<<<<<
@@ -14108,7 +14108,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
   __pyx_L6_resume_from_yield:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 66; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":67
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":67
  *             yield 'rankdir = LR;'
  *             yield 'node [shape=circle];'
  *             for i in range(len(self)):             # <<<<<<<<<<<<<<
@@ -14171,7 +14171,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
     __pyx_cur_scope->__pyx_v_i = __pyx_t_1;
     __pyx_t_1 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":68
+    /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":68
  *             yield 'node [shape=circle];'
  *             for i in range(len(self)):
  *                 for label, weight, delta in self[i]:             # <<<<<<<<<<<<<<
@@ -14289,7 +14289,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
       __pyx_cur_scope->__pyx_v_delta = __pyx_t_10;
       __pyx_t_10 = 0;
 
-      /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":69
+      /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":69
  *             for i in range(len(self)):
  *                 for label, weight, delta in self[i]:
  *                     yield '%d -> %d [label="%s"];' % (i, i+delta, label.replace('"', '\\"'))             # <<<<<<<<<<<<<<
@@ -14349,7 +14349,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
   }
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":70
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":70
  *                 for label, weight, delta in self[i]:
  *                     yield '%d -> %d [label="%s"];' % (i, i+delta, label.replace('"', '\\"'))
  *             yield '%d [shape=doublecircle]' % len(self)             # <<<<<<<<<<<<<<
@@ -14375,7 +14375,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
   __pyx_L14_resume_from_yield:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 70; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":71
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":71
  *                     yield '%d -> %d [label="%s"];' % (i, i+delta, label.replace('"', '\\"'))
  *             yield '%d [shape=doublecircle]' % len(self)
  *             yield '}'             # <<<<<<<<<<<<<<
@@ -14410,7 +14410,7 @@ static PyObject *__pyx_gb_5_cdec_7Lattice_5todot_2generator20(__pyx_GeneratorObj
   return NULL;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":61
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":61
  *             yield self[i]
  * 
  *     def todot(self):             # <<<<<<<<<<<<<<
@@ -14440,7 +14440,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_19todot(struct __pyx_obj_5_cdec_Lattic
   __Pyx_INCREF((PyObject *)__pyx_cur_scope->__pyx_v_self);
   __Pyx_GIVEREF((PyObject *)__pyx_cur_scope->__pyx_v_self);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":63
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":63
  *     def todot(self):
  *         """lattice.todot() -> Representation of the lattice in GraphViz dot format."""
  *         def lines():             # <<<<<<<<<<<<<<
@@ -14452,7 +14452,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_19todot(struct __pyx_obj_5_cdec_Lattic
   __pyx_v_lines = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":72
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":72
  *             yield '%d [shape=doublecircle]' % len(self)
  *             yield '}'
  *         return '\n'.join(lines()).encode('utf8')             # <<<<<<<<<<<<<<
@@ -14511,7 +14511,7 @@ static PyObject *__pyx_pw_5_cdec_7Lattice_22as_hypergraph(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":74
+/* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":74
  *         return '\n'.join(lines()).encode('utf8')
  * 
  *     def as_hypergraph(self):             # <<<<<<<<<<<<<<
@@ -14532,7 +14532,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_21as_hypergraph(struct __pyx_obj_5_cde
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("as_hypergraph", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":76
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":76
  *     def as_hypergraph(self):
  *         """lattice.as_hypergraph() -> Hypergraph representation of the lattice."""
  *         cdef Hypergraph result = Hypergraph.__new__(Hypergraph)             # <<<<<<<<<<<<<<
@@ -14545,7 +14545,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_21as_hypergraph(struct __pyx_obj_5_cde
   __pyx_v_result = ((struct __pyx_obj_5_cdec_Hypergraph *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":77
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":77
  *         """lattice.as_hypergraph() -> Hypergraph representation of the lattice."""
  *         cdef Hypergraph result = Hypergraph.__new__(Hypergraph)
  *         result.hg = new hypergraph.Hypergraph()             # <<<<<<<<<<<<<<
@@ -14554,7 +14554,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_21as_hypergraph(struct __pyx_obj_5_cde
  */
   __pyx_v_result->hg = new Hypergraph();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":78
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":78
  *         cdef Hypergraph result = Hypergraph.__new__(Hypergraph)
  *         result.hg = new hypergraph.Hypergraph()
  *         cdef bytes plf = str(self)             # <<<<<<<<<<<<<<
@@ -14573,7 +14573,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_21as_hypergraph(struct __pyx_obj_5_cde
   __pyx_v_plf = ((PyObject*)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":79
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":79
  *         result.hg = new hypergraph.Hypergraph()
  *         cdef bytes plf = str(self)
  *         hypergraph.ReadFromPLF(plf, result.hg)             # <<<<<<<<<<<<<<
@@ -14582,7 +14582,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_21as_hypergraph(struct __pyx_obj_5_cde
   __pyx_t_3 = __pyx_convert_string_from_py_(((PyObject *)__pyx_v_plf)); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 79; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   HypergraphIO::ReadFromPLF(__pyx_t_3, __pyx_v_result->hg);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":80
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":80
  *         cdef bytes plf = str(self)
  *         hypergraph.ReadFromPLF(plf, result.hg)
  *         return result             # <<<<<<<<<<<<<<
@@ -14607,7 +14607,7 @@ static PyObject *__pyx_pf_5_cdec_7Lattice_21as_hypergraph(struct __pyx_obj_5_cde
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":3
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":3
  * cimport mteval
  * 
  * cdef SufficientStats as_stats(x, y):             # <<<<<<<<<<<<<<
@@ -14629,7 +14629,7 @@ static struct __pyx_obj_5_cdec_SufficientStats *__pyx_f_5_cdec_as_stats(PyObject
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("as_stats", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":4
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":4
  * 
  * cdef SufficientStats as_stats(x, y):
  *     if isinstance(x, SufficientStats):             # <<<<<<<<<<<<<<
@@ -14639,7 +14639,7 @@ static struct __pyx_obj_5_cdec_SufficientStats *__pyx_f_5_cdec_as_stats(PyObject
   __pyx_t_1 = __Pyx_TypeCheck(__pyx_v_x, ((PyObject*)__pyx_ptype_5_cdec_SufficientStats)); 
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":5
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":5
  * cdef SufficientStats as_stats(x, y):
  *     if isinstance(x, SufficientStats):
  *         return x             # <<<<<<<<<<<<<<
@@ -14654,7 +14654,7 @@ static struct __pyx_obj_5_cdec_SufficientStats *__pyx_f_5_cdec_as_stats(PyObject
     goto __pyx_L3;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":6
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":6
  *     if isinstance(x, SufficientStats):
  *         return x
  *     elif x == 0 and isinstance(y, SufficientStats):             # <<<<<<<<<<<<<<
@@ -14672,7 +14672,7 @@ static struct __pyx_obj_5_cdec_SufficientStats *__pyx_f_5_cdec_as_stats(PyObject
   }
   if (__pyx_t_4) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":7
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":7
  *         return x
  *     elif x == 0 and isinstance(y, SufficientStats):
  *         stats = SufficientStats()             # <<<<<<<<<<<<<<
@@ -14684,7 +14684,7 @@ static struct __pyx_obj_5_cdec_SufficientStats *__pyx_f_5_cdec_as_stats(PyObject
     __pyx_v_stats = ((struct __pyx_obj_5_cdec_SufficientStats *)__pyx_t_2);
     __pyx_t_2 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":8
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":8
  *     elif x == 0 and isinstance(y, SufficientStats):
  *         stats = SufficientStats()
  *         stats.stats = new mteval.SufficientStats()             # <<<<<<<<<<<<<<
@@ -14693,7 +14693,7 @@ static struct __pyx_obj_5_cdec_SufficientStats *__pyx_f_5_cdec_as_stats(PyObject
  */
     __pyx_v_stats->stats = new SufficientStats();
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":9
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":9
  *         stats = SufficientStats()
  *         stats.stats = new mteval.SufficientStats()
  *         stats.metric = (<SufficientStats> y).metric             # <<<<<<<<<<<<<<
@@ -14703,7 +14703,7 @@ static struct __pyx_obj_5_cdec_SufficientStats *__pyx_f_5_cdec_as_stats(PyObject
     __pyx_t_5 = ((struct __pyx_obj_5_cdec_SufficientStats *)__pyx_v_y)->metric;
     __pyx_v_stats->metric = __pyx_t_5;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":10
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":10
  *         stats.stats = new mteval.SufficientStats()
  *         stats.metric = (<SufficientStats> y).metric
  *         return stats             # <<<<<<<<<<<<<<
@@ -14742,7 +14742,7 @@ static PyObject *__pyx_pw_5_cdec_9Candidate_5words_1__get__(PyObject *__pyx_v_se
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":17
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":17
  * 
  *     property words:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -14761,7 +14761,7 @@ static PyObject *__pyx_pf_5_cdec_9Candidate_5words___get__(struct __pyx_obj_5_cd
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":18
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":18
  *     property words:
  *         def __get__(self):
  *             return unicode(GetString(self.candidate.ewords).c_str(), encoding='utf8')             # <<<<<<<<<<<<<<
@@ -14812,7 +14812,7 @@ static PyObject *__pyx_pw_5_cdec_9Candidate_4fmap_1__get__(PyObject *__pyx_v_sel
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":21
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":21
  * 
  *     property fmap:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -14830,7 +14830,7 @@ static PyObject *__pyx_pf_5_cdec_9Candidate_4fmap___get__(struct __pyx_obj_5_cde
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":22
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":22
  *     property fmap:
  *         def __get__(self):
  *             cdef SparseVector fmap = SparseVector.__new__(SparseVector)             # <<<<<<<<<<<<<<
@@ -14843,7 +14843,7 @@ static PyObject *__pyx_pf_5_cdec_9Candidate_4fmap___get__(struct __pyx_obj_5_cde
   __pyx_v_fmap = ((struct __pyx_obj_5_cdec_SparseVector *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":23
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":23
  *         def __get__(self):
  *             cdef SparseVector fmap = SparseVector.__new__(SparseVector)
  *             fmap.vector = new FastSparseVector[weight_t](self.candidate.fmap)             # <<<<<<<<<<<<<<
@@ -14852,7 +14852,7 @@ static PyObject *__pyx_pf_5_cdec_9Candidate_4fmap___get__(struct __pyx_obj_5_cde
  */
   __pyx_v_fmap->vector = new FastSparseVector<weight_t>(__pyx_v_self->candidate->fmap);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":24
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":24
  *             cdef SparseVector fmap = SparseVector.__new__(SparseVector)
  *             fmap.vector = new FastSparseVector[weight_t](self.candidate.fmap)
  *             return fmap             # <<<<<<<<<<<<<<
@@ -14888,7 +14888,7 @@ static PyObject *__pyx_pw_5_cdec_9Candidate_5score_1__get__(PyObject *__pyx_v_se
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":14
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":14
  * cdef class Candidate:
  *     cdef mteval.const_Candidate* candidate
  *     cdef public float score             # <<<<<<<<<<<<<<
@@ -14964,7 +14964,7 @@ static void __pyx_pw_5_cdec_15SufficientStats_1__dealloc__(PyObject *__pyx_v_sel
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":30
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":30
  *     cdef mteval.EvaluationMetric* metric
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -14976,7 +14976,7 @@ static void __pyx_pf_5_cdec_15SufficientStats___dealloc__(CYTHON_UNUSED struct _
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   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":31
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":31
  * 
  *     def __dealloc__(self):
  *         del self.stats             # <<<<<<<<<<<<<<
@@ -14999,7 +14999,7 @@ static PyObject *__pyx_pw_5_cdec_15SufficientStats_5score_1__get__(PyObject *__p
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":34
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":34
  * 
  *     property score:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -15016,7 +15016,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_5score___get__(struct __pyx_o
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   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":35
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":35
  *     property score:
  *         def __get__(self):
  *             return self.metric.ComputeScore(self.stats[0])             # <<<<<<<<<<<<<<
@@ -15053,7 +15053,7 @@ static PyObject *__pyx_pw_5_cdec_15SufficientStats_6detail_1__get__(PyObject *__
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":38
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":38
  * 
  *     property detail:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -15071,7 +15071,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_6detail___get__(struct __pyx_
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   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":39
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":39
  *     property detail:
  *         def __get__(self):
  *             return str(self.metric.DetailedScore(self.stats[0]).c_str())             # <<<<<<<<<<<<<<
@@ -15117,7 +15117,7 @@ static Py_ssize_t __pyx_pw_5_cdec_15SufficientStats_3__len__(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":41
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":41
  *             return str(self.metric.DetailedScore(self.stats[0]).c_str())
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -15130,7 +15130,7 @@ static Py_ssize_t __pyx_pf_5_cdec_15SufficientStats_2__len__(struct __pyx_obj_5_
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   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":42
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":42
  * 
  *     def __len__(self):
  *         return self.stats.size()             # <<<<<<<<<<<<<<
@@ -15158,7 +15158,7 @@ static PyObject *__pyx_pw_5_cdec_15SufficientStats_5__iter__(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":44
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":44
  *         return self.stats.size()
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -15222,7 +15222,7 @@ static PyObject *__pyx_gb_5_cdec_15SufficientStats_6generator15(__pyx_GeneratorO
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":45
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":45
  * 
  *     def __iter__(self):
  *         for i in range(len(self)):             # <<<<<<<<<<<<<<
@@ -15281,7 +15281,7 @@ static PyObject *__pyx_gb_5_cdec_15SufficientStats_6generator15(__pyx_GeneratorO
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
     __pyx_t_2 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":46
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":46
  *     def __iter__(self):
  *         for i in range(len(self)):
  *             yield self[i]             # <<<<<<<<<<<<<<
@@ -15345,7 +15345,7 @@ static PyObject *__pyx_pw_5_cdec_15SufficientStats_8__getitem__(PyObject *__pyx_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":48
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":48
  *             yield self[i]
  * 
  *     def __getitem__(self, int index):             # <<<<<<<<<<<<<<
@@ -15365,7 +15365,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_7__getitem__(struct __pyx_obj
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-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":49
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":49
  * 
  *     def __getitem__(self, int index):
  *         if not 0 <= index < len(self):             # <<<<<<<<<<<<<<
@@ -15380,7 +15380,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_7__getitem__(struct __pyx_obj
   __pyx_t_3 = (!__pyx_t_1);
   if (__pyx_t_3) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":50
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":50
  *     def __getitem__(self, int index):
  *         if not 0 <= index < len(self):
  *             raise IndexError('sufficient stats vector index out of range')             # <<<<<<<<<<<<<<
@@ -15396,7 +15396,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_7__getitem__(struct __pyx_obj
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":51
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":51
  *         if not 0 <= index < len(self):
  *             raise IndexError('sufficient stats vector index out of range')
  *         return self.stats[0][index]             # <<<<<<<<<<<<<<
@@ -15438,7 +15438,7 @@ static PyObject *__pyx_pw_5_cdec_15SufficientStats_10__iadd__(PyObject *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":53
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":53
  *         return self.stats[0][index]
  * 
  *     def __iadd__(SufficientStats self, SufficientStats other):             # <<<<<<<<<<<<<<
@@ -15451,7 +15451,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_9__iadd__(struct __pyx_obj_5_
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   __Pyx_RefNannySetupContext("__iadd__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":54
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":54
  * 
  *     def __iadd__(SufficientStats self, SufficientStats other):
  *         self.stats[0] += other.stats[0]             # <<<<<<<<<<<<<<
@@ -15460,7 +15460,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_9__iadd__(struct __pyx_obj_5_
  */
   (__pyx_v_self->stats[0]) += (__pyx_v_other->stats[0]);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":55
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":55
  *     def __iadd__(SufficientStats self, SufficientStats other):
  *         self.stats[0] += other.stats[0]
  *         return self             # <<<<<<<<<<<<<<
@@ -15490,7 +15490,7 @@ static PyObject *__pyx_pw_5_cdec_15SufficientStats_12__add__(PyObject *__pyx_v_x
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":57
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":57
  *         return self
  * 
  *     def __add__(x, y):             # <<<<<<<<<<<<<<
@@ -15511,7 +15511,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_11__add__(PyObject *__pyx_v_x
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-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":58
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":58
  * 
  *     def __add__(x, y):
  *         cdef SufficientStats sx = as_stats(x, y)             # <<<<<<<<<<<<<<
@@ -15523,7 +15523,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_11__add__(PyObject *__pyx_v_x
   __pyx_v_sx = ((struct __pyx_obj_5_cdec_SufficientStats *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":59
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":59
  *     def __add__(x, y):
  *         cdef SufficientStats sx = as_stats(x, y)
  *         cdef SufficientStats sy = as_stats(y, x)             # <<<<<<<<<<<<<<
@@ -15535,7 +15535,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_11__add__(PyObject *__pyx_v_x
   __pyx_v_sy = ((struct __pyx_obj_5_cdec_SufficientStats *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":60
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":60
  *         cdef SufficientStats sx = as_stats(x, y)
  *         cdef SufficientStats sy = as_stats(y, x)
  *         cdef SufficientStats result = SufficientStats()             # <<<<<<<<<<<<<<
@@ -15547,7 +15547,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_11__add__(PyObject *__pyx_v_x
   __pyx_v_result = ((struct __pyx_obj_5_cdec_SufficientStats *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":61
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":61
  *         cdef SufficientStats sy = as_stats(y, x)
  *         cdef SufficientStats result = SufficientStats()
  *         result.stats = new mteval.SufficientStats(mteval.add(sx.stats[0], sy.stats[0]))             # <<<<<<<<<<<<<<
@@ -15556,7 +15556,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_11__add__(PyObject *__pyx_v_x
  */
   __pyx_v_result->stats = new SufficientStats(operator+((__pyx_v_sx->stats[0]), (__pyx_v_sy->stats[0])));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":62
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":62
  *         cdef SufficientStats result = SufficientStats()
  *         result.stats = new mteval.SufficientStats(mteval.add(sx.stats[0], sy.stats[0]))
  *         result.metric = sx.metric             # <<<<<<<<<<<<<<
@@ -15566,7 +15566,7 @@ static PyObject *__pyx_pf_5_cdec_15SufficientStats_11__add__(PyObject *__pyx_v_x
   __pyx_t_2 = __pyx_v_sx->metric;
   __pyx_v_result->metric = __pyx_t_2;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":63
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":63
  *         result.stats = new mteval.SufficientStats(mteval.add(sx.stats[0], sy.stats[0]))
  *         result.metric = sx.metric
  *         return result             # <<<<<<<<<<<<<<
@@ -15645,7 +15645,7 @@ static int __pyx_pw_5_cdec_12CandidateSet_1__cinit__(PyObject *__pyx_v_self, PyO
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":70
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":70
  *     cdef mteval.CandidateSet* cs
  * 
  *     def __cinit__(self, SegmentEvaluator evaluator):             # <<<<<<<<<<<<<<
@@ -15659,7 +15659,7 @@ static int __pyx_pf_5_cdec_12CandidateSet___cinit__(struct __pyx_obj_5_cdec_Cand
   EvaluationMetric *__pyx_t_1;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":71
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":71
  * 
  *     def __cinit__(self, SegmentEvaluator evaluator):
  *         self.scorer = new shared_ptr[mteval.SegmentEvaluator](evaluator.scorer[0])             # <<<<<<<<<<<<<<
@@ -15668,7 +15668,7 @@ static int __pyx_pf_5_cdec_12CandidateSet___cinit__(struct __pyx_obj_5_cdec_Cand
  */
   __pyx_v_self->scorer = new boost::shared_ptr<SegmentEvaluator>((__pyx_v_evaluator->scorer[0]));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":72
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":72
  *     def __cinit__(self, SegmentEvaluator evaluator):
  *         self.scorer = new shared_ptr[mteval.SegmentEvaluator](evaluator.scorer[0])
  *         self.metric = evaluator.metric             # <<<<<<<<<<<<<<
@@ -15678,7 +15678,7 @@ static int __pyx_pf_5_cdec_12CandidateSet___cinit__(struct __pyx_obj_5_cdec_Cand
   __pyx_t_1 = __pyx_v_evaluator->metric;
   __pyx_v_self->metric = __pyx_t_1;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":73
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":73
  *         self.scorer = new shared_ptr[mteval.SegmentEvaluator](evaluator.scorer[0])
  *         self.metric = evaluator.metric
  *         self.cs = new mteval.CandidateSet()             # <<<<<<<<<<<<<<
@@ -15701,7 +15701,7 @@ static void __pyx_pw_5_cdec_12CandidateSet_3__dealloc__(PyObject *__pyx_v_self)
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":75
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":75
  *         self.cs = new mteval.CandidateSet()
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -15713,7 +15713,7 @@ static void __pyx_pf_5_cdec_12CandidateSet_2__dealloc__(CYTHON_UNUSED struct __p
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":76
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":76
  * 
  *     def __dealloc__(self):
  *         del self.scorer             # <<<<<<<<<<<<<<
@@ -15722,7 +15722,7 @@ static void __pyx_pf_5_cdec_12CandidateSet_2__dealloc__(CYTHON_UNUSED struct __p
  */
   delete __pyx_v_self->scorer;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":77
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":77
  *     def __dealloc__(self):
  *         del self.scorer
  *         del self.cs             # <<<<<<<<<<<<<<
@@ -15745,7 +15745,7 @@ static Py_ssize_t __pyx_pw_5_cdec_12CandidateSet_5__len__(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":79
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":79
  *         del self.cs
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -15758,7 +15758,7 @@ static Py_ssize_t __pyx_pf_5_cdec_12CandidateSet_4__len__(struct __pyx_obj_5_cde
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":80
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":80
  * 
  *     def __len__(self):
  *         return self.cs.size()             # <<<<<<<<<<<<<<
@@ -15795,7 +15795,7 @@ static PyObject *__pyx_pw_5_cdec_12CandidateSet_7__getitem__(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":82
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":82
  *         return self.cs.size()
  * 
  *     def __getitem__(self,int k):             # <<<<<<<<<<<<<<
@@ -15815,7 +15815,7 @@ static PyObject *__pyx_pf_5_cdec_12CandidateSet_6__getitem__(struct __pyx_obj_5_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__getitem__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":83
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":83
  * 
  *     def __getitem__(self,int k):
  *         if not 0 <= k < self.cs.size():             # <<<<<<<<<<<<<<
@@ -15829,7 +15829,7 @@ static PyObject *__pyx_pf_5_cdec_12CandidateSet_6__getitem__(struct __pyx_obj_5_
   __pyx_t_2 = (!__pyx_t_1);
   if (__pyx_t_2) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":84
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":84
  *     def __getitem__(self,int k):
  *         if not 0 <= k < self.cs.size():
  *             raise IndexError('candidate set index out of range')             # <<<<<<<<<<<<<<
@@ -15845,7 +15845,7 @@ static PyObject *__pyx_pf_5_cdec_12CandidateSet_6__getitem__(struct __pyx_obj_5_
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":85
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":85
  *         if not 0 <= k < self.cs.size():
  *             raise IndexError('candidate set index out of range')
  *         cdef Candidate candidate = Candidate()             # <<<<<<<<<<<<<<
@@ -15857,7 +15857,7 @@ static PyObject *__pyx_pf_5_cdec_12CandidateSet_6__getitem__(struct __pyx_obj_5_
   __pyx_v_candidate = ((struct __pyx_obj_5_cdec_Candidate *)__pyx_t_3);
   __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":86
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":86
  *             raise IndexError('candidate set index out of range')
  *         cdef Candidate candidate = Candidate()
  *         candidate.candidate = &self.cs[0][k]             # <<<<<<<<<<<<<<
@@ -15866,7 +15866,7 @@ static PyObject *__pyx_pf_5_cdec_12CandidateSet_6__getitem__(struct __pyx_obj_5_
  */
   __pyx_v_candidate->candidate = (&((__pyx_v_self->cs[0])[__pyx_v_k]));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":87
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":87
  *         cdef Candidate candidate = Candidate()
  *         candidate.candidate = &self.cs[0][k]
  *         candidate.score = self.metric.ComputeScore(self.cs[0][k].eval_feats)             # <<<<<<<<<<<<<<
@@ -15875,7 +15875,7 @@ static PyObject *__pyx_pf_5_cdec_12CandidateSet_6__getitem__(struct __pyx_obj_5_
  */
   __pyx_v_candidate->score = __pyx_v_self->metric->ComputeScore(((__pyx_v_self->cs[0])[__pyx_v_k]).eval_feats);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":88
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":88
  *         candidate.candidate = &self.cs[0][k]
  *         candidate.score = self.metric.ComputeScore(self.cs[0][k].eval_feats)
  *         return candidate             # <<<<<<<<<<<<<<
@@ -15912,7 +15912,7 @@ static PyObject *__pyx_pw_5_cdec_12CandidateSet_9__iter__(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":90
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":90
  *         return candidate
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -15975,7 +15975,7 @@ static PyObject *__pyx_gb_5_cdec_12CandidateSet_10generator16(__pyx_GeneratorObj
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":92
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":92
  *     def __iter__(self):
  *         cdef unsigned i
  *         for i in range(len(self)):             # <<<<<<<<<<<<<<
@@ -15986,7 +15986,7 @@ static PyObject *__pyx_gb_5_cdec_12CandidateSet_10generator16(__pyx_GeneratorObj
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_cur_scope->__pyx_v_i = __pyx_t_2;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":93
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":93
  *         cdef unsigned i
  *         for i in range(len(self)):
  *             yield self[i]             # <<<<<<<<<<<<<<
@@ -16084,7 +16084,7 @@ static PyObject *__pyx_pw_5_cdec_12CandidateSet_12add_kbest(PyObject *__pyx_v_se
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":95
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":95
  *             yield self[i]
  * 
  *     def add_kbest(self, Hypergraph hypergraph, unsigned k):             # <<<<<<<<<<<<<<
@@ -16097,7 +16097,7 @@ static PyObject *__pyx_pf_5_cdec_12CandidateSet_11add_kbest(struct __pyx_obj_5_c
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("add_kbest", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":98
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":98
  *         """cs.add_kbest(Hypergraph hypergraph, int k) -> Extract K-best hypotheses
  *         from the hypergraph and add them to the candidate set."""
  *         self.cs.AddKBestCandidates(hypergraph.hg[0], k, self.scorer.get())             # <<<<<<<<<<<<<<
@@ -16121,7 +16121,7 @@ static void __pyx_pw_5_cdec_16SegmentEvaluator_1__dealloc__(PyObject *__pyx_v_se
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":104
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":104
  *     cdef mteval.EvaluationMetric* metric
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -16133,7 +16133,7 @@ static void __pyx_pf_5_cdec_16SegmentEvaluator___dealloc__(CYTHON_UNUSED struct
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":105
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":105
  * 
  *     def __dealloc__(self):
  *         del self.scorer             # <<<<<<<<<<<<<<
@@ -16157,7 +16157,7 @@ static PyObject *__pyx_pw_5_cdec_16SegmentEvaluator_3evaluate(PyObject *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":107
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":107
  *         del self.scorer
  * 
  *     def evaluate(self, sentence):             # <<<<<<<<<<<<<<
@@ -16179,7 +16179,7 @@ static PyObject *__pyx_pf_5_cdec_16SegmentEvaluator_2evaluate(struct __pyx_obj_5
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("evaluate", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":110
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":110
  *         """se.evaluate(sentence) -> SufficientStats for the given hypothesis."""
  *         cdef vector[WordID] hyp
  *         cdef SufficientStats sf = SufficientStats()             # <<<<<<<<<<<<<<
@@ -16191,7 +16191,7 @@ static PyObject *__pyx_pf_5_cdec_16SegmentEvaluator_2evaluate(struct __pyx_obj_5
   __pyx_v_sf = ((struct __pyx_obj_5_cdec_SufficientStats *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":111
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":111
  *         cdef vector[WordID] hyp
  *         cdef SufficientStats sf = SufficientStats()
  *         sf.metric = self.metric             # <<<<<<<<<<<<<<
@@ -16201,7 +16201,7 @@ static PyObject *__pyx_pf_5_cdec_16SegmentEvaluator_2evaluate(struct __pyx_obj_5
   __pyx_t_2 = __pyx_v_self->metric;
   __pyx_v_sf->metric = __pyx_t_2;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":112
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":112
  *         cdef SufficientStats sf = SufficientStats()
  *         sf.metric = self.metric
  *         sf.stats = new mteval.SufficientStats()             # <<<<<<<<<<<<<<
@@ -16210,7 +16210,7 @@ static PyObject *__pyx_pf_5_cdec_16SegmentEvaluator_2evaluate(struct __pyx_obj_5
  */
   __pyx_v_sf->stats = new SufficientStats();
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":113
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":113
  *         sf.metric = self.metric
  *         sf.stats = new mteval.SufficientStats()
  *         ConvertSentence(as_str(sentence.strip()), &hyp)             # <<<<<<<<<<<<<<
@@ -16229,7 +16229,7 @@ static PyObject *__pyx_pf_5_cdec_16SegmentEvaluator_2evaluate(struct __pyx_obj_5
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   TD::ConvertSentence(__pyx_t_4, (&__pyx_v_hyp));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":114
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":114
  *         sf.stats = new mteval.SufficientStats()
  *         ConvertSentence(as_str(sentence.strip()), &hyp)
  *         self.scorer.get().Evaluate(hyp, sf.stats)             # <<<<<<<<<<<<<<
@@ -16238,7 +16238,7 @@ static PyObject *__pyx_pf_5_cdec_16SegmentEvaluator_2evaluate(struct __pyx_obj_5
  */
   __pyx_v_self->scorer->get()->Evaluate(__pyx_v_hyp, __pyx_v_sf->stats);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":115
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":115
  *         ConvertSentence(as_str(sentence.strip()), &hyp)
  *         self.scorer.get().Evaluate(hyp, sf.stats)
  *         return sf             # <<<<<<<<<<<<<<
@@ -16276,7 +16276,7 @@ static PyObject *__pyx_pw_5_cdec_16SegmentEvaluator_5candidate_set(PyObject *__p
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":117
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":117
  *         return sf
  * 
  *     def candidate_set(self):             # <<<<<<<<<<<<<<
@@ -16294,7 +16294,7 @@ static PyObject *__pyx_pf_5_cdec_16SegmentEvaluator_4candidate_set(struct __pyx_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("candidate_set", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":119
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":119
  *     def candidate_set(self):
  *         """se.candidate_set() -> Candidate set using this segment evaluator for scoring."""
  *         return CandidateSet(self)             # <<<<<<<<<<<<<<
@@ -16338,7 +16338,7 @@ static int __pyx_pw_5_cdec_6Scorer_1__cinit__(PyObject *__pyx_v_self, PyObject *
     static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__name,0};
     PyObject* values[1] = {0};
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":125
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":125
  *     cdef mteval.EvaluationMetric* metric
  * 
  *     def __cinit__(self, bytes name=None):             # <<<<<<<<<<<<<<
@@ -16403,7 +16403,7 @@ static int __pyx_pf_5_cdec_6Scorer___cinit__(struct __pyx_obj_5_cdec_Scorer *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":126
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":126
  * 
  *     def __cinit__(self, bytes name=None):
  *         if name:             # <<<<<<<<<<<<<<
@@ -16413,7 +16413,7 @@ static int __pyx_pf_5_cdec_6Scorer___cinit__(struct __pyx_obj_5_cdec_Scorer *__p
   __pyx_t_1 = (((PyObject *)__pyx_v_name) != Py_None) && (PyBytes_GET_SIZE(((PyObject *)__pyx_v_name)) != 0);
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":127
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":127
  *     def __cinit__(self, bytes name=None):
  *         if name:
  *             self.name = new string(name)             # <<<<<<<<<<<<<<
@@ -16429,7 +16429,7 @@ static int __pyx_pf_5_cdec_6Scorer___cinit__(struct __pyx_obj_5_cdec_Scorer *__p
     }
     __pyx_v_self->name = __pyx_t_3;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":128
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":128
  *         if name:
  *             self.name = new string(name)
  *             self.metric = mteval.MetricInstance(self.name[0])             # <<<<<<<<<<<<<<
@@ -16460,7 +16460,7 @@ static void __pyx_pw_5_cdec_6Scorer_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":130
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":130
  *             self.metric = mteval.MetricInstance(self.name[0])
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -16472,7 +16472,7 @@ static void __pyx_pf_5_cdec_6Scorer_2__dealloc__(CYTHON_UNUSED struct __pyx_obj_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":131
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":131
  * 
  *     def __dealloc__(self):
  *         del self.name             # <<<<<<<<<<<<<<
@@ -16531,7 +16531,7 @@ static PyObject *__pyx_pw_5_cdec_6Scorer_5__call__(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":133
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":133
  *         del self.name
  * 
  *     def __call__(self, refs):             # <<<<<<<<<<<<<<
@@ -16562,7 +16562,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
   __Pyx_RefNannySetupContext("__call__", 0);
   __Pyx_INCREF(__pyx_v_refs);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":134
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":134
  * 
  *     def __call__(self, refs):
  *         if isinstance(refs, basestring):             # <<<<<<<<<<<<<<
@@ -16572,7 +16572,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
   __pyx_t_1 = PyObject_IsInstance(__pyx_v_refs, __pyx_builtin_basestring); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 134; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":135
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":135
  *     def __call__(self, refs):
  *         if isinstance(refs, basestring):
  *             refs = [refs]             # <<<<<<<<<<<<<<
@@ -16591,7 +16591,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
   }
   __pyx_L3:;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":136
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":136
  *         if isinstance(refs, basestring):
  *             refs = [refs]
  *         cdef vector[vector[WordID]]* refsv = new vector[vector[WordID]]()             # <<<<<<<<<<<<<<
@@ -16606,7 +16606,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
   }
   __pyx_v_refsv = __pyx_t_3;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":138
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":138
  *         cdef vector[vector[WordID]]* refsv = new vector[vector[WordID]]()
  *         cdef vector[WordID]* refv
  *         for ref in refs:             # <<<<<<<<<<<<<<
@@ -16651,7 +16651,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
     __pyx_v_ref = __pyx_t_6;
     __pyx_t_6 = 0;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":139
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":139
  *         cdef vector[WordID]* refv
  *         for ref in refs:
  *             refv = new vector[WordID]()             # <<<<<<<<<<<<<<
@@ -16666,7 +16666,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
     }
     __pyx_v_refv = __pyx_t_7;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":140
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":140
  *         for ref in refs:
  *             refv = new vector[WordID]()
  *             ConvertSentence(as_str(ref.strip()), refv)             # <<<<<<<<<<<<<<
@@ -16685,7 +16685,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
     __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
     TD::ConvertSentence(__pyx_t_9, __pyx_v_refv);
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":141
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":141
  *             refv = new vector[WordID]()
  *             ConvertSentence(as_str(ref.strip()), refv)
  *             refsv.push_back(refv[0])             # <<<<<<<<<<<<<<
@@ -16694,7 +16694,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
  */
     __pyx_v_refsv->push_back((__pyx_v_refv[0]));
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":142
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":142
  *             ConvertSentence(as_str(ref.strip()), refv)
  *             refsv.push_back(refv[0])
  *             del refv             # <<<<<<<<<<<<<<
@@ -16705,7 +16705,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
   }
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":144
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":144
  *             del refv
  *         cdef unsigned i
  *         cdef SegmentEvaluator evaluator = SegmentEvaluator()             # <<<<<<<<<<<<<<
@@ -16717,7 +16717,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
   __pyx_v_evaluator = ((struct __pyx_obj_5_cdec_SegmentEvaluator *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":145
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":145
  *         cdef unsigned i
  *         cdef SegmentEvaluator evaluator = SegmentEvaluator()
  *         evaluator.metric = self.metric             # <<<<<<<<<<<<<<
@@ -16727,7 +16727,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
   __pyx_t_10 = __pyx_v_self->metric;
   __pyx_v_evaluator->metric = __pyx_t_10;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":146
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":146
  *         cdef SegmentEvaluator evaluator = SegmentEvaluator()
  *         evaluator.metric = self.metric
  *         evaluator.scorer = new shared_ptr[mteval.SegmentEvaluator](             # <<<<<<<<<<<<<<
@@ -16736,7 +16736,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
  */
   __pyx_v_evaluator->scorer = new boost::shared_ptr<SegmentEvaluator>(__pyx_v_self->metric->CreateSegmentEvaluator((__pyx_v_refsv[0])));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":148
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":148
  *         evaluator.scorer = new shared_ptr[mteval.SegmentEvaluator](
  *                 self.metric.CreateSegmentEvaluator(refsv[0]))
  *         del refsv # in theory should not delete but store in SegmentEvaluator             # <<<<<<<<<<<<<<
@@ -16745,7 +16745,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_4__call__(struct __pyx_obj_5_cdec_Score
  */
   delete __pyx_v_refsv;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":149
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":149
  *                 self.metric.CreateSegmentEvaluator(refsv[0]))
  *         del refsv # in theory should not delete but store in SegmentEvaluator
  *         return evaluator             # <<<<<<<<<<<<<<
@@ -16785,7 +16785,7 @@ static PyObject *__pyx_pw_5_cdec_6Scorer_7__str__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":151
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":151
  *         return evaluator
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -16803,7 +16803,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_6__str__(struct __pyx_obj_5_cdec_Scorer
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__str__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":152
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":152
  * 
  *     def __str__(self):
  *         return str(self.name.c_str())             # <<<<<<<<<<<<<<
@@ -16838,7 +16838,7 @@ static PyObject *__pyx_pf_5_cdec_6Scorer_6__str__(struct __pyx_obj_5_cdec_Scorer
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":154
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":154
  *         return str(self.name.c_str())
  * 
  * cdef float _compute_score(void* metric_, mteval.SufficientStats* stats):             # <<<<<<<<<<<<<<
@@ -16864,7 +16864,7 @@ static float __pyx_f_5_cdec__compute_score(void *__pyx_v_metric_, SufficientStat
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("_compute_score", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":155
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":155
  * 
  * cdef float _compute_score(void* metric_, mteval.SufficientStats* stats):
  *     cdef Metric metric = <Metric> metric_             # <<<<<<<<<<<<<<
@@ -16874,7 +16874,7 @@ static float __pyx_f_5_cdec__compute_score(void *__pyx_v_metric_, SufficientStat
   __Pyx_INCREF(((PyObject *)((struct __pyx_obj_5_cdec_Metric *)__pyx_v_metric_)));
   __pyx_v_metric = ((struct __pyx_obj_5_cdec_Metric *)__pyx_v_metric_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":156
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":156
  * cdef float _compute_score(void* metric_, mteval.SufficientStats* stats):
  *     cdef Metric metric = <Metric> metric_
  *     cdef list ss = []             # <<<<<<<<<<<<<<
@@ -16886,7 +16886,7 @@ static float __pyx_f_5_cdec__compute_score(void *__pyx_v_metric_, SufficientStat
   __pyx_v_ss = ((PyObject*)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":158
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":158
  *     cdef list ss = []
  *     cdef unsigned i
  *     for i in range(stats.size()):             # <<<<<<<<<<<<<<
@@ -16897,7 +16897,7 @@ static float __pyx_f_5_cdec__compute_score(void *__pyx_v_metric_, SufficientStat
   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
     __pyx_v_i = __pyx_t_3;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":159
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":159
  *     cdef unsigned i
  *     for i in range(stats.size()):
  *         ss.append(stats[0][i])             # <<<<<<<<<<<<<<
@@ -16910,7 +16910,7 @@ static float __pyx_f_5_cdec__compute_score(void *__pyx_v_metric_, SufficientStat
     __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":160
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":160
  *     for i in range(stats.size()):
  *         ss.append(stats[0][i])
  *     return metric.score(ss)             # <<<<<<<<<<<<<<
@@ -16948,7 +16948,7 @@ static float __pyx_f_5_cdec__compute_score(void *__pyx_v_metric_, SufficientStat
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":162
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":162
  *     return metric.score(ss)
  * 
  * cdef void _compute_sufficient_stats(void* metric_,             # <<<<<<<<<<<<<<
@@ -16975,7 +16975,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
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   __Pyx_RefNannySetupContext("_compute_sufficient_stats", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":166
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":166
  *         vector[string]* refs,
  *         mteval.SufficientStats* out):
  *     cdef Metric metric = <Metric> metric_             # <<<<<<<<<<<<<<
@@ -16985,7 +16985,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
   __Pyx_INCREF(((PyObject *)((struct __pyx_obj_5_cdec_Metric *)__pyx_v_metric_)));
   __pyx_v_metric = ((struct __pyx_obj_5_cdec_Metric *)__pyx_v_metric_);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":167
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":167
  *         mteval.SufficientStats* out):
  *     cdef Metric metric = <Metric> metric_
  *     cdef list refs_ = []             # <<<<<<<<<<<<<<
@@ -16997,7 +16997,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
   __pyx_v_refs_ = ((PyObject*)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":169
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":169
  *     cdef list refs_ = []
  *     cdef unsigned i
  *     for i in range(refs.size()):             # <<<<<<<<<<<<<<
@@ -17008,7 +17008,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
     __pyx_v_i = __pyx_t_3;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":170
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":170
  *     cdef unsigned i
  *     for i in range(refs.size()):
  *         refs_.append(str(refs[0][i].c_str()))             # <<<<<<<<<<<<<<
@@ -17029,7 +17029,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
     __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   }
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":171
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":171
  *     for i in range(refs.size()):
  *         refs_.append(str(refs[0][i].c_str()))
  *     cdef list ss = metric.evaluate(str(hyp.c_str()), refs_)             # <<<<<<<<<<<<<<
@@ -17064,7 +17064,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
   __pyx_v_ss = ((PyObject*)__pyx_t_4);
   __pyx_t_4 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":172
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":172
  *         refs_.append(str(refs[0][i].c_str()))
  *     cdef list ss = metric.evaluate(str(hyp.c_str()), refs_)
  *     out.fields.resize(len(ss))             # <<<<<<<<<<<<<<
@@ -17078,7 +17078,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
   __pyx_t_7 = PyList_GET_SIZE(((PyObject *)__pyx_v_ss)); if (unlikely(__pyx_t_7 == -1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_out->fields.resize(__pyx_t_7);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":173
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":173
  *     cdef list ss = metric.evaluate(str(hyp.c_str()), refs_)
  *     out.fields.resize(len(ss))
  *     for i in range(len(ss)):             # <<<<<<<<<<<<<<
@@ -17093,7 +17093,7 @@ static void __pyx_f_5_cdec__compute_sufficient_stats(void *__pyx_v_metric_, std:
   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_7; __pyx_t_3+=1) {
     __pyx_v_i = __pyx_t_3;
 
-    /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":174
+    /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":174
  *     out.fields.resize(len(ss))
  *     for i in range(len(ss)):
  *         out.fields[i] = ss[i]             # <<<<<<<<<<<<<<
@@ -17138,7 +17138,7 @@ static int __pyx_pw_5_cdec_6Metric_1__cinit__(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":178
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":178
  * cdef class Metric:
  *     cdef Scorer scorer
  *     def __cinit__(self):             # <<<<<<<<<<<<<<
@@ -17159,7 +17159,7 @@ static int __pyx_pf_5_cdec_6Metric___cinit__(struct __pyx_obj_5_cdec_Metric *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":179
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":179
  *     cdef Scorer scorer
  *     def __cinit__(self):
  *         self.scorer = Scorer()             # <<<<<<<<<<<<<<
@@ -17174,7 +17174,7 @@ static int __pyx_pf_5_cdec_6Metric___cinit__(struct __pyx_obj_5_cdec_Metric *__p
   __pyx_v_self->scorer = ((struct __pyx_obj_5_cdec_Scorer *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":180
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":180
  *     def __cinit__(self):
  *         self.scorer = Scorer()
  *         cdef bytes class_name = self.__class__.__name__             # <<<<<<<<<<<<<<
@@ -17190,7 +17190,7 @@ static int __pyx_pf_5_cdec_6Metric___cinit__(struct __pyx_obj_5_cdec_Metric *__p
   __pyx_v_class_name = ((PyObject*)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":181
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":181
  *         self.scorer = Scorer()
  *         cdef bytes class_name = self.__class__.__name__
  *         self.scorer.name = new string(class_name)             # <<<<<<<<<<<<<<
@@ -17206,7 +17206,7 @@ static int __pyx_pf_5_cdec_6Metric___cinit__(struct __pyx_obj_5_cdec_Metric *__p
   }
   __pyx_v_self->scorer->name = __pyx_t_4;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":182
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":182
  *         cdef bytes class_name = self.__class__.__name__
  *         self.scorer.name = new string(class_name)
  *         self.scorer.metric = mteval.PyMetricInstance(self.scorer.name[0],             # <<<<<<<<<<<<<<
@@ -17275,7 +17275,7 @@ static PyObject *__pyx_pw_5_cdec_6Metric_3__call__(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":185
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":185
  *                 <void*> self, _compute_sufficient_stats, _compute_score)
  * 
  *     def __call__(self, refs):             # <<<<<<<<<<<<<<
@@ -17293,7 +17293,7 @@ static PyObject *__pyx_pf_5_cdec_6Metric_2__call__(struct __pyx_obj_5_cdec_Metri
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__call__", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":186
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":186
  * 
  *     def __call__(self, refs):
  *         return self.scorer(refs)             # <<<<<<<<<<<<<<
@@ -17337,7 +17337,7 @@ static PyObject *__pyx_pw_5_cdec_6Metric_5score(PyObject *__pyx_v_stats, CYTHON_
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":188
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":188
  *         return self.scorer(refs)
  * 
  *     def score(SufficientStats stats):             # <<<<<<<<<<<<<<
@@ -17350,7 +17350,7 @@ static PyObject *__pyx_pf_5_cdec_6Metric_4score(CYTHON_UNUSED struct __pyx_obj_5
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("score", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":189
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":189
  * 
  *     def score(SufficientStats stats):
  *         return 0             # <<<<<<<<<<<<<<
@@ -17425,7 +17425,7 @@ static PyObject *__pyx_pw_5_cdec_6Metric_7evaluate(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":191
+/* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":191
  *         return 0
  * 
  *     def evaluate(self, hyp, refs):             # <<<<<<<<<<<<<<
@@ -17442,7 +17442,7 @@ static PyObject *__pyx_pf_5_cdec_6Metric_6evaluate(CYTHON_UNUSED struct __pyx_ob
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("evaluate", 0);
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":192
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":192
  * 
  *     def evaluate(self, hyp, refs):
  *         return []             # <<<<<<<<<<<<<<
@@ -28921,7 +28921,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_2);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_2));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/vectors.pxi":95
+  /* "/usr0/home/cdyer/cdec-merge/python/src/vectors.pxi":95
  *         elif op == 3: # !=
  *             return not (x == y)
  *         raise NotImplemented('comparison not implemented for SparseVector')             # <<<<<<<<<<<<<<
@@ -28932,7 +28932,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_5);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_5));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":6
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":6
  * 
  * def _phrase(phrase):
  *     return ' '.join(w.encode('utf8') if isinstance(w, unicode) else str(w) for w in phrase)             # <<<<<<<<<<<<<<
@@ -28943,7 +28943,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_6);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_6));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":226
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":226
  *                 trule = convert_rule(trule)
  *             elif not isinstance(trule, TRule):
  *                 raise ValueError('the grammar should contain TRule objects')             # <<<<<<<<<<<<<<
@@ -28953,7 +28953,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_14);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_14));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":244
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":244
  *         elif op == 3: # !=
  *             return not (x == y)
  *         raise NotImplemented('comparison not implemented for HypergraphEdge')             # <<<<<<<<<<<<<<
@@ -28964,7 +28964,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_19);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_19));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/hypergraph.pxi":281
+  /* "/usr0/home/cdyer/cdec-merge/python/src/hypergraph.pxi":281
  *         elif op == 3: # !=
  *             return not (x == y)
  *         raise NotImplemented('comparison not implemented for HypergraphNode')             # <<<<<<<<<<<<<<
@@ -28973,7 +28973,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_21);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_21));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":26
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":26
  *     def __getitem__(self, int index):
  *         if not 0 <= index < len(self):
  *             raise IndexError('lattice index out of range')             # <<<<<<<<<<<<<<
@@ -28984,7 +28984,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_24);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_24));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":39
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":39
  *     def __setitem__(self, int index, tuple arcs):
  *         if not 0 <= index < len(self):
  *             raise IndexError('lattice index out of range')             # <<<<<<<<<<<<<<
@@ -28995,7 +28995,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_25);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_25));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":69
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":69
  *             for i in range(len(self)):
  *                 for label, weight, delta in self[i]:
  *                     yield '%d -> %d [label="%s"];' % (i, i+delta, label.replace('"', '\\"'))             # <<<<<<<<<<<<<<
@@ -29006,7 +29006,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_32);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_32));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":63
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":63
  *     def todot(self):
  *         """lattice.todot() -> Representation of the lattice in GraphViz dot format."""
  *         def lines():             # <<<<<<<<<<<<<<
@@ -29018,7 +29018,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_35));
   __pyx_k_codeobj_36 = (PyObject*)__Pyx_PyCode_New(0, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_37, __pyx_n_s__lines, 63, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_36)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 63; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/lattice.pxi":72
+  /* "/usr0/home/cdyer/cdec-merge/python/src/lattice.pxi":72
  *             yield '%d [shape=doublecircle]' % len(self)
  *             yield '}'
  *         return '\n'.join(lines()).encode('utf8')             # <<<<<<<<<<<<<<
@@ -29029,7 +29029,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_40);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_40));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":50
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":50
  *     def __getitem__(self, int index):
  *         if not 0 <= index < len(self):
  *             raise IndexError('sufficient stats vector index out of range')             # <<<<<<<<<<<<<<
@@ -29040,7 +29040,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_42);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_42));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":84
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":84
  *     def __getitem__(self,int k):
  *         if not 0 <= k < self.cs.size():
  *             raise IndexError('candidate set index out of range')             # <<<<<<<<<<<<<<
@@ -29073,7 +29073,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_51);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_51));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":5
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":5
  * import cdec.sa._sa as _sa
  * 
  * def _phrase(phrase):             # <<<<<<<<<<<<<<
@@ -29085,7 +29085,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_55));
   __pyx_k_codeobj_56 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_55, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_57, __pyx_n_s___phrase, 5, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_56)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 5; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":194
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":194
  *         return []
  * 
  * BLEU = Scorer('IBM_BLEU')             # <<<<<<<<<<<<<<
@@ -29096,7 +29096,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_58);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_58));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":195
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":195
  * 
  * BLEU = Scorer('IBM_BLEU')
  * QCRI = Scorer('QCRI_BLEU')             # <<<<<<<<<<<<<<
@@ -29107,7 +29107,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_59);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_59));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":196
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":196
  * BLEU = Scorer('IBM_BLEU')
  * QCRI = Scorer('QCRI_BLEU')
  * TER = Scorer('TER')             # <<<<<<<<<<<<<<
@@ -29118,7 +29118,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_60);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_60));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":197
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":197
  * QCRI = Scorer('QCRI_BLEU')
  * TER = Scorer('TER')
  * CER = Scorer('CER')             # <<<<<<<<<<<<<<
@@ -29128,7 +29128,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GOTREF(__pyx_k_tuple_61);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_61));
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":198
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":198
  * TER = Scorer('TER')
  * CER = Scorer('CER')
  * SSK = Scorer('SSK')             # <<<<<<<<<<<<<<
@@ -29480,7 +29480,7 @@ PyMODINIT_FUNC PyInit__cdec(void)
   Py_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   /*--- Execution code ---*/
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":3
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":3
  * cimport grammar
  * cimport cdec.sa._sa as _sa
  * import cdec.sa._sa as _sa             # <<<<<<<<<<<<<<
@@ -29498,7 +29498,7 @@ PyMODINIT_FUNC PyInit__cdec(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s___sa, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 3; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/grammar.pxi":5
+  /* "/usr0/home/cdyer/cdec-merge/python/src/grammar.pxi":5
  * import cdec.sa._sa as _sa
  * 
  * def _phrase(phrase):             # <<<<<<<<<<<<<<
@@ -29510,7 +29510,7 @@ PyMODINIT_FUNC PyInit__cdec(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s___phrase, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 5; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":194
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":194
  *         return []
  * 
  * BLEU = Scorer('IBM_BLEU')             # <<<<<<<<<<<<<<
@@ -29522,7 +29522,7 @@ PyMODINIT_FUNC PyInit__cdec(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__BLEU, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 194; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":195
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":195
  * 
  * BLEU = Scorer('IBM_BLEU')
  * QCRI = Scorer('QCRI_BLEU')             # <<<<<<<<<<<<<<
@@ -29534,7 +29534,7 @@ PyMODINIT_FUNC PyInit__cdec(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__QCRI, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 195; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":196
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":196
  * BLEU = Scorer('IBM_BLEU')
  * QCRI = Scorer('QCRI_BLEU')
  * TER = Scorer('TER')             # <<<<<<<<<<<<<<
@@ -29546,7 +29546,7 @@ PyMODINIT_FUNC PyInit__cdec(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__TER, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 196; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":197
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":197
  * QCRI = Scorer('QCRI_BLEU')
  * TER = Scorer('TER')
  * CER = Scorer('CER')             # <<<<<<<<<<<<<<
@@ -29557,7 +29557,7 @@ PyMODINIT_FUNC PyInit__cdec(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__CER, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 197; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/jmflanig/tools/cdec-jflanig/python/src/mteval.pxi":198
+  /* "/usr0/home/cdyer/cdec-merge/python/src/mteval.pxi":198
  * TER = Scorer('TER')
  * CER = Scorer('CER')
  * SSK = Scorer('SSK')             # <<<<<<<<<<<<<<
diff --git a/python/src/sa/_sa.c b/python/src/sa/_sa.c
index 89445b45..80f5a440 100644
--- a/python/src/sa/_sa.c
+++ b/python/src/sa/_sa.c
@@ -1,4 +1,4 @@
-/* Generated by Cython 0.17.1 on Mon Jan 28 14:28:01 2013 */
+/* Generated by Cython 0.16 on Tue Apr 23 15:15:58 2013 */
 
 #define PY_SSIZE_T_CLEAN
 #include "Python.h"
@@ -11,6 +11,7 @@
 #ifndef offsetof
 #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
 #endif
+
 #if !defined(WIN32) && !defined(MS_WINDOWS)
   #ifndef __stdcall
     #define __stdcall
@@ -22,18 +23,22 @@
     #define __fastcall
   #endif
 #endif
+
 #ifndef DL_IMPORT
   #define DL_IMPORT(t) t
 #endif
 #ifndef DL_EXPORT
   #define DL_EXPORT(t) t
 #endif
+
 #ifndef PY_LONG_LONG
   #define PY_LONG_LONG LONG_LONG
 #endif
+
 #ifndef Py_HUGE_VAL
   #define Py_HUGE_VAL HUGE_VAL
 #endif
+
 #ifdef PYPY_VERSION
 #define CYTHON_COMPILING_IN_PYPY 1
 #define CYTHON_COMPILING_IN_CPYTHON 0
@@ -41,25 +46,28 @@
 #define CYTHON_COMPILING_IN_PYPY 0
 #define CYTHON_COMPILING_IN_CPYTHON 1
 #endif
+
+#if CYTHON_COMPILING_IN_PYPY
+  #define __Pyx_PyCFunction_Call PyObject_Call
+#else
+  #define __Pyx_PyCFunction_Call PyCFunction_Call
+#endif
+
 #if PY_VERSION_HEX < 0x02050000
   typedef int Py_ssize_t;
   #define PY_SSIZE_T_MAX INT_MAX
   #define PY_SSIZE_T_MIN INT_MIN
   #define PY_FORMAT_SIZE_T ""
-  #define CYTHON_FORMAT_SSIZE_T ""
   #define PyInt_FromSsize_t(z) PyInt_FromLong(z)
   #define PyInt_AsSsize_t(o)   __Pyx_PyInt_AsInt(o)
-  #define PyNumber_Index(o)    ((PyNumber_Check(o) && !PyFloat_Check(o)) ? PyNumber_Int(o) : \
-                                (PyErr_Format(PyExc_TypeError, \
-                                              "expected index value, got %.200s", Py_TYPE(o)->tp_name), \
-                                 (PyObject*)0))
-  #define PyIndex_Check(o)     (PyNumber_Check(o) && !PyFloat_Check(o) && !PyComplex_Check(o))
+  #define PyNumber_Index(o)    PyNumber_Int(o)
+  #define PyIndex_Check(o)     PyNumber_Check(o)
   #define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message)
   #define __PYX_BUILD_PY_SSIZE_T "i"
 #else
   #define __PYX_BUILD_PY_SSIZE_T "n"
-  #define CYTHON_FORMAT_SSIZE_T "z"
 #endif
+
 #if PY_VERSION_HEX < 0x02060000
   #define Py_REFCNT(ob) (((PyObject*)(ob))->ob_refcnt)
   #define Py_TYPE(ob)   (((PyObject*)(ob))->ob_type)
@@ -67,6 +75,7 @@
   #define PyVarObject_HEAD_INIT(type, size) \
           PyObject_HEAD_INIT(type) size,
   #define PyType_Modified(t)
+
   typedef struct {
      void *buf;
      PyObject *obj;
@@ -80,6 +89,7 @@
      Py_ssize_t *suboffsets;
      void *internal;
   } Py_buffer;
+
   #define PyBUF_SIMPLE 0
   #define PyBUF_WRITABLE 0x0001
   #define PyBUF_FORMAT 0x0004
@@ -91,9 +101,11 @@
   #define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES)
   #define PyBUF_RECORDS (PyBUF_STRIDES | PyBUF_FORMAT | PyBUF_WRITABLE)
   #define PyBUF_FULL (PyBUF_INDIRECT | PyBUF_FORMAT | PyBUF_WRITABLE)
+
   typedef int (*getbufferproc)(PyObject *, Py_buffer *, int);
   typedef void (*releasebufferproc)(PyObject *, Py_buffer *);
 #endif
+
 #if PY_MAJOR_VERSION < 3
   #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
   #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \
@@ -103,30 +115,31 @@
   #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \
           PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
 #endif
+
 #if PY_MAJOR_VERSION < 3 && PY_MINOR_VERSION < 6
   #define PyUnicode_FromString(s) PyUnicode_Decode(s, strlen(s), "UTF-8", "strict")
 #endif
+
 #if PY_MAJOR_VERSION >= 3
   #define Py_TPFLAGS_CHECKTYPES 0
   #define Py_TPFLAGS_HAVE_INDEX 0
 #endif
+
 #if (PY_VERSION_HEX < 0x02060000) || (PY_MAJOR_VERSION >= 3)
   #define Py_TPFLAGS_HAVE_NEWBUFFER 0
 #endif
-#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
+
+
+#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_GET_LENGTH)
   #define CYTHON_PEP393_ENABLED 1
-  #define __Pyx_PyUnicode_READY(op)       (likely(PyUnicode_IS_READY(op)) ? \
-                                              0 : _PyUnicode_Ready((PyObject *)(op)))
-  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_LENGTH(u)
+  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
   #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
-  #define __Pyx_PyUnicode_READ(k, d, i)   PyUnicode_READ(k, d, i)
 #else
   #define CYTHON_PEP393_ENABLED 0
-  #define __Pyx_PyUnicode_READY(op)       (0)
-  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_SIZE(u)
+  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
   #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
-  #define __Pyx_PyUnicode_READ(k, d, i)   ((k=k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
 #endif
+
 #if PY_MAJOR_VERSION >= 3
   #define PyBaseString_Type            PyUnicode_Type
   #define PyStringObject               PyUnicodeObject
@@ -134,6 +147,7 @@
   #define PyString_Check               PyUnicode_Check
   #define PyString_CheckExact          PyUnicode_CheckExact
 #endif
+
 #if PY_VERSION_HEX < 0x02060000
   #define PyBytesObject                PyStringObject
   #define PyBytes_Type                 PyString_Type
@@ -152,6 +166,7 @@
   #define PyBytes_Concat               PyString_Concat
   #define PyBytes_ConcatAndDel         PyString_ConcatAndDel
 #endif
+
 #if PY_VERSION_HEX < 0x02060000
   #define PySet_Check(obj)             PyObject_TypeCheck(obj, &PySet_Type)
   #define PyFrozenSet_Check(obj)       PyObject_TypeCheck(obj, &PyFrozenSet_Type)
@@ -159,7 +174,9 @@
 #ifndef PySet_CheckExact
   #define PySet_CheckExact(obj)        (Py_TYPE(obj) == &PySet_Type)
 #endif
+
 #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
+
 #if PY_MAJOR_VERSION >= 3
   #define PyIntObject                  PyLongObject
   #define PyInt_Type                   PyLong_Type
@@ -176,9 +193,11 @@
   #define PyInt_AsUnsignedLongMask     PyLong_AsUnsignedLongMask
   #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
 #endif
+
 #if PY_MAJOR_VERSION >= 3
   #define PyBoolObject                 PyLongObject
 #endif
+
 #if PY_VERSION_HEX < 0x03020000
   typedef long Py_hash_t;
   #define __Pyx_PyInt_FromHash_t PyInt_FromLong
@@ -187,6 +206,7 @@
   #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
   #define __Pyx_PyInt_AsHash_t   PyInt_AsSsize_t
 #endif
+
 #if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300)
   #define __Pyx_PySequence_GetSlice(obj, a, b) PySequence_GetSlice(obj, a, b)
   #define __Pyx_PySequence_SetSlice(obj, a, b, value) PySequence_SetSlice(obj, a, b, value)
@@ -205,9 +225,11 @@
         (likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \
             (PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1)))
 #endif
+
 #if PY_MAJOR_VERSION >= 3
   #define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
 #endif
+
 #if PY_VERSION_HEX < 0x02050000
   #define __Pyx_GetAttrString(o,n)   PyObject_GetAttrString((o),((char *)(n)))
   #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a))
@@ -217,6 +239,7 @@
   #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a))
   #define __Pyx_DelAttrString(o,n)   PyObject_DelAttrString((o),(n))
 #endif
+
 #if PY_VERSION_HEX < 0x02050000
   #define __Pyx_NAMESTR(n) ((char *)(n))
   #define __Pyx_DOCSTR(n)  ((char *)(n))
@@ -225,7 +248,6 @@
   #define __Pyx_DOCSTR(n)  (n)
 #endif
 
-
 #if PY_MAJOR_VERSION >= 3
   #define __Pyx_PyNumber_Divide(x,y)         PyNumber_TrueDivide(x,y)
   #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceTrueDivide(x,y)
@@ -307,11 +329,7 @@ static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
 static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject*);
 
-#if CYTHON_COMPILING_IN_CPYTHON
 #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
-#else
-#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
-#endif
 #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
 
 #ifdef __GNUC__
@@ -420,7 +438,7 @@ struct __pyx_t_3_sa__Trie_Node;
 struct __pyx_t_3_sa_match_node;
 struct __pyx_t_3_sa_Matching;
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":9
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":9
  * from libc.string cimport memset, strcpy
  * 
  * cdef struct _node:             # <<<<<<<<<<<<<<
@@ -434,7 +452,7 @@ struct __pyx_t_3_sa__node {
   int val;
 };
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":30
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":30
  * _init_lower_mask()
  * 
  * cdef struct _BitSet:             # <<<<<<<<<<<<<<
@@ -448,7 +466,7 @@ struct __pyx_t_3_sa__BitSet {
   int size;
 };
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":168
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":168
  *     return result
  * 
  * cdef struct _VEB:             # <<<<<<<<<<<<<<
@@ -465,7 +483,7 @@ struct __pyx_t_3_sa__VEB {
   void **bottom;
 };
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":10
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":10
  * cdef struct _Trie_Node    # forward decl
  * 
  * cdef struct _Trie_Edge:             # <<<<<<<<<<<<<<
@@ -479,7 +497,7 @@ struct __pyx_t_3_sa__Trie_Edge {
   struct __pyx_t_3_sa__Trie_Edge *smaller;
 };
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":8
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":8
  * from libc.string cimport memset, memcpy
  * 
  * cdef struct _Trie_Node    # forward decl             # <<<<<<<<<<<<<<
@@ -492,7 +510,7 @@ struct __pyx_t_3_sa__Trie_Node {
   int arr_len;
 };
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":76
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":76
  * 
  * # linked list structure for storing matches in BaselineRuleFactory
  * cdef struct match_node:             # <<<<<<<<<<<<<<
@@ -504,7 +522,7 @@ struct __pyx_t_3_sa_match_node {
   struct __pyx_t_3_sa_match_node *next;
 };
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":172
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":172
  * 
  * # struct used to encapsulate a single matching
  * cdef struct Matching:             # <<<<<<<<<<<<<<
@@ -519,7 +537,7 @@ struct __pyx_t_3_sa_Matching {
   int size;
 };
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":228
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":228
  * 
  * 
  * cdef class HieroCachingRuleFactory:             # <<<<<<<<<<<<<<
@@ -554,6 +572,7 @@ struct __pyx_obj_3_sa_HieroCachingRuleFactory {
   float by_slack_factor;
   PyObject *prev_norm_prefix;
   float extract_time;
+  float intersect_time;
   struct __pyx_obj_3_sa_SuffixArray *fsa;
   struct __pyx_obj_3_sa_DataArray *fda;
   struct __pyx_obj_3_sa_DataArray *eda;
@@ -577,7 +596,7 @@ struct __pyx_obj_3_sa_HieroCachingRuleFactory {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":118
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":118
  *             for arc in node for node in lattice)
  * 
  * def decode_sentence(lattice):             # <<<<<<<<<<<<<<
@@ -590,7 +609,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_9_decode_sentence {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":187
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":187
  *         fields = [sym_tostring(self.lhs), str(self.f), str(self.e), str(self.scores)]
  *         if self.word_alignments is not None:
  *             fields.append(' '.join('%d-%d' % a for a in self.alignments()))             # <<<<<<<<<<<<<<
@@ -607,7 +626,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_17_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1182
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1187
  *         # Online rule extraction and scoring
  *         if self.online:
  *             f_syms = tuple(word[0][0] for word in fwords)             # <<<<<<<<<<<<<<
@@ -624,7 +643,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_20_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":36
+/* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":36
  *         logger.info("LCP array completed")
  * 
  *     def compute_stats(self, int max_n):             # <<<<<<<<<<<<<<
@@ -655,7 +674,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_3_compute_stats {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":122
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":122
  * 
  * def encode_words(words):
  *     return tuple(sym_fromstring(word, True) for word in words)             # <<<<<<<<<<<<<<
@@ -672,7 +691,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_12_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/features.pxi":21
+/* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":21
  * 
  *     def __str__(self):
  *         return ' '.join('%s=%s' % feat for feat in self)             # <<<<<<<<<<<<<<
@@ -706,7 +725,7 @@ struct __pyx_obj_3_sa_IntList {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":340
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":340
  * 
  * 
  * cdef class VEBIterator:             # <<<<<<<<<<<<<<
@@ -720,7 +739,7 @@ struct __pyx_obj_3_sa_VEBIterator {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":47
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":47
  * 
  * 
  * cdef class BiLex:             # <<<<<<<<<<<<<<
@@ -741,7 +760,7 @@ struct __pyx_obj_3_sa_BiLex {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":354
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":354
  * 
  * 
  * cdef class VEB:             # <<<<<<<<<<<<<<
@@ -755,7 +774,7 @@ struct __pyx_obj_3_sa_VEB {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":121
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":121
  *     return tuple(sym_tostring(sym) for ((sym, _, _),) in lattice)
  * 
  * def encode_words(words):             # <<<<<<<<<<<<<<
@@ -768,7 +787,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_11_encode_words {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":5
+/* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":5
  * as k most frequent n-grams"""
  * 
  * cdef class LCP:             # <<<<<<<<<<<<<<
@@ -782,7 +801,7 @@ struct __pyx_obj_3_sa_LCP {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":9
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":9
  * from libc.string cimport memset, strcpy
  * 
  * cdef class DataArray:             # <<<<<<<<<<<<<<
@@ -801,7 +820,7 @@ struct __pyx_obj_3_sa_DataArray {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":100
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":100
  * 
  * 
  * cdef class BitSetIterator:             # <<<<<<<<<<<<<<
@@ -815,7 +834,7 @@ struct __pyx_obj_3_sa_BitSetIterator {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2110
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2115
  *         f = Phrase(f_sym)
  *         e = Phrase(e_sym)
  *         a = tuple(self.alignment.link(i, j) for (i, j) in links)             # <<<<<<<<<<<<<<
@@ -833,7 +852,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_23_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":188
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":188
  * 
  * 
  * cdef class Precomputation:             # <<<<<<<<<<<<<<
@@ -854,7 +873,7 @@ struct __pyx_obj_3_sa_Precomputation {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":190
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":190
  *         return ' ||| '.join(fields)
  * 
  *     def alignments(self):             # <<<<<<<<<<<<<<
@@ -871,7 +890,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_18_alignments {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":125
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":125
  * 
  * def decode_words(syms):
  *     return tuple(sym_tostring(sym) for sym in syms)             # <<<<<<<<<<<<<<
@@ -886,7 +905,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_14_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":6
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":6
  * from libc.stdio cimport FILE, fclose, fopen
  * 
  * cdef class SuffixArray:             # <<<<<<<<<<<<<<
@@ -902,7 +921,7 @@ struct __pyx_obj_3_sa_SuffixArray {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":183
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":183
  *         return self.f.arity()
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -915,7 +934,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_16___str__ {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":7
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":7
  * cdef int INDEX_MASK = (1<<INDEX_SHIFT)-1
  * 
  * cdef class Alphabet:             # <<<<<<<<<<<<<<
@@ -951,7 +970,7 @@ struct __pyx_obj_3_sa_Rule {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":112
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":112
  * def make_lattice(words):
  *     word_ids = (sym_fromstring(word, True) for word in words)
  *     return tuple(((word, None, 1), ) for word in word_ids)             # <<<<<<<<<<<<<<
@@ -968,7 +987,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_6_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1879
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1884
  *     # Aggregate stats from a training instance
  *     # (Extract rules, update counts)
  *     def add_instance(self, f_words, e_words, alignment):             # <<<<<<<<<<<<<<
@@ -991,7 +1010,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_21_add_instance {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":74
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":74
  *     def read_bitext(self, char* filename, int side):
  *         with gzip_or_text(filename) as fp:
  *             data = (line.split(' ||| ')[side] for line in fp)             # <<<<<<<<<<<<<<
@@ -1008,7 +1027,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_2_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":84
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":84
  * # in the suffix array; if discontiguous, it is the set of
  * # actual locations (packed into an array)
  * cdef class PhraseLocation:             # <<<<<<<<<<<<<<
@@ -1027,7 +1046,7 @@ struct __pyx_obj_3_sa_PhraseLocation {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":141
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":141
  *         return self.syms[i]
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -1042,7 +1061,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_15___iter__ {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2049
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2054
  * 
  *     # Create a rule from source, target, non-terminals, and alignments
  *     def form_rule(self, f_i, e_i, f_span, e_span, nt, al):             # <<<<<<<<<<<<<<
@@ -1056,7 +1075,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_22_form_rule {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2115
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2120
  *     # Rule string from rule
  *     def fmt_rule(self, f, e, a):
  *         a_str = ' '.join('{0}-{1}'.format(*self.alignment.unlink(packed)) for packed in a)             # <<<<<<<<<<<<<<
@@ -1073,7 +1092,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_25_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2114
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2119
  * 
  *     # Rule string from rule
  *     def fmt_rule(self, f, e, a):             # <<<<<<<<<<<<<<
@@ -1087,7 +1106,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_24_fmt_rule {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/features.pxi":20
+/* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":20
  *             yield (FD.word(self.names[i]), self.values[i])
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -1100,7 +1119,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_28___str__ {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":72
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":72
  *             self.read_text_data(fp)
  * 
  *     def read_bitext(self, char* filename, int side):             # <<<<<<<<<<<<<<
@@ -1114,7 +1133,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_1_read_bitext {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":124
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":124
  *     return tuple(sym_fromstring(word, True) for word in words)
  * 
  * def decode_words(syms):             # <<<<<<<<<<<<<<
@@ -1140,7 +1159,7 @@ struct __pyx_obj_3_sa_FeatureVector {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":114
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":114
  *     return tuple(((word, None, 1), ) for word in word_ids)
  * 
  * def decode_lattice(lattice):             # <<<<<<<<<<<<<<
@@ -1153,7 +1172,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_7_decode_lattice {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":972
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":973
  *         return sorted(result);
  * 
  *     def input(self, fwords, meta):             # <<<<<<<<<<<<<<
@@ -1189,6 +1208,8 @@ struct __pyx_obj_3_sa___pyx_scope_struct_19_input {
   long __pyx_v_hit;
   int __pyx_v_i;
   PyObject *__pyx_v_input_match;
+  PyObject *__pyx_v_intersect_start_time;
+  PyObject *__pyx_v_intersect_stop_time;
   PyObject *__pyx_v_is_shadow_path;
   int __pyx_v_j;
   int __pyx_v_k;
@@ -1232,21 +1253,17 @@ struct __pyx_obj_3_sa___pyx_scope_struct_19_input {
   PyObject *__pyx_v_xnode;
   PyObject *__pyx_v_xroot;
   Py_ssize_t __pyx_t_0;
-  PyObject *__pyx_t_1;
-  Py_ssize_t __pyx_t_2;
-  int __pyx_t_3;
+  Py_ssize_t __pyx_t_1;
+  PyObject *__pyx_t_2;
+  PyObject *__pyx_t_3;
   PyObject *__pyx_t_4;
-  PyObject *__pyx_t_5;
-  int __pyx_t_6;
-  Py_ssize_t __pyx_t_7;
-  Py_ssize_t __pyx_t_8;
-  Py_ssize_t __pyx_t_9;
-  PyObject *(*__pyx_t_10)(PyObject *);
-  PyObject *(*__pyx_t_11)(PyObject *);
+  PyObject *(*__pyx_t_5)(PyObject *);
+  Py_ssize_t __pyx_t_6;
+  PyObject *(*__pyx_t_7)(PyObject *);
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/features.pxi":23
+/* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":23
  *         return ' '.join('%s=%s' % feat for feat in self)
  * 
  * cdef class Scorer:             # <<<<<<<<<<<<<<
@@ -1260,7 +1277,7 @@ struct __pyx_obj_3_sa_Scorer {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":8
+/* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":8
  * # May need to revisit if things get really tight, though.
  * 
  * cdef class Alignment:             # <<<<<<<<<<<<<<
@@ -1275,7 +1292,7 @@ struct __pyx_obj_3_sa_Alignment {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":118
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":118
  * # (entirely C-implemented) _BitSet struct.
  * # Very slow; use only for debugging
  * cdef class BitSet:             # <<<<<<<<<<<<<<
@@ -1288,7 +1305,7 @@ struct __pyx_obj_3_sa_BitSet {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":106
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":106
  * 
  * 
  * cdef class Sampler:             # <<<<<<<<<<<<<<
@@ -1302,7 +1319,7 @@ struct __pyx_obj_3_sa_Sampler {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":8
+/* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":8
  *     char* stringmap_word(StrMap *vocab, int i)
  * 
  * cdef class StringMap:             # <<<<<<<<<<<<<<
@@ -1316,7 +1333,7 @@ struct __pyx_obj_3_sa_StringMap {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2161
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2166
  *     # (Used for EGivenFCoherent)
  *     # Return set of (fphrase, lex_i, lex_j)
  *     def get_f_phrases(self, f_words):             # <<<<<<<<<<<<<<
@@ -1333,7 +1350,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_26_get_f_phrases {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":46
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":46
  * cdef int EPSILON = sym_fromstring('*EPS*', True)
  * 
  * cdef class TrieNode:             # <<<<<<<<<<<<<<
@@ -1346,7 +1363,7 @@ struct __pyx_obj_3_sa_TrieNode {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":52
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":52
  *         self.children = {}
  * 
  * cdef class ExtendedTrieNode(TrieNode):             # <<<<<<<<<<<<<<
@@ -1361,7 +1378,7 @@ struct __pyx_obj_3_sa_ExtendedTrieNode {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":109
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":109
  *         trie_node_to_map(edge.node, result, prefix, include_zeros)
  * 
  * cdef class TrieMap:             # <<<<<<<<<<<<<<
@@ -1376,7 +1393,7 @@ struct __pyx_obj_3_sa_TrieMap {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":115
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":115
  * 
  * def decode_lattice(lattice):
  *     return tuple((sym_tostring(sym), weight, dist) for (sym, weight, dist) in arc             # <<<<<<<<<<<<<<
@@ -1403,7 +1420,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_8_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":110
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":110
  *     return sym_isvar(sym)
  * 
  * def make_lattice(words):             # <<<<<<<<<<<<<<
@@ -1434,7 +1451,7 @@ struct __pyx_obj_3_sa_Phrase {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/features.pxi":15
+/* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":15
  *         self.values.append(value)
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -1450,7 +1467,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_27___iter__ {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":81
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":81
  *         free(self.arr)
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -1466,7 +1483,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct____iter__ {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":63
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":63
  * 
  * 
  * cdef class TrieTable:             # <<<<<<<<<<<<<<
@@ -1481,7 +1498,7 @@ struct __pyx_obj_3_sa_TrieTable {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":111
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":111
  * 
  * def make_lattice(words):
  *     word_ids = (sym_fromstring(word, True) for word in words)             # <<<<<<<<<<<<<<
@@ -1498,7 +1515,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct_5_genexpr {
 };
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":119
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":119
  * 
  * def decode_sentence(lattice):
  *     return tuple(sym_tostring(sym) for ((sym, _, _),) in lattice)             # <<<<<<<<<<<<<<
@@ -1534,7 +1551,7 @@ struct __pyx_obj_3_sa_FloatList {
 
 
 
-/* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":8
+/* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":8
  *     char* stringmap_word(StrMap *vocab, int i)
  * 
  * cdef class StringMap:             # <<<<<<<<<<<<<<
@@ -1549,7 +1566,7 @@ struct __pyx_vtabstruct_3_sa_StringMap {
 static struct __pyx_vtabstruct_3_sa_StringMap *__pyx_vtabptr_3_sa_StringMap;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":9
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":9
  * from libc.string cimport memset, strcpy
  * 
  * cdef class DataArray:             # <<<<<<<<<<<<<<
@@ -1564,7 +1581,7 @@ struct __pyx_vtabstruct_3_sa_DataArray {
 static struct __pyx_vtabstruct_3_sa_DataArray *__pyx_vtabptr_3_sa_DataArray;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":109
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":109
  *         trie_node_to_map(edge.node, result, prefix, include_zeros)
  * 
  * cdef class TrieMap:             # <<<<<<<<<<<<<<
@@ -1579,7 +1596,7 @@ struct __pyx_vtabstruct_3_sa_TrieMap {
 static struct __pyx_vtabstruct_3_sa_TrieMap *__pyx_vtabptr_3_sa_TrieMap;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":8
+/* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":8
  * # May need to revisit if things get really tight, though.
  * 
  * cdef class Alignment:             # <<<<<<<<<<<<<<
@@ -1595,7 +1612,7 @@ struct __pyx_vtabstruct_3_sa_Alignment {
 static struct __pyx_vtabstruct_3_sa_Alignment *__pyx_vtabptr_3_sa_Alignment;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":47
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":47
  * 
  * 
  * cdef class BiLex:             # <<<<<<<<<<<<<<
@@ -1614,7 +1631,7 @@ struct __pyx_vtabstruct_3_sa_BiLex {
 static struct __pyx_vtabstruct_3_sa_BiLex *__pyx_vtabptr_3_sa_BiLex;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":9
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":9
  * from libc.string cimport memset, memcpy
  * 
  * cdef class IntList:             # <<<<<<<<<<<<<<
@@ -1634,7 +1651,7 @@ struct __pyx_vtabstruct_3_sa_IntList {
 static struct __pyx_vtabstruct_3_sa_IntList *__pyx_vtabptr_3_sa_IntList;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":4
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":4
  * from libc.string cimport strsep, strcpy, strlen
  * 
  * cdef class Phrase:             # <<<<<<<<<<<<<<
@@ -1649,7 +1666,7 @@ struct __pyx_vtabstruct_3_sa_Phrase {
 static struct __pyx_vtabstruct_3_sa_Phrase *__pyx_vtabptr_3_sa_Phrase;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":84
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":84
  * # in the suffix array; if discontiguous, it is the set of
  * # actual locations (packed into an array)
  * cdef class PhraseLocation:             # <<<<<<<<<<<<<<
@@ -1663,7 +1680,7 @@ struct __pyx_vtabstruct_3_sa_PhraseLocation {
 static struct __pyx_vtabstruct_3_sa_PhraseLocation *__pyx_vtabptr_3_sa_PhraseLocation;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":188
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":188
  * 
  * 
  * cdef class Precomputation:             # <<<<<<<<<<<<<<
@@ -1678,7 +1695,7 @@ struct __pyx_vtabstruct_3_sa_Precomputation {
 static struct __pyx_vtabstruct_3_sa_Precomputation *__pyx_vtabptr_3_sa_Precomputation;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/features.pxi":23
+/* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":23
  *         return ' '.join('%s=%s' % feat for feat in self)
  * 
  * cdef class Scorer:             # <<<<<<<<<<<<<<
@@ -1692,7 +1709,7 @@ struct __pyx_vtabstruct_3_sa_Scorer {
 static struct __pyx_vtabstruct_3_sa_Scorer *__pyx_vtabptr_3_sa_Scorer;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":9
+/* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":9
  * from libc.string cimport memset, strcpy, strlen
  * 
  * cdef class FloatList:             # <<<<<<<<<<<<<<
@@ -1708,7 +1725,7 @@ struct __pyx_vtabstruct_3_sa_FloatList {
 static struct __pyx_vtabstruct_3_sa_FloatList *__pyx_vtabptr_3_sa_FloatList;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":354
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":354
  * 
  * 
  * cdef class VEB:             # <<<<<<<<<<<<<<
@@ -1724,7 +1741,7 @@ struct __pyx_vtabstruct_3_sa_VEB {
 static struct __pyx_vtabstruct_3_sa_VEB *__pyx_vtabptr_3_sa_VEB;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":7
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":7
  * cdef int INDEX_MASK = (1<<INDEX_SHIFT)-1
  * 
  * cdef class Alphabet:             # <<<<<<<<<<<<<<
@@ -1747,7 +1764,7 @@ struct __pyx_vtabstruct_3_sa_Alphabet {
 static struct __pyx_vtabstruct_3_sa_Alphabet *__pyx_vtabptr_3_sa_Alphabet;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":228
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":228
  * 
  * 
  * cdef class HieroCachingRuleFactory:             # <<<<<<<<<<<<<<
@@ -1775,7 +1792,7 @@ struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory {
 static struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *__pyx_vtabptr_3_sa_HieroCachingRuleFactory;
 
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":6
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":6
  * from libc.stdio cimport FILE, fclose, fopen
  * 
  * cdef class SuffixArray:             # <<<<<<<<<<<<<<
@@ -1906,18 +1923,11 @@ static int __Pyx_PyBytes_Tailmatch(PyObject* self, PyObject* substr, Py_ssize_t
                                    Py_ssize_t end, int direction)
 {
     if (unlikely(PyTuple_Check(substr))) {
-        Py_ssize_t i, count = PyTuple_GET_SIZE(substr);
-        for (i = 0; i < count; i++) {
-            int result;
-#if CYTHON_COMPILING_IN_CPYTHON
+        int result;
+        Py_ssize_t i;
+        for (i = 0; i < PyTuple_GET_SIZE(substr); i++) {
             result = __Pyx_PyBytes_SingleTailmatch(self, PyTuple_GET_ITEM(substr, i),
                                                    start, end, direction);
-#else
-            PyObject* sub = PySequence_GetItem(substr, i);
-            if (unlikely(!sub)) return -1;
-            result = __Pyx_PyBytes_SingleTailmatch(self, sub, start, end, direction);
-            Py_DECREF(sub);
-#endif
             if (result) {
                 return result;
             }
@@ -1956,47 +1966,42 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j
                                                     __Pyx_GetItemInt_List_Fast(o, i) : \
                                                     __Pyx_GetItemInt_Generic(o, to_py_func(i)))
 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) {
-#if CYTHON_COMPILING_IN_CPYTHON
-    if (likely((0 <= i) & (i < PyList_GET_SIZE(o)))) {
-        PyObject *r = PyList_GET_ITEM(o, i);
-        Py_INCREF(r);
-        return r;
-    }
-    else if ((-PyList_GET_SIZE(o) <= i) & (i < 0)) {
-        PyObject *r = PyList_GET_ITEM(o, PyList_GET_SIZE(o) + i);
-        Py_INCREF(r);
-        return r;
+    if (likely(o != Py_None)) {
+        if (likely((0 <= i) & (i < PyList_GET_SIZE(o)))) {
+            PyObject *r = PyList_GET_ITEM(o, i);
+            Py_INCREF(r);
+            return r;
+        }
+        else if ((-PyList_GET_SIZE(o) <= i) & (i < 0)) {
+            PyObject *r = PyList_GET_ITEM(o, PyList_GET_SIZE(o) + i);
+            Py_INCREF(r);
+            return r;
+        }
     }
     return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
-#else
-    return PySequence_GetItem(o, i);
-#endif
 }
 #define __Pyx_GetItemInt_Tuple(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \
                                                     __Pyx_GetItemInt_Tuple_Fast(o, i) : \
                                                     __Pyx_GetItemInt_Generic(o, to_py_func(i)))
 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) {
-#if CYTHON_COMPILING_IN_CPYTHON
-    if (likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) {
-        PyObject *r = PyTuple_GET_ITEM(o, i);
-        Py_INCREF(r);
-        return r;
-    }
-    else if ((-PyTuple_GET_SIZE(o) <= i) & (i < 0)) {
-        PyObject *r = PyTuple_GET_ITEM(o, PyTuple_GET_SIZE(o) + i);
-        Py_INCREF(r);
-        return r;
+    if (likely(o != Py_None)) {
+        if (likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) {
+            PyObject *r = PyTuple_GET_ITEM(o, i);
+            Py_INCREF(r);
+            return r;
+        }
+        else if ((-PyTuple_GET_SIZE(o) <= i) & (i < 0)) {
+            PyObject *r = PyTuple_GET_ITEM(o, PyTuple_GET_SIZE(o) + i);
+            Py_INCREF(r);
+            return r;
+        }
     }
     return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
-#else
-    return PySequence_GetItem(o, i);
-#endif
 }
 #define __Pyx_GetItemInt(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \
                                                     __Pyx_GetItemInt_Fast(o, i) : \
                                                     __Pyx_GetItemInt_Generic(o, to_py_func(i)))
 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i) {
-#if CYTHON_COMPILING_IN_CPYTHON
     if (PyList_CheckExact(o)) {
         Py_ssize_t n = (likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
         if (likely((n >= 0) & (n < PyList_GET_SIZE(o)))) {
@@ -2012,36 +2017,30 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i)
             Py_INCREF(r);
             return r;
         }
-    } else {  /* inlined PySequence_GetItem() */
+    }
+    else if (likely(i >= 0)) {
         PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
         if (likely(m && m->sq_item)) {
-            if (unlikely(i < 0) && likely(m->sq_length)) {
-                Py_ssize_t l = m->sq_length(o);
-                if (unlikely(l < 0)) return NULL;
-                i += l;
-            }
             return m->sq_item(o, i);
         }
     }
-#else
-    if (PySequence_Check(o)) {
-        return PySequence_GetItem(o, i);
-    }
-#endif
     return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
 }
 
-static CYTHON_INLINE int __Pyx_PySequence_Contains(PyObject* item, PyObject* seq, int eq) {
-    int result = PySequence_Contains(seq, item);
-    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
+static CYTHON_INLINE int __Pyx_NegateNonNeg(int b) {
+    return unlikely(b < 0) ? b : !b;
+}
+static CYTHON_INLINE PyObject* __Pyx_PyBoolOrNull_FromLong(long b) {
+    return unlikely(b < 0) ? NULL : __Pyx_PyBool_FromLong(b);
 }
 
 static CYTHON_INLINE PyObject* __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
     if (likely(PyList_CheckExact(L))) {
-        if (unlikely(PyList_Append(L, x) < 0)) return NULL;
+        if (PyList_Append(L, x) < 0) return NULL;
         Py_INCREF(Py_None);
         return Py_None; /* this is just to have an accurate signature */
-    } else {
+    }
+    else {
         PyObject *r, *m;
         m = __Pyx_GetAttrString(L, "append");
         if (!m) return NULL;
@@ -2059,11 +2058,9 @@ static CYTHON_INLINE long __Pyx_div_long(long, long); /* proto */
 
 static CYTHON_INLINE long __Pyx_mod_long(long, long); /* proto */
 
-static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
-
 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
 
-static CYTHON_INLINE int __Pyx_IterFinish(void); /*proto*/
+static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
 
 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); /*proto*/
 
@@ -2078,7 +2075,6 @@ static CYTHON_INLINE int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyOb
     return r;
 }
 static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v) {
-#if CYTHON_COMPILING_IN_CPYTHON
     if (PyList_CheckExact(o)) {
         Py_ssize_t n = (likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
         if (likely((n >= 0) & (n < PyList_GET_SIZE(o)))) {
@@ -2088,79 +2084,26 @@ static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObje
             Py_DECREF(old);
             return 1;
         }
-    } else {  /* inlined PySequence_SetItem() */
+    }
+    else if (likely(i >= 0)) {
         PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
         if (likely(m && m->sq_ass_item)) {
-            if (unlikely(i < 0) && likely(m->sq_length)) {
-                Py_ssize_t l = m->sq_length(o);
-                if (unlikely(l < 0)) return -1;
-                i += l;
-            }
             return m->sq_ass_item(o, i, v);
         }
     }
-#else
-#if CYTHON_COMPILING_IN_PYPY
-    if (PySequence_Check(o) && !PyDict_Check(o)) {
-#else
-    if (PySequence_Check(o)) {
-#endif
-        return PySequence_SetItem(o, i, v);
-    }
-#endif
     return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v);
 }
 
 static double __Pyx__PyObject_AsDouble(PyObject* obj); /* proto */
-#if CYTHON_COMPILING_IN_PYPY
-#define __Pyx_PyObject_AsDouble(obj) \
-(likely(PyFloat_CheckExact(obj)) ? PyFloat_AS_DOUBLE(obj) : \
- likely(PyInt_CheckExact(obj)) ? \
- PyFloat_AsDouble(obj) : __Pyx__PyObject_AsDouble(obj))
-#else
 #define __Pyx_PyObject_AsDouble(obj) \
 ((likely(PyFloat_CheckExact(obj))) ? \
  PyFloat_AS_DOUBLE(obj) : __Pyx__PyObject_AsDouble(obj))
-#endif
 
 static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);
 
 static int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
     const char *name, int exact); /*proto*/
 
-#if CYTHON_COMPILING_IN_CPYTHON
-static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
-    PyListObject* L = (PyListObject*) list;
-    Py_ssize_t len = Py_SIZE(list);
-    if (likely(L->allocated > len)) {
-        Py_INCREF(x);
-        PyList_SET_ITEM(list, len, x);
-        Py_SIZE(list) = len+1;
-        return 0;
-    }
-    return PyList_Append(list, x);
-}
-#else
-#define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
-#endif
-
-static CYTHON_INLINE int __Pyx_PyDict_Contains(PyObject* item, PyObject* dict, int eq) {
-    int result = PyDict_Contains(dict, item);
-    return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
-}
-
-static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);
-
-static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index); /*proto*/
-
-static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** value1, PyObject** value2,
-                                             int is_tuple, int has_known_size, int decref_tuple);
-
-static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name,
-                                                   Py_ssize_t* p_orig_length, int* p_is_dict);
-static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos,
-                                              PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict);
-
 #if PY_VERSION_HEX < 0x02050000
 #ifndef PyAnySet_CheckExact
 #define PyAnySet_CheckExact(ob) \
@@ -2194,9 +2137,15 @@ static CYTHON_INLINE int PySet_Add(PyObject *set, PyObject *key) {
 #endif /* PyAnySet_CheckExact (<= Py2.4) */
 #endif /* < Py2.5  */
 
+static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void);
+
 #if PY_MAJOR_VERSION >= 3
 static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
     PyObject *value;
+    if (unlikely(d == Py_None)) {
+        __Pyx_RaiseNoneIndexingError();
+        return NULL;
+    }
     value = PyDict_GetItemWithError(d, key);
     if (unlikely(!value)) {
         if (!PyErr_Occurred())
@@ -2237,6 +2186,18 @@ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level);
 
 static CYTHON_INLINE void __Pyx_RaiseImportError(PyObject *name);
 
+#include <string.h>
+
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+#if PY_MAJOR_VERSION >= 3
+#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
+#else
+#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
+#endif
+
 #define __Pyx_CyFunction_USED 1
 #include <structmember.h>
 #define __Pyx_CYFUNCTION_STATICMETHOD  0x01
@@ -2318,30 +2279,22 @@ static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value,
 
 #define __Pyx_Generator_USED
 #include <structmember.h>
-#include <frameobject.h>
 typedef PyObject *(*__pyx_generator_body_t)(PyObject *, PyObject *);
 typedef struct {
     PyObject_HEAD
     __pyx_generator_body_t body;
     PyObject *closure;
+    int is_running;
+    int resume_label;
     PyObject *exc_type;
     PyObject *exc_value;
     PyObject *exc_traceback;
     PyObject *gi_weakreflist;
     PyObject *classobj;
-    PyObject *yieldfrom;
-    int resume_label;
-    char is_running;  // using T_BOOL for property below requires char value
 } __pyx_GeneratorObject;
 static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
                                                   PyObject *closure);
 static int __pyx_Generator_init(void);
-static int __Pyx_Generator_clear(PyObject* self);
-#if 1 || PY_VERSION_HEX < 0x030300B0
-static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue);
-#else
-#define __Pyx_PyGen_FetchStopIterationValue(pvalue) PyGen_FetchStopIterationValue(pvalue)
-#endif
 
 static int __Pyx_check_binary_version(void);
 
@@ -2447,7 +2400,6 @@ static struct __pyx_obj_3_sa_StringMap *__pyx_v_3_sa_FD = 0;
 static char *__pyx_f_3_sa_sym_tostring(int); /*proto*/
 static int __pyx_f_3_sa_sym_isvar(int); /*proto*/
 static int __pyx_f_3_sa_sym_getindex(int); /*proto*/
-static float __pyx_f_3_sa_monitor_cpu(void); /*proto*/
 static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int); /*proto*/
 static PyObject *__pyx_f_3_sa_del_node(struct __pyx_t_3_sa__node *); /*proto*/
 static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *, int); /*proto*/
@@ -2494,7 +2446,8 @@ static PyObject *__pyx_builtin_StopIteration;
 static PyObject *__pyx_builtin_cmp;
 static PyObject *__pyx_builtin_sorted;
 static PyObject *__pyx_builtin_max;
-static PyObject *__pyx_pf_3_sa_gzip_or_text(CYTHON_UNUSED PyObject *__pyx_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_monitor_cpu(CYTHON_UNUSED PyObject *__pyx_self); /* proto */
+static PyObject *__pyx_pf_3_sa_2gzip_or_text(CYTHON_UNUSED PyObject *__pyx_self, char *__pyx_v_filename); /* proto */
 static int __pyx_pf_3_sa_9FloatList___cinit__(struct __pyx_obj_3_sa_FloatList *__pyx_v_self, int __pyx_v_size, int __pyx_v_increment, int __pyx_v_initial_len); /* proto */
 static void __pyx_pf_3_sa_9FloatList_2__dealloc__(struct __pyx_obj_3_sa_FloatList *__pyx_v_self); /* proto */
 static PyObject *__pyx_pf_3_sa_9FloatList_4__getitem__(struct __pyx_obj_3_sa_FloatList *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
@@ -2596,18 +2549,18 @@ static int __pyx_pf_3_sa_8Alphabet___cinit__(struct __pyx_obj_3_sa_Alphabet *__p
 static void __pyx_pf_3_sa_8Alphabet_2__dealloc__(CYTHON_UNUSED struct __pyx_obj_3_sa_Alphabet *__pyx_v_self); /* proto */
 static PyObject *__pyx_pf_3_sa_8Alphabet_9terminals___get__(struct __pyx_obj_3_sa_Alphabet *__pyx_v_self); /* proto */
 static PyObject *__pyx_pf_3_sa_8Alphabet_12nonterminals___get__(struct __pyx_obj_3_sa_Alphabet *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_3_sa_2isvar(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_sym); /* proto */
+static PyObject *__pyx_pf_3_sa_4isvar(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_sym); /* proto */
 static PyObject *__pyx_pf_3_sa_12make_lattice_genexpr(PyObject *__pyx_self); /* proto */
 static PyObject *__pyx_pf_3_sa_12make_lattice_3genexpr(PyObject *__pyx_self); /* proto */
-static PyObject *__pyx_pf_3_sa_4make_lattice(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_words); /* proto */
+static PyObject *__pyx_pf_3_sa_6make_lattice(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_words); /* proto */
 static PyObject *__pyx_pf_3_sa_14decode_lattice_genexpr(PyObject *__pyx_self); /* proto */
-static PyObject *__pyx_pf_3_sa_6decode_lattice(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_lattice); /* proto */
+static PyObject *__pyx_pf_3_sa_8decode_lattice(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_lattice); /* proto */
 static PyObject *__pyx_pf_3_sa_15decode_sentence_genexpr(PyObject *__pyx_self); /* proto */
-static PyObject *__pyx_pf_3_sa_8decode_sentence(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_lattice); /* proto */
+static PyObject *__pyx_pf_3_sa_10decode_sentence(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_lattice); /* proto */
 static PyObject *__pyx_pf_3_sa_12encode_words_genexpr(PyObject *__pyx_self); /* proto */
-static PyObject *__pyx_pf_3_sa_10encode_words(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_words); /* proto */
+static PyObject *__pyx_pf_3_sa_12encode_words(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_words); /* proto */
 static PyObject *__pyx_pf_3_sa_12decode_words_genexpr(PyObject *__pyx_self); /* proto */
-static PyObject *__pyx_pf_3_sa_12decode_words(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_syms); /* proto */
+static PyObject *__pyx_pf_3_sa_14decode_words(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_syms); /* proto */
 static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, PyObject *__pyx_v_words); /* proto */
 static void __pyx_pf_3_sa_6Phrase_2__dealloc__(struct __pyx_obj_3_sa_Phrase *__pyx_v_self); /* proto */
 static PyObject *__pyx_pf_3_sa_6Phrase_4__str__(struct __pyx_obj_3_sa_Phrase *__pyx_v_self); /* proto */
@@ -2714,9 +2667,9 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_33dump_online_rules(str
 static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_35online_ctx_lookup(struct __pyx_obj_3_sa_HieroCachingRuleFactory *__pyx_v_self, PyObject *__pyx_v_f, PyObject *__pyx_v_e); /* proto */
 static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_13get_f_phrases_extract(PyObject *__pyx_self, PyObject *__pyx_v_f_i, PyObject *__pyx_v_f_j, PyObject *__pyx_v_lex_i, PyObject *__pyx_v_lex_j, PyObject *__pyx_v_wc, PyObject *__pyx_v_ntc, PyObject *__pyx_v_syms); /* proto */
 static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_37get_f_phrases(struct __pyx_obj_3_sa_HieroCachingRuleFactory *__pyx_v_self, PyObject *__pyx_v_f_words); /* proto */
-static PyObject *__pyx_pf_3_sa_14span_check(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_vec, PyObject *__pyx_v_i, PyObject *__pyx_v_j); /* proto */
-static PyObject *__pyx_pf_3_sa_16span_inc(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_vec, PyObject *__pyx_v_i, PyObject *__pyx_v_j); /* proto */
-static PyObject *__pyx_pf_3_sa_18span_dec(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_vec, PyObject *__pyx_v_i, PyObject *__pyx_v_j); /* proto */
+static PyObject *__pyx_pf_3_sa_16span_check(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_vec, PyObject *__pyx_v_i, PyObject *__pyx_v_j); /* proto */
+static PyObject *__pyx_pf_3_sa_18span_inc(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_vec, PyObject *__pyx_v_i, PyObject *__pyx_v_j); /* proto */
+static PyObject *__pyx_pf_3_sa_20span_dec(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_vec, PyObject *__pyx_v_i, PyObject *__pyx_v_j); /* proto */
 static int __pyx_pf_3_sa_13FeatureVector___cinit__(struct __pyx_obj_3_sa_FeatureVector *__pyx_v_self); /* proto */
 static PyObject *__pyx_pf_3_sa_13FeatureVector_2set(struct __pyx_obj_3_sa_FeatureVector *__pyx_v_self, unsigned int __pyx_v_name, float __pyx_v_value); /* proto */
 static PyObject *__pyx_pf_3_sa_13FeatureVector_4__iter__(struct __pyx_obj_3_sa_FeatureVector *__pyx_v_self); /* proto */
@@ -2813,26 +2766,27 @@ static char __pyx_k_121[] = "Keyword trie error";
 static char __pyx_k_123[] = "get_all_nodes_isteps_away";
 static char __pyx_k_124[] = "Total time for rule lookup, extraction, and scoring = %f seconds";
 static char __pyx_k_125[] = "    Extract time = %f seconds";
-static char __pyx_k_126[] = "No aligned terminals";
-static char __pyx_k_127[] = "Unaligned chunk";
-static char __pyx_k_128[] = "Gaps are not tight phrases";
-static char __pyx_k_129[] = "Inside edges of preceding subphrase are not tight";
-static char __pyx_k_130[] = "Inside edges of following subphrase are not tight";
-static char __pyx_k_131[] = "Subphrase [%d, %d] failed integrity check";
-static char __pyx_k_132[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
-static char __pyx_k_133[] = "Unable to extract basic phrase";
-static char __pyx_k_136[] = "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi";
-static char __pyx_k_137[] = "{0}-{1}";
-static char __pyx_k_138[] = "[X] ||| {0} ||| {1} ||| {2}";
-static char __pyx_k_139[] = "------------------------------";
-static char __pyx_k_141[] = "         Online Stats         ";
-static char __pyx_k_145[] = " : ";
-static char __pyx_k_151[] = "OnlineFeatureContext";
-static char __pyx_k_154[] = "%s=%s";
-static char __pyx_k_157[] = "/home/m/workspace/cdec/python/src/sa/_sa.pyx";
-static char __pyx_k_158[] = "cdec.sa";
-static char __pyx_k_162[] = "/home/m/workspace/cdec/python/src/sa/sym.pxi";
-static char __pyx_k_173[] = "*EPS*";
+static char __pyx_k_126[] = "    Intersect time = %f seconds";
+static char __pyx_k_127[] = "No aligned terminals";
+static char __pyx_k_128[] = "Unaligned chunk";
+static char __pyx_k_129[] = "Gaps are not tight phrases";
+static char __pyx_k_130[] = "Inside edges of preceding subphrase are not tight";
+static char __pyx_k_131[] = "Inside edges of following subphrase are not tight";
+static char __pyx_k_132[] = "Subphrase [%d, %d] failed integrity check";
+static char __pyx_k_133[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
+static char __pyx_k_134[] = "Unable to extract basic phrase";
+static char __pyx_k_137[] = "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi";
+static char __pyx_k_138[] = "{0}-{1}";
+static char __pyx_k_139[] = "[X] ||| {0} ||| {1} ||| {2}";
+static char __pyx_k_140[] = "------------------------------";
+static char __pyx_k_142[] = "         Online Stats         ";
+static char __pyx_k_146[] = " : ";
+static char __pyx_k_152[] = "OnlineFeatureContext";
+static char __pyx_k_155[] = "%s=%s";
+static char __pyx_k_157[] = "/home/paulb/workspace/cdec/python/src/sa/_sa.pyx";
+static char __pyx_k_160[] = "cdec.sa";
+static char __pyx_k_164[] = "/home/paulb/workspace/cdec/python/src/sa/sym.pxi";
+static char __pyx_k_175[] = "*EPS*";
 static char __pyx_k__FE[] = "FE";
 static char __pyx_k__al[] = "al";
 static char __pyx_k__fe[] = "fe";
@@ -3026,6 +2980,7 @@ static char __pyx_k__defaultdict[] = "defaultdict";
 static char __pyx_k__from_binary[] = "from_binary";
 static char __pyx_k__initial_len[] = "initial_len";
 static char __pyx_k__input_match[] = "input_match";
+static char __pyx_k__monitor_cpu[] = "monitor_cpu";
 static char __pyx_k__next_states[] = "next_states";
 static char __pyx_k__old_last_nt[] = "old_last_nt";
 static char __pyx_k__precomputed[] = "precomputed";
@@ -3105,18 +3060,19 @@ static PyObject *__pyx_kp_s_130;
 static PyObject *__pyx_kp_s_131;
 static PyObject *__pyx_kp_s_132;
 static PyObject *__pyx_kp_s_133;
-static PyObject *__pyx_kp_s_136;
+static PyObject *__pyx_kp_s_134;
 static PyObject *__pyx_kp_s_137;
 static PyObject *__pyx_kp_s_138;
 static PyObject *__pyx_kp_s_139;
 static PyObject *__pyx_kp_s_14;
-static PyObject *__pyx_kp_s_141;
-static PyObject *__pyx_kp_s_145;
-static PyObject *__pyx_n_s_151;
-static PyObject *__pyx_kp_s_154;
+static PyObject *__pyx_kp_s_140;
+static PyObject *__pyx_kp_s_142;
+static PyObject *__pyx_kp_s_146;
+static PyObject *__pyx_n_s_152;
+static PyObject *__pyx_kp_s_155;
 static PyObject *__pyx_kp_s_157;
-static PyObject *__pyx_kp_s_158;
-static PyObject *__pyx_kp_s_162;
+static PyObject *__pyx_kp_s_160;
+static PyObject *__pyx_kp_s_164;
 static PyObject *__pyx_kp_s_18;
 static PyObject *__pyx_kp_s_2;
 static PyObject *__pyx_kp_s_21;
@@ -3323,6 +3279,7 @@ static PyObject *__pyx_n_s__meta;
 static PyObject *__pyx_n_s__min_bound;
 static PyObject *__pyx_n_s__min_dist;
 static PyObject *__pyx_n_s__min_gap_size;
+static PyObject *__pyx_n_s__monitor_cpu;
 static PyObject *__pyx_n_s__name;
 static PyObject *__pyx_n_s__namedtuple;
 static PyObject *__pyx_n_s__new_e_i;
@@ -3479,57 +3436,70 @@ static PyObject *__pyx_k_tuple_98;
 static PyObject *__pyx_k_tuple_102;
 static PyObject *__pyx_k_tuple_107;
 static PyObject *__pyx_k_tuple_122;
-static PyObject *__pyx_k_tuple_134;
-static PyObject *__pyx_k_tuple_140;
-static PyObject *__pyx_k_tuple_142;
+static PyObject *__pyx_k_tuple_135;
+static PyObject *__pyx_k_tuple_141;
 static PyObject *__pyx_k_tuple_143;
 static PyObject *__pyx_k_tuple_144;
-static PyObject *__pyx_k_tuple_146;
+static PyObject *__pyx_k_tuple_145;
 static PyObject *__pyx_k_tuple_147;
 static PyObject *__pyx_k_tuple_148;
 static PyObject *__pyx_k_tuple_149;
 static PyObject *__pyx_k_tuple_150;
-static PyObject *__pyx_k_tuple_152;
-static PyObject *__pyx_k_tuple_155;
-static PyObject *__pyx_k_tuple_159;
-static PyObject *__pyx_k_tuple_160;
-static PyObject *__pyx_k_tuple_163;
+static PyObject *__pyx_k_tuple_151;
+static PyObject *__pyx_k_tuple_153;
+static PyObject *__pyx_k_tuple_158;
+static PyObject *__pyx_k_tuple_161;
+static PyObject *__pyx_k_tuple_162;
 static PyObject *__pyx_k_tuple_165;
 static PyObject *__pyx_k_tuple_167;
 static PyObject *__pyx_k_tuple_169;
 static PyObject *__pyx_k_tuple_171;
-static PyObject *__pyx_k_tuple_174;
+static PyObject *__pyx_k_tuple_173;
 static PyObject *__pyx_k_tuple_176;
 static PyObject *__pyx_k_tuple_178;
-static PyObject *__pyx_k_codeobj_135;
-static PyObject *__pyx_k_codeobj_153;
+static PyObject *__pyx_k_tuple_180;
+static PyObject *__pyx_k_codeobj_136;
+static PyObject *__pyx_k_codeobj_154;
 static PyObject *__pyx_k_codeobj_156;
-static PyObject *__pyx_k_codeobj_161;
-static PyObject *__pyx_k_codeobj_164;
+static PyObject *__pyx_k_codeobj_159;
+static PyObject *__pyx_k_codeobj_163;
 static PyObject *__pyx_k_codeobj_166;
 static PyObject *__pyx_k_codeobj_168;
 static PyObject *__pyx_k_codeobj_170;
 static PyObject *__pyx_k_codeobj_172;
-static PyObject *__pyx_k_codeobj_175;
+static PyObject *__pyx_k_codeobj_174;
 static PyObject *__pyx_k_codeobj_177;
 static PyObject *__pyx_k_codeobj_179;
+static PyObject *__pyx_k_codeobj_181;
+
+/* Python wrapper */
+static PyObject *__pyx_pw_3_sa_1monitor_cpu(PyObject *__pyx_self, CYTHON_UNUSED PyObject *unused); /*proto*/
+static PyMethodDef __pyx_mdef_3_sa_1monitor_cpu = {__Pyx_NAMESTR("monitor_cpu"), (PyCFunction)__pyx_pw_3_sa_1monitor_cpu, METH_NOARGS, __Pyx_DOCSTR(0)};
+static PyObject *__pyx_pw_3_sa_1monitor_cpu(PyObject *__pyx_self, CYTHON_UNUSED PyObject *unused) {
+  PyObject *__pyx_r = 0;
+  __Pyx_RefNannyDeclarations
+  __Pyx_RefNannySetupContext("monitor_cpu (wrapper)", 0);
+  __pyx_self = __pyx_self;
+  __pyx_r = __pyx_pf_3_sa_monitor_cpu(__pyx_self);
+  __Pyx_RefNannyFinishContext();
+  return __pyx_r;
+}
 
 /* "_sa.pyx":5
  * import gzip
  * 
- * cdef float monitor_cpu():             # <<<<<<<<<<<<<<
+ * def monitor_cpu():             # <<<<<<<<<<<<<<
  *     return (resource.getrusage(resource.RUSAGE_SELF).ru_utime+
  *             resource.getrusage(resource.RUSAGE_SELF).ru_stime)
  */
 
-static float __pyx_f_3_sa_monitor_cpu(void) {
-  float __pyx_r;
+static PyObject *__pyx_pf_3_sa_monitor_cpu(CYTHON_UNUSED PyObject *__pyx_self) {
+  PyObject *__pyx_r = NULL;
   __Pyx_RefNannyDeclarations
   PyObject *__pyx_t_1 = NULL;
   PyObject *__pyx_t_2 = NULL;
   PyObject *__pyx_t_3 = NULL;
   PyObject *__pyx_t_4 = NULL;
-  float __pyx_t_5;
   int __pyx_lineno = 0;
   const char *__pyx_filename = NULL;
   int __pyx_clineno = 0;
@@ -3537,11 +3507,12 @@ static float __pyx_f_3_sa_monitor_cpu(void) {
 
   /* "_sa.pyx":6
  * 
- * cdef float monitor_cpu():
+ * def monitor_cpu():
  *     return (resource.getrusage(resource.RUSAGE_SELF).ru_utime+             # <<<<<<<<<<<<<<
  *             resource.getrusage(resource.RUSAGE_SELF).ru_stime)
  * 
  */
+  __Pyx_XDECREF(__pyx_r);
   __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__resource); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __pyx_t_2 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__getrusage); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -3566,7 +3537,7 @@ static float __pyx_f_3_sa_monitor_cpu(void) {
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
   /* "_sa.pyx":7
- * cdef float monitor_cpu():
+ * def monitor_cpu():
  *     return (resource.getrusage(resource.RUSAGE_SELF).ru_utime+
  *             resource.getrusage(resource.RUSAGE_SELF).ru_stime)             # <<<<<<<<<<<<<<
  * 
@@ -3598,33 +3569,34 @@ static float __pyx_f_3_sa_monitor_cpu(void) {
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-/* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":42
+/* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":42
  *         self.set(i, val)
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -4302,7 +4289,7 @@ static Py_ssize_t __pyx_pf_3_sa_9FloatList_8__len__(struct __pyx_obj_3_sa_FloatL
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":43
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":43
  * 
  *     def __len__(self):
  *         return self.len             # <<<<<<<<<<<<<<
@@ -4339,7 +4326,7 @@ static PyObject *__pyx_pw_3_sa_9FloatList_11append(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":45
+/* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":45
  *         return self.len
  * 
  *     def append(self, float val):             # <<<<<<<<<<<<<<
@@ -4353,7 +4340,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_10append(struct __pyx_obj_3_sa_FloatLi
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("append", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":46
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":46
  * 
  *     def append(self, float val):
  *         if self.len == self.size:             # <<<<<<<<<<<<<<
@@ -4363,7 +4350,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_10append(struct __pyx_obj_3_sa_FloatLi
   __pyx_t_1 = (__pyx_v_self->len == __pyx_v_self->size);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":47
+    /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":47
  *     def append(self, float val):
  *         if self.len == self.size:
  *             self.size = self.size + self.increment             # <<<<<<<<<<<<<<
@@ -4372,7 +4359,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_10append(struct __pyx_obj_3_sa_FloatLi
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     __pyx_v_self->size = (__pyx_v_self->size + __pyx_v_self->increment);
 
-    /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":48
+    /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":48
  *         if self.len == self.size:
  *             self.size = self.size + self.increment
  *             self.arr = <float*> realloc(self.arr, self.size*sizeof(float))             # <<<<<<<<<<<<<<
@@ -4384,7 +4371,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_10append(struct __pyx_obj_3_sa_FloatLi
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":49
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":49
  *             self.size = self.size + self.increment
  *             self.arr = <float*> realloc(self.arr, self.size*sizeof(float))
  *         self.arr[self.len] = val             # <<<<<<<<<<<<<<
@@ -4393,7 +4380,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_10append(struct __pyx_obj_3_sa_FloatLi
  */
   (__pyx_v_self->arr[__pyx_v_self->len]) = __pyx_v_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":50
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":50
  *             self.arr = <float*> realloc(self.arr, self.size*sizeof(float))
  *         self.arr[self.len] = val
  *         self.len = self.len + 1             # <<<<<<<<<<<<<<
@@ -4408,7 +4395,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_10append(struct __pyx_obj_3_sa_FloatLi
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":52
+/* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":52
  *         self.len = self.len + 1
  * 
  *     cdef void write_handle(self, FILE* f):             # <<<<<<<<<<<<<<
@@ -4420,7 +4407,7 @@ static void __pyx_f_3_sa_9FloatList_write_handle(struct __pyx_obj_3_sa_FloatList
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("write_handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":53
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":53
  * 
  *     cdef void write_handle(self, FILE* f):
  *         fwrite(&(self.len), sizeof(float), 1, f)             # <<<<<<<<<<<<<<
@@ -4429,7 +4416,7 @@ static void __pyx_f_3_sa_9FloatList_write_handle(struct __pyx_obj_3_sa_FloatList
  */
   fwrite((&__pyx_v_self->len), (sizeof(float)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":54
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":54
  *     cdef void write_handle(self, FILE* f):
  *         fwrite(&(self.len), sizeof(float), 1, f)
  *         fwrite(self.arr, sizeof(float), self.len, f)             # <<<<<<<<<<<<<<
@@ -4462,7 +4449,7 @@ static PyObject *__pyx_pw_3_sa_9FloatList_13write(PyObject *__pyx_v_self, PyObje
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":56
+/* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":56
  *         fwrite(self.arr, sizeof(float), self.len, f)
  * 
  *     def write(self, char* filename):             # <<<<<<<<<<<<<<
@@ -4476,7 +4463,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_12write(struct __pyx_obj_3_sa_FloatLis
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("write", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":58
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":58
  *     def write(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "w")             # <<<<<<<<<<<<<<
@@ -4485,7 +4472,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_12write(struct __pyx_obj_3_sa_FloatLis
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__w);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":59
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":59
  *         cdef FILE* f
  *         f = fopen(filename, "w")
  *         self.write_handle(f)             # <<<<<<<<<<<<<<
@@ -4494,7 +4481,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_12write(struct __pyx_obj_3_sa_FloatLis
  */
   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->__pyx_vtab)->write_handle(__pyx_v_self, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":60
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":60
  *         f = fopen(filename, "w")
  *         self.write_handle(f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -4509,7 +4496,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_12write(struct __pyx_obj_3_sa_FloatLis
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":62
+/* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":62
  *         fclose(f)
  * 
  *     cdef void read_handle(self, FILE* f):             # <<<<<<<<<<<<<<
@@ -4521,7 +4508,7 @@ static void __pyx_f_3_sa_9FloatList_read_handle(struct __pyx_obj_3_sa_FloatList
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("read_handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":63
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":63
  * 
  *     cdef void read_handle(self, FILE* f):
  *         free(self.arr)             # <<<<<<<<<<<<<<
@@ -4530,7 +4517,7 @@ static void __pyx_f_3_sa_9FloatList_read_handle(struct __pyx_obj_3_sa_FloatList
  */
   free(__pyx_v_self->arr);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":64
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":64
  *     cdef void read_handle(self, FILE* f):
  *         free(self.arr)
  *         fread(&(self.len), sizeof(float), 1, f)             # <<<<<<<<<<<<<<
@@ -4539,7 +4526,7 @@ static void __pyx_f_3_sa_9FloatList_read_handle(struct __pyx_obj_3_sa_FloatList
  */
   fread((&__pyx_v_self->len), (sizeof(float)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":65
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":65
  *         free(self.arr)
  *         fread(&(self.len), sizeof(float), 1, f)
  *         self.arr = <float*> malloc(self.len * sizeof(float))             # <<<<<<<<<<<<<<
@@ -4548,7 +4535,7 @@ static void __pyx_f_3_sa_9FloatList_read_handle(struct __pyx_obj_3_sa_FloatList
  */
   __pyx_v_self->arr = ((float *)malloc((__pyx_v_self->len * (sizeof(float)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":66
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":66
  *         fread(&(self.len), sizeof(float), 1, f)
  *         self.arr = <float*> malloc(self.len * sizeof(float))
  *         self.size = self.len             # <<<<<<<<<<<<<<
@@ -4557,7 +4544,7 @@ static void __pyx_f_3_sa_9FloatList_read_handle(struct __pyx_obj_3_sa_FloatList
  */
   __pyx_v_self->size = __pyx_v_self->len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":67
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":67
  *         self.arr = <float*> malloc(self.len * sizeof(float))
  *         self.size = self.len
  *         fread(self.arr, sizeof(float), self.len, f)             # <<<<<<<<<<<<<<
@@ -4590,7 +4577,7 @@ static PyObject *__pyx_pw_3_sa_9FloatList_15read(PyObject *__pyx_v_self, PyObjec
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":69
+/* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":69
  *         fread(self.arr, sizeof(float), self.len, f)
  * 
  *     def read(self, char* filename):             # <<<<<<<<<<<<<<
@@ -4604,7 +4591,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_14read(struct __pyx_obj_3_sa_FloatList
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("read", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":71
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":71
  *     def read(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "r")             # <<<<<<<<<<<<<<
@@ -4613,7 +4600,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_14read(struct __pyx_obj_3_sa_FloatList
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__r);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":72
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":72
  *         cdef FILE* f
  *         f = fopen(filename, "r")
  *         self.read_handle(f)             # <<<<<<<<<<<<<<
@@ -4621,7 +4608,7 @@ static PyObject *__pyx_pf_3_sa_9FloatList_14read(struct __pyx_obj_3_sa_FloatList
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   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->__pyx_vtab)->read_handle(__pyx_v_self, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/float_list.pxi":73
+  /* "/home/paulb/workspace/cdec/python/src/sa/float_list.pxi":73
  *         f = fopen(filename, "r")
  *         self.read_handle(f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -4640,11 +4627,11 @@ static int __pyx_pw_3_sa_7IntList_1__cinit__(PyObject *__pyx_v_self, PyObject *_
   int __pyx_v_size;
   int __pyx_v_increment;
   int __pyx_v_initial_len;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__size,&__pyx_n_s__increment,&__pyx_n_s__initial_len,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__size,&__pyx_n_s__increment,&__pyx_n_s__initial_len,0};
     PyObject* values[3] = {0,0,0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -4677,6 +4664,18 @@ static int __pyx_pw_3_sa_7IntList_1__cinit__(PyObject *__pyx_v_self, PyObject *_
       if (unlikely(kw_args > 0)) {
         if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 11; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
       }
+      if (values[0]) {
+      } else {
+        __pyx_v_size = ((int)0);
+      }
+      if (values[1]) {
+      } else {
+        __pyx_v_increment = ((int)1);
+      }
+      if (values[2]) {
+      } else {
+        __pyx_v_initial_len = ((int)0);
+      }
     } else {
       switch (PyTuple_GET_SIZE(__pyx_args)) {
         case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
@@ -4715,7 +4714,7 @@ static int __pyx_pw_3_sa_7IntList_1__cinit__(PyObject *__pyx_v_self, PyObject *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":11
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":11
  * cdef class IntList:
  * 
  *     def __cinit__(self, int size=0, int increment=1, int initial_len=0):             # <<<<<<<<<<<<<<
@@ -4729,7 +4728,7 @@ static int __pyx_pf_3_sa_7IntList___cinit__(struct __pyx_obj_3_sa_IntList *__pyx
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":12
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":12
  * 
  *     def __cinit__(self, int size=0, int increment=1, int initial_len=0):
  *         if initial_len > size:             # <<<<<<<<<<<<<<
@@ -4739,7 +4738,7 @@ static int __pyx_pf_3_sa_7IntList___cinit__(struct __pyx_obj_3_sa_IntList *__pyx
   __pyx_t_1 = (__pyx_v_initial_len > __pyx_v_size);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":13
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":13
  *     def __cinit__(self, int size=0, int increment=1, int initial_len=0):
  *         if initial_len > size:
  *             size = initial_len             # <<<<<<<<<<<<<<
@@ -4751,7 +4750,7 @@ static int __pyx_pf_3_sa_7IntList___cinit__(struct __pyx_obj_3_sa_IntList *__pyx
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":14
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":14
  *         if initial_len > size:
  *             size = initial_len
  *         self.size = size             # <<<<<<<<<<<<<<
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  */
   __pyx_v_self->size = __pyx_v_size;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":15
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":15
  *             size = initial_len
  *         self.size = size
  *         self.increment = increment             # <<<<<<<<<<<<<<
@@ -4769,7 +4768,7 @@ static int __pyx_pf_3_sa_7IntList___cinit__(struct __pyx_obj_3_sa_IntList *__pyx
  */
   __pyx_v_self->increment = __pyx_v_increment;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":16
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":16
  *         self.size = size
  *         self.increment = increment
  *         self.len = initial_len             # <<<<<<<<<<<<<<
@@ -4778,7 +4777,7 @@ static int __pyx_pf_3_sa_7IntList___cinit__(struct __pyx_obj_3_sa_IntList *__pyx
  */
   __pyx_v_self->len = __pyx_v_initial_len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":17
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":17
  *         self.increment = increment
  *         self.len = initial_len
  *         self.arr = <int*> malloc(size*sizeof(int))             # <<<<<<<<<<<<<<
@@ -4787,7 +4786,7 @@ static int __pyx_pf_3_sa_7IntList___cinit__(struct __pyx_obj_3_sa_IntList *__pyx
  */
   __pyx_v_self->arr = ((int *)malloc((__pyx_v_size * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":18
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":18
  *         self.len = initial_len
  *         self.arr = <int*> malloc(size*sizeof(int))
  *         memset(self.arr, 0, initial_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -4812,7 +4811,7 @@ static PyObject *__pyx_pw_3_sa_7IntList_3__str__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":20
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":20
  *         memset(self.arr, 0, initial_len*sizeof(int))
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -4835,7 +4834,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_2__str__(struct __pyx_obj_3_sa_IntList *
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__str__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":22
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":22
  *     def __str__(self):
  *         cdef unsigned i
  *         ret = "IntList["             # <<<<<<<<<<<<<<
@@ -4845,7 +4844,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_2__str__(struct __pyx_obj_3_sa_IntList *
   __Pyx_INCREF(((PyObject *)__pyx_kp_s_3));
   __pyx_v_ret = ((PyObject *)__pyx_kp_s_3);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":23
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":23
  *         cdef unsigned i
  *         ret = "IntList["
  *         for idx in range(self.size):             # <<<<<<<<<<<<<<
@@ -4856,7 +4855,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_2__str__(struct __pyx_obj_3_sa_IntList *
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_v_idx = __pyx_t_2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":24
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":24
  *         ret = "IntList["
  *         for idx in range(self.size):
  *             if idx>0:             # <<<<<<<<<<<<<<
@@ -4866,7 +4865,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_2__str__(struct __pyx_obj_3_sa_IntList *
     __pyx_t_3 = (__pyx_v_idx > 0);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":25
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":25
  *         for idx in range(self.size):
  *             if idx>0:
  *                 ret += ","             # <<<<<<<<<<<<<<
@@ -4882,7 +4881,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_2__str__(struct __pyx_obj_3_sa_IntList *
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":26
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":26
  *             if idx>0:
  *                 ret += ","
  *             ret += str(self.arr[idx])             # <<<<<<<<<<<<<<
@@ -4907,7 +4906,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_2__str__(struct __pyx_obj_3_sa_IntList *
     __pyx_t_5 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":27
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":27
  *                 ret += ","
  *             ret += str(self.arr[idx])
  *         ret += "]"             # <<<<<<<<<<<<<<
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   __pyx_v_ret = __pyx_t_5;
   __pyx_t_5 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":28
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":28
  *             ret += str(self.arr[idx])
  *         ret += "]"
  *         ret += "len="             # <<<<<<<<<<<<<<
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   __pyx_v_ret = __pyx_t_5;
   __pyx_t_5 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":29
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":29
  *         ret += "]"
  *         ret += "len="
  *         ret += str(self.len)             # <<<<<<<<<<<<<<
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   __pyx_v_ret = __pyx_t_4;
   __pyx_t_4 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":30
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":30
  *         ret += "len="
  *         ret += str(self.len)
  *         return ret             # <<<<<<<<<<<<<<
@@ -4994,7 +4993,7 @@ static PyObject *__pyx_pw_3_sa_7IntList_5index(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":32
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":32
  *         return ret
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@@ -5016,7 +5015,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_4index(struct __pyx_obj_3_sa_IntList *__
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":34
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":34
  *     def index(self, val):
  *         cdef unsigned i
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@@ -5027,7 +5026,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_4index(struct __pyx_obj_3_sa_IntList *__
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     __pyx_v_i = __pyx_t_2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":35
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":35
  *         cdef unsigned i
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@@ -5036,13 +5035,14 @@ static PyObject *__pyx_pf_3_sa_7IntList_4index(struct __pyx_obj_3_sa_IntList *__
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     __Pyx_GOTREF(__pyx_t_3);
-    __pyx_t_4 = PyObject_RichCompare(__pyx_t_3, __pyx_v_val, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = PyObject_RichCompare(__pyx_t_3, __pyx_v_val, Py_EQ); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_4);
     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
     __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_5 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 35; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":36
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":36
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@@ -5060,7 +5060,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_4index(struct __pyx_obj_3_sa_IntList *__
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":37
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":37
  *             if self.arr[i] == val:
  *                 return i
  *         return IndexError             # <<<<<<<<<<<<<<
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 static PyObject *__pyx_pw_3_sa_7IntList_7partition(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   PyObject *__pyx_v_start = 0;
   PyObject *__pyx_v_end = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__start,&__pyx_n_s__end,0};
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@@ -5108,10 +5108,12 @@ static PyObject *__pyx_pw_3_sa_7IntList_7partition(PyObject *__pyx_v_self, PyObj
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       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__start)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__start);
+        if (likely(values[0])) kw_args--;
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-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__end)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__end);
+        if (likely(values[1])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("partition", 1, 2, 2, 1); {__pyx_filename = __pyx_f[2]; __pyx_lineno = 39; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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@@ -5141,7 +5143,7 @@ static PyObject *__pyx_pw_3_sa_7IntList_7partition(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":39
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":39
  *         return IndexError
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  *     def partition(self,start,end):             # <<<<<<<<<<<<<<
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":40
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":40
  * 
  *     def partition(self,start,end):
  *         pivot = self.arr[end]             # <<<<<<<<<<<<<<
@@ -5180,7 +5182,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
   __pyx_v_pivot = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":41
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":41
  *     def partition(self,start,end):
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@@ -5192,7 +5194,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
   __pyx_v_bottom = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":42
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":42
  *         pivot = self.arr[end]
  *         bottom = start-1
  *         top = end             # <<<<<<<<<<<<<<
@@ -5202,7 +5204,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
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   __pyx_v_top = __pyx_v_end;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":43
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":43
  *         bottom = start-1
  *         top = end
  *         done = 0             # <<<<<<<<<<<<<<
@@ -5211,7 +5213,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
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   __pyx_v_done = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":44
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":44
  *         top = end
  *         done = 0
  *         while not done:             # <<<<<<<<<<<<<<
@@ -5222,7 +5224,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
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     if (!__pyx_t_3) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":45
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":45
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@@ -5233,7 +5235,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
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       if (!__pyx_t_3) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":46
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":46
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  *                 bottom += 1             # <<<<<<<<<<<<<<
@@ -5246,19 +5248,20 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
       __pyx_v_bottom = __pyx_t_2;
       __pyx_t_2 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":47
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":47
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-      __pyx_t_2 = PyObject_RichCompare(__pyx_v_bottom, __pyx_v_top, Py_EQ); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = PyObject_RichCompare(__pyx_v_bottom, __pyx_v_top, Py_EQ); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_2);
       __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":48
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":48
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  *                 if bottom == top:
  *                     done = 1             # <<<<<<<<<<<<<<
@@ -5267,7 +5270,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
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         __pyx_v_done = 1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":49
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":49
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  *                     done = 1
  *                     break             # <<<<<<<<<<<<<<
@@ -5279,7 +5282,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
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-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":50
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":50
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  *                     break
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       __pyx_t_2 = PyInt_FromLong((__pyx_v_self->arr[__pyx_t_1])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      __pyx_t_4 = PyObject_RichCompare(__pyx_t_2, __pyx_v_pivot, Py_GT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = PyObject_RichCompare(__pyx_t_2, __pyx_v_pivot, Py_GT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_4);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
       __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 50; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":51
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":51
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@@ -5306,7 +5310,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
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         (__pyx_v_self->arr[__pyx_t_5]) = (__pyx_v_self->arr[__pyx_t_1]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":52
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":52
  *                 if self.arr[bottom] > pivot:
  *                     self.arr[top] = self.arr[bottom]
  *                     break             # <<<<<<<<<<<<<<
@@ -5320,7 +5324,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_6partition(struct __pyx_obj_3_sa_IntList
     }
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":53
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":53
  *                     self.arr[top] = self.arr[bottom]
  *                     break
  *             while not done:             # <<<<<<<<<<<<<<
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       if (!__pyx_t_3) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":54
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":54
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       __pyx_v_top = __pyx_t_4;
       __pyx_t_4 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":55
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":55
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-      __pyx_t_4 = PyObject_RichCompare(__pyx_v_top, __pyx_v_bottom, Py_EQ); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = PyObject_RichCompare(__pyx_v_top, __pyx_v_bottom, Py_EQ); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_4);
       __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":56
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":56
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  *                     done = 1             # <<<<<<<<<<<<<<
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         __pyx_v_done = 1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":57
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":57
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-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":58
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":58
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+      __pyx_t_2 = PyObject_RichCompare(__pyx_t_4, __pyx_v_pivot, Py_LT); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
       __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":59
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":59
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-        /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":60
+        /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":60
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  *                     break             # <<<<<<<<<<<<<<
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     __pyx_L10_break:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":61
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":61
  *                     self.arr[bottom] = self.arr[top]
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":62
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":62
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       switch (pos_args) {
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-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__start)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__start);
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-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__end)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__end);
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":64
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":64
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":65
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":65
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-  __pyx_t_1 = PyObject_RichCompare(__pyx_v_start, __pyx_v_end, Py_LT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 65; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_RichCompare(__pyx_v_start, __pyx_v_end, Py_LT); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 65; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":66
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":66
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     __pyx_t_4 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":67
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":67
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  *             self._doquicksort(start,split-1)             # <<<<<<<<<<<<<<
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":68
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":68
  *             split = self.partition(start,end)
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  *             self._doquicksort(split+1,end)             # <<<<<<<<<<<<<<
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   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":70
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":70
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":72
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":72
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@@ -5682,7 +5691,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_10sort(struct __pyx_obj_3_sa_IntList *__
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":73
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":73
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  *     def sort(self):
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":75
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":75
  *         self._doquicksort(0,self.len-1)
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":76
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-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":78
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":79
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":79
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":81
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":81
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":83
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":83
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":84
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":84
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":86
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-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":88
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":88
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":89
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":89
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@@ -5979,7 +5987,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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     __pyx_v_j = __pyx_t_3;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":90
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":90
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@@ -5989,7 +5997,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":91
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":91
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@@ -6001,7 +6009,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":92
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":92
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@@ -6017,7 +6025,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":93
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":93
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@@ -6052,7 +6060,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":94
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":94
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@@ -6068,7 +6076,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":95
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":95
  *                 raise IndexError("Requested index %d of %d-length IntList" % (index, self.len))
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":96
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":96
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@@ -6094,7 +6102,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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     __pyx_v_i = __pyx_t_3;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":97
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":97
  *         elif isinstance(index, slice):
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@@ -6107,7 +6115,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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     __pyx_v_j = __pyx_t_3;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":98
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":98
  *             i = index.start
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@@ -6117,7 +6125,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":99
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":99
  *             j = index.stop
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@@ -6129,7 +6137,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":100
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":100
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@@ -6139,7 +6147,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":101
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":101
  *                 i = self.len + i
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@@ -6151,7 +6159,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":102
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":102
  *             if j < 0:
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@@ -6179,7 +6187,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
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-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":103
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":103
  *                 j = self.len + j
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@@ -6221,7 +6229,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
     }
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-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":104
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":104
  *             if i < 0 or i >= self.len or j < 0 or j > self.len:
  *                 raise IndexError("Requested index %d:%d of %d-length IntList" % (index.start, index.stop, self.len))
  *             result = ()             # <<<<<<<<<<<<<<
@@ -6231,7 +6239,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
     __Pyx_INCREF(((PyObject *)__pyx_empty_tuple));
     __pyx_v_result = __pyx_empty_tuple;
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":105
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":105
  *                 raise IndexError("Requested index %d:%d of %d-length IntList" % (index.start, index.stop, self.len))
  *             result = ()
  *             for k from i <= k < j:             # <<<<<<<<<<<<<<
@@ -6241,7 +6249,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
     __pyx_t_3 = __pyx_v_j;
     for (__pyx_v_k = __pyx_v_i; __pyx_v_k < __pyx_t_3; __pyx_v_k++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":106
+      /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":106
  *             result = ()
  *             for k from i <= k < j:
  *                 result = result + (self.arr[k],)             # <<<<<<<<<<<<<<
@@ -6263,7 +6271,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
       __pyx_t_9 = 0;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":107
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":107
  *             for k from i <= k < j:
  *                 result = result + (self.arr[k],)
  *             return result             # <<<<<<<<<<<<<<
@@ -6278,7 +6286,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":109
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":109
  *             return result
  *         else:
  *             raise TypeError("Illegal key type %s for IntList" % type(index))             # <<<<<<<<<<<<<<
@@ -6317,7 +6325,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_19__getitem__(struct __pyx_obj_3_sa_IntL
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":111
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":111
  *             raise TypeError("Illegal key type %s for IntList" % type(index))
  * 
  *     cdef void set(self, int i, int val):             # <<<<<<<<<<<<<<
@@ -6339,7 +6347,7 @@ static void __pyx_f_3_sa_7IntList_set(struct __pyx_obj_3_sa_IntList *__pyx_v_sel
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("set", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":112
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":112
  * 
  *     cdef void set(self, int i, int val):
  *         j = i             # <<<<<<<<<<<<<<
@@ -6348,7 +6356,7 @@ static void __pyx_f_3_sa_7IntList_set(struct __pyx_obj_3_sa_IntList *__pyx_v_sel
  */
   __pyx_v_j = __pyx_v_i;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":113
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":113
  *     cdef void set(self, int i, int val):
  *         j = i
  *         if i<0:             # <<<<<<<<<<<<<<
@@ -6358,7 +6366,7 @@ static void __pyx_f_3_sa_7IntList_set(struct __pyx_obj_3_sa_IntList *__pyx_v_sel
   __pyx_t_1 = (__pyx_v_i < 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":114
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":114
  *         j = i
  *         if i<0:
  *             j = self.len + i             # <<<<<<<<<<<<<<
@@ -6370,7 +6378,7 @@ static void __pyx_f_3_sa_7IntList_set(struct __pyx_obj_3_sa_IntList *__pyx_v_sel
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":115
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":115
  *         if i<0:
  *             j = self.len + i
  *         if j<0 or j>=self.len:             # <<<<<<<<<<<<<<
@@ -6386,7 +6394,7 @@ static void __pyx_f_3_sa_7IntList_set(struct __pyx_obj_3_sa_IntList *__pyx_v_sel
   }
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":116
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":116
  *             j = self.len + i
  *         if j<0 or j>=self.len:
  *             raise IndexError("Requested index %d of %d-length IntList" % (i, self.len))             # <<<<<<<<<<<<<<
@@ -6423,7 +6431,7 @@ static void __pyx_f_3_sa_7IntList_set(struct __pyx_obj_3_sa_IntList *__pyx_v_sel
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":117
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":117
  *         if j<0 or j>=self.len:
  *             raise IndexError("Requested index %d of %d-length IntList" % (i, self.len))
  *         self.arr[j] = val             # <<<<<<<<<<<<<<
@@ -6453,7 +6461,7 @@ static int __pyx_pw_3_sa_7IntList_22__setitem__(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":119
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":119
  *         self.arr[j] = val
  * 
  *     def __setitem__(self, i, val):             # <<<<<<<<<<<<<<
@@ -6471,7 +6479,7 @@ static int __pyx_pf_3_sa_7IntList_21__setitem__(struct __pyx_obj_3_sa_IntList *_
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   __Pyx_RefNannySetupContext("__setitem__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":120
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":120
  * 
  *     def __setitem__(self, i, val):
  *         self.set(i, val)             # <<<<<<<<<<<<<<
@@ -6503,7 +6511,7 @@ static Py_ssize_t __pyx_pw_3_sa_7IntList_24__len__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":122
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":122
  *         self.set(i, val)
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -6516,7 +6524,7 @@ static Py_ssize_t __pyx_pf_3_sa_7IntList_23__len__(struct __pyx_obj_3_sa_IntList
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   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":123
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":123
  * 
  *     def __len__(self):
  *         return self.len             # <<<<<<<<<<<<<<
@@ -6543,7 +6551,7 @@ static PyObject *__pyx_pw_3_sa_7IntList_26get_size(PyObject *__pyx_v_self, CYTHO
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":125
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":125
  *         return self.len
  * 
  *     def get_size(self):             # <<<<<<<<<<<<<<
@@ -6560,7 +6568,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_25get_size(struct __pyx_obj_3_sa_IntList
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   __Pyx_RefNannySetupContext("get_size", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":126
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":126
  * 
  *     def get_size(self):
  *         return self.size             # <<<<<<<<<<<<<<
@@ -6607,7 +6615,7 @@ static PyObject *__pyx_pw_3_sa_7IntList_28append(PyObject *__pyx_v_self, PyObjec
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":128
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":128
  *         return self.size
  * 
  *     def append(self, int val):             # <<<<<<<<<<<<<<
@@ -6620,7 +6628,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_27append(struct __pyx_obj_3_sa_IntList *
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("append", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":129
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":129
  * 
  *     def append(self, int val):
  *         self._append(val)             # <<<<<<<<<<<<<<
@@ -6635,7 +6643,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_27append(struct __pyx_obj_3_sa_IntList *
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":131
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":131
  *         self._append(val)
  * 
  *     cdef void _append(self, int val):             # <<<<<<<<<<<<<<
@@ -6648,7 +6656,7 @@ static void __pyx_f_3_sa_7IntList__append(struct __pyx_obj_3_sa_IntList *__pyx_v
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("_append", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":132
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":132
  * 
  *     cdef void _append(self, int val):
  *         if self.len == self.size:             # <<<<<<<<<<<<<<
@@ -6658,7 +6666,7 @@ static void __pyx_f_3_sa_7IntList__append(struct __pyx_obj_3_sa_IntList *__pyx_v
   __pyx_t_1 = (__pyx_v_self->len == __pyx_v_self->size);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":133
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":133
  *     cdef void _append(self, int val):
  *         if self.len == self.size:
  *             self.size = self.size + self.increment             # <<<<<<<<<<<<<<
@@ -6667,7 +6675,7 @@ static void __pyx_f_3_sa_7IntList__append(struct __pyx_obj_3_sa_IntList *__pyx_v
  */
     __pyx_v_self->size = (__pyx_v_self->size + __pyx_v_self->increment);
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":134
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":134
  *         if self.len == self.size:
  *             self.size = self.size + self.increment
  *             self.arr = <int*> realloc(self.arr, self.size*sizeof(int))             # <<<<<<<<<<<<<<
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   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":135
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":135
  *             self.size = self.size + self.increment
  *             self.arr = <int*> realloc(self.arr, self.size*sizeof(int))
  *         self.arr[self.len] = val             # <<<<<<<<<<<<<<
@@ -6688,7 +6696,7 @@ static void __pyx_f_3_sa_7IntList__append(struct __pyx_obj_3_sa_IntList *__pyx_v
  */
   (__pyx_v_self->arr[__pyx_v_self->len]) = __pyx_v_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":136
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":136
  *             self.arr = <int*> realloc(self.arr, self.size*sizeof(int))
  *         self.arr[self.len] = val
  *         self.len = self.len + 1             # <<<<<<<<<<<<<<
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   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":138
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":138
  *         self.len = self.len + 1
  * 
  *     def extend(self, other):             # <<<<<<<<<<<<<<
@@ -6728,7 +6736,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_29extend(struct __pyx_obj_3_sa_IntList *
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   __Pyx_RefNannySetupContext("extend", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":139
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":139
  * 
  *     def extend(self, other):
  *         self._extend(other)             # <<<<<<<<<<<<<<
@@ -6753,7 +6761,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_29extend(struct __pyx_obj_3_sa_IntList *
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":141
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":141
  *         self._extend(other)
  * 
  *     cdef void _extend(self, IntList other):             # <<<<<<<<<<<<<<
@@ -6765,7 +6773,7 @@ static void __pyx_f_3_sa_7IntList__extend(struct __pyx_obj_3_sa_IntList *__pyx_v
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("_extend", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":142
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":142
  * 
  *     cdef void _extend(self, IntList other):
  *         self._extend_arr(other.arr, other.len)             # <<<<<<<<<<<<<<
@@ -6777,7 +6785,7 @@ static void __pyx_f_3_sa_7IntList__extend(struct __pyx_obj_3_sa_IntList *__pyx_v
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":144
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":144
  *         self._extend_arr(other.arr, other.len)
  * 
  *     cdef void _extend_arr(self, int* other, int other_len):             # <<<<<<<<<<<<<<
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   int __pyx_t_1;
   __Pyx_RefNannySetupContext("_extend_arr", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":145
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":145
  * 
  *     cdef void _extend_arr(self, int* other, int other_len):
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@@ -6800,7 +6808,7 @@ static void __pyx_f_3_sa_7IntList__extend_arr(struct __pyx_obj_3_sa_IntList *__p
   __pyx_t_1 = (__pyx_v_self->size < (__pyx_v_self->len + __pyx_v_other_len));
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":146
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":146
  *     cdef void _extend_arr(self, int* other, int other_len):
  *         if self.size < self.len + other_len:
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@@ -6809,7 +6817,7 @@ static void __pyx_f_3_sa_7IntList__extend_arr(struct __pyx_obj_3_sa_IntList *__p
  */
     __pyx_v_self->size = (__pyx_v_self->len + __pyx_v_other_len);
 
-    /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":147
+    /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":147
  *         if self.size < self.len + other_len:
  *             self.size = self.len + other_len
  *             self.arr = <int*> realloc(self.arr, self.size*sizeof(int))             # <<<<<<<<<<<<<<
@@ -6821,7 +6829,7 @@ static void __pyx_f_3_sa_7IntList__extend_arr(struct __pyx_obj_3_sa_IntList *__p
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":148
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":148
  *             self.size = self.len + other_len
  *             self.arr = <int*> realloc(self.arr, self.size*sizeof(int))
  *         memcpy(self.arr+self.len, other, other_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -6830,7 +6838,7 @@ static void __pyx_f_3_sa_7IntList__extend_arr(struct __pyx_obj_3_sa_IntList *__p
  */
   memcpy((__pyx_v_self->arr + __pyx_v_self->len), __pyx_v_other, (__pyx_v_other_len * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":149
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":149
  *             self.arr = <int*> realloc(self.arr, self.size*sizeof(int))
  *         memcpy(self.arr+self.len, other, other_len*sizeof(int))
  *         self.len = self.len + other_len             # <<<<<<<<<<<<<<
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":151
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":151
  *         self.len = self.len + other_len
  * 
  *     cdef void _clear(self):             # <<<<<<<<<<<<<<
@@ -6854,7 +6862,7 @@ static void __pyx_f_3_sa_7IntList__clear(struct __pyx_obj_3_sa_IntList *__pyx_v_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("_clear", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":152
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":152
  * 
  *     cdef void _clear(self):
  *         free(self.arr)             # <<<<<<<<<<<<<<
@@ -6863,7 +6871,7 @@ static void __pyx_f_3_sa_7IntList__clear(struct __pyx_obj_3_sa_IntList *__pyx_v_
  */
   free(__pyx_v_self->arr);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":153
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":153
  *     cdef void _clear(self):
  *         free(self.arr)
  *         self.len = 0             # <<<<<<<<<<<<<<
@@ -6872,7 +6880,7 @@ static void __pyx_f_3_sa_7IntList__clear(struct __pyx_obj_3_sa_IntList *__pyx_v_
  */
   __pyx_v_self->len = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":154
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":154
  *         free(self.arr)
  *         self.len = 0
  *         self.size = 0             # <<<<<<<<<<<<<<
@@ -6881,7 +6889,7 @@ static void __pyx_f_3_sa_7IntList__clear(struct __pyx_obj_3_sa_IntList *__pyx_v_
  */
   __pyx_v_self->size = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":155
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":155
  *         self.len = 0
  *         self.size = 0
  *         self.arr = <int*> malloc(0)             # <<<<<<<<<<<<<<
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":157
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":157
  *         self.arr = <int*> malloc(0)
  * 
  *     cdef void write_handle(self, FILE* f):             # <<<<<<<<<<<<<<
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   __Pyx_RefNannySetupContext("write_handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":158
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  * 
  *     cdef void write_handle(self, FILE* f):
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   fwrite((&__pyx_v_self->len), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":159
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":159
  *     cdef void write_handle(self, FILE* f):
  *         fwrite(&(self.len), sizeof(int), 1, f)
  *         fwrite(self.arr, sizeof(int), self.len, f)             # <<<<<<<<<<<<<<
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   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":161
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":161
  *         fwrite(self.arr, sizeof(int), self.len, f)
  * 
  *     def write(self, char* filename):             # <<<<<<<<<<<<<<
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   __Pyx_RefNannySetupContext("write", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":163
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":163
  *     def write(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "w")             # <<<<<<<<<<<<<<
@@ -6970,7 +6978,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_31write(struct __pyx_obj_3_sa_IntList *_
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__w);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":164
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":164
  *         cdef FILE* f
  *         f = fopen(filename, "w")
  *         self.write_handle(f)             # <<<<<<<<<<<<<<
@@ -6979,7 +6987,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_31write(struct __pyx_obj_3_sa_IntList *_
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   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->__pyx_vtab)->write_handle(__pyx_v_self, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":165
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":165
  *         f = fopen(filename, "w")
  *         self.write_handle(f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -6994,7 +7002,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_31write(struct __pyx_obj_3_sa_IntList *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":167
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":167
  *         fclose(f)
  * 
  *     cdef void read_handle(self, FILE* f):             # <<<<<<<<<<<<<<
@@ -7006,7 +7014,7 @@ static void __pyx_f_3_sa_7IntList_read_handle(struct __pyx_obj_3_sa_IntList *__p
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("read_handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":168
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":168
  * 
  *     cdef void read_handle(self, FILE* f):
  *         (self.arr)             # <<<<<<<<<<<<<<
@@ -7015,7 +7023,7 @@ static void __pyx_f_3_sa_7IntList_read_handle(struct __pyx_obj_3_sa_IntList *__p
  */
   __pyx_v_self->arr;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":169
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":169
  *     cdef void read_handle(self, FILE* f):
  *         (self.arr)
  *         fread(&(self.len), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -7024,7 +7032,7 @@ static void __pyx_f_3_sa_7IntList_read_handle(struct __pyx_obj_3_sa_IntList *__p
  */
   fread((&__pyx_v_self->len), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":170
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":170
  *         (self.arr)
  *         fread(&(self.len), sizeof(int), 1, f)
  *         self.arr = <int*> malloc(self.len * sizeof(int))             # <<<<<<<<<<<<<<
@@ -7033,7 +7041,7 @@ static void __pyx_f_3_sa_7IntList_read_handle(struct __pyx_obj_3_sa_IntList *__p
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   __pyx_v_self->arr = ((int *)malloc((__pyx_v_self->len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":171
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":171
  *         fread(&(self.len), sizeof(int), 1, f)
  *         self.arr = <int*> malloc(self.len * sizeof(int))
  *         self.size = self.len             # <<<<<<<<<<<<<<
@@ -7042,7 +7050,7 @@ static void __pyx_f_3_sa_7IntList_read_handle(struct __pyx_obj_3_sa_IntList *__p
  */
   __pyx_v_self->size = __pyx_v_self->len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":172
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":172
  *         self.arr = <int*> malloc(self.len * sizeof(int))
  *         self.size = self.len
  *         fread(self.arr, sizeof(int), self.len, f)             # <<<<<<<<<<<<<<
@@ -7075,7 +7083,7 @@ static PyObject *__pyx_pw_3_sa_7IntList_34read(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":174
+/* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":174
  *         fread(self.arr, sizeof(int), self.len, f)
  * 
  *     def read(self, char* filename):             # <<<<<<<<<<<<<<
@@ -7089,7 +7097,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_33read(struct __pyx_obj_3_sa_IntList *__
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("read", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":176
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":176
  *     def read(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "r")             # <<<<<<<<<<<<<<
@@ -7098,7 +7106,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_33read(struct __pyx_obj_3_sa_IntList *__
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   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__r);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":177
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":177
  *         cdef FILE* f
  *         f = fopen(filename, "r")
  *         self.read_handle(f)             # <<<<<<<<<<<<<<
@@ -7106,7 +7114,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_33read(struct __pyx_obj_3_sa_IntList *__
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   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->__pyx_vtab)->read_handle(__pyx_v_self, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/int_list.pxi":178
+  /* "/home/paulb/workspace/cdec/python/src/sa/int_list.pxi":178
  *         f = fopen(filename, "r")
  *         self.read_handle(f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -7133,7 +7141,7 @@ static int __pyx_pw_3_sa_9StringMap_1__cinit__(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":13
+/* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":13
  *     cdef int index(self, char *s)
  * 
  *     def __cinit__(self):             # <<<<<<<<<<<<<<
@@ -7146,7 +7154,7 @@ static int __pyx_pf_3_sa_9StringMap___cinit__(struct __pyx_obj_3_sa_StringMap *_
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   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":14
+  /* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":14
  * 
  *     def __cinit__(self):
  *         self.vocab = stringmap_new()             # <<<<<<<<<<<<<<
@@ -7169,7 +7177,7 @@ static void __pyx_pw_3_sa_9StringMap_3__dealloc__(PyObject *__pyx_v_self) {
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":16
+/* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":16
  *         self.vocab = stringmap_new()
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -7181,7 +7189,7 @@ static void __pyx_pf_3_sa_9StringMap_2__dealloc__(struct __pyx_obj_3_sa_StringMa
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":17
+  /* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":17
  * 
  *     def __dealloc__(self):
  *         stringmap_delete(self.vocab)             # <<<<<<<<<<<<<<
@@ -7193,7 +7201,7 @@ static void __pyx_pf_3_sa_9StringMap_2__dealloc__(struct __pyx_obj_3_sa_StringMa
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":19
+/* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":19
  *         stringmap_delete(self.vocab)
  * 
  *     cdef char *word(self, int i):             # <<<<<<<<<<<<<<
@@ -7206,7 +7214,7 @@ static char *__pyx_f_3_sa_9StringMap_word(struct __pyx_obj_3_sa_StringMap *__pyx
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   __Pyx_RefNannySetupContext("word", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":20
+  /* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":20
  * 
  *     cdef char *word(self, int i):
  *         return stringmap_word(self.vocab, i)             # <<<<<<<<<<<<<<
@@ -7222,7 +7230,7 @@ static char *__pyx_f_3_sa_9StringMap_word(struct __pyx_obj_3_sa_StringMap *__pyx
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":22
+/* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":22
  *         return stringmap_word(self.vocab, i)
  * 
  *     cdef int index(self, char *s):             # <<<<<<<<<<<<<<
@@ -7234,7 +7242,7 @@ static int __pyx_f_3_sa_9StringMap_index(struct __pyx_obj_3_sa_StringMap *__pyx_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("index", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/str_map.pxi":23
+  /* "/home/paulb/workspace/cdec/python/src/sa/str_map.pxi":23
  * 
  *     cdef int index(self, char *s):
  *         return stringmap_index(self.vocab, s)             # <<<<<<<<<<<<<<
@@ -7255,14 +7263,14 @@ static int __pyx_pw_3_sa_9DataArray_1__cinit__(PyObject *__pyx_v_self, PyObject
   PyObject *__pyx_v_from_text = 0;
   PyObject *__pyx_v_side = 0;
   int __pyx_v_use_sent_id;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_binary,&__pyx_n_s__from_text,&__pyx_n_s__side,&__pyx_n_s__use_sent_id,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_binary,&__pyx_n_s__from_text,&__pyx_n_s__side,&__pyx_n_s__use_sent_id,0};
     PyObject* values[4] = {0,0,0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":17
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":17
  *     cdef bint use_sent_id
  * 
  *     def __cinit__(self, from_binary=None, from_text=None, side=None, bint use_sent_id=False):             # <<<<<<<<<<<<<<
@@ -7309,6 +7317,10 @@ static int __pyx_pw_3_sa_9DataArray_1__cinit__(PyObject *__pyx_v_self, PyObject
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       }
+      if (values[3]) {
+      } else {
+        __pyx_v_use_sent_id = ((int)0);
+      }
     } else {
       switch (PyTuple_GET_SIZE(__pyx_args)) {
         case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
@@ -7354,7 +7366,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
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   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":18
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":18
  * 
  *     def __cinit__(self, from_binary=None, from_text=None, side=None, bint use_sent_id=False):
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@@ -7371,7 +7383,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
   __pyx_v_self->word2id = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":19
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":19
  *     def __cinit__(self, from_binary=None, from_text=None, side=None, bint use_sent_id=False):
  *         self.word2id = {"END_OF_FILE":0, "END_OF_LINE":1}
  *         self.id2word = ["END_OF_FILE", "END_OF_LINE"]             # <<<<<<<<<<<<<<
@@ -7392,7 +7404,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
   __pyx_v_self->id2word = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":20
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":20
  *         self.word2id = {"END_OF_FILE":0, "END_OF_LINE":1}
  *         self.id2word = ["END_OF_FILE", "END_OF_LINE"]
  *         self.data = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -7407,7 +7419,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
   __pyx_v_self->data = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":21
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":21
  *         self.id2word = ["END_OF_FILE", "END_OF_LINE"]
  *         self.data = IntList(1000,1000)
  *         self.sent_id = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -7422,7 +7434,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
   __pyx_v_self->sent_id = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":22
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":22
  *         self.data = IntList(1000,1000)
  *         self.sent_id = IntList(1000,1000)
  *         self.sent_index = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -7437,7 +7449,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
   __pyx_v_self->sent_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":23
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":23
  *         self.sent_id = IntList(1000,1000)
  *         self.sent_index = IntList(1000,1000)
  *         self.use_sent_id = use_sent_id             # <<<<<<<<<<<<<<
@@ -7446,7 +7458,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
  */
   __pyx_v_self->use_sent_id = __pyx_v_use_sent_id;
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":24
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":24
  *         self.sent_index = IntList(1000,1000)
  *         self.use_sent_id = use_sent_id
  *         if from_binary:             # <<<<<<<<<<<<<<
@@ -7456,7 +7468,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_from_binary); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 24; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":25
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":25
  *         self.use_sent_id = use_sent_id
  *         if from_binary:
  *             self.read_binary(from_binary)             # <<<<<<<<<<<<<<
@@ -7478,7 +7490,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":26
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":26
  *         if from_binary:
  *             self.read_binary(from_binary)
  *         elif from_text:             # <<<<<<<<<<<<<<
@@ -7488,7 +7500,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_from_text); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":27
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":27
  *             self.read_binary(from_binary)
  *         elif from_text:
  *             if side:             # <<<<<<<<<<<<<<
@@ -7498,7 +7510,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
     __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_side); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":28
+      /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":28
  *         elif from_text:
  *             if side:
  *                 self.read_bitext(from_text, (0 if side == 'source' else 1))             # <<<<<<<<<<<<<<
@@ -7507,9 +7519,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
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       __pyx_t_4 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__read_bitext); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_4);
-      __pyx_t_3 = PyObject_RichCompare(__pyx_v_side, ((PyObject *)__pyx_n_s__source), Py_EQ); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+      __pyx_t_2 = __Pyx_PyString_Equals(__pyx_v_side, ((PyObject *)__pyx_n_s__source), Py_EQ); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 28; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       if (__pyx_t_2) {
         __pyx_t_5 = 0;
       } else {
@@ -7534,7 +7544,7 @@ static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *_
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":30
+      /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":30
  *                 self.read_bitext(from_text, (0 if side == 'source' else 1))
  *             else:
  *                 self.read_text(from_text)             # <<<<<<<<<<<<<<
@@ -7583,7 +7593,7 @@ static Py_ssize_t __pyx_pw_3_sa_9DataArray_3__len__(PyObject *__pyx_v_self) {
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-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":32
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-          /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":75
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   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__r);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":97
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":97
  *         cdef FILE* f
  *         f = fopen(filename, "r")
  *         self.read_handle(f)             # <<<<<<<<<<<<<<
@@ -9387,7 +9368,7 @@ static PyObject *__pyx_pf_3_sa_9DataArray_22read_binary(struct __pyx_obj_3_sa_Da
  */
   ((struct __pyx_vtabstruct_3_sa_DataArray *)__pyx_v_self->__pyx_vtab)->read_handle(__pyx_v_self, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":98
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":98
  *         f = fopen(filename, "r")
  *         self.read_handle(f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -9402,7 +9383,7 @@ static PyObject *__pyx_pf_3_sa_9DataArray_22read_binary(struct __pyx_obj_3_sa_Da
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":100
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":100
  *         fclose(f)
  * 
  *     cdef void read_handle(self, FILE* f):             # <<<<<<<<<<<<<<
@@ -9427,7 +9408,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("read_handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":105
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":105
  *         cdef char* word
  * 
  *         self.data.read_handle(f)             # <<<<<<<<<<<<<<
@@ -9436,7 +9417,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->data->__pyx_vtab)->read_handle(__pyx_v_self->data, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":106
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":106
  * 
  *         self.data.read_handle(f)
  *         self.sent_index.read_handle(f)             # <<<<<<<<<<<<<<
@@ -9445,7 +9426,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_index->__pyx_vtab)->read_handle(__pyx_v_self->sent_index, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":107
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":107
  *         self.data.read_handle(f)
  *         self.sent_index.read_handle(f)
  *         self.sent_id.read_handle(f)             # <<<<<<<<<<<<<<
@@ -9454,7 +9435,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_id->__pyx_vtab)->read_handle(__pyx_v_self->sent_id, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":108
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":108
  *         self.sent_index.read_handle(f)
  *         self.sent_id.read_handle(f)
  *         fread(&(num_words), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -9463,7 +9444,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
  */
   fread((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":109
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":109
  *         self.sent_id.read_handle(f)
  *         fread(&(num_words), sizeof(int), 1, f)
  *         for i in range(num_words):             # <<<<<<<<<<<<<<
@@ -9474,7 +9455,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
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     __pyx_v_i = __pyx_t_2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":110
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":110
  *         fread(&(num_words), sizeof(int), 1, f)
  *         for i in range(num_words):
  *             fread(&(word_len), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -9483,7 +9464,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
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     fread((&__pyx_v_word_len), (sizeof(int)), 1, __pyx_v_f);
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":111
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":111
  *         for i in range(num_words):
  *             fread(&(word_len), sizeof(int), 1, f)
  *             word = <char*> malloc (word_len * sizeof(char))             # <<<<<<<<<<<<<<
@@ -9492,7 +9473,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
  */
     __pyx_v_word = ((char *)malloc((__pyx_v_word_len * (sizeof(char)))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":112
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":112
  *             fread(&(word_len), sizeof(int), 1, f)
  *             word = <char*> malloc (word_len * sizeof(char))
  *             fread(word, sizeof(char), word_len, f)             # <<<<<<<<<<<<<<
@@ -9501,7 +9482,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
  */
     fread(__pyx_v_word, (sizeof(char)), __pyx_v_word_len, __pyx_v_f);
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":113
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":113
  *             word = <char*> malloc (word_len * sizeof(char))
  *             fread(word, sizeof(char), word_len, f)
  *             self.word2id[word] = len(self.id2word)             # <<<<<<<<<<<<<<
@@ -9520,7 +9501,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
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     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":114
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":114
  *             fread(word, sizeof(char), word_len, f)
  *             self.word2id[word] = len(self.id2word)
  *             self.id2word.append(word)             # <<<<<<<<<<<<<<
@@ -9534,7 +9515,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
     __Pyx_DECREF(((PyObject *)__pyx_t_3)); __pyx_t_3 = 0;
     __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":115
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":115
  *             self.word2id[word] = len(self.id2word)
  *             self.id2word.append(word)
  *             free(word)             # <<<<<<<<<<<<<<
@@ -9544,7 +9525,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
     free(__pyx_v_word);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":116
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":116
  *             self.id2word.append(word)
  *             free(word)
  *         if len(self.sent_id) == 0:             # <<<<<<<<<<<<<<
@@ -9558,7 +9539,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
   __pyx_t_6 = (__pyx_t_4 == 0);
   if (__pyx_t_6) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":117
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":117
  *             free(word)
  *         if len(self.sent_id) == 0:
  *             self.use_sent_id = False             # <<<<<<<<<<<<<<
@@ -9570,7 +9551,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":119
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":119
  *             self.use_sent_id = False
  *         else:
  *             self.use_sent_id = True             # <<<<<<<<<<<<<<
@@ -9590,7 +9571,7 @@ static void __pyx_f_3_sa_9DataArray_read_handle(struct __pyx_obj_3_sa_DataArray
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":121
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":121
  *             self.use_sent_id = True
  * 
  *     cdef void write_handle(self, FILE* f):             # <<<<<<<<<<<<<<
@@ -9614,7 +9595,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
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   __Pyx_RefNannySetupContext("write_handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":125
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":125
  *         cdef int num_words
  * 
  *         self.data.write_handle(f)             # <<<<<<<<<<<<<<
@@ -9623,7 +9604,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->data->__pyx_vtab)->write_handle(__pyx_v_self->data, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":126
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":126
  * 
  *         self.data.write_handle(f)
  *         self.sent_index.write_handle(f)             # <<<<<<<<<<<<<<
@@ -9632,7 +9613,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_index->__pyx_vtab)->write_handle(__pyx_v_self->sent_index, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":127
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":127
  *         self.data.write_handle(f)
  *         self.sent_index.write_handle(f)
  *         self.sent_id.write_handle(f)             # <<<<<<<<<<<<<<
@@ -9641,7 +9622,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_id->__pyx_vtab)->write_handle(__pyx_v_self->sent_id, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":128
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":128
  *         self.sent_index.write_handle(f)
  *         self.sent_id.write_handle(f)
  *         num_words = len(self.id2word) - 2             # <<<<<<<<<<<<<<
@@ -9654,7 +9635,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   __pyx_v_num_words = (__pyx_t_2 - 2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":129
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":129
  *         self.sent_id.write_handle(f)
  *         num_words = len(self.id2word) - 2
  *         fwrite(&(num_words), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -9663,7 +9644,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
  */
   fwrite((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":130
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":130
  *         num_words = len(self.id2word) - 2
  *         fwrite(&(num_words), sizeof(int), 1, f)
  *         for word in self.id2word[2:]:             # <<<<<<<<<<<<<<
@@ -9684,18 +9665,10 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
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-      #if CYTHON_COMPILING_IN_CPYTHON
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-      #else
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-      #endif
+      __pyx_t_1 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_2); __Pyx_INCREF(__pyx_t_1); __pyx_t_2++;
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-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_2); __Pyx_INCREF(__pyx_t_1); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 130; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_1 = PySequence_ITEM(__pyx_t_3, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 130; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_2); __Pyx_INCREF(__pyx_t_1); __pyx_t_2++;
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       __pyx_t_1 = __pyx_t_4(__pyx_t_3);
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@@ -9711,7 +9684,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
     __pyx_v_word = __pyx_t_1;
     __pyx_t_1 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":131
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":131
  *         fwrite(&(num_words), sizeof(int), 1, f)
  *         for word in self.id2word[2:]:
  *             word_len = len(word) + 1             # <<<<<<<<<<<<<<
@@ -9721,7 +9694,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
     __pyx_t_5 = PyObject_Length(__pyx_v_word); if (unlikely(__pyx_t_5 == -1)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_word_len = (__pyx_t_5 + 1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":132
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":132
  *         for word in self.id2word[2:]:
  *             word_len = len(word) + 1
  *             fwrite(&(word_len), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -9730,7 +9703,7 @@ static void __pyx_f_3_sa_9DataArray_write_handle(struct __pyx_obj_3_sa_DataArray
  */
     fwrite((&__pyx_v_word_len), (sizeof(int)), 1, __pyx_v_f);
 
-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":133
+    /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":133
  *             word_len = len(word) + 1
  *             fwrite(&(word_len), sizeof(int), 1, f)
  *             fwrite(<char *>word, sizeof(char), word_len, f)             # <<<<<<<<<<<<<<
@@ -9773,7 +9746,7 @@ static PyObject *__pyx_pw_3_sa_9DataArray_25write_binary(PyObject *__pyx_v_self,
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":135
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":135
  *             fwrite(<char *>word, sizeof(char), word_len, f)
  * 
  *     def write_binary(self, char* filename):             # <<<<<<<<<<<<<<
@@ -9787,7 +9760,7 @@ static PyObject *__pyx_pf_3_sa_9DataArray_24write_binary(struct __pyx_obj_3_sa_D
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("write_binary", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":137
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":137
  *     def write_binary(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "w")             # <<<<<<<<<<<<<<
@@ -9796,7 +9769,7 @@ static PyObject *__pyx_pf_3_sa_9DataArray_24write_binary(struct __pyx_obj_3_sa_D
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__w);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":138
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":138
  *         cdef FILE* f
  *         f = fopen(filename, "w")
  *         self.write_handle(f)             # <<<<<<<<<<<<<<
@@ -9805,7 +9778,7 @@ static PyObject *__pyx_pf_3_sa_9DataArray_24write_binary(struct __pyx_obj_3_sa_D
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   ((struct __pyx_vtabstruct_3_sa_DataArray *)__pyx_v_self->__pyx_vtab)->write_handle(__pyx_v_self, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":139
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":139
  *         f = fopen(filename, "w")
  *         self.write_handle(f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -9831,7 +9804,7 @@ static PyObject *__pyx_pw_3_sa_9DataArray_27write_enhanced_handle(PyObject *__py
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":141
+/* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":141
  *         fclose(f)
  * 
  *     def write_enhanced_handle(self, f):             # <<<<<<<<<<<<<<
@@ -9855,7 +9828,7 @@ static PyObject *__pyx_pf_3_sa_9DataArray_26write_enhanced_handle(struct __pyx_o
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   __Pyx_RefNannySetupContext("write_enhanced_handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":142
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":142
  * 
  *     def write_enhanced_handle(self, f):
  *         for i in self.data:             # <<<<<<<<<<<<<<
@@ -9873,18 +9846,10 @@ static PyObject *__pyx_pf_3_sa_9DataArray_26write_enhanced_handle(struct __pyx_o
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       if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
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-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 142; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
     } else if (!__pyx_t_3 && PyTuple_CheckExact(__pyx_t_1)) {
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-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":143
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-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":145
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-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":146
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-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":147
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-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":148
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-    /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":149
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-        /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":156
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-/* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":13
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  *         cdef int arr_len
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@@ -11078,7 +11019,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_
   __pyx_v_sent_links = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":29
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":29
  *         cdef int arr_len
  *         sent_links = IntList()
  *         arr = self._get_sent_links(sent_id, &arr_len)             # <<<<<<<<<<<<<<
@@ -11087,7 +11028,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_
  */
   __pyx_v_arr = ((struct __pyx_vtabstruct_3_sa_Alignment *)__pyx_v_self->__pyx_vtab)->_get_sent_links(__pyx_v_self, __pyx_v_sent_id, (&__pyx_v_arr_len));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":30
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":30
  *         sent_links = IntList()
  *         arr = self._get_sent_links(sent_id, &arr_len)
  *         sent_links._extend_arr(arr, arr_len*2)             # <<<<<<<<<<<<<<
@@ -11096,7 +11037,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_sent_links->__pyx_vtab)->_extend_arr(__pyx_v_sent_links, __pyx_v_arr, (__pyx_v_arr_len * 2));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":31
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":31
  *         arr = self._get_sent_links(sent_id, &arr_len)
  *         sent_links._extend_arr(arr, arr_len*2)
  *         free(arr)             # <<<<<<<<<<<<<<
@@ -11105,7 +11046,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_
  */
   free(__pyx_v_arr);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":32
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":32
  *         sent_links._extend_arr(arr, arr_len*2)
  *         free(arr)
  *         return sent_links             # <<<<<<<<<<<<<<
@@ -11130,7 +11071,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":34
+/* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":34
  *         return sent_links
  * 
  *     cdef int* _get_sent_links(self, int sent_id, int* num_links):             # <<<<<<<<<<<<<<
@@ -11152,7 +11093,7 @@ static int *__pyx_f_3_sa_9Alignment__get_sent_links(struct __pyx_obj_3_sa_Alignm
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   __Pyx_RefNannySetupContext("_get_sent_links", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":37
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":37
  *         cdef int* sent_links
  *         cdef int i, start, end
  *         start = self.sent_index.arr[sent_id]             # <<<<<<<<<<<<<<
@@ -11161,7 +11102,7 @@ static int *__pyx_f_3_sa_9Alignment__get_sent_links(struct __pyx_obj_3_sa_Alignm
  */
   __pyx_v_start = (__pyx_v_self->sent_index->arr[__pyx_v_sent_id]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":38
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":38
  *         cdef int i, start, end
  *         start = self.sent_index.arr[sent_id]
  *         end = self.sent_index.arr[sent_id+1]             # <<<<<<<<<<<<<<
@@ -11170,7 +11111,7 @@ static int *__pyx_f_3_sa_9Alignment__get_sent_links(struct __pyx_obj_3_sa_Alignm
  */
   __pyx_v_end = (__pyx_v_self->sent_index->arr[(__pyx_v_sent_id + 1)]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":39
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":39
  *         start = self.sent_index.arr[sent_id]
  *         end = self.sent_index.arr[sent_id+1]
  *         num_links[0] = end - start             # <<<<<<<<<<<<<<
@@ -11179,7 +11120,7 @@ static int *__pyx_f_3_sa_9Alignment__get_sent_links(struct __pyx_obj_3_sa_Alignm
  */
   (__pyx_v_num_links[0]) = (__pyx_v_end - __pyx_v_start);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":40
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":40
  *         end = self.sent_index.arr[sent_id+1]
  *         num_links[0] = end - start
  *         sent_links = <int*> malloc(2*num_links[0]*sizeof(int))             # <<<<<<<<<<<<<<
@@ -11188,7 +11129,7 @@ static int *__pyx_f_3_sa_9Alignment__get_sent_links(struct __pyx_obj_3_sa_Alignm
  */
   __pyx_v_sent_links = ((int *)malloc(((2 * (__pyx_v_num_links[0])) * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":41
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":41
  *         num_links[0] = end - start
  *         sent_links = <int*> malloc(2*num_links[0]*sizeof(int))
  *         for i from 0 <= i < num_links[0]:             # <<<<<<<<<<<<<<
@@ -11198,7 +11139,7 @@ static int *__pyx_f_3_sa_9Alignment__get_sent_links(struct __pyx_obj_3_sa_Alignm
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   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":42
+    /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":42
  *         sent_links = <int*> malloc(2*num_links[0]*sizeof(int))
  *         for i from 0 <= i < num_links[0]:
  *             self._unlink(self.links.arr[start + i], sent_links + (2*i), sent_links + (2*i) + 1)             # <<<<<<<<<<<<<<
@@ -11210,7 +11151,7 @@ static int *__pyx_f_3_sa_9Alignment__get_sent_links(struct __pyx_obj_3_sa_Alignm
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":43
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":43
  *         for i from 0 <= i < num_links[0]:
  *             self._unlink(self.links.arr[start + i], sent_links + (2*i), sent_links + (2*i) + 1)
  *         return sent_links             # <<<<<<<<<<<<<<
@@ -11236,14 +11177,14 @@ static int __pyx_pw_3_sa_9Alignment_5__cinit__(PyObject *__pyx_v_self, PyObject
 static int __pyx_pw_3_sa_9Alignment_5__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   PyObject *__pyx_v_from_binary = 0;
   PyObject *__pyx_v_from_text = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_binary,&__pyx_n_s__from_text,0};
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-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_binary,&__pyx_n_s__from_text,0};
     PyObject* values[2] = {0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":45
+    /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":45
  *         return sent_links
  * 
  *     def __cinit__(self, from_binary=None, from_text=None):             # <<<<<<<<<<<<<<
@@ -11313,7 +11254,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
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   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":46
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":46
  * 
  *     def __cinit__(self, from_binary=None, from_text=None):
  *         self.links = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -11328,7 +11269,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
   __pyx_v_self->links = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":47
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":47
  *     def __cinit__(self, from_binary=None, from_text=None):
  *         self.links = IntList(1000,1000)
  *         self.sent_index = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -11343,7 +11284,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
   __pyx_v_self->sent_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":48
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":48
  *         self.links = IntList(1000,1000)
  *         self.sent_index = IntList(1000,1000)
  *         if from_binary:             # <<<<<<<<<<<<<<
@@ -11353,7 +11294,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
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   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":49
+    /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":49
  *         self.sent_index = IntList(1000,1000)
  *         if from_binary:
  *             self.read_binary(from_binary)             # <<<<<<<<<<<<<<
@@ -11375,7 +11316,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":50
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":50
  *         if from_binary:
  *             self.read_binary(from_binary)
  *         elif from_text:             # <<<<<<<<<<<<<<
@@ -11385,7 +11326,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
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   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":51
+    /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":51
  *             self.read_binary(from_binary)
  *         elif from_text:
  *             self.read_text(from_text)             # <<<<<<<<<<<<<<
@@ -11442,7 +11383,7 @@ static PyObject *__pyx_pw_3_sa_9Alignment_7read_text(PyObject *__pyx_v_self, PyO
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":53
+/* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":53
  *             self.read_text(from_text)
  * 
  *     def read_text(self, char* filename):             # <<<<<<<<<<<<<<
@@ -11484,7 +11425,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":54
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":54
  * 
  *     def read_text(self, char* filename):
  *         with gzip_or_text(filename) as f:             # <<<<<<<<<<<<<<
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           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":55
+          /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":55
  *     def read_text(self, char* filename):
  *         with gzip_or_text(filename) as f:
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@@ -11542,18 +11483,10 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
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-              #if CYTHON_COMPILING_IN_CPYTHON
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-              #else
-              __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_1)) {
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-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++;
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               __pyx_t_2 = __pyx_t_9(__pyx_t_1);
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@@ -11569,7 +11502,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
             __pyx_v_line = __pyx_t_2;
             __pyx_t_2 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":56
+            /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":56
  *         with gzip_or_text(filename) as f:
  *             for line in f:
  *                 self.sent_index.append(len(self.links))             # <<<<<<<<<<<<<<
@@ -11587,7 +11520,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
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             __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":57
+            /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":57
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  *                 self.sent_index.append(len(self.links))
  *                 pairs = line.split()             # <<<<<<<<<<<<<<
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             __pyx_v_pairs = __pyx_t_2;
             __pyx_t_2 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":58
+            /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":58
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  *                 pairs = line.split()
  *                 for pair in pairs:             # <<<<<<<<<<<<<<
@@ -11621,18 +11554,10 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
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-                #if CYTHON_COMPILING_IN_CPYTHON
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-                #else
-                __pyx_t_3 = PySequence_ITEM(__pyx_t_2, __pyx_t_10); __pyx_t_10++; if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-                #endif
+                __pyx_t_3 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_10); __Pyx_INCREF(__pyx_t_3); __pyx_t_10++;
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-                #if CYTHON_COMPILING_IN_CPYTHON
-                __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_10); __Pyx_INCREF(__pyx_t_3); __pyx_t_10++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-                #else
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-                #endif
+                __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_10); __Pyx_INCREF(__pyx_t_3); __pyx_t_10++;
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@@ -11648,7 +11573,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
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               __pyx_t_3 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":59
+              /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":59
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-                }
-                #if CYTHON_COMPILING_IN_CPYTHON
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+                  if (unlikely(PyTuple_GET_SIZE(sequence) != 2)) {
+                    if (PyTuple_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                    else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                    {__pyx_filename = __pyx_f[4]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+                  }
                   __pyx_t_3 = PyTuple_GET_ITEM(sequence, 0); 
                   __pyx_t_13 = PyTuple_GET_ITEM(sequence, 1); 
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+                    if (PyList_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                    else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                    {__pyx_filename = __pyx_f[4]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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-              /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":60
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-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":61
+          /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":61
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-        /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":54
+        /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":54
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-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":63
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":65
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":66
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":66
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":67
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":67
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":68
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":68
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  *         self.sent_index.read_handle(f)
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-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":70
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":71
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-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":72
+          /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":72
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-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":73
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-            /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":74
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-              /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":75
+              /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":75
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-              /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":76
+              /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":76
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-            /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":77
+            /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":77
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-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":78
+          /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":78
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-        /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":71
+        /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":71
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-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":80
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":82
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":83
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":83
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":84
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":84
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-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":85
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":85
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-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":89
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@@ -12551,7 +12454,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
             __pyx_v_link = __pyx_t_1;
             __pyx_t_1 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":91
+            /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":91
  *             sent_num = 1
  *             for link in self.links:
  *                 f.write("%d " % link)             # <<<<<<<<<<<<<<
@@ -12575,7 +12478,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
           }
           __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":92
+          /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":92
  *             for link in self.links:
  *                 f.write("%d " % link)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -12589,7 +12492,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
           __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":93
+          /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":93
  *                 f.write("%d " % link)
  *             f.write("\n")
  *             for i in self.sent_index:             # <<<<<<<<<<<<<<
@@ -12607,18 +12510,10 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
           for (;;) {
             if (!__pyx_t_9 && PyList_CheckExact(__pyx_t_2)) {
               if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_2)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 93; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 93; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_2)) {
               if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 93; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 93; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++;
             } else {
               __pyx_t_4 = __pyx_t_9(__pyx_t_2);
               if (unlikely(!__pyx_t_4)) {
@@ -12634,7 +12529,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
             __pyx_v_i = __pyx_t_4;
             __pyx_t_4 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":94
+            /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":94
  *             f.write("\n")
  *             for i in self.sent_index:
  *                 f.write("%d " % i)             # <<<<<<<<<<<<<<
@@ -12658,7 +12553,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
           }
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":95
+          /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":95
  *             for i in self.sent_index:
  *                 f.write("%d " % i)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -12682,7 +12577,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
         __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
         __Pyx_XDECREF(__pyx_t_10); __pyx_t_10 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":88
+        /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":88
  * 
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -12792,7 +12687,7 @@ static PyObject *__pyx_pw_3_sa_9Alignment_17alignment(PyObject *__pyx_v_self, Py
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":97
+/* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":97
  *             f.write("\n")
  * 
  *     def alignment(self, i):             # <<<<<<<<<<<<<<
@@ -12818,7 +12713,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_16alignment(struct __pyx_obj_3_sa_Alig
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("alignment", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":100
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":100
  *         """Return all (e,f) pairs for sentence i"""
  *         cdef int j, start, end
  *         result = []             # <<<<<<<<<<<<<<
@@ -12830,7 +12725,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_16alignment(struct __pyx_obj_3_sa_Alig
   __pyx_v_result = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":101
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":101
  *         cdef int j, start, end
  *         result = []
  *         start = self.sent_index.arr[i]             # <<<<<<<<<<<<<<
@@ -12840,7 +12735,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_16alignment(struct __pyx_obj_3_sa_Alig
   __pyx_t_2 = __Pyx_PyIndex_AsSsize_t(__pyx_v_i); if (unlikely((__pyx_t_2 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 101; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_start = (__pyx_v_self->sent_index->arr[__pyx_t_2]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":102
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":102
  *         result = []
  *         start = self.sent_index.arr[i]
  *         end = self.sent_index.arr[i+1]             # <<<<<<<<<<<<<<
@@ -12853,7 +12748,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_16alignment(struct __pyx_obj_3_sa_Alig
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   __pyx_v_end = (__pyx_v_self->sent_index->arr[__pyx_t_2]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":103
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":103
  *         start = self.sent_index.arr[i]
  *         end = self.sent_index.arr[i+1]
  *         for j from start <= j < end:             # <<<<<<<<<<<<<<
@@ -12863,7 +12758,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_16alignment(struct __pyx_obj_3_sa_Alig
   __pyx_t_3 = __pyx_v_end;
   for (__pyx_v_j = __pyx_v_start; __pyx_v_j < __pyx_t_3; __pyx_v_j++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":104
+    /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":104
  *         end = self.sent_index.arr[i+1]
  *         for j from start <= j < end:
  *             result.append(self.unlink(self.links.arr[j]))             # <<<<<<<<<<<<<<
@@ -12886,7 +12781,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_16alignment(struct __pyx_obj_3_sa_Alig
     __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":105
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":105
  *         for j from start <= j < end:
  *             result.append(self.unlink(self.links.arr[j]))
  *         return result             # <<<<<<<<<<<<<<
@@ -12911,7 +12806,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_16alignment(struct __pyx_obj_3_sa_Alig
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":15
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":15
  *     int val
  * 
  * cdef _node* new_node(int key):             # <<<<<<<<<<<<<<
@@ -12925,7 +12820,7 @@ static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int __pyx_v_key) {
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("new_node", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":17
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":17
  * cdef _node* new_node(int key):
  *     cdef _node* n
  *     n = <_node*> malloc(sizeof(_node))             # <<<<<<<<<<<<<<
@@ -12934,7 +12829,7 @@ static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int __pyx_v_key) {
  */
   __pyx_v_n = ((struct __pyx_t_3_sa__node *)malloc((sizeof(struct __pyx_t_3_sa__node))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":18
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":18
  *     cdef _node* n
  *     n = <_node*> malloc(sizeof(_node))
  *     n.smaller = NULL             # <<<<<<<<<<<<<<
@@ -12943,7 +12838,7 @@ static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int __pyx_v_key) {
  */
   __pyx_v_n->smaller = NULL;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":19
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":19
  *     n = <_node*> malloc(sizeof(_node))
  *     n.smaller = NULL
  *     n.bigger = NULL             # <<<<<<<<<<<<<<
@@ -12952,7 +12847,7 @@ static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int __pyx_v_key) {
  */
   __pyx_v_n->bigger = NULL;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":20
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":20
  *     n.smaller = NULL
  *     n.bigger = NULL
  *     n.key = key             # <<<<<<<<<<<<<<
@@ -12961,7 +12856,7 @@ static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int __pyx_v_key) {
  */
   __pyx_v_n->key = __pyx_v_key;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":21
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":21
  *     n.bigger = NULL
  *     n.key = key
  *     n.val = 0             # <<<<<<<<<<<<<<
@@ -12970,7 +12865,7 @@ static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int __pyx_v_key) {
  */
   __pyx_v_n->val = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":22
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":22
  *     n.key = key
  *     n.val = 0
  *     return n             # <<<<<<<<<<<<<<
@@ -12986,7 +12881,7 @@ static struct __pyx_t_3_sa__node *__pyx_f_3_sa_new_node(int __pyx_v_key) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":25
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":25
  * 
  * 
  * cdef del_node(_node* n):             # <<<<<<<<<<<<<<
@@ -13004,7 +12899,7 @@ static PyObject *__pyx_f_3_sa_del_node(struct __pyx_t_3_sa__node *__pyx_v_n) {
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   __Pyx_RefNannySetupContext("del_node", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":26
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":26
  * 
  * cdef del_node(_node* n):
  *     if n.smaller != NULL:             # <<<<<<<<<<<<<<
@@ -13014,7 +12909,7 @@ static PyObject *__pyx_f_3_sa_del_node(struct __pyx_t_3_sa__node *__pyx_v_n) {
   __pyx_t_1 = (__pyx_v_n->smaller != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":27
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":27
  * cdef del_node(_node* n):
  *     if n.smaller != NULL:
  *         del_node(n.smaller)             # <<<<<<<<<<<<<<
@@ -13028,7 +12923,7 @@ static PyObject *__pyx_f_3_sa_del_node(struct __pyx_t_3_sa__node *__pyx_v_n) {
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":28
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":28
  *     if n.smaller != NULL:
  *         del_node(n.smaller)
  *     if n.bigger != NULL:             # <<<<<<<<<<<<<<
@@ -13038,7 +12933,7 @@ static PyObject *__pyx_f_3_sa_del_node(struct __pyx_t_3_sa__node *__pyx_v_n) {
   __pyx_t_1 = (__pyx_v_n->bigger != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":29
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":29
  *         del_node(n.smaller)
  *     if n.bigger != NULL:
  *         del_node(n.bigger)             # <<<<<<<<<<<<<<
@@ -13052,7 +12947,7 @@ static PyObject *__pyx_f_3_sa_del_node(struct __pyx_t_3_sa__node *__pyx_v_n) {
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":30
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":30
  *     if n.bigger != NULL:
  *         del_node(n.bigger)
  *     free(n)             # <<<<<<<<<<<<<<
@@ -13073,7 +12968,7 @@ static PyObject *__pyx_f_3_sa_del_node(struct __pyx_t_3_sa__node *__pyx_v_n) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":32
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":32
  *     free(n)
  * 
  * cdef int* get_val(_node* n, int key):             # <<<<<<<<<<<<<<
@@ -13087,7 +12982,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("get_val", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":33
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":33
  * 
  * cdef int* get_val(_node* n, int key):
  *     if key == n.key:             # <<<<<<<<<<<<<<
@@ -13097,7 +12992,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
   __pyx_t_1 = (__pyx_v_key == __pyx_v_n->key);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":34
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":34
  * cdef int* get_val(_node* n, int key):
  *     if key == n.key:
  *         return &n.val             # <<<<<<<<<<<<<<
@@ -13109,7 +13004,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":35
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":35
  *     if key == n.key:
  *         return &n.val
  *     elif key < n.key:             # <<<<<<<<<<<<<<
@@ -13119,7 +13014,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
   __pyx_t_1 = (__pyx_v_key < __pyx_v_n->key);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":36
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":36
  *         return &n.val
  *     elif key < n.key:
  *         if n.smaller == NULL:             # <<<<<<<<<<<<<<
@@ -13129,7 +13024,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
     __pyx_t_1 = (__pyx_v_n->smaller == NULL);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":37
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":37
  *     elif key < n.key:
  *         if n.smaller == NULL:
  *             n.smaller = new_node(key)             # <<<<<<<<<<<<<<
@@ -13138,7 +13033,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
  */
       __pyx_v_n->smaller = __pyx_f_3_sa_new_node(__pyx_v_key);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":38
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":38
  *         if n.smaller == NULL:
  *             n.smaller = new_node(key)
  *             return &(n.smaller.val)             # <<<<<<<<<<<<<<
@@ -13151,7 +13046,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
     }
     __pyx_L4:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":39
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":39
  *             n.smaller = new_node(key)
  *             return &(n.smaller.val)
  *         return get_val(n.smaller, key)             # <<<<<<<<<<<<<<
@@ -13164,7 +13059,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":41
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":41
  *         return get_val(n.smaller, key)
  *     else:
  *         if n.bigger == NULL:             # <<<<<<<<<<<<<<
@@ -13174,7 +13069,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
     __pyx_t_1 = (__pyx_v_n->bigger == NULL);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":42
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":42
  *     else:
  *         if n.bigger == NULL:
  *             n.bigger = new_node(key)             # <<<<<<<<<<<<<<
@@ -13183,7 +13078,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
  */
       __pyx_v_n->bigger = __pyx_f_3_sa_new_node(__pyx_v_key);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":43
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":43
  *         if n.bigger == NULL:
  *             n.bigger = new_node(key)
  *             return &(n.bigger.val)             # <<<<<<<<<<<<<<
@@ -13196,7 +13091,7 @@ static int *__pyx_f_3_sa_get_val(struct __pyx_t_3_sa__node *__pyx_v_n, int __pyx
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":44
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":44
  *             n.bigger = new_node(key)
  *             return &(n.bigger.val)
  *         return get_val(n.bigger, key)             # <<<<<<<<<<<<<<
@@ -13223,14 +13118,14 @@ static int __pyx_pw_3_sa_5BiLex_1__cinit__(PyObject *__pyx_v_self, PyObject *__p
   PyObject *__pyx_v_earray = 0;
   PyObject *__pyx_v_fsarray = 0;
   PyObject *__pyx_v_alignment = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_text,&__pyx_n_s__from_data,&__pyx_n_s__from_binary,&__pyx_n_s__earray,&__pyx_n_s__fsarray,&__pyx_n_s__alignment,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_text,&__pyx_n_s__from_data,&__pyx_n_s__from_binary,&__pyx_n_s__earray,&__pyx_n_s__fsarray,&__pyx_n_s__alignment,0};
     PyObject* values[6] = {0,0,0,0,0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":54
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":54
  *     cdef id2eword, id2fword, eword2id, fword2id
  * 
  *     def __cinit__(self, from_text=None, from_data=False, from_binary=None,             # <<<<<<<<<<<<<<
@@ -13241,7 +13136,7 @@ static int __pyx_pw_3_sa_5BiLex_1__cinit__(PyObject *__pyx_v_self, PyObject *__p
     values[1] = __pyx_k_41;
     values[2] = ((PyObject *)Py_None);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":55
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":55
  * 
  *     def __cinit__(self, from_text=None, from_data=False, from_binary=None,
  *             earray=None, fsarray=None, alignment=None):             # <<<<<<<<<<<<<<
@@ -13332,7 +13227,7 @@ static int __pyx_pw_3_sa_5BiLex_1__cinit__(PyObject *__pyx_v_self, PyObject *__p
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":54
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":54
  *     cdef id2eword, id2fword, eword2id, fword2id
  * 
  *     def __cinit__(self, from_text=None, from_data=False, from_binary=None,             # <<<<<<<<<<<<<<
@@ -13353,7 +13248,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":56
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":56
  *     def __cinit__(self, from_text=None, from_data=False, from_binary=None,
  *             earray=None, fsarray=None, alignment=None):
  *         self.id2eword = []             # <<<<<<<<<<<<<<
@@ -13368,7 +13263,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->id2eword = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":57
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":57
  *             earray=None, fsarray=None, alignment=None):
  *         self.id2eword = []
  *         self.id2fword = []             # <<<<<<<<<<<<<<
@@ -13383,7 +13278,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->id2fword = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":58
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":58
  *         self.id2eword = []
  *         self.id2fword = []
  *         self.eword2id = {}             # <<<<<<<<<<<<<<
@@ -13398,7 +13293,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->eword2id = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":59
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":59
  *         self.id2fword = []
  *         self.eword2id = {}
  *         self.fword2id = {}             # <<<<<<<<<<<<<<
@@ -13413,7 +13308,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->fword2id = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":60
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":60
  *         self.eword2id = {}
  *         self.fword2id = {}
  *         self.e_index = IntList()             # <<<<<<<<<<<<<<
@@ -13428,7 +13323,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->e_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":61
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":61
  *         self.fword2id = {}
  *         self.e_index = IntList()
  *         self.f_index = IntList()             # <<<<<<<<<<<<<<
@@ -13443,7 +13338,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->f_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":62
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":62
  *         self.e_index = IntList()
  *         self.f_index = IntList()
  *         self.col1 = FloatList()             # <<<<<<<<<<<<<<
@@ -13458,7 +13353,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->col1 = ((struct __pyx_obj_3_sa_FloatList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":63
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":63
  *         self.f_index = IntList()
  *         self.col1 = FloatList()
  *         self.col2 = FloatList()             # <<<<<<<<<<<<<<
@@ -13473,7 +13368,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_v_self->col2 = ((struct __pyx_obj_3_sa_FloatList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":64
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":64
  *         self.col1 = FloatList()
  *         self.col2 = FloatList()
  *         if from_binary:             # <<<<<<<<<<<<<<
@@ -13483,7 +13378,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_from_binary); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 64; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":65
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":65
  *         self.col2 = FloatList()
  *         if from_binary:
  *             self.read_binary(from_binary)             # <<<<<<<<<<<<<<
@@ -13505,7 +13400,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":66
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":66
  *         if from_binary:
  *             self.read_binary(from_binary)
  *         elif from_data:             # <<<<<<<<<<<<<<
@@ -13515,7 +13410,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_from_data); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 66; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":67
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":67
  *             self.read_binary(from_binary)
  *         elif from_data:
  *             self.compute_from_data(fsarray, earray, alignment)             # <<<<<<<<<<<<<<
@@ -13541,7 +13436,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":69
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":69
  *             self.compute_from_data(fsarray, earray, alignment)
  *         else:
  *             self.read_text(from_text)             # <<<<<<<<<<<<<<
@@ -13577,7 +13472,7 @@ static int __pyx_pf_3_sa_5BiLex___cinit__(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":72
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":72
  * 
  * 
  *     cdef compute_from_data(self, SuffixArray fsa, DataArray eda, Alignment aa):             # <<<<<<<<<<<<<<
@@ -13631,7 +13526,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("compute_from_data", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":79
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":79
  *         cdef int null_word
  * 
  *         null_word = 0             # <<<<<<<<<<<<<<
@@ -13640,7 +13535,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   __pyx_v_null_word = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":80
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":80
  * 
  *         null_word = 0
  *         for word in fsa.darray.id2word: # I miss list comprehensions             # <<<<<<<<<<<<<<
@@ -13658,18 +13553,10 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   for (;;) {
     if (!__pyx_t_3 && PyList_CheckExact(__pyx_t_1)) {
       if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 80; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 80; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
     } else if (!__pyx_t_3 && PyTuple_CheckExact(__pyx_t_1)) {
       if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 80; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 80; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
     } else {
       __pyx_t_4 = __pyx_t_3(__pyx_t_1);
       if (unlikely(!__pyx_t_4)) {
@@ -13685,7 +13572,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_v_word = __pyx_t_4;
     __pyx_t_4 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":81
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":81
  *         null_word = 0
  *         for word in fsa.darray.id2word: # I miss list comprehensions
  *             self.id2fword.append(word)             # <<<<<<<<<<<<<<
@@ -13698,7 +13585,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   }
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":82
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":82
  *         for word in fsa.darray.id2word: # I miss list comprehensions
  *             self.id2fword.append(word)
  *         self.id2fword[null_word] = "NULL"             # <<<<<<<<<<<<<<
@@ -13707,7 +13594,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   if (__Pyx_SetItemInt(__pyx_v_self->id2fword, __pyx_v_null_word, ((PyObject *)__pyx_n_s__NULL), sizeof(int), PyInt_FromLong) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 82; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":83
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":83
  *             self.id2fword.append(word)
  *         self.id2fword[null_word] = "NULL"
  *         for id, word in enumerate(self.id2fword):             # <<<<<<<<<<<<<<
@@ -13727,18 +13614,10 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   for (;;) {
     if (!__pyx_t_3 && PyList_CheckExact(__pyx_t_4)) {
       if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_4)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 83; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 83; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++;
     } else if (!__pyx_t_3 && PyTuple_CheckExact(__pyx_t_4)) {
       if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 83; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 83; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++;
     } else {
       __pyx_t_5 = __pyx_t_3(__pyx_t_4);
       if (unlikely(!__pyx_t_5)) {
@@ -13762,7 +13641,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_t_1 = __pyx_t_5;
     __pyx_t_5 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":84
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":84
  *         self.id2fword[null_word] = "NULL"
  *         for id, word in enumerate(self.id2fword):
  *             self.fword2id[word] = id             # <<<<<<<<<<<<<<
@@ -13774,7 +13653,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":86
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":86
  *             self.fword2id[word] = id
  * 
  *         for word in eda.id2word:             # <<<<<<<<<<<<<<
@@ -13792,18 +13671,10 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   for (;;) {
     if (!__pyx_t_3 && PyList_CheckExact(__pyx_t_1)) {
       if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
     } else if (!__pyx_t_3 && PyTuple_CheckExact(__pyx_t_1)) {
       if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 86; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
     } else {
       __pyx_t_4 = __pyx_t_3(__pyx_t_1);
       if (unlikely(!__pyx_t_4)) {
@@ -13819,7 +13690,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_v_word = __pyx_t_4;
     __pyx_t_4 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":87
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":87
  * 
  *         for word in eda.id2word:
  *             self.id2eword.append(word)             # <<<<<<<<<<<<<<
@@ -13832,7 +13703,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   }
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":88
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":88
  *         for word in eda.id2word:
  *             self.id2eword.append(word)
  *         self.id2eword[null_word] = "NULL"             # <<<<<<<<<<<<<<
@@ -13841,7 +13712,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   if (__Pyx_SetItemInt(__pyx_v_self->id2eword, __pyx_v_null_word, ((PyObject *)__pyx_n_s__NULL), sizeof(int), PyInt_FromLong) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 88; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":89
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":89
  *             self.id2eword.append(word)
  *         self.id2eword[null_word] = "NULL"
  *         for id, word in enumerate(self.id2eword):             # <<<<<<<<<<<<<<
@@ -13861,18 +13732,10 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   for (;;) {
     if (!__pyx_t_3 && PyList_CheckExact(__pyx_t_4)) {
       if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_4)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_5 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++;
     } else if (!__pyx_t_3 && PyTuple_CheckExact(__pyx_t_4)) {
       if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_5 = PySequence_ITEM(__pyx_t_4, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_2); __Pyx_INCREF(__pyx_t_5); __pyx_t_2++;
     } else {
       __pyx_t_5 = __pyx_t_3(__pyx_t_4);
       if (unlikely(!__pyx_t_5)) {
@@ -13896,7 +13759,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_t_1 = __pyx_t_5;
     __pyx_t_5 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":90
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":90
  *         self.id2eword[null_word] = "NULL"
  *         for id, word in enumerate(self.id2eword):
  *             self.eword2id[word] = id             # <<<<<<<<<<<<<<
@@ -13908,7 +13771,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":92
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":92
  *             self.eword2id[word] = id
  * 
  *         num_pairs = 0             # <<<<<<<<<<<<<<
@@ -13917,7 +13780,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   __pyx_v_num_pairs = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":94
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":94
  *         num_pairs = 0
  * 
  *         V_E = len(eda.id2word)             # <<<<<<<<<<<<<<
@@ -13930,7 +13793,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   __pyx_v_V_E = __pyx_t_2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":95
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":95
  * 
  *         V_E = len(eda.id2word)
  *         V_F = len(fsa.darray.id2word)             # <<<<<<<<<<<<<<
@@ -13943,7 +13806,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   __pyx_v_V_F = __pyx_t_2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":96
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":96
  *         V_E = len(eda.id2word)
  *         V_F = len(fsa.darray.id2word)
  *         fmargin = <int*> malloc(V_F*sizeof(int))             # <<<<<<<<<<<<<<
@@ -13952,7 +13815,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   __pyx_v_fmargin = ((int *)malloc((__pyx_v_V_F * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":97
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":97
  *         V_F = len(fsa.darray.id2word)
  *         fmargin = <int*> malloc(V_F*sizeof(int))
  *         emargin = <int*> malloc(V_E*sizeof(int))             # <<<<<<<<<<<<<<
@@ -13961,7 +13824,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   __pyx_v_emargin = ((int *)malloc((__pyx_v_V_E * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":98
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":98
  *         fmargin = <int*> malloc(V_F*sizeof(int))
  *         emargin = <int*> malloc(V_E*sizeof(int))
  *         memset(fmargin, 0, V_F*sizeof(int))             # <<<<<<<<<<<<<<
@@ -13970,7 +13833,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   memset(__pyx_v_fmargin, 0, (__pyx_v_V_F * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":99
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":99
  *         emargin = <int*> malloc(V_E*sizeof(int))
  *         memset(fmargin, 0, V_F*sizeof(int))
  *         memset(emargin, 0, V_E*sizeof(int))             # <<<<<<<<<<<<<<
@@ -13979,7 +13842,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   memset(__pyx_v_emargin, 0, (__pyx_v_V_E * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":101
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":101
  *         memset(emargin, 0, V_E*sizeof(int))
  * 
  *         dict = <_node**> malloc(V_F*sizeof(_node*))             # <<<<<<<<<<<<<<
@@ -13988,7 +13851,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   __pyx_v_dict = ((struct __pyx_t_3_sa__node **)malloc((__pyx_v_V_F * (sizeof(struct __pyx_t_3_sa__node *)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":102
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":102
  * 
  *         dict = <_node**> malloc(V_F*sizeof(_node*))
  *         memset(dict, 0, V_F*sizeof(_node*))             # <<<<<<<<<<<<<<
@@ -13997,7 +13860,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   memset(__pyx_v_dict, 0, (__pyx_v_V_F * (sizeof(struct __pyx_t_3_sa__node *))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":104
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":104
  *         memset(dict, 0, V_F*sizeof(_node*))
  * 
  *         num_sents = len(fsa.darray.sent_index)             # <<<<<<<<<<<<<<
@@ -14013,7 +13876,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __pyx_v_num_sents = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":105
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":105
  * 
  *         num_sents = len(fsa.darray.sent_index)
  *         for sent_id from 0 <= sent_id < num_sents-1:             # <<<<<<<<<<<<<<
@@ -14026,7 +13889,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   for (__pyx_v_sent_id = 0; __pyx_v_sent_id < __pyx_t_6; __pyx_v_sent_id++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":107
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":107
  *         for sent_id from 0 <= sent_id < num_sents-1:
  * 
  *             fsent = fsa.darray.data.arr + fsa.darray.sent_index.arr[sent_id]             # <<<<<<<<<<<<<<
@@ -14035,7 +13898,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     __pyx_v_fsent = (__pyx_v_fsa->darray->data->arr + (__pyx_v_fsa->darray->sent_index->arr[__pyx_v_sent_id]));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":108
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":108
  * 
  *             fsent = fsa.darray.data.arr + fsa.darray.sent_index.arr[sent_id]
  *             I = fsa.darray.sent_index.arr[sent_id+1] - fsa.darray.sent_index.arr[sent_id] - 1             # <<<<<<<<<<<<<<
@@ -14044,7 +13907,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     __pyx_v_I = (((__pyx_v_fsa->darray->sent_index->arr[(__pyx_v_sent_id + 1)]) - (__pyx_v_fsa->darray->sent_index->arr[__pyx_v_sent_id])) - 1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":109
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":109
  *             fsent = fsa.darray.data.arr + fsa.darray.sent_index.arr[sent_id]
  *             I = fsa.darray.sent_index.arr[sent_id+1] - fsa.darray.sent_index.arr[sent_id] - 1
  *             faligned = <int*> malloc(I*sizeof(int))             # <<<<<<<<<<<<<<
@@ -14053,7 +13916,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     __pyx_v_faligned = ((int *)malloc((__pyx_v_I * (sizeof(int)))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":110
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":110
  *             I = fsa.darray.sent_index.arr[sent_id+1] - fsa.darray.sent_index.arr[sent_id] - 1
  *             faligned = <int*> malloc(I*sizeof(int))
  *             memset(faligned, 0, I*sizeof(int))             # <<<<<<<<<<<<<<
@@ -14062,7 +13925,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     memset(__pyx_v_faligned, 0, (__pyx_v_I * (sizeof(int))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":112
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":112
  *             memset(faligned, 0, I*sizeof(int))
  * 
  *             esent = eda.data.arr + eda.sent_index.arr[sent_id]             # <<<<<<<<<<<<<<
@@ -14071,7 +13934,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     __pyx_v_esent = (__pyx_v_eda->data->arr + (__pyx_v_eda->sent_index->arr[__pyx_v_sent_id]));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":113
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":113
  * 
  *             esent = eda.data.arr + eda.sent_index.arr[sent_id]
  *             J = eda.sent_index.arr[sent_id+1] - eda.sent_index.arr[sent_id] - 1             # <<<<<<<<<<<<<<
@@ -14080,7 +13943,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     __pyx_v_J = (((__pyx_v_eda->sent_index->arr[(__pyx_v_sent_id + 1)]) - (__pyx_v_eda->sent_index->arr[__pyx_v_sent_id])) - 1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":114
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":114
  *             esent = eda.data.arr + eda.sent_index.arr[sent_id]
  *             J = eda.sent_index.arr[sent_id+1] - eda.sent_index.arr[sent_id] - 1
  *             ealigned = <int*> malloc(J*sizeof(int))             # <<<<<<<<<<<<<<
@@ -14089,7 +13952,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     __pyx_v_ealigned = ((int *)malloc((__pyx_v_J * (sizeof(int)))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":115
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":115
  *             J = eda.sent_index.arr[sent_id+1] - eda.sent_index.arr[sent_id] - 1
  *             ealigned = <int*> malloc(J*sizeof(int))
  *             memset(ealigned, 0, J*sizeof(int))             # <<<<<<<<<<<<<<
@@ -14098,7 +13961,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     memset(__pyx_v_ealigned, 0, (__pyx_v_J * (sizeof(int))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":117
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":117
  *             memset(ealigned, 0, J*sizeof(int))
  * 
  *             links = aa._get_sent_links(sent_id, &num_links)             # <<<<<<<<<<<<<<
@@ -14107,7 +13970,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     __pyx_v_links = ((struct __pyx_vtabstruct_3_sa_Alignment *)__pyx_v_aa->__pyx_vtab)->_get_sent_links(__pyx_v_aa, __pyx_v_sent_id, (&__pyx_v_num_links));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":119
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":119
  *             links = aa._get_sent_links(sent_id, &num_links)
  * 
  *             for l from 0 <= l < num_links:             # <<<<<<<<<<<<<<
@@ -14117,7 +13980,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_t_7 = __pyx_v_num_links;
     for (__pyx_v_l = 0; __pyx_v_l < __pyx_t_7; __pyx_v_l++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":120
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":120
  * 
  *             for l from 0 <= l < num_links:
  *                 i = links[l*2]             # <<<<<<<<<<<<<<
@@ -14126,7 +13989,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
       __pyx_v_i = (__pyx_v_links[(__pyx_v_l * 2)]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":121
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":121
  *             for l from 0 <= l < num_links:
  *                 i = links[l*2]
  *                 j = links[l*2+1]             # <<<<<<<<<<<<<<
@@ -14135,7 +13998,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
       __pyx_v_j = (__pyx_v_links[((__pyx_v_l * 2) + 1)]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":122
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":122
  *                 i = links[l*2]
  *                 j = links[l*2+1]
  *                 if i >= I or j >= J:             # <<<<<<<<<<<<<<
@@ -14151,7 +14014,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       }
       if (__pyx_t_10) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":123
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":123
  *                 j = links[l*2+1]
  *                 if i >= I or j >= J:
  *                     raise Exception("%d-%d out of bounds (I=%d,J=%d) in line %d\n" % (i,j,I,J,sent_id+1))             # <<<<<<<<<<<<<<
@@ -14203,7 +14066,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       }
       __pyx_L15:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":124
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":124
  *                 if i >= I or j >= J:
  *                     raise Exception("%d-%d out of bounds (I=%d,J=%d) in line %d\n" % (i,j,I,J,sent_id+1))
  *                 f_i = fsent[i]             # <<<<<<<<<<<<<<
@@ -14212,7 +14075,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
       __pyx_v_f_i = (__pyx_v_fsent[__pyx_v_i]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":125
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":125
  *                     raise Exception("%d-%d out of bounds (I=%d,J=%d) in line %d\n" % (i,j,I,J,sent_id+1))
  *                 f_i = fsent[i]
  *                 e_j = esent[j]             # <<<<<<<<<<<<<<
@@ -14221,7 +14084,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
       __pyx_v_e_j = (__pyx_v_esent[__pyx_v_j]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":126
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":126
  *                 f_i = fsent[i]
  *                 e_j = esent[j]
  *                 fmargin[f_i] = fmargin[f_i]+1             # <<<<<<<<<<<<<<
@@ -14230,7 +14093,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
       (__pyx_v_fmargin[__pyx_v_f_i]) = ((__pyx_v_fmargin[__pyx_v_f_i]) + 1);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":127
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":127
  *                 e_j = esent[j]
  *                 fmargin[f_i] = fmargin[f_i]+1
  *                 emargin[e_j] = emargin[e_j]+1             # <<<<<<<<<<<<<<
@@ -14239,7 +14102,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
       (__pyx_v_emargin[__pyx_v_e_j]) = ((__pyx_v_emargin[__pyx_v_e_j]) + 1);
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":128
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":128
  *                 fmargin[f_i] = fmargin[f_i]+1
  *                 emargin[e_j] = emargin[e_j]+1
  *                 if dict[f_i] == NULL:             # <<<<<<<<<<<<<<
@@ -14249,7 +14112,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       __pyx_t_10 = ((__pyx_v_dict[__pyx_v_f_i]) == NULL);
       if (__pyx_t_10) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":129
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":129
  *                 emargin[e_j] = emargin[e_j]+1
  *                 if dict[f_i] == NULL:
  *                     dict[f_i] = new_node(e_j)             # <<<<<<<<<<<<<<
@@ -14258,7 +14121,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         (__pyx_v_dict[__pyx_v_f_i]) = __pyx_f_3_sa_new_node(__pyx_v_e_j);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":130
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":130
  *                 if dict[f_i] == NULL:
  *                     dict[f_i] = new_node(e_j)
  *                     dict[f_i].val = 1             # <<<<<<<<<<<<<<
@@ -14267,7 +14130,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         (__pyx_v_dict[__pyx_v_f_i])->val = 1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":131
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":131
  *                     dict[f_i] = new_node(e_j)
  *                     dict[f_i].val = 1
  *                     num_pairs = num_pairs + 1             # <<<<<<<<<<<<<<
@@ -14279,7 +14142,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":133
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":133
  *                     num_pairs = num_pairs + 1
  *                 else:
  *                     count = get_val(dict[f_i], e_j)             # <<<<<<<<<<<<<<
@@ -14288,7 +14151,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         __pyx_v_count = __pyx_f_3_sa_get_val((__pyx_v_dict[__pyx_v_f_i]), __pyx_v_e_j);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":134
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":134
  *                 else:
  *                     count = get_val(dict[f_i], e_j)
  *                     if count[0] == 0:             # <<<<<<<<<<<<<<
@@ -14298,7 +14161,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
         __pyx_t_10 = ((__pyx_v_count[0]) == 0);
         if (__pyx_t_10) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":135
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":135
  *                     count = get_val(dict[f_i], e_j)
  *                     if count[0] == 0:
  *                         num_pairs = num_pairs + 1             # <<<<<<<<<<<<<<
@@ -14310,7 +14173,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
         }
         __pyx_L17:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":136
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":136
  *                     if count[0] == 0:
  *                         num_pairs = num_pairs + 1
  *                     count[0] = count[0] + 1             # <<<<<<<<<<<<<<
@@ -14321,7 +14184,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       }
       __pyx_L16:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":138
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":138
  *                     count[0] = count[0] + 1
  *                 # add count
  *                 faligned[i] = 1             # <<<<<<<<<<<<<<
@@ -14330,7 +14193,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
       (__pyx_v_faligned[__pyx_v_i]) = 1;
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":139
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":139
  *                 # add count
  *                 faligned[i] = 1
  *                 ealigned[j] = 1             # <<<<<<<<<<<<<<
@@ -14340,7 +14203,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       (__pyx_v_ealigned[__pyx_v_j]) = 1;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":140
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":140
  *                 faligned[i] = 1
  *                 ealigned[j] = 1
  *             for i from 0 <= i < I:             # <<<<<<<<<<<<<<
@@ -14350,7 +14213,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_t_7 = __pyx_v_I;
     for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_7; __pyx_v_i++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":141
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":141
  *                 ealigned[j] = 1
  *             for i from 0 <= i < I:
  *                 if faligned[i] == 0:             # <<<<<<<<<<<<<<
@@ -14360,7 +14223,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       __pyx_t_10 = ((__pyx_v_faligned[__pyx_v_i]) == 0);
       if (__pyx_t_10) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":142
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":142
  *             for i from 0 <= i < I:
  *                 if faligned[i] == 0:
  *                     f_i = fsent[i]             # <<<<<<<<<<<<<<
@@ -14369,7 +14232,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         __pyx_v_f_i = (__pyx_v_fsent[__pyx_v_i]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":143
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":143
  *                 if faligned[i] == 0:
  *                     f_i = fsent[i]
  *                     fmargin[f_i] = fmargin[f_i] + 1             # <<<<<<<<<<<<<<
@@ -14378,7 +14241,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         (__pyx_v_fmargin[__pyx_v_f_i]) = ((__pyx_v_fmargin[__pyx_v_f_i]) + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":144
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":144
  *                     f_i = fsent[i]
  *                     fmargin[f_i] = fmargin[f_i] + 1
  *                     emargin[null_word] = emargin[null_word] + 1             # <<<<<<<<<<<<<<
@@ -14387,7 +14250,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         (__pyx_v_emargin[__pyx_v_null_word]) = ((__pyx_v_emargin[__pyx_v_null_word]) + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":145
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":145
  *                     fmargin[f_i] = fmargin[f_i] + 1
  *                     emargin[null_word] = emargin[null_word] + 1
  *                     if dict[f_i] == NULL:             # <<<<<<<<<<<<<<
@@ -14397,7 +14260,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
         __pyx_t_10 = ((__pyx_v_dict[__pyx_v_f_i]) == NULL);
         if (__pyx_t_10) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":146
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":146
  *                     emargin[null_word] = emargin[null_word] + 1
  *                     if dict[f_i] == NULL:
  *                         dict[f_i] = new_node(null_word)             # <<<<<<<<<<<<<<
@@ -14406,7 +14269,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
           (__pyx_v_dict[__pyx_v_f_i]) = __pyx_f_3_sa_new_node(__pyx_v_null_word);
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":147
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":147
  *                     if dict[f_i] == NULL:
  *                         dict[f_i] = new_node(null_word)
  *                         dict[f_i].val = 1             # <<<<<<<<<<<<<<
@@ -14415,7 +14278,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
           (__pyx_v_dict[__pyx_v_f_i])->val = 1;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":148
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":148
  *                         dict[f_i] = new_node(null_word)
  *                         dict[f_i].val = 1
  *                         num_pairs = num_pairs + 1             # <<<<<<<<<<<<<<
@@ -14427,7 +14290,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":150
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":150
  *                         num_pairs = num_pairs + 1
  *                     else:
  *                         count = get_val(dict[f_i], null_word)             # <<<<<<<<<<<<<<
@@ -14436,7 +14299,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
           __pyx_v_count = __pyx_f_3_sa_get_val((__pyx_v_dict[__pyx_v_f_i]), __pyx_v_null_word);
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":151
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":151
  *                     else:
  *                         count = get_val(dict[f_i], null_word)
  *                         if count[0] == 0:             # <<<<<<<<<<<<<<
@@ -14446,7 +14309,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
           __pyx_t_10 = ((__pyx_v_count[0]) == 0);
           if (__pyx_t_10) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":152
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":152
  *                         count = get_val(dict[f_i], null_word)
  *                         if count[0] == 0:
  *                             num_pairs = num_pairs + 1             # <<<<<<<<<<<<<<
@@ -14458,7 +14321,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
           }
           __pyx_L22:;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":153
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":153
  *                         if count[0] == 0:
  *                             num_pairs = num_pairs + 1
  *                         count[0] = count[0] + 1             # <<<<<<<<<<<<<<
@@ -14473,7 +14336,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       __pyx_L20:;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":154
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":154
  *                             num_pairs = num_pairs + 1
  *                         count[0] = count[0] + 1
  *             for j from 0 <= j < J:             # <<<<<<<<<<<<<<
@@ -14483,7 +14346,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_t_7 = __pyx_v_J;
     for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_7; __pyx_v_j++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":155
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":155
  *                         count[0] = count[0] + 1
  *             for j from 0 <= j < J:
  *                 if ealigned[j] == 0:             # <<<<<<<<<<<<<<
@@ -14493,7 +14356,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       __pyx_t_10 = ((__pyx_v_ealigned[__pyx_v_j]) == 0);
       if (__pyx_t_10) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":156
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":156
  *             for j from 0 <= j < J:
  *                 if ealigned[j] == 0:
  *                     e_j = esent[j]             # <<<<<<<<<<<<<<
@@ -14502,7 +14365,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         __pyx_v_e_j = (__pyx_v_esent[__pyx_v_j]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":157
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":157
  *                 if ealigned[j] == 0:
  *                     e_j = esent[j]
  *                     fmargin[null_word] = fmargin[null_word] + 1             # <<<<<<<<<<<<<<
@@ -14511,7 +14374,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         (__pyx_v_fmargin[__pyx_v_null_word]) = ((__pyx_v_fmargin[__pyx_v_null_word]) + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":158
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":158
  *                     e_j = esent[j]
  *                     fmargin[null_word] = fmargin[null_word] + 1
  *                     emargin[e_j] = emargin[e_j] + 1             # <<<<<<<<<<<<<<
@@ -14520,7 +14383,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
         (__pyx_v_emargin[__pyx_v_e_j]) = ((__pyx_v_emargin[__pyx_v_e_j]) + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":159
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":159
  *                     fmargin[null_word] = fmargin[null_word] + 1
  *                     emargin[e_j] = emargin[e_j] + 1
  *                     if dict[null_word] == NULL:             # <<<<<<<<<<<<<<
@@ -14530,7 +14393,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
         __pyx_t_10 = ((__pyx_v_dict[__pyx_v_null_word]) == NULL);
         if (__pyx_t_10) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":160
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":160
  *                     emargin[e_j] = emargin[e_j] + 1
  *                     if dict[null_word] == NULL:
  *                         dict[null_word] = new_node(e_j)             # <<<<<<<<<<<<<<
@@ -14539,7 +14402,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
           (__pyx_v_dict[__pyx_v_null_word]) = __pyx_f_3_sa_new_node(__pyx_v_e_j);
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":161
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":161
  *                     if dict[null_word] == NULL:
  *                         dict[null_word] = new_node(e_j)
  *                         dict[null_word].val = 1             # <<<<<<<<<<<<<<
@@ -14548,7 +14411,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
           (__pyx_v_dict[__pyx_v_null_word])->val = 1;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":162
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":162
  *                         dict[null_word] = new_node(e_j)
  *                         dict[null_word].val = 1
  *                         num_pairs = num_pairs + 1             # <<<<<<<<<<<<<<
@@ -14560,7 +14423,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":164
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":164
  *                         num_pairs = num_pairs + 1
  *                     else:
  *                         count = get_val(dict[null_word], e_j)             # <<<<<<<<<<<<<<
@@ -14569,7 +14432,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
           __pyx_v_count = __pyx_f_3_sa_get_val((__pyx_v_dict[__pyx_v_null_word]), __pyx_v_e_j);
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":165
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":165
  *                     else:
  *                         count = get_val(dict[null_word], e_j)
  *                         if count[0] == 0:             # <<<<<<<<<<<<<<
@@ -14579,7 +14442,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
           __pyx_t_10 = ((__pyx_v_count[0]) == 0);
           if (__pyx_t_10) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":166
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":166
  *                         count = get_val(dict[null_word], e_j)
  *                         if count[0] == 0:
  *                             num_pairs = num_pairs + 1             # <<<<<<<<<<<<<<
@@ -14591,7 +14454,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
           }
           __pyx_L27:;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":167
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":167
  *                         if count[0] == 0:
  *                             num_pairs = num_pairs + 1
  *                         count[0] = count[0] + 1             # <<<<<<<<<<<<<<
@@ -14606,7 +14469,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       __pyx_L25:;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":168
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":168
  *                             num_pairs = num_pairs + 1
  *                         count[0] = count[0] + 1
  *             free(links)             # <<<<<<<<<<<<<<
@@ -14615,7 +14478,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     free(__pyx_v_links);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":169
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":169
  *                         count[0] = count[0] + 1
  *             free(links)
  *             free(faligned)             # <<<<<<<<<<<<<<
@@ -14624,7 +14487,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     free(__pyx_v_faligned);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":170
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":170
  *             free(links)
  *             free(faligned)
  *             free(ealigned)             # <<<<<<<<<<<<<<
@@ -14634,7 +14497,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     free(__pyx_v_ealigned);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":171
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":171
  *             free(faligned)
  *             free(ealigned)
  *         self.f_index = IntList(initial_len=V_F)             # <<<<<<<<<<<<<<
@@ -14656,7 +14519,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __pyx_v_self->f_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_13);
   __pyx_t_13 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":172
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":172
  *             free(ealigned)
  *         self.f_index = IntList(initial_len=V_F)
  *         self.e_index = IntList(initial_len=num_pairs)             # <<<<<<<<<<<<<<
@@ -14678,7 +14541,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __pyx_v_self->e_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_12);
   __pyx_t_12 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":173
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":173
  *         self.f_index = IntList(initial_len=V_F)
  *         self.e_index = IntList(initial_len=num_pairs)
  *         self.col1 = FloatList(initial_len=num_pairs)             # <<<<<<<<<<<<<<
@@ -14700,7 +14563,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __pyx_v_self->col1 = ((struct __pyx_obj_3_sa_FloatList *)__pyx_t_13);
   __pyx_t_13 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":174
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":174
  *         self.e_index = IntList(initial_len=num_pairs)
  *         self.col1 = FloatList(initial_len=num_pairs)
  *         self.col2 = FloatList(initial_len=num_pairs)             # <<<<<<<<<<<<<<
@@ -14722,7 +14585,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __pyx_v_self->col2 = ((struct __pyx_obj_3_sa_FloatList *)__pyx_t_12);
   __pyx_t_12 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":176
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":176
  *         self.col2 = FloatList(initial_len=num_pairs)
  * 
  *         num_pairs = 0             # <<<<<<<<<<<<<<
@@ -14731,7 +14594,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   __pyx_v_num_pairs = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":177
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":177
  * 
  *         num_pairs = 0
  *         for i from 0 <= i < V_F:             # <<<<<<<<<<<<<<
@@ -14741,7 +14604,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   __pyx_t_6 = __pyx_v_V_F;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_6; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":179
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":179
  *         for i from 0 <= i < V_F:
  *             #self.f_index[i] = num_pairs
  *             self.f_index.set(i, num_pairs)             # <<<<<<<<<<<<<<
@@ -14750,7 +14613,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
     ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->f_index->__pyx_vtab)->set(__pyx_v_self->f_index, __pyx_v_i, __pyx_v_num_pairs);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":180
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":180
  *             #self.f_index[i] = num_pairs
  *             self.f_index.set(i, num_pairs)
  *             if dict[i] != NULL:             # <<<<<<<<<<<<<<
@@ -14760,7 +14623,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_t_10 = ((__pyx_v_dict[__pyx_v_i]) != NULL);
     if (__pyx_t_10) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":181
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":181
  *             self.f_index.set(i, num_pairs)
  *             if dict[i] != NULL:
  *                 self._add_node(dict[i], &num_pairs, float(fmargin[i]), emargin)             # <<<<<<<<<<<<<<
@@ -14771,7 +14634,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
       __Pyx_GOTREF(__pyx_t_12);
       __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":182
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":182
  *             if dict[i] != NULL:
  *                 self._add_node(dict[i], &num_pairs, float(fmargin[i]), emargin)
  *                 del_node(dict[i])             # <<<<<<<<<<<<<<
@@ -14786,7 +14649,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
     __pyx_L30:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":183
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":183
  *                 self._add_node(dict[i], &num_pairs, float(fmargin[i]), emargin)
  *                 del_node(dict[i])
  *         free(fmargin)             # <<<<<<<<<<<<<<
@@ -14795,7 +14658,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   free(__pyx_v_fmargin);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":184
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":184
  *                 del_node(dict[i])
  *         free(fmargin)
  *         free(emargin)             # <<<<<<<<<<<<<<
@@ -14804,7 +14667,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   free(__pyx_v_emargin);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":185
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":185
  *         free(fmargin)
  *         free(emargin)
  *         free(dict)             # <<<<<<<<<<<<<<
@@ -14813,7 +14676,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
  */
   free(__pyx_v_dict);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":186
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":186
  *         free(emargin)
  *         free(dict)
  *         return             # <<<<<<<<<<<<<<
@@ -14844,7 +14707,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":189
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":189
  * 
  * 
  *     cdef _add_node(self, _node* n, int* num_pairs, float fmargin, int* emargin):             # <<<<<<<<<<<<<<
@@ -14863,7 +14726,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("_add_node", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":191
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":191
  *     cdef _add_node(self, _node* n, int* num_pairs, float fmargin, int* emargin):
  *         cdef int loc
  *         if n.smaller != NULL:             # <<<<<<<<<<<<<<
@@ -14873,7 +14736,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
   __pyx_t_1 = (__pyx_v_n->smaller != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":192
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":192
  *         cdef int loc
  *         if n.smaller != NULL:
  *             self._add_node(n.smaller, num_pairs, fmargin, emargin)             # <<<<<<<<<<<<<<
@@ -14887,7 +14750,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":193
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":193
  *         if n.smaller != NULL:
  *             self._add_node(n.smaller, num_pairs, fmargin, emargin)
  *         loc = num_pairs[0]             # <<<<<<<<<<<<<<
@@ -14896,7 +14759,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
  */
   __pyx_v_loc = (__pyx_v_num_pairs[0]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":194
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":194
  *             self._add_node(n.smaller, num_pairs, fmargin, emargin)
  *         loc = num_pairs[0]
  *         self.e_index.set(loc, n.key)             # <<<<<<<<<<<<<<
@@ -14905,7 +14768,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->e_index->__pyx_vtab)->set(__pyx_v_self->e_index, __pyx_v_loc, __pyx_v_n->key);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":195
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":195
  *         loc = num_pairs[0]
  *         self.e_index.set(loc, n.key)
  *         self.col1.set(loc, float(n.val)/fmargin)             # <<<<<<<<<<<<<<
@@ -14918,7 +14781,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
   }
   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->col1->__pyx_vtab)->set(__pyx_v_self->col1, __pyx_v_loc, (((double)__pyx_v_n->val) / __pyx_v_fmargin));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":196
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":196
  *         self.e_index.set(loc, n.key)
  *         self.col1.set(loc, float(n.val)/fmargin)
  *         self.col2.set(loc, float(n.val)/float(emargin[n.key]))             # <<<<<<<<<<<<<<
@@ -14931,7 +14794,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
   }
   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->col2->__pyx_vtab)->set(__pyx_v_self->col2, __pyx_v_loc, (((double)__pyx_v_n->val) / ((double)(__pyx_v_emargin[__pyx_v_n->key]))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":197
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":197
  *         self.col1.set(loc, float(n.val)/fmargin)
  *         self.col2.set(loc, float(n.val)/float(emargin[n.key]))
  *         num_pairs[0] = loc + 1             # <<<<<<<<<<<<<<
@@ -14940,7 +14803,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
  */
   (__pyx_v_num_pairs[0]) = (__pyx_v_loc + 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":198
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":198
  *         self.col2.set(loc, float(n.val)/float(emargin[n.key]))
  *         num_pairs[0] = loc + 1
  *         if n.bigger != NULL:             # <<<<<<<<<<<<<<
@@ -14950,7 +14813,7 @@ static PyObject *__pyx_f_3_sa_5BiLex__add_node(struct __pyx_obj_3_sa_BiLex *__py
   __pyx_t_1 = (__pyx_v_n->bigger != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":199
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":199
  *         num_pairs[0] = loc + 1
  *         if n.bigger != NULL:
  *             self._add_node(n.bigger, num_pairs, fmargin, emargin)             # <<<<<<<<<<<<<<
@@ -14997,7 +14860,7 @@ static PyObject *__pyx_pw_3_sa_5BiLex_3write_binary(PyObject *__pyx_v_self, PyOb
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":202
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":202
  * 
  * 
  *     def write_binary(self, char* filename):             # <<<<<<<<<<<<<<
@@ -15016,7 +14879,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("write_binary", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":204
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":204
  *     def write_binary(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "w")             # <<<<<<<<<<<<<<
@@ -15025,7 +14888,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__w);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":205
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":205
  *         cdef FILE* f
  *         f = fopen(filename, "w")
  *         self.f_index.write_handle(f)             # <<<<<<<<<<<<<<
@@ -15034,7 +14897,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->f_index->__pyx_vtab)->write_handle(__pyx_v_self->f_index, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":206
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":206
  *         f = fopen(filename, "w")
  *         self.f_index.write_handle(f)
  *         self.e_index.write_handle(f)             # <<<<<<<<<<<<<<
@@ -15043,7 +14906,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->e_index->__pyx_vtab)->write_handle(__pyx_v_self->e_index, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":207
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":207
  *         self.f_index.write_handle(f)
  *         self.e_index.write_handle(f)
  *         self.col1.write_handle(f)             # <<<<<<<<<<<<<<
@@ -15052,7 +14915,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
  */
   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->col1->__pyx_vtab)->write_handle(__pyx_v_self->col1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":208
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":208
  *         self.e_index.write_handle(f)
  *         self.col1.write_handle(f)
  *         self.col2.write_handle(f)             # <<<<<<<<<<<<<<
@@ -15061,7 +14924,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
  */
   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->col2->__pyx_vtab)->write_handle(__pyx_v_self->col2, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":209
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":209
  *         self.col1.write_handle(f)
  *         self.col2.write_handle(f)
  *         self.write_wordlist(self.id2fword, f)             # <<<<<<<<<<<<<<
@@ -15075,7 +14938,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":210
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":210
  *         self.col2.write_handle(f)
  *         self.write_wordlist(self.id2fword, f)
  *         self.write_wordlist(self.id2eword, f)             # <<<<<<<<<<<<<<
@@ -15089,7 +14952,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":211
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":211
  *         self.write_wordlist(self.id2fword, f)
  *         self.write_wordlist(self.id2eword, f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -15111,7 +14974,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_2write_binary(struct __pyx_obj_3_sa_BiLex
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":214
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":214
  * 
  * 
  *     cdef write_wordlist(self, wordlist, FILE* f):             # <<<<<<<<<<<<<<
@@ -15136,7 +14999,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("write_wordlist", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":218
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":218
  *         cdef int num_words
  * 
  *         num_words = len(wordlist)             # <<<<<<<<<<<<<<
@@ -15146,7 +15009,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
   __pyx_t_1 = PyObject_Length(__pyx_v_wordlist); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 218; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_num_words = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":219
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":219
  * 
  *         num_words = len(wordlist)
  *         fwrite(&(num_words), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -15155,7 +15018,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
  */
   fwrite((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":220
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":220
  *         num_words = len(wordlist)
  *         fwrite(&(num_words), sizeof(int), 1, f)
  *         for word in wordlist:             # <<<<<<<<<<<<<<
@@ -15173,18 +15036,10 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
   for (;;) {
     if (!__pyx_t_3 && PyList_CheckExact(__pyx_t_2)) {
       if (__pyx_t_1 >= PyList_GET_SIZE(__pyx_t_2)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_1); __Pyx_INCREF(__pyx_t_4); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_1); __Pyx_INCREF(__pyx_t_4); __pyx_t_1++;
     } else if (!__pyx_t_3 && PyTuple_CheckExact(__pyx_t_2)) {
       if (__pyx_t_1 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_1); __Pyx_INCREF(__pyx_t_4); __pyx_t_1++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_1); __pyx_t_1++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 220; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_1); __Pyx_INCREF(__pyx_t_4); __pyx_t_1++;
     } else {
       __pyx_t_4 = __pyx_t_3(__pyx_t_2);
       if (unlikely(!__pyx_t_4)) {
@@ -15200,7 +15055,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
     __pyx_v_word = __pyx_t_4;
     __pyx_t_4 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":221
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":221
  *         fwrite(&(num_words), sizeof(int), 1, f)
  *         for word in wordlist:
  *             word_len = len(word) + 1             # <<<<<<<<<<<<<<
@@ -15210,7 +15065,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
     __pyx_t_5 = PyObject_Length(__pyx_v_word); if (unlikely(__pyx_t_5 == -1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 221; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_word_len = (__pyx_t_5 + 1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":222
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":222
  *         for word in wordlist:
  *             word_len = len(word) + 1
  *             fwrite(&(word_len), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -15219,7 +15074,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
  */
     fwrite((&__pyx_v_word_len), (sizeof(int)), 1, __pyx_v_f);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":223
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":223
  *             word_len = len(word) + 1
  *             fwrite(&(word_len), sizeof(int), 1, f)
  *             fwrite(<char *>word, sizeof(char), word_len, f)             # <<<<<<<<<<<<<<
@@ -15245,7 +15100,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_write_wordlist(CYTHON_UNUSED struct __pyx_o
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":226
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":226
  * 
  * 
  *     cdef read_wordlist(self, word2id, id2word, FILE* f):             # <<<<<<<<<<<<<<
@@ -15269,7 +15124,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("read_wordlist", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":231
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":231
  *         cdef char* word
  * 
  *         fread(&(num_words), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -15278,7 +15133,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
  */
   fread((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":232
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":232
  * 
  *         fread(&(num_words), sizeof(int), 1, f)
  *         for i from 0 <= i < num_words:             # <<<<<<<<<<<<<<
@@ -15288,7 +15143,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
   __pyx_t_1 = __pyx_v_num_words;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":233
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":233
  *         fread(&(num_words), sizeof(int), 1, f)
  *         for i from 0 <= i < num_words:
  *             fread(&(word_len), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -15297,7 +15152,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
  */
     fread((&__pyx_v_word_len), (sizeof(int)), 1, __pyx_v_f);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":234
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":234
  *         for i from 0 <= i < num_words:
  *             fread(&(word_len), sizeof(int), 1, f)
  *             word = <char*> malloc (word_len * sizeof(char))             # <<<<<<<<<<<<<<
@@ -15306,7 +15161,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
  */
     __pyx_v_word = ((char *)malloc((__pyx_v_word_len * (sizeof(char)))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":235
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":235
  *             fread(&(word_len), sizeof(int), 1, f)
  *             word = <char*> malloc (word_len * sizeof(char))
  *             fread(word, sizeof(char), word_len, f)             # <<<<<<<<<<<<<<
@@ -15315,7 +15170,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
  */
     fread(__pyx_v_word, (sizeof(char)), __pyx_v_word_len, __pyx_v_f);
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":236
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":236
  *             word = <char*> malloc (word_len * sizeof(char))
  *             fread(word, sizeof(char), word_len, f)
  *             word2id[word] = len(id2word)             # <<<<<<<<<<<<<<
@@ -15331,7 +15186,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
     __Pyx_DECREF(((PyObject *)__pyx_t_4)); __pyx_t_4 = 0;
     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":237
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":237
  *             fread(word, sizeof(char), word_len, f)
  *             word2id[word] = len(id2word)
  *             id2word.append(word)             # <<<<<<<<<<<<<<
@@ -15345,7 +15200,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_read_wordlist(CYTHON_UNUSED struct __pyx_ob
     __Pyx_DECREF(((PyObject *)__pyx_t_3)); __pyx_t_3 = 0;
     __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":238
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":238
  *             word2id[word] = len(id2word)
  *             id2word.append(word)
  *             free(word)             # <<<<<<<<<<<<<<
@@ -15389,7 +15244,7 @@ static PyObject *__pyx_pw_3_sa_5BiLex_5read_binary(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":240
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":240
  *             free(word)
  * 
  *     def read_binary(self, char* filename):             # <<<<<<<<<<<<<<
@@ -15409,7 +15264,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("read_binary", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":242
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":242
  *     def read_binary(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "r")             # <<<<<<<<<<<<<<
@@ -15418,7 +15273,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__r);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":243
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":243
  *         cdef FILE* f
  *         f = fopen(filename, "r")
  *         self.f_index.read_handle(f)             # <<<<<<<<<<<<<<
@@ -15427,7 +15282,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->f_index->__pyx_vtab)->read_handle(__pyx_v_self->f_index, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":244
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":244
  *         f = fopen(filename, "r")
  *         self.f_index.read_handle(f)
  *         self.e_index.read_handle(f)             # <<<<<<<<<<<<<<
@@ -15436,7 +15291,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
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   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->e_index->__pyx_vtab)->read_handle(__pyx_v_self->e_index, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":245
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":245
  *         self.f_index.read_handle(f)
  *         self.e_index.read_handle(f)
  *         self.col1.read_handle(f)             # <<<<<<<<<<<<<<
@@ -15445,7 +15300,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
  */
   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->col1->__pyx_vtab)->read_handle(__pyx_v_self->col1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":246
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":246
  *         self.e_index.read_handle(f)
  *         self.col1.read_handle(f)
  *         self.col2.read_handle(f)             # <<<<<<<<<<<<<<
@@ -15454,7 +15309,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
  */
   ((struct __pyx_vtabstruct_3_sa_FloatList *)__pyx_v_self->col2->__pyx_vtab)->read_handle(__pyx_v_self->col2, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":247
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":247
  *         self.col1.read_handle(f)
  *         self.col2.read_handle(f)
  *         self.read_wordlist(self.fword2id, self.id2fword, f)             # <<<<<<<<<<<<<<
@@ -15471,7 +15326,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":248
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":248
  *         self.col2.read_handle(f)
  *         self.read_wordlist(self.fword2id, self.id2fword, f)
  *         self.read_wordlist(self.eword2id, self.id2eword, f)             # <<<<<<<<<<<<<<
@@ -15488,7 +15343,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_4read_binary(struct __pyx_obj_3_sa_BiLex *
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":249
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":249
  *         self.read_wordlist(self.fword2id, self.id2fword, f)
  *         self.read_wordlist(self.eword2id, self.id2eword, f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -15522,7 +15377,7 @@ static PyObject *__pyx_pw_3_sa_5BiLex_7get_e_id(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":252
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":252
  * 
  * 
  *     def get_e_id(self, eword):             # <<<<<<<<<<<<<<
@@ -15542,17 +15397,17 @@ static PyObject *__pyx_pf_3_sa_5BiLex_6get_e_id(struct __pyx_obj_3_sa_BiLex *__p
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   __Pyx_RefNannySetupContext("get_e_id", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":253
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":253
  * 
  *     def get_e_id(self, eword):
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-  __pyx_t_1 = (__Pyx_PySequence_Contains(__pyx_v_eword, __pyx_v_self->eword2id, Py_NE)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = (__Pyx_NegateNonNeg(PySequence_Contains(__pyx_v_self->eword2id, __pyx_v_eword))); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 253; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":254
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":254
  *     def get_e_id(self, eword):
  *         if eword not in self.eword2id:
  *             e_id = len(self.id2eword)             # <<<<<<<<<<<<<<
@@ -15568,7 +15423,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_6get_e_id(struct __pyx_obj_3_sa_BiLex *__p
     __pyx_v_e_id = __pyx_t_2;
     __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":255
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":255
  *         if eword not in self.eword2id:
  *             e_id = len(self.id2eword)
  *             self.id2eword.append(eword)             # <<<<<<<<<<<<<<
@@ -15579,7 +15434,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_6get_e_id(struct __pyx_obj_3_sa_BiLex *__p
     __Pyx_GOTREF(__pyx_t_2);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":256
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":256
  *             e_id = len(self.id2eword)
  *             self.id2eword.append(eword)
  *             self.eword2id[eword] = e_id             # <<<<<<<<<<<<<<
@@ -15591,7 +15446,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_6get_e_id(struct __pyx_obj_3_sa_BiLex *__p
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":257
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":257
  *             self.id2eword.append(eword)
  *             self.eword2id[eword] = e_id
  *         return self.eword2id[eword]             # <<<<<<<<<<<<<<
@@ -15629,7 +15484,7 @@ static PyObject *__pyx_pw_3_sa_5BiLex_9get_f_id(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":260
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":260
  * 
  * 
  *     def get_f_id(self, fword):             # <<<<<<<<<<<<<<
@@ -15649,17 +15504,17 @@ static PyObject *__pyx_pf_3_sa_5BiLex_8get_f_id(struct __pyx_obj_3_sa_BiLex *__p
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   __Pyx_RefNannySetupContext("get_f_id", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":261
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":261
  * 
  *     def get_f_id(self, fword):
  *         if fword not in self.fword2id:             # <<<<<<<<<<<<<<
  *             f_id = len(self.id2fword)
  *             self.id2fword.append(fword)
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-  __pyx_t_1 = (__Pyx_PySequence_Contains(__pyx_v_fword, __pyx_v_self->fword2id, Py_NE)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 261; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = (__Pyx_NegateNonNeg(PySequence_Contains(__pyx_v_self->fword2id, __pyx_v_fword))); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 261; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":262
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":262
  *     def get_f_id(self, fword):
  *         if fword not in self.fword2id:
  *             f_id = len(self.id2fword)             # <<<<<<<<<<<<<<
@@ -15675,7 +15530,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_8get_f_id(struct __pyx_obj_3_sa_BiLex *__p
     __pyx_v_f_id = __pyx_t_2;
     __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":263
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":263
  *         if fword not in self.fword2id:
  *             f_id = len(self.id2fword)
  *             self.id2fword.append(fword)             # <<<<<<<<<<<<<<
@@ -15686,7 +15541,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_8get_f_id(struct __pyx_obj_3_sa_BiLex *__p
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     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":264
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":264
  *             f_id = len(self.id2fword)
  *             self.id2fword.append(fword)
  *             self.fword2id[fword] = f_id             # <<<<<<<<<<<<<<
@@ -15698,7 +15553,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_8get_f_id(struct __pyx_obj_3_sa_BiLex *__p
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":265
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":265
  *             self.id2fword.append(fword)
  *             self.fword2id[fword] = f_id
  *         return self.fword2id[fword]             # <<<<<<<<<<<<<<
@@ -15746,7 +15601,7 @@ static PyObject *__pyx_pw_3_sa_5BiLex_11read_text(PyObject *__pyx_v_self, PyObje
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":268
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":268
  * 
  * 
  *     def read_text(self, char* filename):             # <<<<<<<<<<<<<<
@@ -15801,7 +15656,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("read_text", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":272
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":272
  *         cdef IntList fcount
  * 
  *         fcount = IntList()             # <<<<<<<<<<<<<<
@@ -15813,7 +15668,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
   __pyx_v_fcount = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":273
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":273
  * 
  *         fcount = IntList()
  *         with gzip_or_text(filename) as f:             # <<<<<<<<<<<<<<
@@ -15853,7 +15708,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_v_f = __pyx_t_1;
           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":275
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":275
  *         with gzip_or_text(filename) as f:
  *             # first loop merely establishes size of array objects
  *             for line in f:             # <<<<<<<<<<<<<<
@@ -15871,18 +15726,10 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           for (;;) {
             if (!__pyx_t_9 && PyList_CheckExact(__pyx_t_1)) {
               if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_1)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 275; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 275; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_1)) {
               if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 275; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 275; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_2); __pyx_t_8++;
             } else {
               __pyx_t_2 = __pyx_t_9(__pyx_t_1);
               if (unlikely(!__pyx_t_2)) {
@@ -15898,7 +15745,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_line = __pyx_t_2;
             __pyx_t_2 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":276
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":276
  *             # first loop merely establishes size of array objects
  *             for line in f:
  *                 (fword, eword, score1, score2) = line.split()             # <<<<<<<<<<<<<<
@@ -15912,23 +15759,22 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
             if ((likely(PyTuple_CheckExact(__pyx_t_3))) || (PyList_CheckExact(__pyx_t_3))) {
               PyObject* sequence = __pyx_t_3;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              Py_ssize_t size = Py_SIZE(sequence);
-              #else
-              Py_ssize_t size = PySequence_Size(sequence);
-              #endif
-              if (unlikely(size != 4)) {
-                if (size > 4) __Pyx_RaiseTooManyValuesError(4);
-                else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
-                {__pyx_filename = __pyx_f[5]; __pyx_lineno = 276; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              }
-              #if CYTHON_COMPILING_IN_CPYTHON
               if (likely(PyTuple_CheckExact(sequence))) {
+                if (unlikely(PyTuple_GET_SIZE(sequence) != 4)) {
+                  if (PyTuple_GET_SIZE(sequence) > 4) __Pyx_RaiseTooManyValuesError(4);
+                  else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[5]; __pyx_lineno = 276; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+                }
                 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 0); 
                 __pyx_t_10 = PyTuple_GET_ITEM(sequence, 1); 
                 __pyx_t_11 = PyTuple_GET_ITEM(sequence, 2); 
                 __pyx_t_12 = PyTuple_GET_ITEM(sequence, 3); 
               } else {
+                if (unlikely(PyList_GET_SIZE(sequence) != 4)) {
+                  if (PyList_GET_SIZE(sequence) > 4) __Pyx_RaiseTooManyValuesError(4);
+                  else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[5]; __pyx_lineno = 276; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+                }
                 __pyx_t_2 = PyList_GET_ITEM(sequence, 0); 
                 __pyx_t_10 = PyList_GET_ITEM(sequence, 1); 
                 __pyx_t_11 = PyList_GET_ITEM(sequence, 2); 
@@ -15938,36 +15784,28 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
               __Pyx_INCREF(__pyx_t_10);
               __Pyx_INCREF(__pyx_t_11);
               __Pyx_INCREF(__pyx_t_12);
-              #else
-              Py_ssize_t i;
-              PyObject** temps[4] = {&__pyx_t_2,&__pyx_t_10,&__pyx_t_11,&__pyx_t_12};
-              for (i=0; i < 4; i++) {
-                PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 276; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-                *(temps[i]) = item;
-              }
-              #endif
               __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
-            } else
-            {
+            } else {
               Py_ssize_t index = -1;
-              PyObject** temps[4] = {&__pyx_t_2,&__pyx_t_10,&__pyx_t_11,&__pyx_t_12};
               __pyx_t_13 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_13)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 276; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
               __Pyx_GOTREF(__pyx_t_13);
               __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
               __pyx_t_14 = Py_TYPE(__pyx_t_13)->tp_iternext;
-              for (index=0; index < 4; index++) {
-                PyObject* item = __pyx_t_14(__pyx_t_13); if (unlikely(!item)) goto __pyx_L18_unpacking_failed;
-                __Pyx_GOTREF(item);
-                *(temps[index]) = item;
-              }
+              index = 0; __pyx_t_2 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_2)) goto __pyx_L18_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_2);
+              index = 1; __pyx_t_10 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_10)) goto __pyx_L18_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_10);
+              index = 2; __pyx_t_11 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_11)) goto __pyx_L18_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_11);
+              index = 3; __pyx_t_12 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_12)) goto __pyx_L18_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_12);
               if (__Pyx_IternextUnpackEndCheck(__pyx_t_14(__pyx_t_13), 4) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 276; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              __pyx_t_14 = NULL;
               __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
               goto __pyx_L19_unpacking_done;
               __pyx_L18_unpacking_failed:;
               __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
-              __pyx_t_14 = NULL;
-              if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
+              if (PyErr_Occurred() && PyErr_ExceptionMatches(PyExc_StopIteration)) PyErr_Clear();
+              if (!PyErr_Occurred()) __Pyx_RaiseNeedMoreValuesError(index);
               {__pyx_filename = __pyx_f[5]; __pyx_lineno = 276; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
               __pyx_L19_unpacking_done:;
             }
@@ -15984,7 +15822,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_score2 = __pyx_t_12;
             __pyx_t_12 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":277
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":277
  *             for line in f:
  *                 (fword, eword, score1, score2) = line.split()
  *                 f_id = self.get_f_id(fword)             # <<<<<<<<<<<<<<
@@ -16006,7 +15844,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_f_id = __pyx_t_11;
             __pyx_t_11 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":278
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":278
  *                 (fword, eword, score1, score2) = line.split()
  *                 f_id = self.get_f_id(fword)
  *                 e_id = self.get_e_id(eword)             # <<<<<<<<<<<<<<
@@ -16028,7 +15866,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_e_id = __pyx_t_3;
             __pyx_t_3 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":279
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":279
  *                 f_id = self.get_f_id(fword)
  *                 e_id = self.get_e_id(eword)
  *                 while f_id >= len(fcount):             # <<<<<<<<<<<<<<
@@ -16039,13 +15877,14 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
               __pyx_t_15 = PyObject_Length(((PyObject *)__pyx_v_fcount)); if (unlikely(__pyx_t_15 == -1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
               __pyx_t_3 = PyInt_FromSsize_t(__pyx_t_15); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
               __Pyx_GOTREF(__pyx_t_3);
-              __pyx_t_12 = PyObject_RichCompare(__pyx_v_f_id, __pyx_t_3, Py_GE); __Pyx_XGOTREF(__pyx_t_12); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+              __pyx_t_12 = PyObject_RichCompare(__pyx_v_f_id, __pyx_t_3, Py_GE); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+              __Pyx_GOTREF(__pyx_t_12);
               __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
               __pyx_t_16 = __Pyx_PyObject_IsTrue(__pyx_t_12); if (unlikely(__pyx_t_16 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 279; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
               __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
               if (!__pyx_t_16) break;
 
-              /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":280
+              /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":280
  *                 e_id = self.get_e_id(eword)
  *                 while f_id >= len(fcount):
  *                     fcount.append(0)             # <<<<<<<<<<<<<<
@@ -16057,7 +15896,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
               __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
             }
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":281
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":281
  *                 while f_id >= len(fcount):
  *                     fcount.append(0)
  *                 fcount.arr[f_id] = fcount.arr[f_id] + 1             # <<<<<<<<<<<<<<
@@ -16070,7 +15909,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           }
           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":284
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":284
  * 
  *             # Allocate space for dictionary in arrays
  *             N = 0             # <<<<<<<<<<<<<<
@@ -16080,7 +15919,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __Pyx_INCREF(__pyx_int_0);
           __pyx_v_N = __pyx_int_0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":285
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":285
  *             # Allocate space for dictionary in arrays
  *             N = 0
  *             n_f = len(fcount)             # <<<<<<<<<<<<<<
@@ -16093,7 +15932,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_v_n_f = __pyx_t_1;
           __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":286
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":286
  *             N = 0
  *             n_f = len(fcount)
  *             self.f_index = IntList(initial_len=n_f+1)             # <<<<<<<<<<<<<<
@@ -16115,7 +15954,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_v_self->f_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_12);
           __pyx_t_12 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":287
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":287
  *             n_f = len(fcount)
  *             self.f_index = IntList(initial_len=n_f+1)
  *             for i from 0 <= i < n_f:             # <<<<<<<<<<<<<<
@@ -16130,7 +15969,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_i = __pyx_t_12;
             __pyx_t_12 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":288
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":288
  *             self.f_index = IntList(initial_len=n_f+1)
  *             for i from 0 <= i < n_f:
  *                 self.f_index.arr[i] = N             # <<<<<<<<<<<<<<
@@ -16141,7 +15980,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_t_8 = __Pyx_PyIndex_AsSsize_t(__pyx_v_i); if (unlikely((__pyx_t_8 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 288; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
             (__pyx_v_self->f_index->arr[__pyx_t_8]) = __pyx_t_20;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":289
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":289
  *             for i from 0 <= i < n_f:
  *                 self.f_index.arr[i] = N
  *                 N = N + fcount.arr[i]             # <<<<<<<<<<<<<<
@@ -16158,7 +15997,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_N = __pyx_t_1;
             __pyx_t_1 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":290
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":290
  *                 self.f_index.arr[i] = N
  *                 N = N + fcount.arr[i]
  *                 fcount.arr[i] = 0             # <<<<<<<<<<<<<<
@@ -16170,7 +16009,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_t_19 = __Pyx_PyInt_AsLong(__pyx_v_i); if (unlikely((__pyx_t_19 == (long)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 287; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
           }
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":287
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":287
  *             n_f = len(fcount)
  *             self.f_index = IntList(initial_len=n_f+1)
  *             for i from 0 <= i < n_f:             # <<<<<<<<<<<<<<
@@ -16183,7 +16022,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_v_i = __pyx_t_1;
           __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":291
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":291
  *                 N = N + fcount.arr[i]
  *                 fcount.arr[i] = 0
  *             self.f_index.arr[n_f] = N             # <<<<<<<<<<<<<<
@@ -16194,7 +16033,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_t_8 = __Pyx_PyIndex_AsSsize_t(__pyx_v_n_f); if (unlikely((__pyx_t_8 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 291; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
           (__pyx_v_self->f_index->arr[__pyx_t_8]) = __pyx_t_20;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":292
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":292
  *                 fcount.arr[i] = 0
  *             self.f_index.arr[n_f] = N
  *             self.e_index = IntList(initial_len=N)             # <<<<<<<<<<<<<<
@@ -16213,7 +16052,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_v_self->e_index = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_12);
           __pyx_t_12 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":293
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":293
  *             self.f_index.arr[n_f] = N
  *             self.e_index = IntList(initial_len=N)
  *             self.col1 = FloatList(initial_len=N)             # <<<<<<<<<<<<<<
@@ -16232,7 +16071,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_v_self->col1 = ((struct __pyx_obj_3_sa_FloatList *)__pyx_t_1);
           __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":294
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":294
  *             self.e_index = IntList(initial_len=N)
  *             self.col1 = FloatList(initial_len=N)
  *             self.col2 = FloatList(initial_len=N)             # <<<<<<<<<<<<<<
@@ -16251,7 +16090,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __pyx_v_self->col2 = ((struct __pyx_obj_3_sa_FloatList *)__pyx_t_12);
           __pyx_t_12 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":297
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":297
  * 
  *             # Re-read file, placing words into buckets
  *             f.seek(0)             # <<<<<<<<<<<<<<
@@ -16265,7 +16104,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":298
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":298
  *             # Re-read file, placing words into buckets
  *             f.seek(0)
  *             for line in f:             # <<<<<<<<<<<<<<
@@ -16283,18 +16122,10 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
           for (;;) {
             if (!__pyx_t_9 && PyList_CheckExact(__pyx_t_1)) {
               if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_1)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_12 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_12); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 298; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_12 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 298; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_12 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_12); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_1)) {
               if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_12 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_12); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 298; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_12 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 298; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_12 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_12); __pyx_t_8++;
             } else {
               __pyx_t_12 = __pyx_t_9(__pyx_t_1);
               if (unlikely(!__pyx_t_12)) {
@@ -16310,7 +16141,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_line = __pyx_t_12;
             __pyx_t_12 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":299
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":299
  *             f.seek(0)
  *             for line in f:
  *                 (fword, eword, score1, score2) = line.split()             # <<<<<<<<<<<<<<
@@ -16324,23 +16155,22 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
             if ((likely(PyTuple_CheckExact(__pyx_t_3))) || (PyList_CheckExact(__pyx_t_3))) {
               PyObject* sequence = __pyx_t_3;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              Py_ssize_t size = Py_SIZE(sequence);
-              #else
-              Py_ssize_t size = PySequence_Size(sequence);
-              #endif
-              if (unlikely(size != 4)) {
-                if (size > 4) __Pyx_RaiseTooManyValuesError(4);
-                else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
-                {__pyx_filename = __pyx_f[5]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              }
-              #if CYTHON_COMPILING_IN_CPYTHON
               if (likely(PyTuple_CheckExact(sequence))) {
+                if (unlikely(PyTuple_GET_SIZE(sequence) != 4)) {
+                  if (PyTuple_GET_SIZE(sequence) > 4) __Pyx_RaiseTooManyValuesError(4);
+                  else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[5]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+                }
                 __pyx_t_12 = PyTuple_GET_ITEM(sequence, 0); 
                 __pyx_t_11 = PyTuple_GET_ITEM(sequence, 1); 
                 __pyx_t_10 = PyTuple_GET_ITEM(sequence, 2); 
                 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 3); 
               } else {
+                if (unlikely(PyList_GET_SIZE(sequence) != 4)) {
+                  if (PyList_GET_SIZE(sequence) > 4) __Pyx_RaiseTooManyValuesError(4);
+                  else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[5]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+                }
                 __pyx_t_12 = PyList_GET_ITEM(sequence, 0); 
                 __pyx_t_11 = PyList_GET_ITEM(sequence, 1); 
                 __pyx_t_10 = PyList_GET_ITEM(sequence, 2); 
@@ -16350,36 +16180,28 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
               __Pyx_INCREF(__pyx_t_11);
               __Pyx_INCREF(__pyx_t_10);
               __Pyx_INCREF(__pyx_t_2);
-              #else
-              Py_ssize_t i;
-              PyObject** temps[4] = {&__pyx_t_12,&__pyx_t_11,&__pyx_t_10,&__pyx_t_2};
-              for (i=0; i < 4; i++) {
-                PyObject* item = PySequence_ITEM(sequence, i); if (unlikely(!item)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-                *(temps[i]) = item;
-              }
-              #endif
               __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
-            } else
-            {
+            } else {
               Py_ssize_t index = -1;
-              PyObject** temps[4] = {&__pyx_t_12,&__pyx_t_11,&__pyx_t_10,&__pyx_t_2};
               __pyx_t_13 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_13)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
               __Pyx_GOTREF(__pyx_t_13);
               __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
               __pyx_t_14 = Py_TYPE(__pyx_t_13)->tp_iternext;
-              for (index=0; index < 4; index++) {
-                PyObject* item = __pyx_t_14(__pyx_t_13); if (unlikely(!item)) goto __pyx_L26_unpacking_failed;
-                __Pyx_GOTREF(item);
-                *(temps[index]) = item;
-              }
+              index = 0; __pyx_t_12 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_12)) goto __pyx_L26_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_12);
+              index = 1; __pyx_t_11 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_11)) goto __pyx_L26_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_11);
+              index = 2; __pyx_t_10 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_10)) goto __pyx_L26_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_10);
+              index = 3; __pyx_t_2 = __pyx_t_14(__pyx_t_13); if (unlikely(!__pyx_t_2)) goto __pyx_L26_unpacking_failed;
+              __Pyx_GOTREF(__pyx_t_2);
               if (__Pyx_IternextUnpackEndCheck(__pyx_t_14(__pyx_t_13), 4) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              __pyx_t_14 = NULL;
               __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
               goto __pyx_L27_unpacking_done;
               __pyx_L26_unpacking_failed:;
               __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
-              __pyx_t_14 = NULL;
-              if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
+              if (PyErr_Occurred() && PyErr_ExceptionMatches(PyExc_StopIteration)) PyErr_Clear();
+              if (!PyErr_Occurred()) __Pyx_RaiseNeedMoreValuesError(index);
               {__pyx_filename = __pyx_f[5]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
               __pyx_L27_unpacking_done:;
             }
@@ -16396,7 +16218,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_score2 = __pyx_t_2;
             __pyx_t_2 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":300
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":300
  *             for line in f:
  *                 (fword, eword, score1, score2) = line.split()
  *                 f_id = self.get_f_id(fword)             # <<<<<<<<<<<<<<
@@ -16418,7 +16240,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_f_id = __pyx_t_10;
             __pyx_t_10 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":301
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":301
  *                 (fword, eword, score1, score2) = line.split()
  *                 f_id = self.get_f_id(fword)
  *                 e_id = self.get_e_id(eword)             # <<<<<<<<<<<<<<
@@ -16440,7 +16262,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_e_id = __pyx_t_3;
             __pyx_t_3 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":302
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":302
  *                 f_id = self.get_f_id(fword)
  *                 e_id = self.get_e_id(eword)
  *                 index = self.f_index.arr[f_id] + fcount.arr[f_id]             # <<<<<<<<<<<<<<
@@ -16455,7 +16277,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_v_index = __pyx_t_3;
             __pyx_t_3 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":303
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":303
  *                 e_id = self.get_e_id(eword)
  *                 index = self.f_index.arr[f_id] + fcount.arr[f_id]
  *                 fcount.arr[f_id] = fcount.arr[f_id] + 1             # <<<<<<<<<<<<<<
@@ -16466,7 +16288,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_t_15 = __Pyx_PyIndex_AsSsize_t(__pyx_v_f_id); if (unlikely((__pyx_t_15 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 303; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
             (__pyx_v_fcount->arr[__pyx_t_15]) = ((__pyx_v_fcount->arr[__pyx_t_17]) + 1);
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":304
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":304
  *                 index = self.f_index.arr[f_id] + fcount.arr[f_id]
  *                 fcount.arr[f_id] = fcount.arr[f_id] + 1
  *                 self.e_index.arr[index] = int(e_id)             # <<<<<<<<<<<<<<
@@ -16486,7 +16308,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             __pyx_t_17 = __Pyx_PyIndex_AsSsize_t(__pyx_v_index); if (unlikely((__pyx_t_17 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 304; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
             (__pyx_v_self->e_index->arr[__pyx_t_17]) = __pyx_t_20;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":305
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":305
  *                 fcount.arr[f_id] = fcount.arr[f_id] + 1
  *                 self.e_index.arr[index] = int(e_id)
  *                 self.col1[index] = float(score1)             # <<<<<<<<<<<<<<
@@ -16499,7 +16321,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
             if (PyObject_SetItem(((PyObject *)__pyx_v_self->col1), __pyx_v_index, __pyx_t_2) < 0) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 305; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
             __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":306
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":306
  *                 self.e_index.arr[index] = int(e_id)
  *                 self.col1[index] = float(score1)
  *                 self.col2[index] = float(score2)             # <<<<<<<<<<<<<<
@@ -16527,7 +16349,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
         __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
         __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":273
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":273
  * 
  *         fcount = IntList()
  *         with gzip_or_text(filename) as f:             # <<<<<<<<<<<<<<
@@ -16607,7 +16429,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
     __pyx_L31:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":309
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":309
  * 
  *         # Sort buckets by eword
  *         for b from 0 <= b < n_f:             # <<<<<<<<<<<<<<
@@ -16623,7 +16445,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
     __pyx_v_b = __pyx_t_3;
     __pyx_t_3 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":310
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":310
  *         # Sort buckets by eword
  *         for b from 0 <= b < n_f:
  *             i = self.f_index.arr[b]             # <<<<<<<<<<<<<<
@@ -16637,7 +16459,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
     __pyx_v_i = __pyx_t_3;
     __pyx_t_3 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":311
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":311
  *         for b from 0 <= b < n_f:
  *             i = self.f_index.arr[b]
  *             j = self.f_index.arr[b+1]             # <<<<<<<<<<<<<<
@@ -16654,7 +16476,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
     __pyx_v_j = __pyx_t_3;
     __pyx_t_3 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":312
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":312
  *             i = self.f_index.arr[b]
  *             j = self.f_index.arr[b+1]
  *             self.qsort(i,j, "")             # <<<<<<<<<<<<<<
@@ -16672,7 +16494,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
     __pyx_t_18 = __Pyx_PyInt_AsLong(__pyx_v_b); if (unlikely((__pyx_t_18 == (long)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":309
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":309
  * 
  *         # Sort buckets by eword
  *         for b from 0 <= b < n_f:             # <<<<<<<<<<<<<<
@@ -16718,7 +16540,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":315
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":315
  * 
  * 
  *     cdef swap(self, int i, int j):             # <<<<<<<<<<<<<<
@@ -16734,7 +16556,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("swap", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":319
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":319
  *         cdef float ftmp
  * 
  *         if i == j:             # <<<<<<<<<<<<<<
@@ -16744,7 +16566,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   __pyx_t_1 = (__pyx_v_i == __pyx_v_j);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":320
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":320
  * 
  *         if i == j:
  *             return             # <<<<<<<<<<<<<<
@@ -16758,7 +16580,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":322
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":322
  *             return
  * 
  *         itmp = self.e_index.arr[i]             # <<<<<<<<<<<<<<
@@ -16767,7 +16589,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   __pyx_v_itmp = (__pyx_v_self->e_index->arr[__pyx_v_i]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":323
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":323
  * 
  *         itmp = self.e_index.arr[i]
  *         self.e_index.arr[i] = self.e_index.arr[j]             # <<<<<<<<<<<<<<
@@ -16776,7 +16598,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   (__pyx_v_self->e_index->arr[__pyx_v_i]) = (__pyx_v_self->e_index->arr[__pyx_v_j]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":324
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":324
  *         itmp = self.e_index.arr[i]
  *         self.e_index.arr[i] = self.e_index.arr[j]
  *         self.e_index.arr[j] = itmp             # <<<<<<<<<<<<<<
@@ -16785,7 +16607,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   (__pyx_v_self->e_index->arr[__pyx_v_j]) = __pyx_v_itmp;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":326
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":326
  *         self.e_index.arr[j] = itmp
  * 
  *         ftmp = self.col1.arr[i]             # <<<<<<<<<<<<<<
@@ -16794,7 +16616,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   __pyx_v_ftmp = (__pyx_v_self->col1->arr[__pyx_v_i]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":327
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":327
  * 
  *         ftmp = self.col1.arr[i]
  *         self.col1.arr[i] = self.col1.arr[j]             # <<<<<<<<<<<<<<
@@ -16803,7 +16625,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   (__pyx_v_self->col1->arr[__pyx_v_i]) = (__pyx_v_self->col1->arr[__pyx_v_j]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":328
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":328
  *         ftmp = self.col1.arr[i]
  *         self.col1.arr[i] = self.col1.arr[j]
  *         self.col1.arr[j] = ftmp             # <<<<<<<<<<<<<<
@@ -16812,7 +16634,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   (__pyx_v_self->col1->arr[__pyx_v_j]) = __pyx_v_ftmp;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":330
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":330
  *         self.col1.arr[j] = ftmp
  * 
  *         ftmp = self.col2.arr[i]             # <<<<<<<<<<<<<<
@@ -16821,7 +16643,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   __pyx_v_ftmp = (__pyx_v_self->col2->arr[__pyx_v_i]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":331
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":331
  * 
  *         ftmp = self.col2.arr[i]
  *         self.col2.arr[i] = self.col2.arr[j]             # <<<<<<<<<<<<<<
@@ -16830,7 +16652,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
  */
   (__pyx_v_self->col2->arr[__pyx_v_i]) = (__pyx_v_self->col2->arr[__pyx_v_j]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":332
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":332
  *         ftmp = self.col2.arr[i]
  *         self.col2.arr[i] = self.col2.arr[j]
  *         self.col2.arr[j] = ftmp             # <<<<<<<<<<<<<<
@@ -16846,7 +16668,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_swap(struct __pyx_obj_3_sa_BiLex *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":335
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":335
  * 
  * 
  *     cdef qsort(self, int i, int j, pad):             # <<<<<<<<<<<<<<
@@ -16869,7 +16691,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("qsort", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":338
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":338
  *         cdef int pval, p
  * 
  *         if i > j:             # <<<<<<<<<<<<<<
@@ -16879,7 +16701,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   __pyx_t_1 = (__pyx_v_i > __pyx_v_j);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":339
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":339
  * 
  *         if i > j:
  *             raise Exception("Sort error in CLex")             # <<<<<<<<<<<<<<
@@ -16895,7 +16717,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":340
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":340
  *         if i > j:
  *             raise Exception("Sort error in CLex")
  *         if i == j: #empty interval             # <<<<<<<<<<<<<<
@@ -16905,7 +16727,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   __pyx_t_1 = (__pyx_v_i == __pyx_v_j);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":341
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":341
  *             raise Exception("Sort error in CLex")
  *         if i == j: #empty interval
  *             return             # <<<<<<<<<<<<<<
@@ -16919,7 +16741,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":342
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":342
  *         if i == j: #empty interval
  *             return
  *         if i == j-1: # singleton interval             # <<<<<<<<<<<<<<
@@ -16929,7 +16751,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   __pyx_t_1 = (__pyx_v_i == (__pyx_v_j - 1));
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":343
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":343
  *             return
  *         if i == j-1: # singleton interval
  *             return             # <<<<<<<<<<<<<<
@@ -16943,7 +16765,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   }
   __pyx_L5:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":345
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":345
  *             return
  * 
  *         p = (i+j)/2             # <<<<<<<<<<<<<<
@@ -16952,7 +16774,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
  */
   __pyx_v_p = __Pyx_div_long((__pyx_v_i + __pyx_v_j), 2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":346
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":346
  * 
  *         p = (i+j)/2
  *         pval = self.e_index.arr[p]             # <<<<<<<<<<<<<<
@@ -16961,7 +16783,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
  */
   __pyx_v_pval = (__pyx_v_self->e_index->arr[__pyx_v_p]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":347
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":347
  *         p = (i+j)/2
  *         pval = self.e_index.arr[p]
  *         self.swap(i, p)             # <<<<<<<<<<<<<<
@@ -16972,7 +16794,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   __Pyx_GOTREF(__pyx_t_2);
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":348
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":348
  *         pval = self.e_index.arr[p]
  *         self.swap(i, p)
  *         p = i             # <<<<<<<<<<<<<<
@@ -16981,7 +16803,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
  */
   __pyx_v_p = __pyx_v_i;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":349
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":349
  *         self.swap(i, p)
  *         p = i
  *         for k from i+1 <= k < j:             # <<<<<<<<<<<<<<
@@ -16991,7 +16813,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   __pyx_t_3 = __pyx_v_j;
   for (__pyx_v_k = (__pyx_v_i + 1); __pyx_v_k < __pyx_t_3; __pyx_v_k++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":350
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":350
  *         p = i
  *         for k from i+1 <= k < j:
  *             if pval >= self.e_index.arr[k]:             # <<<<<<<<<<<<<<
@@ -17001,7 +16823,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
     __pyx_t_1 = (__pyx_v_pval >= (__pyx_v_self->e_index->arr[__pyx_v_k]));
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":351
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":351
  *         for k from i+1 <= k < j:
  *             if pval >= self.e_index.arr[k]:
  *                 self.swap(p+1, k)             # <<<<<<<<<<<<<<
@@ -17012,7 +16834,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
       __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":352
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":352
  *             if pval >= self.e_index.arr[k]:
  *                 self.swap(p+1, k)
  *                 self.swap(p, p+1)             # <<<<<<<<<<<<<<
@@ -17023,7 +16845,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
       __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":353
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":353
  *                 self.swap(p+1, k)
  *                 self.swap(p, p+1)
  *                 p = p + 1             # <<<<<<<<<<<<<<
@@ -17036,7 +16858,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
     __pyx_L8:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":354
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":354
  *                 self.swap(p, p+1)
  *                 p = p + 1
  *         self.qsort(i,p, pad+"    ")             # <<<<<<<<<<<<<<
@@ -17050,7 +16872,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_qsort(struct __pyx_obj_3_sa_BiLex *__pyx_v_
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":355
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":355
  *                 p = p + 1
  *         self.qsort(i,p, pad+"    ")
  *         self.qsort(p+1,j, pad+"    ")             # <<<<<<<<<<<<<<
@@ -17098,7 +16920,7 @@ static PyObject *__pyx_pw_3_sa_5BiLex_13write_enhanced(PyObject *__pyx_v_self, P
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":358
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":358
  * 
  * 
  *     def write_enhanced(self, char* filename):             # <<<<<<<<<<<<<<
@@ -17135,7 +16957,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("write_enhanced", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":359
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":359
  * 
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -17175,7 +16997,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           __pyx_v_f = __pyx_t_4;
           __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":360
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":360
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:
  *             for i in self.f_index:             # <<<<<<<<<<<<<<
@@ -17193,18 +17015,10 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           for (;;) {
             if (!__pyx_t_9 && PyList_CheckExact(__pyx_t_4)) {
               if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_4)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_1 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_1); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 360; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_1 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 360; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_1 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_1); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_4)) {
               if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_4)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_1); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 360; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_1 = PySequence_ITEM(__pyx_t_4, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 360; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_8); __Pyx_INCREF(__pyx_t_1); __pyx_t_8++;
             } else {
               __pyx_t_1 = __pyx_t_9(__pyx_t_4);
               if (unlikely(!__pyx_t_1)) {
@@ -17220,7 +17034,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
             __pyx_v_i = __pyx_t_1;
             __pyx_t_1 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":361
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":361
  *         with open(filename, "w") as f:
  *             for i in self.f_index:
  *                 f.write("%d " % i)             # <<<<<<<<<<<<<<
@@ -17244,7 +17058,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           }
           __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":362
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":362
  *             for i in self.f_index:
  *                 f.write("%d " % i)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -17258,7 +17072,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":363
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":363
  *                 f.write("%d " % i)
  *             f.write("\n")
  *             for i, s1, s2 in zip(self.e_index, self.col1, self.col2):             # <<<<<<<<<<<<<<
@@ -17291,18 +17105,10 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           for (;;) {
             if (!__pyx_t_9 && PyList_CheckExact(__pyx_t_2)) {
               if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_2)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_2)) {
               if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_4); __pyx_t_8++;
             } else {
               __pyx_t_4 = __pyx_t_9(__pyx_t_2);
               if (unlikely(!__pyx_t_4)) {
@@ -17316,22 +17122,21 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
             }
             if ((likely(PyTuple_CheckExact(__pyx_t_4))) || (PyList_CheckExact(__pyx_t_4))) {
               PyObject* sequence = __pyx_t_4;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              Py_ssize_t size = Py_SIZE(sequence);
-              #else
-              Py_ssize_t size = PySequence_Size(sequence);
-              #endif
-              if (unlikely(size != 3)) {
-                if (size > 3) __Pyx_RaiseTooManyValuesError(3);
-                else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
-                {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              }
-              #if CYTHON_COMPILING_IN_CPYTHON
               if (likely(PyTuple_CheckExact(sequence))) {
+                if (unlikely(PyTuple_GET_SIZE(sequence) != 3)) {
+                  if (PyTuple_GET_SIZE(sequence) > 3) __Pyx_RaiseTooManyValuesError(3);
+                  else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+                }
                 __pyx_t_10 = PyTuple_GET_ITEM(sequence, 0); 
                 __pyx_t_1 = PyTuple_GET_ITEM(sequence, 1); 
                 __pyx_t_11 = PyTuple_GET_ITEM(sequence, 2); 
               } else {
+                if (unlikely(PyList_GET_SIZE(sequence) != 3)) {
+                  if (PyList_GET_SIZE(sequence) > 3) __Pyx_RaiseTooManyValuesError(3);
+                  else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+                }
                 __pyx_t_10 = PyList_GET_ITEM(sequence, 0); 
                 __pyx_t_1 = PyList_GET_ITEM(sequence, 1); 
                 __pyx_t_11 = PyList_GET_ITEM(sequence, 2); 
@@ -17339,14 +17144,8 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
               __Pyx_INCREF(__pyx_t_10);
               __Pyx_INCREF(__pyx_t_1);
               __Pyx_INCREF(__pyx_t_11);
-              #else
-              __pyx_t_10 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              __pyx_t_1 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              __pyx_t_11 = PySequence_ITEM(sequence, 2); if (unlikely(!__pyx_t_11)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
               __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
-            } else
-            {
+            } else {
               Py_ssize_t index = -1;
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@@ -17359,13 +17158,12 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
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-              __pyx_t_13 = NULL;
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               __Pyx_DECREF(__pyx_t_12); __pyx_t_12 = 0;
-              __pyx_t_13 = NULL;
-              if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
+              if (PyErr_Occurred() && PyErr_ExceptionMatches(PyExc_StopIteration)) PyErr_Clear();
+              if (!PyErr_Occurred()) __Pyx_RaiseNeedMoreValuesError(index);
               {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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@@ -17379,7 +17177,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
             __pyx_v_s2 = __pyx_t_11;
             __pyx_t_11 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":364
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":364
  *             f.write("\n")
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@@ -17415,7 +17213,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           }
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":365
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":365
  *             for i, s1, s2 in zip(self.e_index, self.col1, self.col2):
  *                 f.write("%d %f %f " % (i, s1, s2))
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -17429,7 +17227,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
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           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":366
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":366
  *                 f.write("%d %f %f " % (i, s1, s2))
  *             f.write("\n")
  *             for i, w in enumerate(self.id2fword):             # <<<<<<<<<<<<<<
@@ -17449,18 +17247,10 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
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             if (!__pyx_t_9 && PyList_CheckExact(__pyx_t_2)) {
               if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_2)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_11 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_11); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_11 = PySequence_ITEM(__pyx_t_2, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_11)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_11 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_11); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_2)) {
               if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_11 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_11); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_11 = PySequence_ITEM(__pyx_t_2, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_11)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_11 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_11); __pyx_t_8++;
             } else {
               __pyx_t_11 = __pyx_t_9(__pyx_t_2);
               if (unlikely(!__pyx_t_11)) {
@@ -17484,7 +17274,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
             __pyx_t_1 = __pyx_t_11;
             __pyx_t_11 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":367
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":367
  *             f.write("\n")
  *             for i, w in enumerate(self.id2fword):
  *                 f.write("%d %s " % (i, w))             # <<<<<<<<<<<<<<
@@ -17518,7 +17308,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
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           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":368
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":368
  *             for i, w in enumerate(self.id2fword):
  *                 f.write("%d %s " % (i, w))
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -17532,7 +17322,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":369
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":369
  *                 f.write("%d %s " % (i, w))
  *             f.write("\n")
  *             for i, w in enumerate(self.id2eword):             # <<<<<<<<<<<<<<
@@ -17552,18 +17342,10 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           for (;;) {
             if (!__pyx_t_9 && PyList_CheckExact(__pyx_t_1)) {
               if (__pyx_t_8 >= PyList_GET_SIZE(__pyx_t_1)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_10 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_10); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 369; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_10 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 369; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_10 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_10); __pyx_t_8++;
             } else if (!__pyx_t_9 && PyTuple_CheckExact(__pyx_t_1)) {
               if (__pyx_t_8 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_10 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_10); __pyx_t_8++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 369; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #else
-              __pyx_t_10 = PySequence_ITEM(__pyx_t_1, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 369; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
-              #endif
+              __pyx_t_10 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_8); __Pyx_INCREF(__pyx_t_10); __pyx_t_8++;
             } else {
               __pyx_t_10 = __pyx_t_9(__pyx_t_1);
               if (unlikely(!__pyx_t_10)) {
@@ -17587,7 +17369,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
             __pyx_t_2 = __pyx_t_10;
             __pyx_t_10 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":370
+            /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":370
  *             f.write("\n")
  *             for i, w in enumerate(self.id2eword):
  *                 f.write("%d %s " % (i, w))             # <<<<<<<<<<<<<<
@@ -17621,7 +17403,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":371
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":371
  *             for i, w in enumerate(self.id2eword):
  *                 f.write("%d %s " % (i, w))
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -17647,7 +17429,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
         __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
         __Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":359
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":359
  * 
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -17755,11 +17537,11 @@ static PyObject *__pyx_pw_3_sa_5BiLex_15get_score(PyObject *__pyx_v_self, PyObje
   PyObject *__pyx_v_fword = 0;
   PyObject *__pyx_v_eword = 0;
   PyObject *__pyx_v_col = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__fword,&__pyx_n_s__eword,&__pyx_n_s__col,0};
   PyObject *__pyx_r = 0;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("get_score (wrapper)", 0);
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-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__fword,&__pyx_n_s__eword,&__pyx_n_s__col,0};
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     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -17774,15 +17556,18 @@ static PyObject *__pyx_pw_3_sa_5BiLex_15get_score(PyObject *__pyx_v_self, PyObje
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__fword)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__fword);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
         case  1:
-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__eword)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__eword);
+        if (likely(values[1])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("get_score", 1, 3, 3, 1); {__pyx_filename = __pyx_f[5]; __pyx_lineno = 374; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
         case  2:
-        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__col)) != 0)) kw_args--;
+        values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__col);
+        if (likely(values[2])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("get_score", 1, 3, 3, 2); {__pyx_filename = __pyx_f[5]; __pyx_lineno = 374; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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@@ -17814,7 +17599,7 @@ static PyObject *__pyx_pw_3_sa_5BiLex_15get_score(PyObject *__pyx_v_self, PyObje
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":374
+/* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":374
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  * 
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@@ -17840,17 +17625,17 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
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   __Pyx_RefNannySetupContext("get_score", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":377
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":377
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-  __pyx_t_1 = (__Pyx_PySequence_Contains(__pyx_v_eword, __pyx_v_self->eword2id, Py_NE)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 377; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = (__Pyx_NegateNonNeg(PySequence_Contains(__pyx_v_self->eword2id, __pyx_v_eword))); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 377; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":378
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":378
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  *         if eword not in self.eword2id:
  *             return None             # <<<<<<<<<<<<<<
@@ -17865,17 +17650,17 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
   }
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-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":379
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":379
  *         if eword not in self.eword2id:
  *             return None
  *         if fword not in self.fword2id:             # <<<<<<<<<<<<<<
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-  __pyx_t_1 = (__Pyx_PySequence_Contains(__pyx_v_fword, __pyx_v_self->fword2id, Py_NE)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 379; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = (__Pyx_NegateNonNeg(PySequence_Contains(__pyx_v_self->fword2id, __pyx_v_fword))); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 379; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":380
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":380
  *             return None
  *         if fword not in self.fword2id:
  *             return None             # <<<<<<<<<<<<<<
@@ -17890,7 +17675,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
   }
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-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":381
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":381
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  *             return None
  *         f_id = self.fword2id[fword]             # <<<<<<<<<<<<<<
@@ -17902,7 +17687,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
   __pyx_v_f_id = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":382
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":382
  *             return None
  *         f_id = self.fword2id[fword]
  *         e_id = self.eword2id[eword]             # <<<<<<<<<<<<<<
@@ -17914,7 +17699,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
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   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":383
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":383
  *         f_id = self.fword2id[fword]
  *         e_id = self.eword2id[eword]
  *         low = self.f_index.arr[f_id]             # <<<<<<<<<<<<<<
@@ -17927,7 +17712,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
   __pyx_v_low = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":384
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":384
  *         e_id = self.eword2id[eword]
  *         low = self.f_index.arr[f_id]
  *         high = self.f_index.arr[f_id+1]             # <<<<<<<<<<<<<<
@@ -17943,7 +17728,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
   __pyx_v_high = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":385
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":385
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  *         high = self.f_index.arr[f_id+1]
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@@ -17953,13 +17738,14 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
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-    __pyx_t_4 = PyObject_RichCompare(__pyx_t_2, __pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 385; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = PyObject_RichCompare(__pyx_t_2, __pyx_int_0, Py_GT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 385; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_4);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
     __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 385; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
     if (!__pyx_t_1) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":386
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":386
  *         high = self.f_index.arr[f_id+1]
  *         while high - low > 0:
  *             midpoint = (low+high)/2             # <<<<<<<<<<<<<<
@@ -17975,7 +17761,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_14get_score(struct __pyx_obj_3_sa_BiLex *_
     __pyx_v_midpoint = __pyx_t_2;
     __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":387
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":387
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-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":388
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":388
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+    __pyx_t_2 = PyObject_RichCompare(__pyx_v_val, __pyx_v_e_id, Py_EQ); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 388; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":389
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":389
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-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":390
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":390
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-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":391
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":391
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+      __pyx_t_2 = PyObject_RichCompare(__pyx_v_col, __pyx_int_1, Py_EQ); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 391; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":392
+        /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":392
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-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":393
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":393
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-    __pyx_t_2 = PyObject_RichCompare(__pyx_v_val, __pyx_v_e_id, Py_GT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 393; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyObject_RichCompare(__pyx_v_val, __pyx_v_e_id, Py_GT); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 393; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":394
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":394
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-    /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":395
+    /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":395
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+    __pyx_t_2 = PyObject_RichCompare(__pyx_v_val, __pyx_v_e_id, Py_LT); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 395; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_2);
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-      /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":396
+      /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":396
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-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":397
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":397
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-/* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":400
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-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":404
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-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":405
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":405
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-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":406
+          /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":406
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-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":407
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-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":408
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-              /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":409
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-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":410
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-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":411
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-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":412
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-            /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":413
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-          /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":407
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-        /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":404
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-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":21
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-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":23
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-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":24
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":24
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-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":25
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":25
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-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":26
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":26
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-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":40
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-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":41
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-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":42
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  *     b.bitset = 0
  *     b.min_val = -1             # <<<<<<<<<<<<<<
@@ -18630,7 +18422,7 @@ static struct __pyx_t_3_sa__BitSet *__pyx_f_3_sa_new_BitSet(void) {
  */
   __pyx_v_b->min_val = -1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":43
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":43
  *     b.bitset = 0
  *     b.min_val = -1
  *     b.max_val = -1             # <<<<<<<<<<<<<<
@@ -18639,7 +18431,7 @@ static struct __pyx_t_3_sa__BitSet *__pyx_f_3_sa_new_BitSet(void) {
  */
   __pyx_v_b->max_val = -1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":44
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":44
  *     b.min_val = -1
  *     b.max_val = -1
  *     b.size = 0             # <<<<<<<<<<<<<<
@@ -18648,7 +18440,7 @@ static struct __pyx_t_3_sa__BitSet *__pyx_f_3_sa_new_BitSet(void) {
  */
   __pyx_v_b->size = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":45
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":45
  *     b.max_val = -1
  *     b.size = 0
  *     return b             # <<<<<<<<<<<<<<
@@ -18664,7 +18456,7 @@ static struct __pyx_t_3_sa__BitSet *__pyx_f_3_sa_new_BitSet(void) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":48
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":48
  * 
  * 
  * cdef int bitset_findsucc(_BitSet* b, int i):             # <<<<<<<<<<<<<<
@@ -18685,7 +18477,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("bitset_findsucc", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":52
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":52
  *     cdef int low, high, mid
  * 
  *     if b.max_val == -1 or i >= b.max_val:             # <<<<<<<<<<<<<<
@@ -18701,7 +18493,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   }
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":53
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":53
  * 
  *     if b.max_val == -1 or i >= b.max_val:
  *         return -1             # <<<<<<<<<<<<<<
@@ -18714,7 +18506,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":54
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":54
  *     if b.max_val == -1 or i >= b.max_val:
  *         return -1
  *     if i < b.min_val:             # <<<<<<<<<<<<<<
@@ -18724,7 +18516,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   __pyx_t_3 = (__pyx_v_i < __pyx_v_b->min_val);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":55
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":55
  *         return -1
  *     if i < b.min_val:
  *         return b.min_val             # <<<<<<<<<<<<<<
@@ -18737,7 +18529,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":57
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":57
  *         return b.min_val
  * 
  *     bitset = b.bitset & ~LOWER_MASK[i]             # <<<<<<<<<<<<<<
@@ -18746,7 +18538,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
  */
   __pyx_v_bitset = (__pyx_v_b->bitset & (~(__pyx_v_3_sa_LOWER_MASK[__pyx_v_i])));
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":58
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":58
  * 
  *     bitset = b.bitset & ~LOWER_MASK[i]
  *     low = i+1             # <<<<<<<<<<<<<<
@@ -18755,7 +18547,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
  */
   __pyx_v_low = (__pyx_v_i + 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":59
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":59
  *     bitset = b.bitset & ~LOWER_MASK[i]
  *     low = i+1
  *     high = b.max_val+1             # <<<<<<<<<<<<<<
@@ -18764,7 +18556,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
  */
   __pyx_v_high = (__pyx_v_b->max_val + 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":60
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":60
  *     low = i+1
  *     high = b.max_val+1
  *     while low < high-1:             # <<<<<<<<<<<<<<
@@ -18775,7 +18567,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
     __pyx_t_3 = (__pyx_v_low < (__pyx_v_high - 1));
     if (!__pyx_t_3) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":61
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":61
  *     high = b.max_val+1
  *     while low < high-1:
  *         mid = (high + low)/2             # <<<<<<<<<<<<<<
@@ -18784,7 +18576,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
  */
     __pyx_v_mid = __Pyx_div_long((__pyx_v_high + __pyx_v_low), 2);
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":62
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":62
  *     while low < high-1:
  *         mid = (high + low)/2
  *         mask = ~(LOWER_MASK[high-1] ^ LOWER_MASK[mid-1])             # <<<<<<<<<<<<<<
@@ -18793,7 +18585,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
  */
     __pyx_v_mask = (~((__pyx_v_3_sa_LOWER_MASK[(__pyx_v_high - 1)]) ^ (__pyx_v_3_sa_LOWER_MASK[(__pyx_v_mid - 1)])));
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":63
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":63
  *         mid = (high + low)/2
  *         mask = ~(LOWER_MASK[high-1] ^ LOWER_MASK[mid-1])
  *         if bitset & mask == 0:             # <<<<<<<<<<<<<<
@@ -18803,7 +18595,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
     __pyx_t_3 = ((__pyx_v_bitset & __pyx_v_mask) == 0);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":64
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":64
  *         mask = ~(LOWER_MASK[high-1] ^ LOWER_MASK[mid-1])
  *         if bitset & mask == 0:
  *             low = mid             # <<<<<<<<<<<<<<
@@ -18815,7 +18607,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":66
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":66
  *             low = mid
  *         else:
  *             bitset = bitset & mask             # <<<<<<<<<<<<<<
@@ -18824,7 +18616,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
  */
       __pyx_v_bitset = (__pyx_v_bitset & __pyx_v_mask);
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":67
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":67
  *         else:
  *             bitset = bitset & mask
  *             high = mid             # <<<<<<<<<<<<<<
@@ -18836,7 +18628,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
     __pyx_L7:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":68
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":68
  *             bitset = bitset & mask
  *             high = mid
  *     return low             # <<<<<<<<<<<<<<
@@ -18852,7 +18644,7 @@ static int __pyx_f_3_sa_bitset_findsucc(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":71
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":71
  * 
  * 
  * cdef int bitset_insert(_BitSet* b, int i):             # <<<<<<<<<<<<<<
@@ -18867,7 +18659,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("bitset_insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":74
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":74
  *     cdef int val
  * 
  *     val = 1 << i             # <<<<<<<<<<<<<<
@@ -18876,7 +18668,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
  */
   __pyx_v_val = (1 << __pyx_v_i);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":75
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":75
  * 
  *     val = 1 << i
  *     if b.bitset & val == 0:             # <<<<<<<<<<<<<<
@@ -18886,7 +18678,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
   __pyx_t_1 = ((__pyx_v_b->bitset & __pyx_v_val) == 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":76
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":76
  *     val = 1 << i
  *     if b.bitset & val == 0:
  *         b.bitset = b.bitset | val             # <<<<<<<<<<<<<<
@@ -18895,7 +18687,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
  */
     __pyx_v_b->bitset = (__pyx_v_b->bitset | __pyx_v_val);
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":77
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":77
  *     if b.bitset & val == 0:
  *         b.bitset = b.bitset | val
  *         if b.size == 0:             # <<<<<<<<<<<<<<
@@ -18905,7 +18697,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
     __pyx_t_1 = (__pyx_v_b->size == 0);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":78
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":78
  *         b.bitset = b.bitset | val
  *         if b.size == 0:
  *             b.min_val = i             # <<<<<<<<<<<<<<
@@ -18914,7 +18706,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
  */
       __pyx_v_b->min_val = __pyx_v_i;
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":79
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":79
  *         if b.size == 0:
  *             b.min_val = i
  *             b.max_val = i             # <<<<<<<<<<<<<<
@@ -18926,7 +18718,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":81
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":81
  *             b.max_val = i
  *         else:
  *             if i < b.min_val:             # <<<<<<<<<<<<<<
@@ -18936,7 +18728,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
       __pyx_t_1 = (__pyx_v_i < __pyx_v_b->min_val);
       if (__pyx_t_1) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":82
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":82
  *         else:
  *             if i < b.min_val:
  *                 b.min_val = i             # <<<<<<<<<<<<<<
@@ -18948,7 +18740,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
       }
       __pyx_L5:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":83
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":83
  *             if i < b.min_val:
  *                 b.min_val = i
  *             if i > b.max_val:             # <<<<<<<<<<<<<<
@@ -18958,7 +18750,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
       __pyx_t_1 = (__pyx_v_i > __pyx_v_b->max_val);
       if (__pyx_t_1) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":84
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":84
  *                 b.min_val = i
  *             if i > b.max_val:
  *                 b.max_val = i             # <<<<<<<<<<<<<<
@@ -18972,7 +18764,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
     }
     __pyx_L4:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":85
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":85
  *             if i > b.max_val:
  *                 b.max_val = i
  *         b.size = b.size + 1             # <<<<<<<<<<<<<<
@@ -18981,7 +18773,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
  */
     __pyx_v_b->size = (__pyx_v_b->size + 1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":86
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":86
  *                 b.max_val = i
  *         b.size = b.size + 1
  *         return 1             # <<<<<<<<<<<<<<
@@ -18994,7 +18786,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":87
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":87
  *         b.size = b.size + 1
  *         return 1
  *     return 0             # <<<<<<<<<<<<<<
@@ -19010,7 +18802,7 @@ static int __pyx_f_3_sa_bitset_insert(struct __pyx_t_3_sa__BitSet *__pyx_v_b, in
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":90
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":90
  * 
  * 
  * cdef int bitset_contains(_BitSet* b, int i):             # <<<<<<<<<<<<<<
@@ -19025,7 +18817,7 @@ static int __pyx_f_3_sa_bitset_contains(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("bitset_contains", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":93
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":93
  *     cdef int val
  * 
  *     val = 1 << i             # <<<<<<<<<<<<<<
@@ -19034,7 +18826,7 @@ static int __pyx_f_3_sa_bitset_contains(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
  */
   __pyx_v_val = (1 << __pyx_v_i);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":94
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":94
  * 
  *     val = 1 << i
  *     if b.bitset & val == 0:             # <<<<<<<<<<<<<<
@@ -19044,7 +18836,7 @@ static int __pyx_f_3_sa_bitset_contains(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   __pyx_t_1 = ((__pyx_v_b->bitset & __pyx_v_val) == 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":95
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":95
  *     val = 1 << i
  *     if b.bitset & val == 0:
  *         return 0             # <<<<<<<<<<<<<<
@@ -19057,7 +18849,7 @@ static int __pyx_f_3_sa_bitset_contains(struct __pyx_t_3_sa__BitSet *__pyx_v_b,
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":97
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":97
  *         return 0
  *     else:
  *         return 1             # <<<<<<<<<<<<<<
@@ -19086,7 +18878,7 @@ static PyObject *__pyx_pw_3_sa_14BitSetIterator_1__next__(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":104
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":104
  *     cdef int next_val
  * 
  *     def __next__(self):             # <<<<<<<<<<<<<<
@@ -19105,7 +18897,7 @@ static PyObject *__pyx_pf_3_sa_14BitSetIterator___next__(struct __pyx_obj_3_sa_B
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__next__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":107
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":107
  *         cdef int ret_val
  * 
  *         if self.next_val == -1:             # <<<<<<<<<<<<<<
@@ -19115,7 +18907,7 @@ static PyObject *__pyx_pf_3_sa_14BitSetIterator___next__(struct __pyx_obj_3_sa_B
   __pyx_t_1 = (__pyx_v_self->next_val == -1);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":108
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":108
  * 
  *         if self.next_val == -1:
  *             raise StopIteration()             # <<<<<<<<<<<<<<
@@ -19131,7 +18923,7 @@ static PyObject *__pyx_pf_3_sa_14BitSetIterator___next__(struct __pyx_obj_3_sa_B
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":109
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":109
  *         if self.next_val == -1:
  *             raise StopIteration()
  *         ret_val = self.next_val             # <<<<<<<<<<<<<<
@@ -19140,7 +18932,7 @@ static PyObject *__pyx_pf_3_sa_14BitSetIterator___next__(struct __pyx_obj_3_sa_B
  */
   __pyx_v_ret_val = __pyx_v_self->next_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":110
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":110
  *             raise StopIteration()
  *         ret_val = self.next_val
  *         self.next_val = bitset_findsucc(self.b, ret_val)             # <<<<<<<<<<<<<<
@@ -19149,7 +18941,7 @@ static PyObject *__pyx_pf_3_sa_14BitSetIterator___next__(struct __pyx_obj_3_sa_B
  */
   __pyx_v_self->next_val = __pyx_f_3_sa_bitset_findsucc(__pyx_v_self->b, __pyx_v_ret_val);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":111
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":111
  *         ret_val = self.next_val
  *         self.next_val = bitset_findsucc(self.b, ret_val)
  *         return ret_val             # <<<<<<<<<<<<<<
@@ -19189,7 +18981,7 @@ static int __pyx_pw_3_sa_6BitSet_1__cinit__(PyObject *__pyx_v_self, PyObject *__
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":122
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":122
  *     cdef _BitSet* b
  * 
  *     def __cinit__(self):             # <<<<<<<<<<<<<<
@@ -19202,7 +18994,7 @@ static int __pyx_pf_3_sa_6BitSet___cinit__(struct __pyx_obj_3_sa_BitSet *__pyx_v
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":123
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":123
  * 
  *     def __cinit__(self):
  *         self.b = new_BitSet()             # <<<<<<<<<<<<<<
@@ -19225,7 +19017,7 @@ static void __pyx_pw_3_sa_6BitSet_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":125
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":125
  *         self.b = new_BitSet()
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -19237,7 +19029,7 @@ static void __pyx_pf_3_sa_6BitSet_2__dealloc__(struct __pyx_obj_3_sa_BitSet *__p
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":126
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":126
  * 
  *     def __dealloc__(self):
  *         free(self.b)             # <<<<<<<<<<<<<<
@@ -19260,7 +19052,7 @@ static PyObject *__pyx_pw_3_sa_6BitSet_5__iter__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":128
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":128
  *         free(self.b)
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -19278,7 +19070,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_4__iter__(struct __pyx_obj_3_sa_BitSet *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__iter__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":130
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":130
  *     def __iter__(self):
  *         cdef BitSetIterator it
  *         it = BitSetIterator()             # <<<<<<<<<<<<<<
@@ -19290,7 +19082,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_4__iter__(struct __pyx_obj_3_sa_BitSet *_
   __pyx_v_it = ((struct __pyx_obj_3_sa_BitSetIterator *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":131
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":131
  *         cdef BitSetIterator it
  *         it = BitSetIterator()
  *         it.b = self.b             # <<<<<<<<<<<<<<
@@ -19299,7 +19091,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_4__iter__(struct __pyx_obj_3_sa_BitSet *_
  */
   __pyx_v_it->b = __pyx_v_self->b;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":132
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":132
  *         it = BitSetIterator()
  *         it.b = self.b
  *         it.next_val = self.b.min_val             # <<<<<<<<<<<<<<
@@ -19308,7 +19100,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_4__iter__(struct __pyx_obj_3_sa_BitSet *_
  */
   __pyx_v_it->next_val = __pyx_v_self->b->min_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":133
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":133
  *         it.b = self.b
  *         it.next_val = self.b.min_val
  *         return it             # <<<<<<<<<<<<<<
@@ -19344,7 +19136,7 @@ static PyObject *__pyx_pw_3_sa_6BitSet_7insert(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":135
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":135
  *         return it
  * 
  *     def insert(self, i):             # <<<<<<<<<<<<<<
@@ -19362,7 +19154,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_6insert(struct __pyx_obj_3_sa_BitSet *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":136
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":136
  * 
  *     def insert(self, i):
  *         return bitset_insert(self.b, i)             # <<<<<<<<<<<<<<
@@ -19400,7 +19192,7 @@ static PyObject *__pyx_pw_3_sa_6BitSet_9findsucc(PyObject *__pyx_v_self, PyObjec
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":138
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":138
  *         return bitset_insert(self.b, i)
  * 
  *     def findsucc(self, i):             # <<<<<<<<<<<<<<
@@ -19418,7 +19210,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_8findsucc(struct __pyx_obj_3_sa_BitSet *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("findsucc", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":139
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":139
  * 
  *     def findsucc(self, i):
  *         return bitset_findsucc(self.b, i)             # <<<<<<<<<<<<<<
@@ -19456,7 +19248,7 @@ static PyObject *__pyx_pw_3_sa_6BitSet_11__str__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":141
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":141
  *         return bitset_findsucc(self.b, i)
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -19475,7 +19267,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_10__str__(struct __pyx_obj_3_sa_BitSet *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__str__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":142
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":142
  * 
  *     def __str__(self):
  *         return dec2bin(self.b.bitset)+"  ("+str(self.b.size)+","+str(self.b.min_val)+","+str(self.b.max_val)+")"             # <<<<<<<<<<<<<<
@@ -19568,7 +19360,7 @@ static PyObject *__pyx_pw_3_sa_6BitSet_13min(PyObject *__pyx_v_self, CYTHON_UNUS
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":144
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":144
  *         return dec2bin(self.b.bitset)+"  ("+str(self.b.size)+","+str(self.b.min_val)+","+str(self.b.max_val)+")"
  * 
  *     def min(self):             # <<<<<<<<<<<<<<
@@ -19585,7 +19377,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_12min(struct __pyx_obj_3_sa_BitSet *__pyx
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("min", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":145
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":145
  * 
  *     def min(self):
  *         return self.b.min_val             # <<<<<<<<<<<<<<
@@ -19622,7 +19414,7 @@ static PyObject *__pyx_pw_3_sa_6BitSet_15max(PyObject *__pyx_v_self, CYTHON_UNUS
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":147
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":147
  *         return self.b.min_val
  * 
  *     def max(self):             # <<<<<<<<<<<<<<
@@ -19639,7 +19431,7 @@ static PyObject *__pyx_pf_3_sa_6BitSet_14max(struct __pyx_obj_3_sa_BitSet *__pyx
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("max", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":148
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":148
  * 
  *     def max(self):
  *         return self.b.max_val             # <<<<<<<<<<<<<<
@@ -19676,7 +19468,7 @@ static Py_ssize_t __pyx_pw_3_sa_6BitSet_17__len__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":150
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":150
  *         return self.b.max_val
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -19689,7 +19481,7 @@ static Py_ssize_t __pyx_pf_3_sa_6BitSet_16__len__(struct __pyx_obj_3_sa_BitSet *
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":151
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":151
  * 
  *     def __len__(self):
  *         return self.b.size             # <<<<<<<<<<<<<<
@@ -19716,7 +19508,7 @@ static int __pyx_pw_3_sa_6BitSet_19__contains__(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":153
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":153
  *         return self.b.size
  * 
  *     def __contains__(self, i):             # <<<<<<<<<<<<<<
@@ -19735,7 +19527,7 @@ static int __pyx_pf_3_sa_6BitSet_18__contains__(struct __pyx_obj_3_sa_BitSet *__
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__contains__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":154
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":154
  * 
  *     def __contains__(self, i):
  *         return bool(bitset_contains(self.b, i))             # <<<<<<<<<<<<<<
@@ -19761,7 +19553,7 @@ static int __pyx_pf_3_sa_6BitSet_18__contains__(struct __pyx_obj_3_sa_BitSet *__
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":157
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":157
  * 
  * 
  * cdef str dec2bin(long i):             # <<<<<<<<<<<<<<
@@ -19783,7 +19575,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("dec2bin", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":158
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":158
  * 
  * cdef str dec2bin(long i):
  *     cdef str result = ""             # <<<<<<<<<<<<<<
@@ -19793,7 +19585,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
   __Pyx_INCREF(((PyObject *)__pyx_kp_s_45));
   __pyx_v_result = __pyx_kp_s_45;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":160
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":160
  *     cdef str result = ""
  *     cdef unsigned d
  *     for d in range(MIN_BOTTOM_SIZE):             # <<<<<<<<<<<<<<
@@ -19804,7 +19596,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
   for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_1; __pyx_t_2+=1) {
     __pyx_v_d = __pyx_t_2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":161
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":161
  *     cdef unsigned d
  *     for d in range(MIN_BOTTOM_SIZE):
  *         if i & LOWER_MASK[0] == 0:             # <<<<<<<<<<<<<<
@@ -19814,7 +19606,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
     __pyx_t_3 = ((__pyx_v_i & (__pyx_v_3_sa_LOWER_MASK[0])) == 0);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":162
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":162
  *     for d in range(MIN_BOTTOM_SIZE):
  *         if i & LOWER_MASK[0] == 0:
  *             result = "0"+result             # <<<<<<<<<<<<<<
@@ -19830,7 +19622,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":164
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":164
  *             result = "0"+result
  *         else:
  *             result = "1"+result             # <<<<<<<<<<<<<<
@@ -19845,7 +19637,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":165
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":165
  *         else:
  *             result = "1"+result
  *         i = i >> 1             # <<<<<<<<<<<<<<
@@ -19855,7 +19647,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
     __pyx_v_i = (__pyx_v_i >> 1);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":166
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":166
  *             result = "1"+result
  *         i = i >> 1
  *     return result             # <<<<<<<<<<<<<<
@@ -19880,7 +19672,7 @@ static PyObject *__pyx_f_3_sa_dec2bin(long __pyx_v_i) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":177
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":177
  *     void** bottom
  * 
  * cdef _VEB* new_VEB(int n):             # <<<<<<<<<<<<<<
@@ -19901,7 +19693,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("new_VEB", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":181
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":181
  *     cdef int num_bits, num_top_bits, i
  * 
  *     veb = <_VEB*> malloc(sizeof(_VEB))             # <<<<<<<<<<<<<<
@@ -19910,7 +19702,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   __pyx_v_veb = ((struct __pyx_t_3_sa__VEB *)malloc((sizeof(struct __pyx_t_3_sa__VEB))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":183
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":183
  *     veb = <_VEB*> malloc(sizeof(_VEB))
  * 
  *     num_bits = int(ceil(log(n) / log(2)))             # <<<<<<<<<<<<<<
@@ -19925,7 +19717,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   }
   __pyx_v_num_bits = ((int)ceil((__pyx_t_1 / __pyx_t_2)));
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":184
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":184
  * 
  *     num_bits = int(ceil(log(n) / log(2)))
  *     veb.num_bottom_bits = num_bits/2             # <<<<<<<<<<<<<<
@@ -19934,7 +19726,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   __pyx_v_veb->num_bottom_bits = __Pyx_div_long(__pyx_v_num_bits, 2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":185
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":185
  *     num_bits = int(ceil(log(n) / log(2)))
  *     veb.num_bottom_bits = num_bits/2
  *     if veb.num_bottom_bits < MIN_BOTTOM_BITS:             # <<<<<<<<<<<<<<
@@ -19944,7 +19736,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   __pyx_t_3 = (__pyx_v_veb->num_bottom_bits < __pyx_v_3_sa_MIN_BOTTOM_BITS);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":186
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":186
  *     veb.num_bottom_bits = num_bits/2
  *     if veb.num_bottom_bits < MIN_BOTTOM_BITS:
  *         veb.num_bottom_bits = MIN_BOTTOM_BITS             # <<<<<<<<<<<<<<
@@ -19956,7 +19748,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":187
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":187
  *     if veb.num_bottom_bits < MIN_BOTTOM_BITS:
  *         veb.num_bottom_bits = MIN_BOTTOM_BITS
  *     veb.top_universe_size = (n >> veb.num_bottom_bits) + 1             # <<<<<<<<<<<<<<
@@ -19965,7 +19757,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   __pyx_v_veb->top_universe_size = ((__pyx_v_n >> __pyx_v_veb->num_bottom_bits) + 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":189
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":189
  *     veb.top_universe_size = (n >> veb.num_bottom_bits) + 1
  * 
  *     veb.bottom = <void**> malloc(veb.top_universe_size * sizeof(void*))             # <<<<<<<<<<<<<<
@@ -19974,7 +19766,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   __pyx_v_veb->bottom = ((void **)malloc((__pyx_v_veb->top_universe_size * (sizeof(void *)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":190
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":190
  * 
  *     veb.bottom = <void**> malloc(veb.top_universe_size * sizeof(void*))
  *     memset(veb.bottom, 0, veb.top_universe_size * sizeof(void*))             # <<<<<<<<<<<<<<
@@ -19983,7 +19775,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   memset(__pyx_v_veb->bottom, 0, (__pyx_v_veb->top_universe_size * (sizeof(void *))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":192
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":192
  *     memset(veb.bottom, 0, veb.top_universe_size * sizeof(void*))
  * 
  *     if veb.top_universe_size > MIN_BOTTOM_SIZE:             # <<<<<<<<<<<<<<
@@ -19993,7 +19785,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   __pyx_t_3 = (__pyx_v_veb->top_universe_size > __pyx_v_3_sa_MIN_BOTTOM_SIZE);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":193
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":193
  * 
  *     if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *         veb.top = new_VEB(veb.top_universe_size)             # <<<<<<<<<<<<<<
@@ -20005,7 +19797,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":195
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":195
  *         veb.top = new_VEB(veb.top_universe_size)
  *     else:
  *         veb.top = new_BitSet()             # <<<<<<<<<<<<<<
@@ -20016,7 +19808,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":197
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":197
  *         veb.top = new_BitSet()
  * 
  *     veb.max_val = -1             # <<<<<<<<<<<<<<
@@ -20025,7 +19817,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   __pyx_v_veb->max_val = -1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":198
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":198
  * 
  *     veb.max_val = -1
  *     veb.min_val = -1             # <<<<<<<<<<<<<<
@@ -20034,7 +19826,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   __pyx_v_veb->min_val = -1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":199
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":199
  *     veb.max_val = -1
  *     veb.min_val = -1
  *     veb.size = 0             # <<<<<<<<<<<<<<
@@ -20043,7 +19835,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
  */
   __pyx_v_veb->size = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":200
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":200
  *     veb.min_val = -1
  *     veb.size = 0
  *     return veb             # <<<<<<<<<<<<<<
@@ -20063,7 +19855,7 @@ static struct __pyx_t_3_sa__VEB *__pyx_f_3_sa_new_VEB(int __pyx_v_n) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":203
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":203
  * 
  * 
  * cdef int VEB_insert(_VEB* veb, int i):             # <<<<<<<<<<<<<<
@@ -20084,7 +19876,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("VEB_insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":208
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":208
  *     cdef int a, b, tmp
  * 
  *     if veb.size == 0:             # <<<<<<<<<<<<<<
@@ -20094,7 +19886,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
   __pyx_t_1 = (__pyx_v_veb->size == 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":209
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":209
  * 
  *     if veb.size == 0:
  *         veb.min_val = i             # <<<<<<<<<<<<<<
@@ -20103,7 +19895,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
     __pyx_v_veb->min_val = __pyx_v_i;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":210
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":210
  *     if veb.size == 0:
  *         veb.min_val = i
  *         veb.max_val = i             # <<<<<<<<<<<<<<
@@ -20114,7 +19906,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":211
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":211
  *         veb.min_val = i
  *         veb.max_val = i
  *     elif i == veb.min_val or i == veb.max_val:             # <<<<<<<<<<<<<<
@@ -20130,7 +19922,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
   }
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":212
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":212
  *         veb.max_val = i
  *     elif i == veb.min_val or i == veb.max_val:
  *         return 0             # <<<<<<<<<<<<<<
@@ -20143,7 +19935,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":214
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":214
  *         return 0
  *     else:
  *         if i < veb.min_val:             # <<<<<<<<<<<<<<
@@ -20153,7 +19945,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     __pyx_t_3 = (__pyx_v_i < __pyx_v_veb->min_val);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":215
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":215
  *     else:
  *         if i < veb.min_val:
  *             tmp = i             # <<<<<<<<<<<<<<
@@ -20162,7 +19954,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
       __pyx_v_tmp = __pyx_v_i;
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":216
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":216
  *         if i < veb.min_val:
  *             tmp = i
  *             i = veb.min_val             # <<<<<<<<<<<<<<
@@ -20171,7 +19963,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
       __pyx_v_i = __pyx_v_veb->min_val;
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":217
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":217
  *             tmp = i
  *             i = veb.min_val
  *             veb.min_val = tmp             # <<<<<<<<<<<<<<
@@ -20183,7 +19975,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     }
     __pyx_L4:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":218
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":218
  *             i = veb.min_val
  *             veb.min_val = tmp
  *         a = i >> veb.num_bottom_bits             # <<<<<<<<<<<<<<
@@ -20192,7 +19984,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
     __pyx_v_a = (__pyx_v_i >> __pyx_v_veb->num_bottom_bits);
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":219
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":219
  *             veb.min_val = tmp
  *         a = i >> veb.num_bottom_bits
  *         b = i & LOWER_MASK[veb.num_bottom_bits-1]             # <<<<<<<<<<<<<<
@@ -20201,7 +19993,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
     __pyx_v_b = (__pyx_v_i & (__pyx_v_3_sa_LOWER_MASK[(__pyx_v_veb->num_bottom_bits - 1)]));
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":220
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":220
  *         a = i >> veb.num_bottom_bits
  *         b = i & LOWER_MASK[veb.num_bottom_bits-1]
  *         if veb.bottom[a] == NULL:             # <<<<<<<<<<<<<<
@@ -20211,7 +20003,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     __pyx_t_3 = ((__pyx_v_veb->bottom[__pyx_v_a]) == NULL);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":221
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":221
  *         b = i & LOWER_MASK[veb.num_bottom_bits-1]
  *         if veb.bottom[a] == NULL:
  *             if veb.top_universe_size > MIN_BOTTOM_SIZE:             # <<<<<<<<<<<<<<
@@ -20221,7 +20013,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
       __pyx_t_3 = (__pyx_v_veb->top_universe_size > __pyx_v_3_sa_MIN_BOTTOM_SIZE);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":222
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":222
  *         if veb.bottom[a] == NULL:
  *             if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *                 subv = <_VEB*> veb.top             # <<<<<<<<<<<<<<
@@ -20230,7 +20022,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
         __pyx_v_subv = ((struct __pyx_t_3_sa__VEB *)__pyx_v_veb->top);
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":223
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":223
  *             if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *                 subv = <_VEB*> veb.top
  *                 VEB_insert(subv, a)             # <<<<<<<<<<<<<<
@@ -20242,7 +20034,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":225
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":225
  *                 VEB_insert(subv, a)
  *             else:
  *                 subb = <_BitSet*> veb.top             # <<<<<<<<<<<<<<
@@ -20251,7 +20043,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
         __pyx_v_subb = ((struct __pyx_t_3_sa__BitSet *)__pyx_v_veb->top);
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":226
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":226
  *             else:
  *                 subb = <_BitSet*> veb.top
  *                 bitset_insert(subb, a)             # <<<<<<<<<<<<<<
@@ -20262,7 +20054,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
       }
       __pyx_L6:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":227
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":227
  *                 subb = <_BitSet*> veb.top
  *                 bitset_insert(subb, a)
  *             if veb.num_bottom_bits > MIN_BOTTOM_BITS:             # <<<<<<<<<<<<<<
@@ -20272,7 +20064,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
       __pyx_t_3 = (__pyx_v_veb->num_bottom_bits > __pyx_v_3_sa_MIN_BOTTOM_BITS);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":228
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":228
  *                 bitset_insert(subb, a)
  *             if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *                 veb.bottom[a] = new_VEB(1 << veb.num_bottom_bits)             # <<<<<<<<<<<<<<
@@ -20284,7 +20076,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":230
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":230
  *                 veb.bottom[a] = new_VEB(1 << veb.num_bottom_bits)
  *             else:
  *                 veb.bottom[a] = new_BitSet()             # <<<<<<<<<<<<<<
@@ -20298,7 +20090,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":231
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":231
  *             else:
  *                 veb.bottom[a] = new_BitSet()
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:             # <<<<<<<<<<<<<<
@@ -20308,7 +20100,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     __pyx_t_3 = (__pyx_v_veb->num_bottom_bits > __pyx_v_3_sa_MIN_BOTTOM_BITS);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":232
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":232
  *                 veb.bottom[a] = new_BitSet()
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[a]             # <<<<<<<<<<<<<<
@@ -20317,7 +20109,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
       __pyx_v_subv = ((struct __pyx_t_3_sa__VEB *)(__pyx_v_veb->bottom[__pyx_v_a]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":233
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":233
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[a]
  *             if VEB_insert(subv, b) == 0:             # <<<<<<<<<<<<<<
@@ -20327,7 +20119,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
       __pyx_t_3 = (__pyx_f_3_sa_VEB_insert(__pyx_v_subv, __pyx_v_b) == 0);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":234
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":234
  *             subv = <_VEB*> veb.bottom[a]
  *             if VEB_insert(subv, b) == 0:
  *                 return 0             # <<<<<<<<<<<<<<
@@ -20343,7 +20135,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":236
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":236
  *                 return 0
  *         else:
  *             subb = <_BitSet*> veb.bottom[a]             # <<<<<<<<<<<<<<
@@ -20352,7 +20144,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
       __pyx_v_subb = ((struct __pyx_t_3_sa__BitSet *)(__pyx_v_veb->bottom[__pyx_v_a]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":237
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":237
  *         else:
  *             subb = <_BitSet*> veb.bottom[a]
  *             if bitset_insert(subb, b) == 0:             # <<<<<<<<<<<<<<
@@ -20362,7 +20154,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
       __pyx_t_3 = (__pyx_f_3_sa_bitset_insert(__pyx_v_subb, __pyx_v_b) == 0);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":238
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":238
  *             subb = <_BitSet*> veb.bottom[a]
  *             if bitset_insert(subb, b) == 0:
  *                 return 0             # <<<<<<<<<<<<<<
@@ -20377,7 +20169,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     }
     __pyx_L8:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":240
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":240
  *                 return 0
  * 
  *         if i > veb.max_val:             # <<<<<<<<<<<<<<
@@ -20387,7 +20179,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
     __pyx_t_3 = (__pyx_v_i > __pyx_v_veb->max_val);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":241
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":241
  * 
  *         if i > veb.max_val:
  *             veb.max_val = i             # <<<<<<<<<<<<<<
@@ -20401,7 +20193,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":242
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":242
  *         if i > veb.max_val:
  *             veb.max_val = i
  *     veb.size = veb.size + 1             # <<<<<<<<<<<<<<
@@ -20410,7 +20202,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
  */
   __pyx_v_veb->size = (__pyx_v_veb->size + 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":243
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":243
  *             veb.max_val = i
  *     veb.size = veb.size + 1
  *     return 1             # <<<<<<<<<<<<<<
@@ -20426,7 +20218,7 @@ static int __pyx_f_3_sa_VEB_insert(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int __
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":246
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":246
  * 
  * 
  * cdef del_VEB(_VEB* veb):             # <<<<<<<<<<<<<<
@@ -20445,7 +20237,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("del_VEB", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":249
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":249
  *     cdef int i
  * 
  *     if veb.top_universe_size > MIN_BOTTOM_SIZE:             # <<<<<<<<<<<<<<
@@ -20455,7 +20247,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   __pyx_t_1 = (__pyx_v_veb->top_universe_size > __pyx_v_3_sa_MIN_BOTTOM_SIZE);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":250
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":250
  * 
  *     if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *         i = (<_VEB*> veb.top).min_val             # <<<<<<<<<<<<<<
@@ -20467,7 +20259,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":252
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":252
  *         i = (<_VEB*> veb.top).min_val
  *     else:
  *         i = (<_BitSet*> veb.top).min_val             # <<<<<<<<<<<<<<
@@ -20478,7 +20270,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":254
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":254
  *         i = (<_BitSet*> veb.top).min_val
  * 
  *     while i != -1:             # <<<<<<<<<<<<<<
@@ -20489,7 +20281,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
     __pyx_t_1 = (__pyx_v_i != -1);
     if (!__pyx_t_1) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":255
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":255
  * 
  *     while i != -1:
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:             # <<<<<<<<<<<<<<
@@ -20499,7 +20291,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
     __pyx_t_1 = (__pyx_v_veb->num_bottom_bits > __pyx_v_3_sa_MIN_BOTTOM_BITS);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":256
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":256
  *     while i != -1:
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             del_VEB(<_VEB*> veb.bottom[i])             # <<<<<<<<<<<<<<
@@ -20513,7 +20305,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":258
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":258
  *             del_VEB(<_VEB*> veb.bottom[i])
  *         else:
  *             free(<_BitSet*> veb.bottom[i])             # <<<<<<<<<<<<<<
@@ -20524,7 +20316,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
     }
     __pyx_L6:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":260
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":260
  *             free(<_BitSet*> veb.bottom[i])
  * 
  *         if veb.top_universe_size > MIN_BOTTOM_SIZE:             # <<<<<<<<<<<<<<
@@ -20534,7 +20326,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
     __pyx_t_1 = (__pyx_v_veb->top_universe_size > __pyx_v_3_sa_MIN_BOTTOM_SIZE);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":261
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":261
  * 
  *         if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *             i = VEB_findsucc(<_VEB*> veb.top, i)             # <<<<<<<<<<<<<<
@@ -20546,7 +20338,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":263
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":263
  *             i = VEB_findsucc(<_VEB*> veb.top, i)
  *         else:
  *             i = bitset_findsucc(<_BitSet*> veb.top, i)             # <<<<<<<<<<<<<<
@@ -20558,7 +20350,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
     __pyx_L7:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":265
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":265
  *             i = bitset_findsucc(<_BitSet*> veb.top, i)
  * 
  *     if veb.top_universe_size > MIN_BOTTOM_SIZE:             # <<<<<<<<<<<<<<
@@ -20568,7 +20360,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   __pyx_t_1 = (__pyx_v_veb->top_universe_size > __pyx_v_3_sa_MIN_BOTTOM_SIZE);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":266
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":266
  * 
  *     if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *         del_VEB(<_VEB*> veb.top)             # <<<<<<<<<<<<<<
@@ -20582,7 +20374,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":268
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":268
  *         del_VEB(<_VEB*> veb.top)
  *     else:
  *         free(<_BitSet*> veb.top)             # <<<<<<<<<<<<<<
@@ -20593,7 +20385,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   }
   __pyx_L8:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":269
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":269
  *     else:
  *         free(<_BitSet*> veb.top)
  *     free(veb.bottom)             # <<<<<<<<<<<<<<
@@ -20602,7 +20394,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
  */
   free(__pyx_v_veb->bottom);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":270
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":270
  *         free(<_BitSet*> veb.top)
  *     free(veb.bottom)
  *     free(veb)             # <<<<<<<<<<<<<<
@@ -20623,7 +20415,7 @@ static PyObject *__pyx_f_3_sa_del_VEB(struct __pyx_t_3_sa__VEB *__pyx_v_veb) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":273
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":273
  * 
  * 
  * cdef int VEB_findsucc(_VEB* veb, int i):             # <<<<<<<<<<<<<<
@@ -20646,7 +20438,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("VEB_findsucc", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":278
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":278
  *     cdef int a, b, j, c, found
  * 
  *     if veb.max_val == -1 or i>=veb.max_val:             # <<<<<<<<<<<<<<
@@ -20662,7 +20454,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":279
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":279
  * 
  *     if veb.max_val == -1 or i>=veb.max_val:
  *         return -1             # <<<<<<<<<<<<<<
@@ -20675,7 +20467,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":280
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":280
  *     if veb.max_val == -1 or i>=veb.max_val:
  *         return -1
  *     if i < veb.min_val:             # <<<<<<<<<<<<<<
@@ -20685,7 +20477,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   __pyx_t_3 = (__pyx_v_i < __pyx_v_veb->min_val);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":281
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":281
  *         return -1
  *     if i < veb.min_val:
  *         return veb.min_val             # <<<<<<<<<<<<<<
@@ -20698,7 +20490,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":283
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":283
  *         return veb.min_val
  * 
  *     a = i >> veb.num_bottom_bits             # <<<<<<<<<<<<<<
@@ -20707,7 +20499,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
   __pyx_v_a = (__pyx_v_i >> __pyx_v_veb->num_bottom_bits);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":284
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":284
  * 
  *     a = i >> veb.num_bottom_bits
  *     b = i & LOWER_MASK[veb.num_bottom_bits-1]             # <<<<<<<<<<<<<<
@@ -20716,7 +20508,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
   __pyx_v_b = (__pyx_v_i & (__pyx_v_3_sa_LOWER_MASK[(__pyx_v_veb->num_bottom_bits - 1)]));
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":285
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":285
  *     a = i >> veb.num_bottom_bits
  *     b = i & LOWER_MASK[veb.num_bottom_bits-1]
  *     found = 0             # <<<<<<<<<<<<<<
@@ -20725,7 +20517,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
   __pyx_v_found = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":286
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":286
  *     b = i & LOWER_MASK[veb.num_bottom_bits-1]
  *     found = 0
  *     if veb.bottom[a] != NULL:             # <<<<<<<<<<<<<<
@@ -20735,7 +20527,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   __pyx_t_3 = ((__pyx_v_veb->bottom[__pyx_v_a]) != NULL);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":287
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":287
  *     found = 0
  *     if veb.bottom[a] != NULL:
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:             # <<<<<<<<<<<<<<
@@ -20745,7 +20537,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     __pyx_t_3 = (__pyx_v_veb->num_bottom_bits > __pyx_v_3_sa_MIN_BOTTOM_BITS);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":288
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":288
  *     if veb.bottom[a] != NULL:
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[a]             # <<<<<<<<<<<<<<
@@ -20754,7 +20546,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subv = ((struct __pyx_t_3_sa__VEB *)(__pyx_v_veb->bottom[__pyx_v_a]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":289
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":289
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[a]
  *             if subv.max_val > b:             # <<<<<<<<<<<<<<
@@ -20764,7 +20556,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
       __pyx_t_3 = (__pyx_v_subv->max_val > __pyx_v_b);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":290
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":290
  *             subv = <_VEB*> veb.bottom[a]
  *             if subv.max_val > b:
  *                 j = (a << veb.num_bottom_bits) + VEB_findsucc(subv, b)             # <<<<<<<<<<<<<<
@@ -20773,7 +20565,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
         __pyx_v_j = ((__pyx_v_a << __pyx_v_veb->num_bottom_bits) + __pyx_f_3_sa_VEB_findsucc(__pyx_v_subv, __pyx_v_b));
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":291
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":291
  *             if subv.max_val > b:
  *                 j = (a << veb.num_bottom_bits) + VEB_findsucc(subv, b)
  *                 found = 1             # <<<<<<<<<<<<<<
@@ -20788,7 +20580,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":293
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":293
  *                 found = 1
  *         else:
  *             subb = <_BitSet*> veb.bottom[a]             # <<<<<<<<<<<<<<
@@ -20797,7 +20589,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subb = ((struct __pyx_t_3_sa__BitSet *)(__pyx_v_veb->bottom[__pyx_v_a]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":294
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":294
  *         else:
  *             subb = <_BitSet*> veb.bottom[a]
  *             if subb.max_val > b:             # <<<<<<<<<<<<<<
@@ -20807,7 +20599,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
       __pyx_t_3 = (__pyx_v_subb->max_val > __pyx_v_b);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":295
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":295
  *             subb = <_BitSet*> veb.bottom[a]
  *             if subb.max_val > b:
  *                 j = (a << veb.num_bottom_bits) + bitset_findsucc(subb, b)             # <<<<<<<<<<<<<<
@@ -20816,7 +20608,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
         __pyx_v_j = ((__pyx_v_a << __pyx_v_veb->num_bottom_bits) + __pyx_f_3_sa_bitset_findsucc(__pyx_v_subb, __pyx_v_b));
 
-        /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":296
+        /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":296
  *             if subb.max_val > b:
  *                 j = (a << veb.num_bottom_bits) + bitset_findsucc(subb, b)
  *                 found = 1             # <<<<<<<<<<<<<<
@@ -20833,7 +20625,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   __pyx_L5:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":297
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":297
  *                 j = (a << veb.num_bottom_bits) + bitset_findsucc(subb, b)
  *                 found = 1
  *     if found==0:             # <<<<<<<<<<<<<<
@@ -20843,7 +20635,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   __pyx_t_3 = (__pyx_v_found == 0);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":298
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":298
  *                 found = 1
  *     if found==0:
  *         if veb.top_universe_size > MIN_BOTTOM_SIZE:             # <<<<<<<<<<<<<<
@@ -20853,7 +20645,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     __pyx_t_3 = (__pyx_v_veb->top_universe_size > __pyx_v_3_sa_MIN_BOTTOM_SIZE);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":299
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":299
  *     if found==0:
  *         if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *             subv = <_VEB*> veb.top             # <<<<<<<<<<<<<<
@@ -20862,7 +20654,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subv = ((struct __pyx_t_3_sa__VEB *)__pyx_v_veb->top);
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":300
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":300
  *         if veb.top_universe_size > MIN_BOTTOM_SIZE:
  *             subv = <_VEB*> veb.top
  *             c = VEB_findsucc(subv, a)             # <<<<<<<<<<<<<<
@@ -20874,7 +20666,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":302
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":302
  *             c = VEB_findsucc(subv, a)
  *         else:
  *             subb = <_BitSet*> veb.top             # <<<<<<<<<<<<<<
@@ -20883,7 +20675,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subb = ((struct __pyx_t_3_sa__BitSet *)__pyx_v_veb->top);
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":303
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":303
  *         else:
  *             subb = <_BitSet*> veb.top
  *             c = bitset_findsucc(subb, a)             # <<<<<<<<<<<<<<
@@ -20894,7 +20686,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     }
     __pyx_L10:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":304
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":304
  *             subb = <_BitSet*> veb.top
  *             c = bitset_findsucc(subb, a)
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:             # <<<<<<<<<<<<<<
@@ -20904,7 +20696,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     __pyx_t_3 = (__pyx_v_veb->num_bottom_bits > __pyx_v_3_sa_MIN_BOTTOM_BITS);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":305
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":305
  *             c = bitset_findsucc(subb, a)
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[c]             # <<<<<<<<<<<<<<
@@ -20913,7 +20705,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subv = ((struct __pyx_t_3_sa__VEB *)(__pyx_v_veb->bottom[__pyx_v_c]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":306
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":306
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[c]
  *             j = (c << veb.num_bottom_bits) + subv.min_val             # <<<<<<<<<<<<<<
@@ -20925,7 +20717,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":308
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":308
  *             j = (c << veb.num_bottom_bits) + subv.min_val
  *         else:
  *             subb = <_BitSet*> veb.bottom[c]             # <<<<<<<<<<<<<<
@@ -20934,7 +20726,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subb = ((struct __pyx_t_3_sa__BitSet *)(__pyx_v_veb->bottom[__pyx_v_c]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":309
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":309
  *         else:
  *             subb = <_BitSet*> veb.bottom[c]
  *             j = (c << veb.num_bottom_bits) + subb.min_val             # <<<<<<<<<<<<<<
@@ -20948,7 +20740,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   __pyx_L9:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":310
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":310
  *             subb = <_BitSet*> veb.bottom[c]
  *             j = (c << veb.num_bottom_bits) + subb.min_val
  *     return j             # <<<<<<<<<<<<<<
@@ -20964,7 +20756,7 @@ static int __pyx_f_3_sa_VEB_findsucc(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":313
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":313
  * 
  * 
  * cdef int VEB_contains(_VEB* veb, int i):             # <<<<<<<<<<<<<<
@@ -20985,7 +20777,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   int __pyx_t_4;
   __Pyx_RefNannySetupContext("VEB_contains", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":318
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":318
  *     cdef int a, b
  * 
  *     if veb.size == 0 or i < veb.min_val or i > veb.max_val:             # <<<<<<<<<<<<<<
@@ -21007,7 +20799,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":319
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":319
  * 
  *     if veb.size == 0 or i < veb.min_val or i > veb.max_val:
  *         return 0             # <<<<<<<<<<<<<<
@@ -21020,7 +20812,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":321
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":321
  *         return 0
  * 
  *     if veb.min_val == i:             # <<<<<<<<<<<<<<
@@ -21030,7 +20822,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   __pyx_t_2 = (__pyx_v_veb->min_val == __pyx_v_i);
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":322
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":322
  * 
  *     if veb.min_val == i:
  *         return 1             # <<<<<<<<<<<<<<
@@ -21043,7 +20835,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":324
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":324
  *         return 1
  *     else:
  *         if veb.size == 1:             # <<<<<<<<<<<<<<
@@ -21053,7 +20845,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     __pyx_t_2 = (__pyx_v_veb->size == 1);
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":325
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":325
  *     else:
  *         if veb.size == 1:
  *             return 0             # <<<<<<<<<<<<<<
@@ -21068,7 +20860,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":327
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":327
  *             return 0
  * 
  *     a = i >> veb.num_bottom_bits             # <<<<<<<<<<<<<<
@@ -21077,7 +20869,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
   __pyx_v_a = (__pyx_v_i >> __pyx_v_veb->num_bottom_bits);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":328
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":328
  * 
  *     a = i >> veb.num_bottom_bits
  *     b = i & LOWER_MASK[veb.num_bottom_bits-1]             # <<<<<<<<<<<<<<
@@ -21086,7 +20878,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
   __pyx_v_b = (__pyx_v_i & (__pyx_v_3_sa_LOWER_MASK[(__pyx_v_veb->num_bottom_bits - 1)]));
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":329
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":329
  *     a = i >> veb.num_bottom_bits
  *     b = i & LOWER_MASK[veb.num_bottom_bits-1]
  *     if veb.bottom[a] == NULL:             # <<<<<<<<<<<<<<
@@ -21096,7 +20888,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   __pyx_t_2 = ((__pyx_v_veb->bottom[__pyx_v_a]) == NULL);
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":330
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":330
  *     b = i & LOWER_MASK[veb.num_bottom_bits-1]
  *     if veb.bottom[a] == NULL:
  *         return 0             # <<<<<<<<<<<<<<
@@ -21109,7 +20901,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":332
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":332
  *         return 0
  *     else:
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:             # <<<<<<<<<<<<<<
@@ -21119,7 +20911,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     __pyx_t_2 = (__pyx_v_veb->num_bottom_bits > __pyx_v_3_sa_MIN_BOTTOM_BITS);
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":333
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":333
  *     else:
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[a]             # <<<<<<<<<<<<<<
@@ -21128,7 +20920,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subv = ((struct __pyx_t_3_sa__VEB *)(__pyx_v_veb->bottom[__pyx_v_a]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":334
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":334
  *         if veb.num_bottom_bits > MIN_BOTTOM_BITS:
  *             subv = <_VEB*> veb.bottom[a]
  *             return VEB_contains(subv, b)             # <<<<<<<<<<<<<<
@@ -21141,7 +20933,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":336
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":336
  *             return VEB_contains(subv, b)
  *         else:
  *             subb = <_BitSet*> veb.bottom[a]             # <<<<<<<<<<<<<<
@@ -21150,7 +20942,7 @@ static int __pyx_f_3_sa_VEB_contains(struct __pyx_t_3_sa__VEB *__pyx_v_veb, int
  */
       __pyx_v_subb = ((struct __pyx_t_3_sa__BitSet *)(__pyx_v_veb->bottom[__pyx_v_a]));
 
-      /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":337
+      /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":337
  *         else:
  *             subb = <_BitSet*> veb.bottom[a]
  *             return bitset_contains(subb, b)             # <<<<<<<<<<<<<<
@@ -21181,7 +20973,7 @@ static PyObject *__pyx_pw_3_sa_11VEBIterator_1__next__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":344
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":344
  *     cdef int next_val
  * 
  *     def __next__(self):             # <<<<<<<<<<<<<<
@@ -21200,7 +20992,7 @@ static PyObject *__pyx_pf_3_sa_11VEBIterator___next__(struct __pyx_obj_3_sa_VEBI
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__next__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":347
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":347
  *         cdef int ret_val
  * 
  *         if self.next_val == -1:             # <<<<<<<<<<<<<<
@@ -21210,7 +21002,7 @@ static PyObject *__pyx_pf_3_sa_11VEBIterator___next__(struct __pyx_obj_3_sa_VEBI
   __pyx_t_1 = (__pyx_v_self->next_val == -1);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":348
+    /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":348
  * 
  *         if self.next_val == -1:
  *             raise StopIteration()             # <<<<<<<<<<<<<<
@@ -21226,7 +21018,7 @@ static PyObject *__pyx_pf_3_sa_11VEBIterator___next__(struct __pyx_obj_3_sa_VEBI
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":349
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":349
  *         if self.next_val == -1:
  *             raise StopIteration()
  *         ret_val = self.next_val             # <<<<<<<<<<<<<<
@@ -21235,7 +21027,7 @@ static PyObject *__pyx_pf_3_sa_11VEBIterator___next__(struct __pyx_obj_3_sa_VEBI
  */
   __pyx_v_ret_val = __pyx_v_self->next_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":350
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":350
  *             raise StopIteration()
  *         ret_val = self.next_val
  *         self.next_val = VEB_findsucc(self.v, ret_val)             # <<<<<<<<<<<<<<
@@ -21244,7 +21036,7 @@ static PyObject *__pyx_pf_3_sa_11VEBIterator___next__(struct __pyx_obj_3_sa_VEBI
  */
   __pyx_v_self->next_val = __pyx_f_3_sa_VEB_findsucc(__pyx_v_self->v, __pyx_v_ret_val);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":351
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":351
  *         ret_val = self.next_val
  *         self.next_val = VEB_findsucc(self.v, ret_val)
  *         return ret_val             # <<<<<<<<<<<<<<
@@ -21274,11 +21066,11 @@ static PyObject *__pyx_pf_3_sa_11VEBIterator___next__(struct __pyx_obj_3_sa_VEBI
 static int __pyx_pw_3_sa_3VEB_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
 static int __pyx_pw_3_sa_3VEB_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   int __pyx_v_size;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__size,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__size,0};
     PyObject* values[1] = {0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -21291,7 +21083,8 @@ static int __pyx_pw_3_sa_3VEB_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__size)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__size);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
       }
       if (unlikely(kw_args > 0)) {
@@ -21317,7 +21110,7 @@ static int __pyx_pw_3_sa_3VEB_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":360
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":360
  *     cdef int _first(self)
  * 
  *     def __cinit__(self, int size):             # <<<<<<<<<<<<<<
@@ -21330,7 +21123,7 @@ static int __pyx_pf_3_sa_3VEB___cinit__(struct __pyx_obj_3_sa_VEB *__pyx_v_self,
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":361
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":361
  * 
  *     def __cinit__(self, int size):
  *         self.veb = new_VEB(size)             # <<<<<<<<<<<<<<
@@ -21353,7 +21146,7 @@ static void __pyx_pw_3_sa_3VEB_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":363
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":363
  *         self.veb = new_VEB(size)
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -21369,7 +21162,7 @@ static void __pyx_pf_3_sa_3VEB_2__dealloc__(struct __pyx_obj_3_sa_VEB *__pyx_v_s
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":364
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":364
  * 
  *     def __dealloc__(self):
  *         del_VEB(self.veb)             # <<<<<<<<<<<<<<
@@ -21399,7 +21192,7 @@ static PyObject *__pyx_pw_3_sa_3VEB_5__iter__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":366
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":366
  *         del_VEB(self.veb)
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -21417,7 +21210,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_4__iter__(struct __pyx_obj_3_sa_VEB *__pyx_v
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__iter__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":368
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":368
  *     def __iter__(self):
  *         cdef VEBIterator it
  *         it = VEBIterator()             # <<<<<<<<<<<<<<
@@ -21429,7 +21222,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_4__iter__(struct __pyx_obj_3_sa_VEB *__pyx_v
   __pyx_v_it = ((struct __pyx_obj_3_sa_VEBIterator *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":369
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":369
  *         cdef VEBIterator it
  *         it = VEBIterator()
  *         it.v = self.veb             # <<<<<<<<<<<<<<
@@ -21438,7 +21231,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_4__iter__(struct __pyx_obj_3_sa_VEB *__pyx_v
  */
   __pyx_v_it->v = __pyx_v_self->veb;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":370
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":370
  *         it = VEBIterator()
  *         it.v = self.veb
  *         it.next_val = self.veb.min_val             # <<<<<<<<<<<<<<
@@ -21447,7 +21240,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_4__iter__(struct __pyx_obj_3_sa_VEB *__pyx_v
  */
   __pyx_v_it->next_val = __pyx_v_self->veb->min_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":371
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":371
  *         it.v = self.veb
  *         it.next_val = self.veb.min_val
  *         return it             # <<<<<<<<<<<<<<
@@ -21483,7 +21276,7 @@ static PyObject *__pyx_pw_3_sa_3VEB_7insert(PyObject *__pyx_v_self, PyObject *__
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":373
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":373
  *         return it
  * 
  *     def insert(self, i):             # <<<<<<<<<<<<<<
@@ -21501,7 +21294,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_6insert(struct __pyx_obj_3_sa_VEB *__pyx_v_s
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":374
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":374
  * 
  *     def insert(self, i):
  *         return VEB_insert(self.veb, i)             # <<<<<<<<<<<<<<
@@ -21528,7 +21321,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_6insert(struct __pyx_obj_3_sa_VEB *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":376
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":376
  *         return VEB_insert(self.veb, i)
  * 
  *     cdef int _insert(self, int i):             # <<<<<<<<<<<<<<
@@ -21541,7 +21334,7 @@ static int __pyx_f_3_sa_3VEB__insert(struct __pyx_obj_3_sa_VEB *__pyx_v_self, in
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("_insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":377
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":377
  * 
  *     cdef int _insert(self, int i):
  *         return VEB_insert(self.veb, i)             # <<<<<<<<<<<<<<
@@ -21568,7 +21361,7 @@ static PyObject *__pyx_pw_3_sa_3VEB_9findsucc(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":379
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":379
  *         return VEB_insert(self.veb, i)
  * 
  *     def findsucc(self, i):             # <<<<<<<<<<<<<<
@@ -21586,7 +21379,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_8findsucc(struct __pyx_obj_3_sa_VEB *__pyx_v
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("findsucc", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":380
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":380
  * 
  *     def findsucc(self, i):
  *         return VEB_findsucc(self.veb, i)             # <<<<<<<<<<<<<<
@@ -21613,7 +21406,7 @@ static PyObject *__pyx_pf_3_sa_3VEB_8findsucc(struct __pyx_obj_3_sa_VEB *__pyx_v
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":382
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":382
  *         return VEB_findsucc(self.veb, i)
  * 
  *     cdef int _first(self):             # <<<<<<<<<<<<<<
@@ -21626,7 +21419,7 @@ static int __pyx_f_3_sa_3VEB__first(struct __pyx_obj_3_sa_VEB *__pyx_v_self) {
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("_first", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":383
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":383
  * 
  *     cdef int _first(self):
  *         return self.veb.min_val             # <<<<<<<<<<<<<<
@@ -21642,7 +21435,7 @@ static int __pyx_f_3_sa_3VEB__first(struct __pyx_obj_3_sa_VEB *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":385
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":385
  *         return self.veb.min_val
  * 
  *     cdef int _findsucc(self, int i):             # <<<<<<<<<<<<<<
@@ -21655,7 +21448,7 @@ static int __pyx_f_3_sa_3VEB__findsucc(struct __pyx_obj_3_sa_VEB *__pyx_v_self,
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("_findsucc", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":386
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":386
  * 
  *     cdef int _findsucc(self, int i):
  *         return VEB_findsucc(self.veb, i)             # <<<<<<<<<<<<<<
@@ -21682,7 +21475,7 @@ static Py_ssize_t __pyx_pw_3_sa_3VEB_11__len__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":388
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":388
  *         return VEB_findsucc(self.veb, i)
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -21695,7 +21488,7 @@ static Py_ssize_t __pyx_pf_3_sa_3VEB_10__len__(struct __pyx_obj_3_sa_VEB *__pyx_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":389
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":389
  * 
  *     def __len__(self):
  *         return self.veb.size             # <<<<<<<<<<<<<<
@@ -21722,7 +21515,7 @@ static int __pyx_pw_3_sa_3VEB_13__contains__(PyObject *__pyx_v_self, PyObject *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/veb.pxi":391
+/* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":391
  *         return self.veb.size
  * 
  *     def __contains__(self, i):             # <<<<<<<<<<<<<<
@@ -21738,7 +21531,7 @@ static int __pyx_pf_3_sa_3VEB_12__contains__(struct __pyx_obj_3_sa_VEB *__pyx_v_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__contains__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":392
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":392
  * 
  *     def __contains__(self, i):
  *         return VEB_contains(self.veb, i)             # <<<<<<<<<<<<<<
@@ -21761,11 +21554,11 @@ static int __pyx_pf_3_sa_3VEB_12__contains__(struct __pyx_obj_3_sa_VEB *__pyx_v_
 static int __pyx_pw_3_sa_3LCP_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
 static int __pyx_pw_3_sa_3LCP_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   struct __pyx_obj_3_sa_SuffixArray *__pyx_v_sa = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__sa,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__sa,0};
     PyObject* values[1] = {0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -21778,7 +21571,8 @@ static int __pyx_pw_3_sa_3LCP_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__sa)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__sa);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
       }
       if (unlikely(kw_args > 0)) {
@@ -21809,7 +21603,7 @@ static int __pyx_pw_3_sa_3LCP_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":9
+/* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":9
  *     cdef IntList lcp
  * 
  *     def __cinit__(self, SuffixArray sa):             # <<<<<<<<<<<<<<
@@ -21838,7 +21632,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":13
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":13
  *         cdef IntList rank
  * 
  *         logger.info("Constructing LCP array")             # <<<<<<<<<<<<<<
@@ -21855,7 +21649,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":14
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":14
  * 
  *         logger.info("Constructing LCP array")
  *         self.sa = sa             # <<<<<<<<<<<<<<
@@ -21868,7 +21662,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
   __Pyx_DECREF(((PyObject *)__pyx_v_self->sa));
   __pyx_v_self->sa = __pyx_v_sa;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":15
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":15
  *         logger.info("Constructing LCP array")
  *         self.sa = sa
  *         n = self.sa.sa.len             # <<<<<<<<<<<<<<
@@ -21877,7 +21671,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
  */
   __pyx_v_n = __pyx_v_self->sa->sa->len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":16
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":16
  *         self.sa = sa
  *         n = self.sa.sa.len
  *         self.lcp = IntList(initial_len=n)             # <<<<<<<<<<<<<<
@@ -21899,7 +21693,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
   __pyx_v_self->lcp = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":18
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":18
  *         self.lcp = IntList(initial_len=n)
  * 
  *         rank = IntList(initial_len=n)             # <<<<<<<<<<<<<<
@@ -21918,7 +21712,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
   __pyx_v_rank = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":19
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":19
  * 
  *         rank = IntList(initial_len=n)
  *         for i from 0 <= i < n:             # <<<<<<<<<<<<<<
@@ -21928,7 +21722,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
   __pyx_t_3 = __pyx_v_n;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":20
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":20
  *         rank = IntList(initial_len=n)
  *         for i from 0 <= i < n:
  *             rank.arr[sa.sa.arr[i]] = i             # <<<<<<<<<<<<<<
@@ -21938,7 +21732,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
     (__pyx_v_rank->arr[(__pyx_v_sa->sa->arr[__pyx_v_i])]) = __pyx_v_i;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":22
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":22
  *             rank.arr[sa.sa.arr[i]] = i
  * 
  *         h = 0             # <<<<<<<<<<<<<<
@@ -21947,7 +21741,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
  */
   __pyx_v_h = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":23
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":23
  * 
  *         h = 0
  *         for i from 0 <= i < n:             # <<<<<<<<<<<<<<
@@ -21957,7 +21751,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
   __pyx_t_3 = __pyx_v_n;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":24
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":24
  *         h = 0
  *         for i from 0 <= i < n:
  *             k = rank.arr[i]             # <<<<<<<<<<<<<<
@@ -21966,7 +21760,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
  */
     __pyx_v_k = (__pyx_v_rank->arr[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":25
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":25
  *         for i from 0 <= i < n:
  *             k = rank.arr[i]
  *             if k == 0:             # <<<<<<<<<<<<<<
@@ -21976,7 +21770,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
     __pyx_t_4 = (__pyx_v_k == 0);
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":26
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":26
  *             k = rank.arr[i]
  *             if k == 0:
  *                 self.lcp.arr[k] = -1             # <<<<<<<<<<<<<<
@@ -21988,7 +21782,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":28
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":28
  *                 self.lcp.arr[k] = -1
  *             else:
  *                 j = sa.sa.arr[k-1]             # <<<<<<<<<<<<<<
@@ -21997,7 +21791,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
  */
       __pyx_v_j = (__pyx_v_sa->sa->arr[(__pyx_v_k - 1)]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":29
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":29
  *             else:
  *                 j = sa.sa.arr[k-1]
  *                 while i+h < n and j+h < n and sa.darray.data.arr[i+h] == sa.darray.data.arr[j+h]:             # <<<<<<<<<<<<<<
@@ -22020,7 +21814,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
         }
         if (!__pyx_t_5) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":30
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":30
  *                 j = sa.sa.arr[k-1]
  *                 while i+h < n and j+h < n and sa.darray.data.arr[i+h] == sa.darray.data.arr[j+h]:
  *                     h = h+1             # <<<<<<<<<<<<<<
@@ -22030,7 +21824,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
         __pyx_v_h = (__pyx_v_h + 1);
       }
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":31
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":31
  *                 while i+h < n and j+h < n and sa.darray.data.arr[i+h] == sa.darray.data.arr[j+h]:
  *                     h = h+1
  *                 self.lcp.arr[k] = h             # <<<<<<<<<<<<<<
@@ -22041,7 +21835,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
     }
     __pyx_L7:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":32
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":32
  *                     h = h+1
  *                 self.lcp.arr[k] = h
  *             if h > 0:             # <<<<<<<<<<<<<<
@@ -22051,7 +21845,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
     __pyx_t_5 = (__pyx_v_h > 0);
     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":33
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":33
  *                 self.lcp.arr[k] = h
  *             if h > 0:
  *                 h = h-1             # <<<<<<<<<<<<<<
@@ -22064,7 +21858,7 @@ static int __pyx_pf_3_sa_3LCP___cinit__(struct __pyx_obj_3_sa_LCP *__pyx_v_self,
     __pyx_L10:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":34
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":34
  *             if h > 0:
  *                 h = h-1
  *         logger.info("LCP array completed")             # <<<<<<<<<<<<<<
@@ -22117,7 +21911,7 @@ static PyObject *__pyx_pw_3_sa_3LCP_3compute_stats(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":36
+/* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":36
  *         logger.info("LCP array completed")
  * 
  *     def compute_stats(self, int max_n):             # <<<<<<<<<<<<<<
@@ -22188,7 +21982,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":48
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":48
  *         cdef VEB veb
  * 
  *         N = self.sa.sa.len             # <<<<<<<<<<<<<<
@@ -22197,7 +21991,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
   __pyx_cur_scope->__pyx_v_N = __pyx_cur_scope->__pyx_v_self->sa->sa->len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":50
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":50
  *         N = self.sa.sa.len
  * 
  *         ngram_starts = []             # <<<<<<<<<<<<<<
@@ -22210,7 +22004,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
   __pyx_cur_scope->__pyx_v_ngram_starts = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":51
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":51
  * 
  *         ngram_starts = []
  *         for n from 0 <= n < max_n:             # <<<<<<<<<<<<<<
@@ -22220,7 +22014,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
   __pyx_t_2 = __pyx_cur_scope->__pyx_v_max_n;
   for (__pyx_cur_scope->__pyx_v_n = 0; __pyx_cur_scope->__pyx_v_n < __pyx_t_2; __pyx_cur_scope->__pyx_v_n++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":52
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":52
  *         ngram_starts = []
  *         for n from 0 <= n < max_n:
  *             ngram_starts.append(IntList(initial_len=N))             # <<<<<<<<<<<<<<
@@ -22240,7 +22034,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":54
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":54
  *             ngram_starts.append(IntList(initial_len=N))
  * 
  *         run_start = IntList(initial_len=max_n)             # <<<<<<<<<<<<<<
@@ -22260,7 +22054,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
   __pyx_cur_scope->__pyx_v_run_start = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":55
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":55
  * 
  *         run_start = IntList(initial_len=max_n)
  *         veb = VEB(N)             # <<<<<<<<<<<<<<
@@ -22281,7 +22075,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
   __pyx_cur_scope->__pyx_v_veb = ((struct __pyx_obj_3_sa_VEB *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":57
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":57
  *         veb = VEB(N)
  * 
  *         for i from 0 <= i < N:             # <<<<<<<<<<<<<<
@@ -22291,7 +22085,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
   __pyx_t_2 = __pyx_cur_scope->__pyx_v_N;
   for (__pyx_cur_scope->__pyx_v_i = 0; __pyx_cur_scope->__pyx_v_i < __pyx_t_2; __pyx_cur_scope->__pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":58
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":58
  * 
  *         for i from 0 <= i < N:
  *             h = self.lcp.arr[i]             # <<<<<<<<<<<<<<
@@ -22300,7 +22094,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
     __pyx_cur_scope->__pyx_v_h = (__pyx_cur_scope->__pyx_v_self->lcp->arr[__pyx_cur_scope->__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":59
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":59
  *         for i from 0 <= i < N:
  *             h = self.lcp.arr[i]
  *             if h < 0:             # <<<<<<<<<<<<<<
@@ -22310,7 +22104,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
     __pyx_t_5 = (__pyx_cur_scope->__pyx_v_h < 0);
     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":60
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":60
  *             h = self.lcp.arr[i]
  *             if h < 0:
  *                 h = 0             # <<<<<<<<<<<<<<
@@ -22322,7 +22116,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
     }
     __pyx_L8:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":61
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":61
  *             if h < 0:
  *                 h = 0
  *             for n from h <= n < max_n:             # <<<<<<<<<<<<<<
@@ -22332,7 +22126,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
     __pyx_t_6 = __pyx_cur_scope->__pyx_v_max_n;
     for (__pyx_cur_scope->__pyx_v_n = __pyx_cur_scope->__pyx_v_h; __pyx_cur_scope->__pyx_v_n < __pyx_t_6; __pyx_cur_scope->__pyx_v_n++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":62
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":62
  *                 h = 0
  *             for n from h <= n < max_n:
  *                 rs = run_start.arr[n]             # <<<<<<<<<<<<<<
@@ -22341,7 +22135,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
       __pyx_cur_scope->__pyx_v_rs = (__pyx_cur_scope->__pyx_v_run_start->arr[__pyx_cur_scope->__pyx_v_n]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":63
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":63
  *             for n from h <= n < max_n:
  *                 rs = run_start.arr[n]
  *                 run_start.arr[n] = i             # <<<<<<<<<<<<<<
@@ -22350,7 +22144,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
       (__pyx_cur_scope->__pyx_v_run_start->arr[__pyx_cur_scope->__pyx_v_n]) = __pyx_cur_scope->__pyx_v_i;
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":64
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":64
  *                 rs = run_start.arr[n]
  *                 run_start.arr[n] = i
  *                 freq = i - rs             # <<<<<<<<<<<<<<
@@ -22359,7 +22153,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
       __pyx_cur_scope->__pyx_v_freq = (__pyx_cur_scope->__pyx_v_i - __pyx_cur_scope->__pyx_v_rs);
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":65
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":65
  *                 run_start.arr[n] = i
  *                 freq = i - rs
  *                 if freq > 1000: # arbitrary, but see note below             # <<<<<<<<<<<<<<
@@ -22369,7 +22163,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
       __pyx_t_5 = (__pyx_cur_scope->__pyx_v_freq > 1000);
       if (__pyx_t_5) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":66
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":66
  *                 freq = i - rs
  *                 if freq > 1000: # arbitrary, but see note below
  *                     veb._insert(freq)             # <<<<<<<<<<<<<<
@@ -22378,7 +22172,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
         ((struct __pyx_vtabstruct_3_sa_VEB *)__pyx_cur_scope->__pyx_v_veb->__pyx_vtab)->_insert(__pyx_cur_scope->__pyx_v_veb, __pyx_cur_scope->__pyx_v_freq);
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":67
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":67
  *                 if freq > 1000: # arbitrary, but see note below
  *                     veb._insert(freq)
  *                     ngram_start = ngram_starts[n]             # <<<<<<<<<<<<<<
@@ -22394,7 +22188,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
         __pyx_cur_scope->__pyx_v_ngram_start = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
         __pyx_t_1 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":68
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":68
  *                     veb._insert(freq)
  *                     ngram_start = ngram_starts[n]
  *                     while ngram_start.arr[freq] > 0:             # <<<<<<<<<<<<<<
@@ -22405,7 +22199,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
           __pyx_t_5 = ((__pyx_cur_scope->__pyx_v_ngram_start->arr[__pyx_cur_scope->__pyx_v_freq]) > 0);
           if (!__pyx_t_5) break;
 
-          /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":69
+          /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":69
  *                     ngram_start = ngram_starts[n]
  *                     while ngram_start.arr[freq] > 0:
  *                         freq = freq + 1 # cheating a bit, should be ok for sparse histogram             # <<<<<<<<<<<<<<
@@ -22415,7 +22209,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
           __pyx_cur_scope->__pyx_v_freq = (__pyx_cur_scope->__pyx_v_freq + 1);
         }
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":70
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":70
  *                     while ngram_start.arr[freq] > 0:
  *                         freq = freq + 1 # cheating a bit, should be ok for sparse histogram
  *                     ngram_start.arr[freq] = rs             # <<<<<<<<<<<<<<
@@ -22429,7 +22223,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
     }
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":71
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":71
  *                         freq = freq + 1 # cheating a bit, should be ok for sparse histogram
  *                     ngram_start.arr[freq] = rs
  *         i = veb.veb.min_val             # <<<<<<<<<<<<<<
@@ -22438,7 +22232,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
   __pyx_cur_scope->__pyx_v_i = __pyx_cur_scope->__pyx_v_veb->veb->min_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":72
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":72
  *                     ngram_start.arr[freq] = rs
  *         i = veb.veb.min_val
  *         while i != -1:             # <<<<<<<<<<<<<<
@@ -22449,7 +22243,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
     __pyx_t_5 = (__pyx_cur_scope->__pyx_v_i != -1);
     if (!__pyx_t_5) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":73
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":73
  *         i = veb.veb.min_val
  *         while i != -1:
  *             ii = veb._findsucc(i)             # <<<<<<<<<<<<<<
@@ -22458,7 +22252,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
     __pyx_cur_scope->__pyx_v_ii = ((struct __pyx_vtabstruct_3_sa_VEB *)__pyx_cur_scope->__pyx_v_veb->__pyx_vtab)->_findsucc(__pyx_cur_scope->__pyx_v_veb, __pyx_cur_scope->__pyx_v_i);
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":74
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":74
  *         while i != -1:
  *             ii = veb._findsucc(i)
  *             for n from 0 <= n < max_n:             # <<<<<<<<<<<<<<
@@ -22468,7 +22262,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
     __pyx_t_2 = __pyx_cur_scope->__pyx_v_max_n;
     for (__pyx_cur_scope->__pyx_v_n = 0; __pyx_cur_scope->__pyx_v_n < __pyx_t_2; __pyx_cur_scope->__pyx_v_n++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":75
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":75
  *             ii = veb._findsucc(i)
  *             for n from 0 <= n < max_n:
  *                 ngram_start = ngram_starts[n]             # <<<<<<<<<<<<<<
@@ -22484,7 +22278,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
       __pyx_cur_scope->__pyx_v_ngram_start = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
       __pyx_t_1 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":76
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":76
  *             for n from 0 <= n < max_n:
  *                 ngram_start = ngram_starts[n]
  *                 iii = i             # <<<<<<<<<<<<<<
@@ -22493,7 +22287,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
       __pyx_cur_scope->__pyx_v_iii = __pyx_cur_scope->__pyx_v_i;
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":77
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":77
  *                 ngram_start = ngram_starts[n]
  *                 iii = i
  *                 rs = ngram_start.arr[iii]             # <<<<<<<<<<<<<<
@@ -22502,7 +22296,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
       __pyx_cur_scope->__pyx_v_rs = (__pyx_cur_scope->__pyx_v_ngram_start->arr[__pyx_cur_scope->__pyx_v_iii]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":78
+      /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":78
  *                 iii = i
  *                 rs = ngram_start.arr[iii]
  *                 while (ii==-1 or iii < ii) and rs != 0:             # <<<<<<<<<<<<<<
@@ -22525,7 +22319,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
         }
         if (!__pyx_t_7) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":79
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":79
  *                 rs = ngram_start.arr[iii]
  *                 while (ii==-1 or iii < ii) and rs != 0:
  *                     j = self.sa.sa.arr[rs]             # <<<<<<<<<<<<<<
@@ -22534,7 +22328,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
         __pyx_cur_scope->__pyx_v_j = (__pyx_cur_scope->__pyx_v_self->sa->sa->arr[__pyx_cur_scope->__pyx_v_rs]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":80
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":80
  *                 while (ii==-1 or iii < ii) and rs != 0:
  *                     j = self.sa.sa.arr[rs]
  *                     valid = 1             # <<<<<<<<<<<<<<
@@ -22543,7 +22337,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
         __pyx_cur_scope->__pyx_v_valid = 1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":81
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":81
  *                     j = self.sa.sa.arr[rs]
  *                     valid = 1
  *                     for k from 0 <= k < n+1:             # <<<<<<<<<<<<<<
@@ -22553,7 +22347,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
         __pyx_t_9 = (__pyx_cur_scope->__pyx_v_n + 1);
         for (__pyx_cur_scope->__pyx_v_k = 0; __pyx_cur_scope->__pyx_v_k < __pyx_t_9; __pyx_cur_scope->__pyx_v_k++) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":82
+          /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":82
  *                     valid = 1
  *                     for k from 0 <= k < n+1:
  *                         if self.sa.darray.data.arr[j+k] < 2:             # <<<<<<<<<<<<<<
@@ -22563,7 +22357,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
           __pyx_t_7 = ((__pyx_cur_scope->__pyx_v_self->sa->darray->data->arr[(__pyx_cur_scope->__pyx_v_j + __pyx_cur_scope->__pyx_v_k)]) < 2);
           if (__pyx_t_7) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":83
+            /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":83
  *                     for k from 0 <= k < n+1:
  *                         if self.sa.darray.data.arr[j+k] < 2:
  *                             valid = 0             # <<<<<<<<<<<<<<
@@ -22576,7 +22370,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
           __pyx_L22:;
         }
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":84
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":84
  *                         if self.sa.darray.data.arr[j+k] < 2:
  *                             valid = 0
  *                     if valid:             # <<<<<<<<<<<<<<
@@ -22585,7 +22379,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
         if (__pyx_cur_scope->__pyx_v_valid) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":85
+          /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":85
  *                             valid = 0
  *                     if valid:
  *                         ngram = tuple([self.sa.darray.data.arr[j+k] for k in range(n+1)])             # <<<<<<<<<<<<<<
@@ -22599,7 +22393,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
             __pyx_cur_scope->__pyx_v_k = __pyx_t_6;
             __pyx_t_3 = PyInt_FromLong((__pyx_cur_scope->__pyx_v_self->sa->darray->data->arr[(__pyx_cur_scope->__pyx_v_j + __pyx_cur_scope->__pyx_v_k)])); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_3);
-            if (unlikely(__Pyx_PyList_Append(__pyx_t_1, (PyObject*)__pyx_t_3))) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            if (unlikely(PyList_Append(__pyx_t_1, (PyObject*)__pyx_t_3))) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
           }
           __pyx_t_3 = ((PyObject *)PyList_AsTuple(__pyx_t_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -22611,7 +22405,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
           __pyx_cur_scope->__pyx_v_ngram = __pyx_t_3;
           __pyx_t_3 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":86
+          /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":86
  *                     if valid:
  *                         ngram = tuple([self.sa.darray.data.arr[j+k] for k in range(n+1)])
  *                         yield i, n+1, ngram             # <<<<<<<<<<<<<<
@@ -22648,7 +22442,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
         }
         __pyx_L23:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":87
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":87
  *                         ngram = tuple([self.sa.darray.data.arr[j+k] for k in range(n+1)])
  *                         yield i, n+1, ngram
  *                     iii = iii + 1             # <<<<<<<<<<<<<<
@@ -22657,7 +22451,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
  */
         __pyx_cur_scope->__pyx_v_iii = (__pyx_cur_scope->__pyx_v_iii + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":88
+        /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":88
  *                         yield i, n+1, ngram
  *                     iii = iii + 1
  *                     rs = ngram_start.arr[iii]             # <<<<<<<<<<<<<<
@@ -22667,7 +22461,7 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
       }
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":89
+    /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":89
  *                     iii = iii + 1
  *                     rs = ngram_start.arr[iii]
  *             i = ii             # <<<<<<<<<<<<<<
@@ -22684,7 +22478,6 @@ static PyObject *__pyx_gb_3_sa_3LCP_4generator1(__pyx_GeneratorObject *__pyx_gen
   __pyx_L0:;
   __Pyx_XDECREF(__pyx_r);
   __pyx_generator->resume_label = -1;
-  __Pyx_Generator_clear((PyObject*)__pyx_generator);
   __Pyx_RefNannyFinishContext();
   return NULL;
 }
@@ -22703,7 +22496,7 @@ static int __pyx_pw_3_sa_8Alphabet_1__cinit__(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":12
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":12
  *     cdef dict id2sym
  * 
  *     def __cinit__(self):             # <<<<<<<<<<<<<<
@@ -22720,7 +22513,7 @@ static int __pyx_pf_3_sa_8Alphabet___cinit__(struct __pyx_obj_3_sa_Alphabet *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":13
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":13
  * 
  *     def __cinit__(self):
  *         self.terminals = StringMap()             # <<<<<<<<<<<<<<
@@ -22735,7 +22528,7 @@ static int __pyx_pf_3_sa_8Alphabet___cinit__(struct __pyx_obj_3_sa_Alphabet *__p
   __pyx_v_self->terminals = ((struct __pyx_obj_3_sa_StringMap *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":14
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":14
  *     def __cinit__(self):
  *         self.terminals = StringMap()
  *         self.nonterminals = StringMap()             # <<<<<<<<<<<<<<
@@ -22750,7 +22543,7 @@ static int __pyx_pf_3_sa_8Alphabet___cinit__(struct __pyx_obj_3_sa_Alphabet *__p
   __pyx_v_self->nonterminals = ((struct __pyx_obj_3_sa_StringMap *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":15
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":15
  *         self.terminals = StringMap()
  *         self.nonterminals = StringMap()
  *         self.id2sym = {}             # <<<<<<<<<<<<<<
@@ -22765,7 +22558,7 @@ static int __pyx_pf_3_sa_8Alphabet___cinit__(struct __pyx_obj_3_sa_Alphabet *__p
   __pyx_v_self->id2sym = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":16
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":16
  *         self.nonterminals = StringMap()
  *         self.id2sym = {}
  *         self.first_nonterminal = -1             # <<<<<<<<<<<<<<
@@ -22794,7 +22587,7 @@ static void __pyx_pw_3_sa_8Alphabet_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":18
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":18
  *         self.first_nonterminal = -1
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -22809,7 +22602,7 @@ static void __pyx_pf_3_sa_8Alphabet_2__dealloc__(CYTHON_UNUSED struct __pyx_obj_
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":21
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":21
  *         pass
  * 
  *     cdef int isvar(self, int sym):             # <<<<<<<<<<<<<<
@@ -22822,7 +22615,7 @@ static int __pyx_f_3_sa_8Alphabet_isvar(CYTHON_UNUSED struct __pyx_obj_3_sa_Alph
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("isvar", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":22
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":22
  * 
  *     cdef int isvar(self, int sym):
  *         return sym < 0             # <<<<<<<<<<<<<<
@@ -22838,7 +22631,7 @@ static int __pyx_f_3_sa_8Alphabet_isvar(CYTHON_UNUSED struct __pyx_obj_3_sa_Alph
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":24
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":24
  *         return sym < 0
  * 
  *     cdef int isword(self, int sym):             # <<<<<<<<<<<<<<
@@ -22851,7 +22644,7 @@ static int __pyx_f_3_sa_8Alphabet_isword(CYTHON_UNUSED struct __pyx_obj_3_sa_Alp
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("isword", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":25
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":25
  * 
  *     cdef int isword(self, int sym):
  *         return sym >= 0             # <<<<<<<<<<<<<<
@@ -22867,7 +22660,7 @@ static int __pyx_f_3_sa_8Alphabet_isword(CYTHON_UNUSED struct __pyx_obj_3_sa_Alp
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":27
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":27
  *         return sym >= 0
  * 
  *     cdef int getindex(self, int sym):             # <<<<<<<<<<<<<<
@@ -22880,7 +22673,7 @@ static int __pyx_f_3_sa_8Alphabet_getindex(CYTHON_UNUSED struct __pyx_obj_3_sa_A
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("getindex", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":28
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":28
  * 
  *     cdef int getindex(self, int sym):
  *         return -sym & INDEX_MASK             # <<<<<<<<<<<<<<
@@ -22896,7 +22689,7 @@ static int __pyx_f_3_sa_8Alphabet_getindex(CYTHON_UNUSED struct __pyx_obj_3_sa_A
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":30
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":30
  *         return -sym & INDEX_MASK
  * 
  *     cdef int setindex(self, int sym, int ind):             # <<<<<<<<<<<<<<
@@ -22909,7 +22702,7 @@ static int __pyx_f_3_sa_8Alphabet_setindex(CYTHON_UNUSED struct __pyx_obj_3_sa_A
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("setindex", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":31
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":31
  * 
  *     cdef int setindex(self, int sym, int ind):
  *         return -(-sym & ~INDEX_MASK | ind)             # <<<<<<<<<<<<<<
@@ -22925,7 +22718,7 @@ static int __pyx_f_3_sa_8Alphabet_setindex(CYTHON_UNUSED struct __pyx_obj_3_sa_A
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":33
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":33
  *         return -(-sym & ~INDEX_MASK | ind)
  * 
  *     cdef int clearindex(self, int sym):             # <<<<<<<<<<<<<<
@@ -22938,7 +22731,7 @@ static int __pyx_f_3_sa_8Alphabet_clearindex(CYTHON_UNUSED struct __pyx_obj_3_sa
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("clearindex", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":34
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":34
  * 
  *     cdef int clearindex(self, int sym):
  *         return -(-sym& ~INDEX_MASK)             # <<<<<<<<<<<<<<
@@ -22954,7 +22747,7 @@ static int __pyx_f_3_sa_8Alphabet_clearindex(CYTHON_UNUSED struct __pyx_obj_3_sa
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":36
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":36
  *         return -(-sym& ~INDEX_MASK)
  * 
  *     cdef int match(self, int sym1, int sym2):             # <<<<<<<<<<<<<<
@@ -22967,7 +22760,7 @@ static int __pyx_f_3_sa_8Alphabet_match(struct __pyx_obj_3_sa_Alphabet *__pyx_v_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("match", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":37
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":37
  * 
  *     cdef int match(self, int sym1, int sym2):
  *         return self.clearindex(sym1) == self.clearindex(sym2);             # <<<<<<<<<<<<<<
@@ -22983,7 +22776,7 @@ static int __pyx_f_3_sa_8Alphabet_match(struct __pyx_obj_3_sa_Alphabet *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":39
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":39
  *         return self.clearindex(sym1) == self.clearindex(sym2);
  * 
  *     cdef char* tocat(self, int sym):             # <<<<<<<<<<<<<<
@@ -22996,7 +22789,7 @@ static char *__pyx_f_3_sa_8Alphabet_tocat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("tocat", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":40
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":40
  * 
  *     cdef char* tocat(self, int sym):
  *         return self.nonterminals.word((-sym >> INDEX_SHIFT)-1)             # <<<<<<<<<<<<<<
@@ -23012,7 +22805,7 @@ static char *__pyx_f_3_sa_8Alphabet_tocat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":42
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":42
  *         return self.nonterminals.word((-sym >> INDEX_SHIFT)-1)
  * 
  *     cdef int fromcat(self, char *s):             # <<<<<<<<<<<<<<
@@ -23027,7 +22820,7 @@ static int __pyx_f_3_sa_8Alphabet_fromcat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("fromcat", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":44
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":44
  *     cdef int fromcat(self, char *s):
  *         cdef int i
  *         i = self.nonterminals.index(s)             # <<<<<<<<<<<<<<
@@ -23036,7 +22829,7 @@ static int __pyx_f_3_sa_8Alphabet_fromcat(struct __pyx_obj_3_sa_Alphabet *__pyx_
  */
   __pyx_v_i = ((struct __pyx_vtabstruct_3_sa_StringMap *)__pyx_v_self->nonterminals->__pyx_vtab)->index(__pyx_v_self->nonterminals, __pyx_v_s);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":45
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":45
  *         cdef int i
  *         i = self.nonterminals.index(s)
  *         if self.first_nonterminal == -1:             # <<<<<<<<<<<<<<
@@ -23046,7 +22839,7 @@ static int __pyx_f_3_sa_8Alphabet_fromcat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   __pyx_t_1 = (__pyx_v_self->first_nonterminal == -1);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":46
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":46
  *         i = self.nonterminals.index(s)
  *         if self.first_nonterminal == -1:
  *             self.first_nonterminal = i             # <<<<<<<<<<<<<<
@@ -23058,7 +22851,7 @@ static int __pyx_f_3_sa_8Alphabet_fromcat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":47
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":47
  *         if self.first_nonterminal == -1:
  *             self.first_nonterminal = i
  *         if i > self.last_nonterminal:             # <<<<<<<<<<<<<<
@@ -23068,7 +22861,7 @@ static int __pyx_f_3_sa_8Alphabet_fromcat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   __pyx_t_1 = (__pyx_v_i > __pyx_v_self->last_nonterminal);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":48
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":48
  *             self.first_nonterminal = i
  *         if i > self.last_nonterminal:
  *             self.last_nonterminal = i             # <<<<<<<<<<<<<<
@@ -23080,7 +22873,7 @@ static int __pyx_f_3_sa_8Alphabet_fromcat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":49
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":49
  *         if i > self.last_nonterminal:
  *             self.last_nonterminal = i
  *         return -(i+1 << INDEX_SHIFT)             # <<<<<<<<<<<<<<
@@ -23096,7 +22889,7 @@ static int __pyx_f_3_sa_8Alphabet_fromcat(struct __pyx_obj_3_sa_Alphabet *__pyx_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":51
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":51
  *         return -(i+1 << INDEX_SHIFT)
  * 
  *     cdef char* tostring(self, int sym):             # <<<<<<<<<<<<<<
@@ -23119,7 +22912,7 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("tostring", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":53
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":53
  *     cdef char* tostring(self, int sym):
  *         cdef int ind
  *         if self.isvar(sym):             # <<<<<<<<<<<<<<
@@ -23129,7 +22922,7 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
   __pyx_t_1 = ((struct __pyx_vtabstruct_3_sa_Alphabet *)__pyx_v_self->__pyx_vtab)->isvar(__pyx_v_self, __pyx_v_sym);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":54
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":54
  *         cdef int ind
  *         if self.isvar(sym):
  *             if sym in self.id2sym:             # <<<<<<<<<<<<<<
@@ -23139,24 +22932,19 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
     __pyx_t_2 = PyInt_FromLong(__pyx_v_sym); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_2);
     if (unlikely(((PyObject *)__pyx_v_self->id2sym) == Py_None)) {
-      PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
-      {__pyx_filename = __pyx_f[10]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); {__pyx_filename = __pyx_f[10]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 
     }
-    __pyx_t_3 = (__Pyx_PyDict_Contains(__pyx_t_2, ((PyObject *)__pyx_v_self->id2sym), Py_EQ)); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_3 = ((PyDict_Contains(((PyObject *)__pyx_v_self->id2sym), __pyx_t_2))); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":55
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":55
  *         if self.isvar(sym):
  *             if sym in self.id2sym:
  *                 return self.id2sym[sym]             # <<<<<<<<<<<<<<
  *             ind = self.getindex(sym)
  *             if ind > 0:
  */
-      if (unlikely(((PyObject *)__pyx_v_self->id2sym) == Py_None)) {
-        PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
-        {__pyx_filename = __pyx_f[10]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      }
       __pyx_t_2 = __Pyx_GetItemInt(((PyObject *)__pyx_v_self->id2sym), __pyx_v_sym, sizeof(int), PyInt_FromLong); if (!__pyx_t_2) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
       __pyx_t_4 = PyBytes_AsString(__pyx_t_2); if (unlikely((!__pyx_t_4) && PyErr_Occurred())) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 55; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -23167,7 +22955,7 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
     }
     __pyx_L4:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":56
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":56
  *             if sym in self.id2sym:
  *                 return self.id2sym[sym]
  *             ind = self.getindex(sym)             # <<<<<<<<<<<<<<
@@ -23176,7 +22964,7 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
  */
     __pyx_v_ind = ((struct __pyx_vtabstruct_3_sa_Alphabet *)__pyx_v_self->__pyx_vtab)->getindex(__pyx_v_self, __pyx_v_sym);
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":57
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":57
  *                 return self.id2sym[sym]
  *             ind = self.getindex(sym)
  *             if ind > 0:             # <<<<<<<<<<<<<<
@@ -23186,7 +22974,7 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
     __pyx_t_3 = (__pyx_v_ind > 0);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":58
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":58
  *             ind = self.getindex(sym)
  *             if ind > 0:
  *                 self.id2sym[sym] = "[%s,%d]" % (self.tocat(sym), ind)             # <<<<<<<<<<<<<<
@@ -23208,17 +22996,13 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
       __pyx_t_5 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_64), ((PyObject *)__pyx_t_6)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(((PyObject *)__pyx_t_5));
       __Pyx_DECREF(((PyObject *)__pyx_t_6)); __pyx_t_6 = 0;
-      if (unlikely(((PyObject *)__pyx_v_self->id2sym) == Py_None)) {
-        PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
-        {__pyx_filename = __pyx_f[10]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      }
       if (__Pyx_SetItemInt(((PyObject *)__pyx_v_self->id2sym), __pyx_v_sym, ((PyObject *)__pyx_t_5), sizeof(int), PyInt_FromLong) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 58; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(((PyObject *)__pyx_t_5)); __pyx_t_5 = 0;
       goto __pyx_L5;
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":60
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":60
  *                 self.id2sym[sym] = "[%s,%d]" % (self.tocat(sym), ind)
  *             else:
  *                 self.id2sym[sym] = "[%s]" % self.tocat(sym)             # <<<<<<<<<<<<<<
@@ -23230,26 +23014,18 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
       __pyx_t_6 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_65), ((PyObject *)__pyx_t_5)); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(((PyObject *)__pyx_t_6));
       __Pyx_DECREF(((PyObject *)__pyx_t_5)); __pyx_t_5 = 0;
-      if (unlikely(((PyObject *)__pyx_v_self->id2sym) == Py_None)) {
-        PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
-        {__pyx_filename = __pyx_f[10]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      }
       if (__Pyx_SetItemInt(((PyObject *)__pyx_v_self->id2sym), __pyx_v_sym, ((PyObject *)__pyx_t_6), sizeof(int), PyInt_FromLong) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(((PyObject *)__pyx_t_6)); __pyx_t_6 = 0;
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":61
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":61
  *             else:
  *                 self.id2sym[sym] = "[%s]" % self.tocat(sym)
  *             return self.id2sym[sym]             # <<<<<<<<<<<<<<
  *         else:
  *             return self.terminals.word(sym)
  */
-    if (unlikely(((PyObject *)__pyx_v_self->id2sym) == Py_None)) {
-      PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
-      {__pyx_filename = __pyx_f[10]; __pyx_lineno = 61; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-    }
     __pyx_t_6 = __Pyx_GetItemInt(((PyObject *)__pyx_v_self->id2sym), __pyx_v_sym, sizeof(int), PyInt_FromLong); if (!__pyx_t_6) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 61; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_6);
     __pyx_t_4 = PyBytes_AsString(__pyx_t_6); if (unlikely((!__pyx_t_4) && PyErr_Occurred())) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 61; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -23260,7 +23036,7 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":63
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":63
  *             return self.id2sym[sym]
  *         else:
  *             return self.terminals.word(sym)             # <<<<<<<<<<<<<<
@@ -23285,7 +23061,7 @@ static char *__pyx_f_3_sa_8Alphabet_tostring(struct __pyx_obj_3_sa_Alphabet *__p
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":65
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":65
  *             return self.terminals.word(sym)
  * 
  *     cdef int fromstring(self, char *s, bint terminal):             # <<<<<<<<<<<<<<
@@ -23313,7 +23089,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("fromstring", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":69
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":69
  *         cdef char *comma
  *         cdef int n
  *         n = strlen(s)             # <<<<<<<<<<<<<<
@@ -23322,7 +23098,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
  */
   __pyx_v_n = strlen(__pyx_v_s);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":71
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":71
  *         n = strlen(s)
  *         cdef char *sep
  *         sep = strstr(s,"_SEP_")             # <<<<<<<<<<<<<<
@@ -23331,7 +23107,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
  */
   __pyx_v_sep = strstr(__pyx_v_s, __pyx_k___SEP_);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":72
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":72
  *         cdef char *sep
  *         sep = strstr(s,"_SEP_")
  *         if n >= 3 and s[0] == c'[' and s[n-1] == c']' and sep == NULL:             # <<<<<<<<<<<<<<
@@ -23359,7 +23135,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
   }
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":73
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":73
  *         sep = strstr(s,"_SEP_")
  *         if n >= 3 and s[0] == c'[' and s[n-1] == c']' and sep == NULL:
  *             if terminal:             # <<<<<<<<<<<<<<
@@ -23368,7 +23144,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
  */
     if (__pyx_v_terminal) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":74
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":74
  *         if n >= 3 and s[0] == c'[' and s[n-1] == c']' and sep == NULL:
  *             if terminal:
  *                 s1 = "\\"+s             # <<<<<<<<<<<<<<
@@ -23383,7 +23159,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
       __pyx_v_s1 = __pyx_t_7;
       __pyx_t_7 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":75
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":75
  *             if terminal:
  *                 s1 = "\\"+s
  *                 return self.terminals.index(s1)             # <<<<<<<<<<<<<<
@@ -23397,7 +23173,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
     }
     __pyx_L4:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":76
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":76
  *                 s1 = "\\"+s
  *                 return self.terminals.index(s1)
  *             s[n-1] = c'\0'             # <<<<<<<<<<<<<<
@@ -23406,7 +23182,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
  */
     (__pyx_v_s[(__pyx_v_n - 1)]) = '\x00';
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":77
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":77
  *                 return self.terminals.index(s1)
  *             s[n-1] = c'\0'
  *             s = s + 1             # <<<<<<<<<<<<<<
@@ -23415,7 +23191,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
  */
     __pyx_v_s = (__pyx_v_s + 1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":78
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":78
  *             s[n-1] = c'\0'
  *             s = s + 1
  *             comma = strrchr(s, c',')             # <<<<<<<<<<<<<<
@@ -23424,7 +23200,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
  */
     __pyx_v_comma = strrchr(__pyx_v_s, ',');
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":79
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":79
  *             s = s + 1
  *             comma = strrchr(s, c',')
  *             if comma != NULL:             # <<<<<<<<<<<<<<
@@ -23434,7 +23210,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
     __pyx_t_2 = (__pyx_v_comma != NULL);
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":80
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":80
  *             comma = strrchr(s, c',')
  *             if comma != NULL:
  *                 comma[0] = c'\0'             # <<<<<<<<<<<<<<
@@ -23443,7 +23219,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
  */
       (__pyx_v_comma[0]) = '\x00';
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":81
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":81
  *             if comma != NULL:
  *                 comma[0] = c'\0'
  *                 return self.setindex(self.fromcat(s), strtol(comma+1, NULL, 10))             # <<<<<<<<<<<<<<
@@ -23456,7 +23232,7 @@ static int __pyx_f_3_sa_8Alphabet_fromstring(struct __pyx_obj_3_sa_Alphabet *__p
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":83
+      /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":83
  *                 return self.setindex(self.fromcat(s), strtol(comma+1, NULL, 10))
  *             else:
  *                 return self.fromcat(s)             # <<<<<<<<<<<<<<
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   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":85
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":85
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":8
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   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":89
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":90
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":92
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":95
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":96
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":98
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":99
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":99
  * 
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   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":101
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":102
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":104
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":105
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  * cdef int sym_fromstring(char* string, bint terminal):
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 /* Python wrapper */
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+static PyObject *__pyx_pw_3_sa_5isvar(PyObject *__pyx_self, PyObject *__pyx_v_sym); /*proto*/
+static PyMethodDef __pyx_mdef_3_sa_5isvar = {__Pyx_NAMESTR("isvar"), (PyCFunction)__pyx_pw_3_sa_5isvar, METH_O, __Pyx_DOCSTR(0)};
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-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":107
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-static PyObject *__pyx_pf_3_sa_2isvar(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_sym) {
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":108
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-static PyObject *__pyx_pw_3_sa_5make_lattice(PyObject *__pyx_self, PyObject *__pyx_v_words) {
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-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":111
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":111
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-      #endif
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-      #endif
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 static PyObject *__pyx_gb_3_sa_12make_lattice_5generator8(__pyx_GeneratorObject *__pyx_generator, PyObject *__pyx_sent_value); /* proto */
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":112
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":112
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-      #endif
+      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
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-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":110
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+static PyObject *__pyx_pf_3_sa_6make_lattice(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_words) {
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   __Pyx_GIVEREF(__pyx_cur_scope->__pyx_v_words);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":111
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":111
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":112
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":112
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@@ -24177,19 +23937,20 @@ static PyObject *__pyx_pf_3_sa_4make_lattice(CYTHON_UNUSED PyObject *__pyx_self,
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-static PyObject *__pyx_pw_3_sa_7decode_lattice(PyObject *__pyx_self, PyObject *__pyx_v_lattice) {
+static PyObject *__pyx_pw_3_sa_9decode_lattice(PyObject *__pyx_self, PyObject *__pyx_v_lattice); /*proto*/
+static PyMethodDef __pyx_mdef_3_sa_9decode_lattice = {__Pyx_NAMESTR("decode_lattice"), (PyCFunction)__pyx_pw_3_sa_9decode_lattice, METH_O, __Pyx_DOCSTR(0)};
+static PyObject *__pyx_pw_3_sa_9decode_lattice(PyObject *__pyx_self, PyObject *__pyx_v_lattice) {
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+  __pyx_self = __pyx_self;
+  __pyx_r = __pyx_pf_3_sa_8decode_lattice(__pyx_self, ((PyObject *)__pyx_v_lattice));
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-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":115
+/* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":115
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":116
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":116
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   }
   for (;;) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":115
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":115
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-      #endif
+      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
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-      #endif
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-      #if CYTHON_COMPILING_IN_CPYTHON
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+          if (PyTuple_GET_SIZE(sequence) > 3) __Pyx_RaiseTooManyValuesError(3);
+          else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+          {__pyx_filename = __pyx_f[10]; __pyx_lineno = 115; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        }
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+        if (unlikely(PyList_GET_SIZE(sequence) != 3)) {
+          if (PyList_GET_SIZE(sequence) > 3) __Pyx_RaiseTooManyValuesError(3);
+          else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+          {__pyx_filename = __pyx_f[10]; __pyx_lineno = 115; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    {
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-      if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
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-    /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":116
+    /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":116
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-        #endif
+        __pyx_t_7 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_10); __Pyx_INCREF(__pyx_t_7); __pyx_t_10++;
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-        #endif
+        __pyx_t_7 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_10); __Pyx_INCREF(__pyx_t_7); __pyx_t_10++;
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-          #endif
+          __pyx_t_6 = PyList_GET_ITEM(__pyx_t_7, __pyx_t_12); __Pyx_INCREF(__pyx_t_6); __pyx_t_12++;
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-        /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":115
+        /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":115
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":115
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+static PyObject *__pyx_pw_3_sa_11decode_sentence(PyObject *__pyx_self, PyObject *__pyx_v_lattice); /*proto*/
+static PyMethodDef __pyx_mdef_3_sa_11decode_sentence = {__Pyx_NAMESTR("decode_sentence"), (PyCFunction)__pyx_pw_3_sa_11decode_sentence, METH_O, __Pyx_DOCSTR(0)};
+static PyObject *__pyx_pw_3_sa_11decode_sentence(PyObject *__pyx_self, PyObject *__pyx_v_lattice) {
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-  __pyx_r = __pyx_pf_3_sa_8decode_sentence(__pyx_self, ((PyObject *)__pyx_v_lattice));
+  __pyx_self = __pyx_self;
+  __pyx_r = __pyx_pf_3_sa_10decode_sentence(__pyx_self, ((PyObject *)__pyx_v_lattice));
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 static PyObject *__pyx_gb_3_sa_15decode_sentence_2generator10(__pyx_GeneratorObject *__pyx_generator, PyObject *__pyx_sent_value); /* proto */
 
-/* "/home/m/workspace/cdec/python/src/sa/sym.pxi":119
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@@ -25351,7 +25041,7 @@ static PyObject *__pyx_pf_3_sa_12decode_words(CYTHON_UNUSED PyObject *__pyx_self
   __Pyx_INCREF(__pyx_cur_scope->__pyx_v_syms);
   __Pyx_GIVEREF(__pyx_cur_scope->__pyx_v_syms);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":125
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":125
  * 
  * def decode_words(syms):
  *     return tuple(sym_tostring(sym) for sym in syms)             # <<<<<<<<<<<<<<
@@ -25389,11 +25079,11 @@ static PyObject *__pyx_pf_3_sa_12decode_words(CYTHON_UNUSED PyObject *__pyx_self
 static int __pyx_pw_3_sa_6Phrase_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
 static int __pyx_pw_3_sa_6Phrase_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   PyObject *__pyx_v_words = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__words,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__words,0};
     PyObject* values[1] = {0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -25406,7 +25096,8 @@ static int __pyx_pw_3_sa_6Phrase_1__cinit__(PyObject *__pyx_v_self, PyObject *__
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__words)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__words);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
       }
       if (unlikely(kw_args > 0)) {
@@ -25432,7 +25123,7 @@ static int __pyx_pw_3_sa_6Phrase_1__cinit__(PyObject *__pyx_v_self, PyObject *__
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":6
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":6
  * cdef class Phrase:
  * 
  *     def __cinit__(self, words):             # <<<<<<<<<<<<<<
@@ -25456,7 +25147,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":8
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":8
  *     def __cinit__(self, words):
  *         cdef int i, j, n, n_vars
  *         n_vars = 0             # <<<<<<<<<<<<<<
@@ -25465,7 +25156,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
  */
   __pyx_v_n_vars = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":9
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":9
  *         cdef int i, j, n, n_vars
  *         n_vars = 0
  *         n = len(words)             # <<<<<<<<<<<<<<
@@ -25475,7 +25166,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   __pyx_t_1 = PyObject_Length(__pyx_v_words); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_n = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":10
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":10
  *         n_vars = 0
  *         n = len(words)
  *         self.syms = <int *>malloc(n*sizeof(int))             # <<<<<<<<<<<<<<
@@ -25484,7 +25175,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
  */
   __pyx_v_self->syms = ((int *)malloc((__pyx_v_n * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":11
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":11
  *         n = len(words)
  *         self.syms = <int *>malloc(n*sizeof(int))
  *         for i from 0 <= i < n:             # <<<<<<<<<<<<<<
@@ -25494,7 +25185,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   __pyx_t_2 = __pyx_v_n;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":12
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":12
  *         self.syms = <int *>malloc(n*sizeof(int))
  *         for i from 0 <= i < n:
  *             self.syms[i] = words[i]             # <<<<<<<<<<<<<<
@@ -25507,7 +25198,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
     (__pyx_v_self->syms[__pyx_v_i]) = __pyx_t_4;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":13
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":13
  *         for i from 0 <= i < n:
  *             self.syms[i] = words[i]
  *             if sym_isvar(self.syms[i]):             # <<<<<<<<<<<<<<
@@ -25517,7 +25208,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     __pyx_t_4 = __pyx_f_3_sa_sym_isvar((__pyx_v_self->syms[__pyx_v_i]));
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":14
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":14
  *             self.syms[i] = words[i]
  *             if sym_isvar(self.syms[i]):
  *                 n_vars += 1             # <<<<<<<<<<<<<<
@@ -25530,7 +25221,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":15
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":15
  *             if sym_isvar(self.syms[i]):
  *                 n_vars += 1
  *         self.n = n             # <<<<<<<<<<<<<<
@@ -25539,7 +25230,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
  */
   __pyx_v_self->n = __pyx_v_n;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":16
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":16
  *                 n_vars += 1
  *         self.n = n
  *         self.n_vars = n_vars             # <<<<<<<<<<<<<<
@@ -25548,7 +25239,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
  */
   __pyx_v_self->n_vars = __pyx_v_n_vars;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":17
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":17
  *         self.n = n
  *         self.n_vars = n_vars
  *         self.varpos = <int *>malloc(n_vars*sizeof(int))             # <<<<<<<<<<<<<<
@@ -25557,7 +25248,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
  */
   __pyx_v_self->varpos = ((int *)malloc((__pyx_v_n_vars * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":18
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":18
  *         self.n_vars = n_vars
  *         self.varpos = <int *>malloc(n_vars*sizeof(int))
  *         j = 0             # <<<<<<<<<<<<<<
@@ -25566,7 +25257,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
  */
   __pyx_v_j = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":19
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":19
  *         self.varpos = <int *>malloc(n_vars*sizeof(int))
  *         j = 0
  *         for i from 0 <= i < n:             # <<<<<<<<<<<<<<
@@ -25576,7 +25267,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   __pyx_t_2 = __pyx_v_n;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":20
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":20
  *         j = 0
  *         for i from 0 <= i < n:
  *             if sym_isvar(self.syms[i]):             # <<<<<<<<<<<<<<
@@ -25586,7 +25277,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     __pyx_t_4 = __pyx_f_3_sa_sym_isvar((__pyx_v_self->syms[__pyx_v_i]));
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":21
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":21
  *         for i from 0 <= i < n:
  *             if sym_isvar(self.syms[i]):
  *                 self.varpos[j] = i             # <<<<<<<<<<<<<<
@@ -25595,7 +25286,7 @@ static int __pyx_pf_3_sa_6Phrase___cinit__(struct __pyx_obj_3_sa_Phrase *__pyx_v
  */
       (__pyx_v_self->varpos[__pyx_v_j]) = __pyx_v_i;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":22
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":22
  *             if sym_isvar(self.syms[i]):
  *                 self.varpos[j] = i
  *                 j = j + 1             # <<<<<<<<<<<<<<
@@ -25628,7 +25319,7 @@ static void __pyx_pw_3_sa_6Phrase_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":24
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":24
  *                 j = j + 1
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -25640,7 +25331,7 @@ static void __pyx_pf_3_sa_6Phrase_2__dealloc__(struct __pyx_obj_3_sa_Phrase *__p
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":25
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":25
  * 
  *     def __dealloc__(self):
  *         free(self.syms)             # <<<<<<<<<<<<<<
@@ -25649,7 +25340,7 @@ static void __pyx_pf_3_sa_6Phrase_2__dealloc__(struct __pyx_obj_3_sa_Phrase *__p
  */
   free(__pyx_v_self->syms);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":26
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":26
  *     def __dealloc__(self):
  *         free(self.syms)
  *         free(self.varpos)             # <<<<<<<<<<<<<<
@@ -25672,7 +25363,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_5__str__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":28
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":28
  *         free(self.varpos)
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -25696,7 +25387,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_4__str__(struct __pyx_obj_3_sa_Phrase *__
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__str__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":29
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":29
  * 
  *     def __str__(self):
  *         strs = []             # <<<<<<<<<<<<<<
@@ -25708,7 +25399,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_4__str__(struct __pyx_obj_3_sa_Phrase *__
   __pyx_v_strs = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":31
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":31
  *         strs = []
  *         cdef int i, s
  *         for i from 0 <= i < self.n:             # <<<<<<<<<<<<<<
@@ -25718,7 +25409,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_4__str__(struct __pyx_obj_3_sa_Phrase *__
   __pyx_t_2 = __pyx_v_self->n;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":32
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":32
  *         cdef int i, s
  *         for i from 0 <= i < self.n:
  *             s = self.syms[i]             # <<<<<<<<<<<<<<
@@ -25727,7 +25418,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_4__str__(struct __pyx_obj_3_sa_Phrase *__
  */
     __pyx_v_s = (__pyx_v_self->syms[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":33
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":33
  *         for i from 0 <= i < self.n:
  *             s = self.syms[i]
  *             strs.append(sym_tostring(s))             # <<<<<<<<<<<<<<
@@ -25740,7 +25431,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_4__str__(struct __pyx_obj_3_sa_Phrase *__
     __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":34
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":34
  *             s = self.syms[i]
  *             strs.append(sym_tostring(s))
  *         return ' '.join(strs)             # <<<<<<<<<<<<<<
@@ -25790,7 +25481,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_7handle(PyObject *__pyx_v_self, CYTHON_UN
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":36
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":36
  *         return ' '.join(strs)
  * 
  *     def handle(self):             # <<<<<<<<<<<<<<
@@ -25814,7 +25505,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("handle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":39
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":39
  *         """return a hashable representation that normalizes the ordering
  *         of the nonterminal indices"""
  *         norm = []             # <<<<<<<<<<<<<<
@@ -25826,7 +25517,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
   __pyx_v_norm = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":41
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":41
  *         norm = []
  *         cdef int i, j, s
  *         i = 1             # <<<<<<<<<<<<<<
@@ -25835,7 +25526,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
  */
   __pyx_v_i = 1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":42
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":42
  *         cdef int i, j, s
  *         i = 1
  *         j = 0             # <<<<<<<<<<<<<<
@@ -25844,7 +25535,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
  */
   __pyx_v_j = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":43
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":43
  *         i = 1
  *         j = 0
  *         for j from 0 <= j < self.n:             # <<<<<<<<<<<<<<
@@ -25854,7 +25545,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
   __pyx_t_2 = __pyx_v_self->n;
   for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_2; __pyx_v_j++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":44
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":44
  *         j = 0
  *         for j from 0 <= j < self.n:
  *             s = self.syms[j]             # <<<<<<<<<<<<<<
@@ -25863,7 +25554,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
  */
     __pyx_v_s = (__pyx_v_self->syms[__pyx_v_j]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":45
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":45
  *         for j from 0 <= j < self.n:
  *             s = self.syms[j]
  *             if sym_isvar(s):             # <<<<<<<<<<<<<<
@@ -25873,7 +25564,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
     __pyx_t_3 = __pyx_f_3_sa_sym_isvar(__pyx_v_s);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":46
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":46
  *             s = self.syms[j]
  *             if sym_isvar(s):
  *                 s = sym_setindex(s,i)             # <<<<<<<<<<<<<<
@@ -25882,7 +25573,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
  */
       __pyx_v_s = __pyx_f_3_sa_sym_setindex(__pyx_v_s, __pyx_v_i);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":47
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":47
  *             if sym_isvar(s):
  *                 s = sym_setindex(s,i)
  *                 i = i + 1             # <<<<<<<<<<<<<<
@@ -25894,7 +25585,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":48
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":48
  *                 s = sym_setindex(s,i)
  *                 i = i + 1
  *             norm.append(s)             # <<<<<<<<<<<<<<
@@ -25907,7 +25598,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_6handle(struct __pyx_obj_3_sa_Phrase *__p
     __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":49
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":49
  *                 i = i + 1
  *             norm.append(s)
  *         return tuple(norm)             # <<<<<<<<<<<<<<
@@ -25945,7 +25636,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_9strhandle(PyObject *__pyx_v_self, CYTHON
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":51
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":51
  *         return tuple(norm)
  * 
  *     def strhandle(self):             # <<<<<<<<<<<<<<
@@ -25972,7 +25663,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("strhandle", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":52
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":52
  * 
  *     def strhandle(self):
  *         strs = []             # <<<<<<<<<<<<<<
@@ -25984,7 +25675,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
   __pyx_v_strs = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":53
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":53
  *     def strhandle(self):
  *         strs = []
  *         norm = []             # <<<<<<<<<<<<<<
@@ -25996,7 +25687,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
   __pyx_v_norm = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":55
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":55
  *         norm = []
  *         cdef int i, j, s
  *         i = 1             # <<<<<<<<<<<<<<
@@ -26005,7 +25696,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
  */
   __pyx_v_i = 1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":56
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":56
  *         cdef int i, j, s
  *         i = 1
  *         j = 0             # <<<<<<<<<<<<<<
@@ -26014,7 +25705,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
  */
   __pyx_v_j = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":57
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":57
  *         i = 1
  *         j = 0
  *         for j from 0 <= j < self.n:             # <<<<<<<<<<<<<<
@@ -26024,7 +25715,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
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-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":58
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":58
  *         j = 0
  *         for j from 0 <= j < self.n:
  *             s = self.syms[j]             # <<<<<<<<<<<<<<
@@ -26033,7 +25724,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
  */
     __pyx_v_s = (__pyx_v_self->syms[__pyx_v_j]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":59
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":59
  *         for j from 0 <= j < self.n:
  *             s = self.syms[j]
  *             if sym_isvar(s):             # <<<<<<<<<<<<<<
@@ -26043,7 +25734,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
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-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":60
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":60
  *             s = self.syms[j]
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  *                 s = sym_setindex(s,i)             # <<<<<<<<<<<<<<
@@ -26052,7 +25743,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
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-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":61
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":61
  *             if sym_isvar(s):
  *                 s = sym_setindex(s,i)
  *                 i = i + 1             # <<<<<<<<<<<<<<
@@ -26064,7 +25755,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":62
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":62
  *                 s = sym_setindex(s,i)
  *                 i = i + 1
  *             norm.append(sym_tostring(s))             # <<<<<<<<<<<<<<
@@ -26077,7 +25768,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_8strhandle(struct __pyx_obj_3_sa_Phrase *
     __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":63
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":63
  *                 i = i + 1
  *             norm.append(sym_tostring(s))
  *         return ' '.join(norm)             # <<<<<<<<<<<<<<
@@ -26127,7 +25818,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_11arity(PyObject *__pyx_v_self, CYTHON_UN
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":65
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":65
  *         return ' '.join(norm)
  * 
  *     def arity(self):             # <<<<<<<<<<<<<<
@@ -26144,7 +25835,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_10arity(struct __pyx_obj_3_sa_Phrase *__p
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   __Pyx_RefNannySetupContext("arity", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":66
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":66
  * 
  *     def arity(self):
  *         return self.n_vars             # <<<<<<<<<<<<<<
@@ -26181,7 +25872,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_13getvarpos(PyObject *__pyx_v_self, PyObj
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":68
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":68
  *         return self.n_vars
  * 
  *     def getvarpos(self, i):             # <<<<<<<<<<<<<<
@@ -26201,26 +25892,28 @@ static PyObject *__pyx_pf_3_sa_6Phrase_12getvarpos(struct __pyx_obj_3_sa_Phrase
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("getvarpos", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":69
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":69
  * 
  *     def getvarpos(self, i):
  *         if 0 <= i < self.n_vars:             # <<<<<<<<<<<<<<
  *             return self.varpos[i]
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-  __pyx_t_1 = PyObject_RichCompare(__pyx_int_0, __pyx_v_i, Py_LE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_RichCompare(__pyx_int_0, __pyx_v_i, Py_LE); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
   if (__Pyx_PyObject_IsTrue(__pyx_t_1)) {
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     __pyx_t_2 = PyInt_FromLong(__pyx_v_self->n_vars); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    __pyx_t_1 = PyObject_RichCompare(__pyx_v_i, __pyx_t_2, Py_LT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_1 = PyObject_RichCompare(__pyx_v_i, __pyx_t_2, Py_LT); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_1);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   }
   __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":70
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":70
  *     def getvarpos(self, i):
  *         if 0 <= i < self.n_vars:
  *             return self.varpos[i]             # <<<<<<<<<<<<<<
@@ -26238,7 +25931,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_12getvarpos(struct __pyx_obj_3_sa_Phrase
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":72
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":72
  *             return self.varpos[i]
  *         else:
  *             raise IndexError             # <<<<<<<<<<<<<<
@@ -26274,7 +25967,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_15getvar(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":74
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":74
  *             raise IndexError
  * 
  *     def getvar(self, i):             # <<<<<<<<<<<<<<
@@ -26294,26 +25987,28 @@ static PyObject *__pyx_pf_3_sa_6Phrase_14getvar(struct __pyx_obj_3_sa_Phrase *__
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   __Pyx_RefNannySetupContext("getvar", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":75
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":75
  * 
  *     def getvar(self, i):
  *         if 0 <= i < self.n_vars:             # <<<<<<<<<<<<<<
  *             return self.syms[self.varpos[i]]
  *         else:
  */
-  __pyx_t_1 = PyObject_RichCompare(__pyx_int_0, __pyx_v_i, Py_LE); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_RichCompare(__pyx_int_0, __pyx_v_i, Py_LE); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
   if (__Pyx_PyObject_IsTrue(__pyx_t_1)) {
     __Pyx_DECREF(__pyx_t_1);
     __pyx_t_2 = PyInt_FromLong(__pyx_v_self->n_vars); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_2);
-    __pyx_t_1 = PyObject_RichCompare(__pyx_v_i, __pyx_t_2, Py_LT); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_1 = PyObject_RichCompare(__pyx_v_i, __pyx_t_2, Py_LT); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_1);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   }
   __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":76
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":76
  *     def getvar(self, i):
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  *             return self.syms[self.varpos[i]]             # <<<<<<<<<<<<<<
@@ -26331,7 +26026,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_14getvar(struct __pyx_obj_3_sa_Phrase *__
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":78
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":78
  *             return self.syms[self.varpos[i]]
  *         else:
  *             raise IndexError             # <<<<<<<<<<<<<<
@@ -26356,7 +26051,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_14getvar(struct __pyx_obj_3_sa_Phrase *__
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":80
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":80
  *             raise IndexError
  * 
  *     cdef int chunkpos(self, int k):             # <<<<<<<<<<<<<<
@@ -26370,7 +26065,7 @@ int __pyx_f_3_sa_6Phrase_chunkpos(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
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-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":81
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":81
  * 
  *     cdef int chunkpos(self, int k):
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@@ -26380,7 +26075,7 @@ int __pyx_f_3_sa_6Phrase_chunkpos(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
   __pyx_t_1 = (__pyx_v_k == 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":82
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":82
  *     cdef int chunkpos(self, int k):
  *         if k == 0:
  *             return 0             # <<<<<<<<<<<<<<
@@ -26393,7 +26088,7 @@ int __pyx_f_3_sa_6Phrase_chunkpos(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":84
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":84
  *             return 0
  *         else:
  *             return self.varpos[k-1]+1             # <<<<<<<<<<<<<<
@@ -26411,7 +26106,7 @@ int __pyx_f_3_sa_6Phrase_chunkpos(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":86
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":86
  *             return self.varpos[k-1]+1
  * 
  *     cdef int chunklen(self, int k):             # <<<<<<<<<<<<<<
@@ -26425,7 +26120,7 @@ int __pyx_f_3_sa_6Phrase_chunklen(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
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   __Pyx_RefNannySetupContext("chunklen", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":87
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":87
  * 
  *     cdef int chunklen(self, int k):
  *         if self.n_vars == 0:             # <<<<<<<<<<<<<<
@@ -26435,7 +26130,7 @@ int __pyx_f_3_sa_6Phrase_chunklen(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
   __pyx_t_1 = (__pyx_v_self->n_vars == 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":88
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":88
  *     cdef int chunklen(self, int k):
  *         if self.n_vars == 0:
  *             return self.n             # <<<<<<<<<<<<<<
@@ -26447,7 +26142,7 @@ int __pyx_f_3_sa_6Phrase_chunklen(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":89
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":89
  *         if self.n_vars == 0:
  *             return self.n
  *         elif k == 0:             # <<<<<<<<<<<<<<
@@ -26457,7 +26152,7 @@ int __pyx_f_3_sa_6Phrase_chunklen(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
   __pyx_t_1 = (__pyx_v_k == 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":90
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":90
  *             return self.n
  *         elif k == 0:
  *             return self.varpos[0]             # <<<<<<<<<<<<<<
@@ -26469,7 +26164,7 @@ int __pyx_f_3_sa_6Phrase_chunklen(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":91
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":91
  *         elif k == 0:
  *             return self.varpos[0]
  *         elif k == self.n_vars:             # <<<<<<<<<<<<<<
@@ -26479,7 +26174,7 @@ int __pyx_f_3_sa_6Phrase_chunklen(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
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   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":92
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":92
  *             return self.varpos[0]
  *         elif k == self.n_vars:
  *             return self.n-self.varpos[k-1]-1             # <<<<<<<<<<<<<<
@@ -26492,7 +26187,7 @@ int __pyx_f_3_sa_6Phrase_chunklen(struct __pyx_obj_3_sa_Phrase *__pyx_v_self, in
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":94
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":94
  *             return self.n-self.varpos[k-1]-1
  *         else:
  *             return self.varpos[k]-self.varpos[k-1]-1             # <<<<<<<<<<<<<<
@@ -26521,7 +26216,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_17clen(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":96
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":96
  *             return self.varpos[k]-self.varpos[k-1]-1
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  *     def clen(self, k):             # <<<<<<<<<<<<<<
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-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":97
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":97
  * 
  *     def clen(self, k):
  *          return self.chunklen(k)             # <<<<<<<<<<<<<<
@@ -26577,7 +26272,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_19getchunk(PyObject *__pyx_v_self, PyObje
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":99
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":99
  *          return self.chunklen(k)
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  *     def getchunk(self, ci):             # <<<<<<<<<<<<<<
@@ -26600,7 +26295,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_18getchunk(struct __pyx_obj_3_sa_Phrase *
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-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":101
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":101
  *     def getchunk(self, ci):
  *         cdef int start, stop
  *         start = self.chunkpos(ci)             # <<<<<<<<<<<<<<
@@ -26610,7 +26305,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_18getchunk(struct __pyx_obj_3_sa_Phrase *
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-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":102
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":102
  *         cdef int start, stop
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  *         stop = start+self.chunklen(ci)             # <<<<<<<<<<<<<<
@@ -26620,7 +26315,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_18getchunk(struct __pyx_obj_3_sa_Phrase *
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_ci); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 102; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_stop = (__pyx_v_start + ((struct __pyx_vtabstruct_3_sa_Phrase *)__pyx_v_self->__pyx_vtab)->chunklen(__pyx_v_self, __pyx_t_1));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":103
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":103
  *         start = self.chunkpos(ci)
  *         stop = start+self.chunklen(ci)
  *         chunk = []             # <<<<<<<<<<<<<<
@@ -26632,7 +26327,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_18getchunk(struct __pyx_obj_3_sa_Phrase *
   __pyx_v_chunk = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":104
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":104
  *         stop = start+self.chunklen(ci)
  *         chunk = []
  *         for i from start <= i < stop:             # <<<<<<<<<<<<<<
@@ -26642,7 +26337,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_18getchunk(struct __pyx_obj_3_sa_Phrase *
   __pyx_t_1 = __pyx_v_stop;
   for (__pyx_v_i = __pyx_v_start; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":105
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":105
  *         chunk = []
  *         for i from start <= i < stop:
  *             chunk.append(self.syms[i])             # <<<<<<<<<<<<<<
@@ -26655,7 +26350,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_18getchunk(struct __pyx_obj_3_sa_Phrase *
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":106
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":106
  *         for i from start <= i < stop:
  *             chunk.append(self.syms[i])
  *         return chunk             # <<<<<<<<<<<<<<
@@ -26693,7 +26388,7 @@ static int __pyx_pw_3_sa_6Phrase_21__cmp__(PyObject *__pyx_v_self, PyObject *__p
 }
 #endif /*!(#if PY_MAJOR_VERSION < 3)*/
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":108
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":108
  *         return chunk
  * 
  *     def __cmp__(self, other):             # <<<<<<<<<<<<<<
@@ -26716,7 +26411,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cmp__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":111
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":111
  *         cdef Phrase otherp
  *         cdef int i
  *         otherp = other             # <<<<<<<<<<<<<<
@@ -26727,7 +26422,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   __Pyx_INCREF(__pyx_v_other);
   __pyx_v_otherp = ((struct __pyx_obj_3_sa_Phrase *)__pyx_v_other);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":112
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":112
  *         cdef int i
  *         otherp = other
  *         for i from 0 <= i < min(self.n, otherp.n):             # <<<<<<<<<<<<<<
@@ -26744,7 +26439,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   __pyx_t_1 = __pyx_t_3;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":113
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":113
  *         otherp = other
  *         for i from 0 <= i < min(self.n, otherp.n):
  *             if self.syms[i] < otherp.syms[i]:             # <<<<<<<<<<<<<<
@@ -26754,7 +26449,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     __pyx_t_4 = ((__pyx_v_self->syms[__pyx_v_i]) < (__pyx_v_otherp->syms[__pyx_v_i]));
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":114
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":114
  *         for i from 0 <= i < min(self.n, otherp.n):
  *             if self.syms[i] < otherp.syms[i]:
  *                 return -1             # <<<<<<<<<<<<<<
@@ -26766,7 +26461,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
       goto __pyx_L5;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":115
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":115
  *             if self.syms[i] < otherp.syms[i]:
  *                 return -1
  *             elif self.syms[i] > otherp.syms[i]:             # <<<<<<<<<<<<<<
@@ -26776,7 +26471,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     __pyx_t_4 = ((__pyx_v_self->syms[__pyx_v_i]) > (__pyx_v_otherp->syms[__pyx_v_i]));
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":116
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":116
  *                 return -1
  *             elif self.syms[i] > otherp.syms[i]:
  *                 return 1             # <<<<<<<<<<<<<<
@@ -26790,7 +26485,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":117
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":117
  *             elif self.syms[i] > otherp.syms[i]:
  *                 return 1
  *         if self.n < otherp.n:             # <<<<<<<<<<<<<<
@@ -26800,7 +26495,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   __pyx_t_4 = (__pyx_v_self->n < __pyx_v_otherp->n);
   if (__pyx_t_4) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":118
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":118
  *                 return 1
  *         if self.n < otherp.n:
  *             return -1             # <<<<<<<<<<<<<<
@@ -26812,7 +26507,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
     goto __pyx_L6;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":119
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":119
  *         if self.n < otherp.n:
  *             return -1
  *         elif self.n > otherp.n:             # <<<<<<<<<<<<<<
@@ -26822,7 +26517,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   __pyx_t_4 = (__pyx_v_self->n > __pyx_v_otherp->n);
   if (__pyx_t_4) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":120
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":120
  *             return -1
  *         elif self.n > otherp.n:
  *             return 1             # <<<<<<<<<<<<<<
@@ -26835,7 +26530,7 @@ static int __pyx_pf_3_sa_6Phrase_20__cmp__(struct __pyx_obj_3_sa_Phrase *__pyx_v
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":122
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":122
  *             return 1
  *         else:
  *             return 0             # <<<<<<<<<<<<<<
@@ -26870,7 +26565,7 @@ static Py_hash_t __pyx_pw_3_sa_6Phrase_23__hash__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":124
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":124
  *             return 0
  * 
  *     def __hash__(self):             # <<<<<<<<<<<<<<
@@ -26887,7 +26582,7 @@ static Py_hash_t __pyx_pf_3_sa_6Phrase_22__hash__(struct __pyx_obj_3_sa_Phrase *
   int __pyx_t_2;
   __Pyx_RefNannySetupContext("__hash__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":127
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":127
  *         cdef int i
  *         cdef unsigned h
  *         h = 0             # <<<<<<<<<<<<<<
@@ -26896,7 +26591,7 @@ static Py_hash_t __pyx_pf_3_sa_6Phrase_22__hash__(struct __pyx_obj_3_sa_Phrase *
  */
   __pyx_v_h = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":128
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":128
  *         cdef unsigned h
  *         h = 0
  *         for i from 0 <= i < self.n:             # <<<<<<<<<<<<<<
@@ -26906,7 +26601,7 @@ static Py_hash_t __pyx_pf_3_sa_6Phrase_22__hash__(struct __pyx_obj_3_sa_Phrase *
   __pyx_t_1 = __pyx_v_self->n;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":129
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":129
  *         h = 0
  *         for i from 0 <= i < self.n:
  *             if self.syms[i] > 0:             # <<<<<<<<<<<<<<
@@ -26916,7 +26611,7 @@ static Py_hash_t __pyx_pf_3_sa_6Phrase_22__hash__(struct __pyx_obj_3_sa_Phrase *
     __pyx_t_2 = ((__pyx_v_self->syms[__pyx_v_i]) > 0);
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":130
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":130
  *         for i from 0 <= i < self.n:
  *             if self.syms[i] > 0:
  *                 h = (h << 1) + self.syms[i]             # <<<<<<<<<<<<<<
@@ -26928,7 +26623,7 @@ static Py_hash_t __pyx_pf_3_sa_6Phrase_22__hash__(struct __pyx_obj_3_sa_Phrase *
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":132
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":132
  *                 h = (h << 1) + self.syms[i]
  *             else:
  *                 h = (h << 1) + -self.syms[i]             # <<<<<<<<<<<<<<
@@ -26940,7 +26635,7 @@ static Py_hash_t __pyx_pf_3_sa_6Phrase_22__hash__(struct __pyx_obj_3_sa_Phrase *
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":133
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":133
  *             else:
  *                 h = (h << 1) + -self.syms[i]
  *         return h             # <<<<<<<<<<<<<<
@@ -26968,7 +26663,7 @@ static Py_ssize_t __pyx_pw_3_sa_6Phrase_25__len__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":135
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":135
  *         return h
  * 
  *     def __len__(self):             # <<<<<<<<<<<<<<
@@ -26981,7 +26676,7 @@ static Py_ssize_t __pyx_pf_3_sa_6Phrase_24__len__(struct __pyx_obj_3_sa_Phrase *
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__len__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":136
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":136
  * 
  *     def __len__(self):
  *         return self.n             # <<<<<<<<<<<<<<
@@ -27008,7 +26703,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_27__getitem__(PyObject *__pyx_v_self, PyO
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":138
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":138
  *         return self.n
  * 
  *     def __getitem__(self, i):             # <<<<<<<<<<<<<<
@@ -27026,7 +26721,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_26__getitem__(struct __pyx_obj_3_sa_Phras
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__getitem__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":139
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":139
  * 
  *     def __getitem__(self, i):
  *         return self.syms[i]             # <<<<<<<<<<<<<<
@@ -27065,7 +26760,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_29__iter__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":141
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":141
  *         return self.syms[i]
  * 
  *     def __iter__(self):             # <<<<<<<<<<<<<<
@@ -27127,7 +26822,7 @@ static PyObject *__pyx_gb_3_sa_6Phrase_30generator2(__pyx_GeneratorObject *__pyx
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":143
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":143
  *     def __iter__(self):
  *         cdef int i
  *         for i from 0 <= i < self.n:             # <<<<<<<<<<<<<<
@@ -27137,7 +26832,7 @@ static PyObject *__pyx_gb_3_sa_6Phrase_30generator2(__pyx_GeneratorObject *__pyx
   __pyx_t_1 = __pyx_cur_scope->__pyx_v_self->n;
   for (__pyx_cur_scope->__pyx_v_i = 0; __pyx_cur_scope->__pyx_v_i < __pyx_t_1; __pyx_cur_scope->__pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":144
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":144
  *         cdef int i
  *         for i from 0 <= i < self.n:
  *             yield self.syms[i]             # <<<<<<<<<<<<<<
@@ -27166,7 +26861,6 @@ static PyObject *__pyx_gb_3_sa_6Phrase_30generator2(__pyx_GeneratorObject *__pyx
   __pyx_L0:;
   __Pyx_XDECREF(__pyx_r);
   __pyx_generator->resume_label = -1;
-  __Pyx_Generator_clear((PyObject*)__pyx_generator);
   __Pyx_RefNannyFinishContext();
   return NULL;
 }
@@ -27176,11 +26870,11 @@ static PyObject *__pyx_pw_3_sa_6Phrase_32subst(PyObject *__pyx_v_self, PyObject
 static PyObject *__pyx_pw_3_sa_6Phrase_32subst(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   PyObject *__pyx_v_start = 0;
   PyObject *__pyx_v_children = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__start,&__pyx_n_s__children,0};
   PyObject *__pyx_r = 0;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("subst (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__start,&__pyx_n_s__children,0};
     PyObject* values[2] = {0,0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -27194,10 +26888,12 @@ static PyObject *__pyx_pw_3_sa_6Phrase_32subst(PyObject *__pyx_v_self, PyObject
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__start)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__start);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
         case  1:
-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__children)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__children);
+        if (likely(values[1])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("subst", 1, 2, 2, 1); {__pyx_filename = __pyx_f[7]; __pyx_lineno = 146; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
@@ -27227,7 +26923,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_32subst(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":146
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":146
  *             yield self.syms[i]
  * 
  *     def subst(self, start, children):             # <<<<<<<<<<<<<<
@@ -27250,7 +26946,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_31subst(struct __pyx_obj_3_sa_Phrase *__p
   __Pyx_RefNannySetupContext("subst", 0);
   __Pyx_INCREF(__pyx_v_start);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":148
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":148
  *     def subst(self, start, children):
  *         cdef int i
  *         for i from 0 <= i < self.n:             # <<<<<<<<<<<<<<
@@ -27260,7 +26956,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_31subst(struct __pyx_obj_3_sa_Phrase *__p
   __pyx_t_1 = __pyx_v_self->n;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":149
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":149
  *         cdef int i
  *         for i from 0 <= i < self.n:
  *             if sym_isvar(self.syms[i]):             # <<<<<<<<<<<<<<
@@ -27270,7 +26966,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_31subst(struct __pyx_obj_3_sa_Phrase *__p
     __pyx_t_2 = __pyx_f_3_sa_sym_isvar((__pyx_v_self->syms[__pyx_v_i]));
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":150
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":150
  *         for i from 0 <= i < self.n:
  *             if sym_isvar(self.syms[i]):
  *                 start = start + children[sym_getindex(self.syms[i])-1]             # <<<<<<<<<<<<<<
@@ -27290,7 +26986,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_31subst(struct __pyx_obj_3_sa_Phrase *__p
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":152
+      /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":152
  *                 start = start + children[sym_getindex(self.syms[i])-1]
  *             else:
  *                 start = start + (self.syms[i],)             # <<<<<<<<<<<<<<
@@ -27314,7 +27010,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_31subst(struct __pyx_obj_3_sa_Phrase *__p
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":153
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":153
  *             else:
  *                 start = start + (self.syms[i],)
  *         return start             # <<<<<<<<<<<<<<
@@ -27351,7 +27047,7 @@ static PyObject *__pyx_pw_3_sa_6Phrase_5words_1__get__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":156
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":156
  * 
  *     property words:
  *         def __get__(self):             # <<<<<<<<<<<<<<
@@ -27375,7 +27071,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_5words___get__(struct __pyx_obj_3_sa_Phra
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__get__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":157
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":157
  *     property words:
  *         def __get__(self):
  *             return [sym_tostring(w) for w in self if not sym_isvar(w)]             # <<<<<<<<<<<<<<
@@ -27396,18 +27092,10 @@ static PyObject *__pyx_pf_3_sa_6Phrase_5words___get__(struct __pyx_obj_3_sa_Phra
   for (;;) {
     if (!__pyx_t_4 && PyList_CheckExact(__pyx_t_2)) {
       if (__pyx_t_3 >= PyList_GET_SIZE(__pyx_t_2)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++;
     } else if (!__pyx_t_4 && PyTuple_CheckExact(__pyx_t_2)) {
       if (__pyx_t_3 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++;
     } else {
       __pyx_t_5 = __pyx_t_4(__pyx_t_2);
       if (unlikely(!__pyx_t_5)) {
@@ -27428,7 +27116,7 @@ static PyObject *__pyx_pf_3_sa_6Phrase_5words___get__(struct __pyx_obj_3_sa_Phra
       __pyx_t_6 = __Pyx_PyInt_AsInt(__pyx_v_w); if (unlikely((__pyx_t_6 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __pyx_t_5 = PyBytes_FromString(__pyx_f_3_sa_sym_tostring(__pyx_t_6)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(((PyObject *)__pyx_t_5));
-      if (unlikely(__Pyx_PyList_Append(__pyx_t_1, (PyObject*)__pyx_t_5))) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      if (unlikely(PyList_Append(__pyx_t_1, (PyObject*)__pyx_t_5))) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(((PyObject *)__pyx_t_5)); __pyx_t_5 = 0;
       goto __pyx_L5;
     }
@@ -27463,14 +27151,14 @@ static int __pyx_pw_3_sa_4Rule_1__cinit__(PyObject *__pyx_v_self, PyObject *__py
   struct __pyx_obj_3_sa_Phrase *__pyx_v_e = 0;
   PyObject *__pyx_v_scores = 0;
   PyObject *__pyx_v_word_alignments = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__lhs,&__pyx_n_s__f,&__pyx_n_s__e,&__pyx_n_s__scores,&__pyx_n_s__word_alignments,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__lhs,&__pyx_n_s__f,&__pyx_n_s__e,&__pyx_n_s__scores,&__pyx_n_s__word_alignments,0};
     PyObject* values[5] = {0,0,0,0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":161
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":161
  * cdef class Rule:
  * 
  *     def __cinit__(self, int lhs, Phrase f, Phrase e, scores=None, word_alignments=None):             # <<<<<<<<<<<<<<
@@ -27494,15 +27182,18 @@ static int __pyx_pw_3_sa_4Rule_1__cinit__(PyObject *__pyx_v_self, PyObject *__py
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__lhs)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__lhs);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
         case  1:
-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__f)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__f);
+        if (likely(values[1])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, 1); {__pyx_filename = __pyx_f[7]; __pyx_lineno = 161; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
         case  2:
-        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__e)) != 0)) kw_args--;
+        values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__e);
+        if (likely(values[2])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 3, 5, 2); {__pyx_filename = __pyx_f[7]; __pyx_lineno = 161; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
@@ -27567,7 +27258,7 @@ static int __pyx_pf_3_sa_4Rule___cinit__(struct __pyx_obj_3_sa_Rule *__pyx_v_sel
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":162
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":162
  * 
  *     def __cinit__(self, int lhs, Phrase f, Phrase e, scores=None, word_alignments=None):
  *         if not sym_isvar(lhs): raise Exception('Invalid LHS symbol: %d' % lhs)             # <<<<<<<<<<<<<<
@@ -27596,7 +27287,7 @@ static int __pyx_pf_3_sa_4Rule___cinit__(struct __pyx_obj_3_sa_Rule *__pyx_v_sel
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":163
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":163
  *     def __cinit__(self, int lhs, Phrase f, Phrase e, scores=None, word_alignments=None):
  *         if not sym_isvar(lhs): raise Exception('Invalid LHS symbol: %d' % lhs)
  *         self.lhs = lhs             # <<<<<<<<<<<<<<
@@ -27605,7 +27296,7 @@ static int __pyx_pf_3_sa_4Rule___cinit__(struct __pyx_obj_3_sa_Rule *__pyx_v_sel
  */
   __pyx_v_self->lhs = __pyx_v_lhs;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":164
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":164
  *         if not sym_isvar(lhs): raise Exception('Invalid LHS symbol: %d' % lhs)
  *         self.lhs = lhs
  *         self.f = f             # <<<<<<<<<<<<<<
@@ -27618,7 +27309,7 @@ static int __pyx_pf_3_sa_4Rule___cinit__(struct __pyx_obj_3_sa_Rule *__pyx_v_sel
   __Pyx_DECREF(((PyObject *)__pyx_v_self->f));
   __pyx_v_self->f = __pyx_v_f;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":165
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":165
  *         self.lhs = lhs
  *         self.f = f
  *         self.e = e             # <<<<<<<<<<<<<<
@@ -27631,7 +27322,7 @@ static int __pyx_pf_3_sa_4Rule___cinit__(struct __pyx_obj_3_sa_Rule *__pyx_v_sel
   __Pyx_DECREF(((PyObject *)__pyx_v_self->e));
   __pyx_v_self->e = __pyx_v_e;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":166
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":166
  *         self.f = f
  *         self.e = e
  *         self.word_alignments = word_alignments             # <<<<<<<<<<<<<<
@@ -27644,7 +27335,7 @@ static int __pyx_pf_3_sa_4Rule___cinit__(struct __pyx_obj_3_sa_Rule *__pyx_v_sel
   __Pyx_DECREF(__pyx_v_self->word_alignments);
   __pyx_v_self->word_alignments = __pyx_v_word_alignments;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":167
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":167
  *         self.e = e
  *         self.word_alignments = word_alignments
  *         self.scores = scores             # <<<<<<<<<<<<<<
@@ -27681,7 +27372,7 @@ static Py_hash_t __pyx_pw_3_sa_4Rule_3__hash__(PyObject *__pyx_v_self) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":169
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":169
  *         self.scores = scores
  * 
  *     def __hash__(self):             # <<<<<<<<<<<<<<
@@ -27700,7 +27391,7 @@ static Py_hash_t __pyx_pf_3_sa_4Rule_2__hash__(struct __pyx_obj_3_sa_Rule *__pyx
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__hash__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":170
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":170
  * 
  *     def __hash__(self):
  *         return hash((self.lhs, self.f, self.e))             # <<<<<<<<<<<<<<
@@ -27756,7 +27447,7 @@ static int __pyx_pw_3_sa_4Rule_5__cmp__(PyObject *__pyx_v_self, PyObject *__pyx_
 }
 #endif /*!(#if PY_MAJOR_VERSION < 3)*/
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":172
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":172
  *         return hash((self.lhs, self.f, self.e))
  * 
  *     def __cmp__(self, Rule other):             # <<<<<<<<<<<<<<
@@ -27777,7 +27468,7 @@ static int __pyx_pf_3_sa_4Rule_4__cmp__(struct __pyx_obj_3_sa_Rule *__pyx_v_self
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cmp__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":173
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":173
  * 
  *     def __cmp__(self, Rule other):
  *         return cmp((self.lhs, self.f, self.e, self.word_alignments),             # <<<<<<<<<<<<<<
@@ -27801,7 +27492,7 @@ static int __pyx_pf_3_sa_4Rule_4__cmp__(struct __pyx_obj_3_sa_Rule *__pyx_v_self
   __Pyx_GIVEREF(__pyx_v_self->word_alignments);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":174
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":174
  *     def __cmp__(self, Rule other):
  *         return cmp((self.lhs, self.f, self.e, self.word_alignments),
  *                 (other.lhs, other.f, other.e, self.word_alignments))             # <<<<<<<<<<<<<<
@@ -27870,7 +27561,7 @@ static PyObject *__pyx_pw_3_sa_4Rule_7fmerge(PyObject *__pyx_v_self, PyObject *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":176
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":176
  *                 (other.lhs, other.f, other.e, self.word_alignments))
  * 
  *     def fmerge(self, Phrase f):             # <<<<<<<<<<<<<<
@@ -27888,19 +27579,20 @@ static PyObject *__pyx_pf_3_sa_4Rule_6fmerge(struct __pyx_obj_3_sa_Rule *__pyx_v
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("fmerge", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":177
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":177
  * 
  *     def fmerge(self, Phrase f):
  *         if self.f == f:             # <<<<<<<<<<<<<<
  *             self.f = f
  * 
  */
-  __pyx_t_1 = PyObject_RichCompare(((PyObject *)__pyx_v_self->f), ((PyObject *)__pyx_v_f), Py_EQ); __Pyx_XGOTREF(__pyx_t_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 177; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_RichCompare(((PyObject *)__pyx_v_self->f), ((PyObject *)__pyx_v_f), Py_EQ); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 177; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 177; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":178
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":178
  *     def fmerge(self, Phrase f):
  *         if self.f == f:
  *             self.f = f             # <<<<<<<<<<<<<<
@@ -27939,7 +27631,7 @@ static PyObject *__pyx_pw_3_sa_4Rule_9arity(PyObject *__pyx_v_self, CYTHON_UNUSE
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":180
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":180
  *             self.f = f
  * 
  *     def arity(self):             # <<<<<<<<<<<<<<
@@ -27957,7 +27649,7 @@ static PyObject *__pyx_pf_3_sa_4Rule_8arity(struct __pyx_obj_3_sa_Rule *__pyx_v_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("arity", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":181
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":181
  * 
  *     def arity(self):
  *         return self.f.arity()             # <<<<<<<<<<<<<<
@@ -27999,7 +27691,7 @@ static PyObject *__pyx_pw_3_sa_4Rule_11__str__(PyObject *__pyx_v_self) {
 }
 static PyObject *__pyx_gb_3_sa_4Rule_7__str___2generator13(__pyx_GeneratorObject *__pyx_generator, PyObject *__pyx_sent_value); /* proto */
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":187
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":187
  *         fields = [sym_tostring(self.lhs), str(self.f), str(self.e), str(self.scores)]
  *         if self.word_alignments is not None:
  *             fields.append(' '.join('%d-%d' % a for a in self.alignments()))             # <<<<<<<<<<<<<<
@@ -28080,18 +27772,10 @@ static PyObject *__pyx_gb_3_sa_4Rule_7__str___2generator13(__pyx_GeneratorObject
   for (;;) {
     if (!__pyx_t_4 && PyList_CheckExact(__pyx_t_1)) {
       if (__pyx_t_3 >= PyList_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_3); __Pyx_INCREF(__pyx_t_2); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 187; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 187; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_3); __Pyx_INCREF(__pyx_t_2); __pyx_t_3++;
     } else if (!__pyx_t_4 && PyTuple_CheckExact(__pyx_t_1)) {
       if (__pyx_t_3 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_3); __Pyx_INCREF(__pyx_t_2); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 187; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 187; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_3); __Pyx_INCREF(__pyx_t_2); __pyx_t_3++;
     } else {
       __pyx_t_2 = __pyx_t_4(__pyx_t_1);
       if (unlikely(!__pyx_t_2)) {
@@ -28139,12 +27823,11 @@ static PyObject *__pyx_gb_3_sa_4Rule_7__str___2generator13(__pyx_GeneratorObject
   __pyx_L0:;
   __Pyx_XDECREF(__pyx_r);
   __pyx_generator->resume_label = -1;
-  __Pyx_Generator_clear((PyObject*)__pyx_generator);
   __Pyx_RefNannyFinishContext();
   return NULL;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":183
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":183
  *         return self.f.arity()
  * 
  *     def __str__(self):             # <<<<<<<<<<<<<<
@@ -28178,7 +27861,7 @@ static PyObject *__pyx_pf_3_sa_4Rule_10__str__(struct __pyx_obj_3_sa_Rule *__pyx
   __Pyx_INCREF((PyObject *)__pyx_cur_scope->__pyx_v_self);
   __Pyx_GIVEREF((PyObject *)__pyx_cur_scope->__pyx_v_self);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":185
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":185
  *     def __str__(self):
  *         cdef unsigned i
  *         fields = [sym_tostring(self.lhs), str(self.f), str(self.e), str(self.scores)]             # <<<<<<<<<<<<<<
@@ -28228,7 +27911,7 @@ static PyObject *__pyx_pf_3_sa_4Rule_10__str__(struct __pyx_obj_3_sa_Rule *__pyx
   __pyx_v_fields = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":186
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":186
  *         cdef unsigned i
  *         fields = [sym_tostring(self.lhs), str(self.f), str(self.e), str(self.scores)]
  *         if self.word_alignments is not None:             # <<<<<<<<<<<<<<
@@ -28238,7 +27921,7 @@ static PyObject *__pyx_pf_3_sa_4Rule_10__str__(struct __pyx_obj_3_sa_Rule *__pyx
   __pyx_t_6 = (__pyx_cur_scope->__pyx_v_self->word_alignments != Py_None);
   if (__pyx_t_6) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":187
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":187
  *         fields = [sym_tostring(self.lhs), str(self.f), str(self.e), str(self.scores)]
  *         if self.word_alignments is not None:
  *             fields.append(' '.join('%d-%d' % a for a in self.alignments()))             # <<<<<<<<<<<<<<
@@ -28264,7 +27947,7 @@ static PyObject *__pyx_pf_3_sa_4Rule_10__str__(struct __pyx_obj_3_sa_Rule *__pyx
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":188
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":188
  *         if self.word_alignments is not None:
  *             fields.append(' '.join('%d-%d' % a for a in self.alignments()))
  *         return ' ||| '.join(fields)             # <<<<<<<<<<<<<<
@@ -28317,7 +28000,7 @@ static PyObject *__pyx_pw_3_sa_4Rule_13alignments(PyObject *__pyx_v_self, CYTHON
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rule.pxi":190
+/* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":190
  *         return ' ||| '.join(fields)
  * 
  *     def alignments(self):             # <<<<<<<<<<<<<<
@@ -28383,7 +28066,7 @@ static PyObject *__pyx_gb_3_sa_4Rule_14generator3(__pyx_GeneratorObject *__pyx_g
   __pyx_L3_first_run:;
   if (unlikely(!__pyx_sent_value)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 190; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":191
+  /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":191
  * 
  *     def alignments(self):
  *         for point in self.word_alignments:             # <<<<<<<<<<<<<<
@@ -28400,18 +28083,10 @@ static PyObject *__pyx_gb_3_sa_4Rule_14generator3(__pyx_GeneratorObject *__pyx_g
   for (;;) {
     if (!__pyx_t_3 && PyList_CheckExact(__pyx_t_1)) {
       if (__pyx_t_2 >= PyList_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 191; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 191; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
     } else if (!__pyx_t_3 && PyTuple_CheckExact(__pyx_t_1)) {
       if (__pyx_t_2 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-      #if CYTHON_COMPILING_IN_CPYTHON
-      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 191; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #else
-      __pyx_t_4 = PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 191; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-      #endif
+      __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_4); __pyx_t_2++;
     } else {
       __pyx_t_4 = __pyx_t_3(__pyx_t_1);
       if (unlikely(!__pyx_t_4)) {
@@ -28429,7 +28104,7 @@ static PyObject *__pyx_gb_3_sa_4Rule_14generator3(__pyx_GeneratorObject *__pyx_g
     __pyx_cur_scope->__pyx_v_point = __pyx_t_4;
     __pyx_t_4 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rule.pxi":192
+    /* "/home/paulb/workspace/cdec/python/src/sa/rule.pxi":192
  *     def alignments(self):
  *         for point in self.word_alignments:
  *             yield point/65536, point%65536             # <<<<<<<<<<<<<<
@@ -28477,7 +28152,6 @@ static PyObject *__pyx_gb_3_sa_4Rule_14generator3(__pyx_GeneratorObject *__pyx_g
   __pyx_L0:;
   __Pyx_XDECREF(__pyx_r);
   __pyx_generator->resume_label = -1;
-  __Pyx_Generator_clear((PyObject*)__pyx_generator);
   __Pyx_RefNannyFinishContext();
   return NULL;
 }
@@ -28544,7 +28218,7 @@ static PyObject *__pyx_pf_3_sa_4Rule_1e___get__(struct __pyx_obj_3_sa_Rule *__py
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":21
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":21
  *     int arr_len
  * 
  * cdef _Trie_Node* new_trie_node():             # <<<<<<<<<<<<<<
@@ -28558,7 +28232,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_new_trie_node(void) {
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("new_trie_node", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":23
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":23
  * cdef _Trie_Node* new_trie_node():
  *     cdef _Trie_Node* node
  *     node = <_Trie_Node*> malloc(sizeof(_Trie_Node))             # <<<<<<<<<<<<<<
@@ -28567,7 +28241,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_new_trie_node(void) {
  */
   __pyx_v_node = ((struct __pyx_t_3_sa__Trie_Node *)malloc((sizeof(struct __pyx_t_3_sa__Trie_Node))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":24
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":24
  *     cdef _Trie_Node* node
  *     node = <_Trie_Node*> malloc(sizeof(_Trie_Node))
  *     node.root = NULL             # <<<<<<<<<<<<<<
@@ -28576,7 +28250,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_new_trie_node(void) {
  */
   __pyx_v_node->root = NULL;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":25
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":25
  *     node = <_Trie_Node*> malloc(sizeof(_Trie_Node))
  *     node.root = NULL
  *     node.arr_len = 0             # <<<<<<<<<<<<<<
@@ -28585,7 +28259,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_new_trie_node(void) {
  */
   __pyx_v_node->arr_len = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":26
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":26
  *     node.root = NULL
  *     node.arr_len = 0
  *     node.arr = <int*> malloc(sizeof(0*sizeof(int)))             # <<<<<<<<<<<<<<
@@ -28594,7 +28268,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_new_trie_node(void) {
  */
   __pyx_v_node->arr = ((int *)malloc((sizeof((0 * (sizeof(int)))))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":27
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":27
  *     node.arr_len = 0
  *     node.arr = <int*> malloc(sizeof(0*sizeof(int)))
  *     return node             # <<<<<<<<<<<<<<
@@ -28610,7 +28284,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_new_trie_node(void) {
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":29
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":29
  *     return node
  * 
  * cdef _Trie_Edge* new_trie_edge(int val):             # <<<<<<<<<<<<<<
@@ -28624,7 +28298,7 @@ static struct __pyx_t_3_sa__Trie_Edge *__pyx_f_3_sa_new_trie_edge(int __pyx_v_va
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("new_trie_edge", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":31
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":31
  * cdef _Trie_Edge* new_trie_edge(int val):
  *     cdef _Trie_Edge* edge
  *     edge = <_Trie_Edge*> malloc(sizeof(_Trie_Edge))             # <<<<<<<<<<<<<<
@@ -28633,7 +28307,7 @@ static struct __pyx_t_3_sa__Trie_Edge *__pyx_f_3_sa_new_trie_edge(int __pyx_v_va
  */
   __pyx_v_edge = ((struct __pyx_t_3_sa__Trie_Edge *)malloc((sizeof(struct __pyx_t_3_sa__Trie_Edge))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":32
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":32
  *     cdef _Trie_Edge* edge
  *     edge = <_Trie_Edge*> malloc(sizeof(_Trie_Edge))
  *     edge.node = new_trie_node()             # <<<<<<<<<<<<<<
@@ -28642,7 +28316,7 @@ static struct __pyx_t_3_sa__Trie_Edge *__pyx_f_3_sa_new_trie_edge(int __pyx_v_va
  */
   __pyx_v_edge->node = __pyx_f_3_sa_new_trie_node();
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":33
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":33
  *     edge = <_Trie_Edge*> malloc(sizeof(_Trie_Edge))
  *     edge.node = new_trie_node()
  *     edge.bigger = NULL             # <<<<<<<<<<<<<<
@@ -28651,7 +28325,7 @@ static struct __pyx_t_3_sa__Trie_Edge *__pyx_f_3_sa_new_trie_edge(int __pyx_v_va
  */
   __pyx_v_edge->bigger = NULL;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":34
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":34
  *     edge.node = new_trie_node()
  *     edge.bigger = NULL
  *     edge.smaller = NULL             # <<<<<<<<<<<<<<
@@ -28660,7 +28334,7 @@ static struct __pyx_t_3_sa__Trie_Edge *__pyx_f_3_sa_new_trie_edge(int __pyx_v_va
  */
   __pyx_v_edge->smaller = NULL;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":35
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":35
  *     edge.bigger = NULL
  *     edge.smaller = NULL
  *     edge.val = val             # <<<<<<<<<<<<<<
@@ -28669,7 +28343,7 @@ static struct __pyx_t_3_sa__Trie_Edge *__pyx_f_3_sa_new_trie_edge(int __pyx_v_va
  */
   __pyx_v_edge->val = __pyx_v_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":36
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":36
  *     edge.smaller = NULL
  *     edge.val = val
  *     return edge             # <<<<<<<<<<<<<<
@@ -28685,7 +28359,7 @@ static struct __pyx_t_3_sa__Trie_Edge *__pyx_f_3_sa_new_trie_edge(int __pyx_v_va
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":38
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":38
  *     return edge
  * 
  * cdef free_trie_node(_Trie_Node* node):             # <<<<<<<<<<<<<<
@@ -28703,7 +28377,7 @@ static PyObject *__pyx_f_3_sa_free_trie_node(struct __pyx_t_3_sa__Trie_Node *__p
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   __Pyx_RefNannySetupContext("free_trie_node", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":39
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":39
  * 
  * cdef free_trie_node(_Trie_Node* node):
  *     if node != NULL:             # <<<<<<<<<<<<<<
@@ -28713,7 +28387,7 @@ static PyObject *__pyx_f_3_sa_free_trie_node(struct __pyx_t_3_sa__Trie_Node *__p
   __pyx_t_1 = (__pyx_v_node != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":40
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":40
  * cdef free_trie_node(_Trie_Node* node):
  *     if node != NULL:
  *         free_trie_edge(node.root)             # <<<<<<<<<<<<<<
@@ -28724,7 +28398,7 @@ static PyObject *__pyx_f_3_sa_free_trie_node(struct __pyx_t_3_sa__Trie_Node *__p
     __Pyx_GOTREF(__pyx_t_2);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":41
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":41
  *     if node != NULL:
  *         free_trie_edge(node.root)
  *         free(node.arr)             # <<<<<<<<<<<<<<
@@ -28748,7 +28422,7 @@ static PyObject *__pyx_f_3_sa_free_trie_node(struct __pyx_t_3_sa__Trie_Node *__p
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":43
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":43
  *         free(node.arr)
  * 
  * cdef free_trie_edge(_Trie_Edge* edge):             # <<<<<<<<<<<<<<
@@ -28766,7 +28440,7 @@ static PyObject *__pyx_f_3_sa_free_trie_edge(struct __pyx_t_3_sa__Trie_Edge *__p
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   __Pyx_RefNannySetupContext("free_trie_edge", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":44
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":44
  * 
  * cdef free_trie_edge(_Trie_Edge* edge):
  *     if edge != NULL:             # <<<<<<<<<<<<<<
@@ -28776,7 +28450,7 @@ static PyObject *__pyx_f_3_sa_free_trie_edge(struct __pyx_t_3_sa__Trie_Edge *__p
   __pyx_t_1 = (__pyx_v_edge != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":45
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":45
  * cdef free_trie_edge(_Trie_Edge* edge):
  *     if edge != NULL:
  *         free_trie_node(edge.node)             # <<<<<<<<<<<<<<
@@ -28787,7 +28461,7 @@ static PyObject *__pyx_f_3_sa_free_trie_edge(struct __pyx_t_3_sa__Trie_Edge *__p
     __Pyx_GOTREF(__pyx_t_2);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":46
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":46
  *     if edge != NULL:
  *         free_trie_node(edge.node)
  *         free_trie_edge(edge.bigger)             # <<<<<<<<<<<<<<
@@ -28798,7 +28472,7 @@ static PyObject *__pyx_f_3_sa_free_trie_edge(struct __pyx_t_3_sa__Trie_Edge *__p
     __Pyx_GOTREF(__pyx_t_2);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":47
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":47
  *         free_trie_node(edge.node)
  *         free_trie_edge(edge.bigger)
  *         free_trie_edge(edge.smaller)             # <<<<<<<<<<<<<<
@@ -28824,7 +28498,7 @@ static PyObject *__pyx_f_3_sa_free_trie_edge(struct __pyx_t_3_sa__Trie_Edge *__p
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":49
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":49
  *         free_trie_edge(edge.smaller)
  * 
  * cdef _Trie_Node* trie_find(_Trie_Node* node, int val):             # <<<<<<<<<<<<<<
@@ -28841,7 +28515,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("trie_find", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":51
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":51
  * cdef _Trie_Node* trie_find(_Trie_Node* node, int val):
  *     cdef _Trie_Edge* cur
  *     cur = node.root             # <<<<<<<<<<<<<<
@@ -28850,7 +28524,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
  */
   __pyx_v_cur = __pyx_v_node->root;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":52
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":52
  *     cdef _Trie_Edge* cur
  *     cur = node.root
  *     while cur != NULL and cur.val != val:             # <<<<<<<<<<<<<<
@@ -28867,7 +28541,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
     }
     if (!__pyx_t_3) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":53
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":53
  *     cur = node.root
  *     while cur != NULL and cur.val != val:
  *         if val > cur.val:             # <<<<<<<<<<<<<<
@@ -28877,7 +28551,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
     __pyx_t_3 = (__pyx_v_val > __pyx_v_cur->val);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":54
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":54
  *     while cur != NULL and cur.val != val:
  *         if val > cur.val:
  *             cur = cur.bigger             # <<<<<<<<<<<<<<
@@ -28888,7 +28562,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
       goto __pyx_L5;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":55
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":55
  *         if val > cur.val:
  *             cur = cur.bigger
  *         elif val < cur.val:             # <<<<<<<<<<<<<<
@@ -28898,7 +28572,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
     __pyx_t_3 = (__pyx_v_val < __pyx_v_cur->val);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":56
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":56
  *             cur = cur.bigger
  *         elif val < cur.val:
  *             cur = cur.smaller             # <<<<<<<<<<<<<<
@@ -28911,7 +28585,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":57
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":57
  *         elif val < cur.val:
  *             cur = cur.smaller
  *     if cur == NULL:             # <<<<<<<<<<<<<<
@@ -28921,7 +28595,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
   __pyx_t_3 = (__pyx_v_cur == NULL);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":58
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":58
  *             cur = cur.smaller
  *     if cur == NULL:
  *         return NULL             # <<<<<<<<<<<<<<
@@ -28934,7 +28608,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":60
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":60
  *         return NULL
  *     else:
  *         return cur.node             # <<<<<<<<<<<<<<
@@ -28952,7 +28626,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_find(struct __pyx_t_3_s
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":62
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":62
  *         return cur.node
  * 
  * cdef trie_node_data_append(_Trie_Node* node, int val):             # <<<<<<<<<<<<<<
@@ -28966,7 +28640,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_append(struct __pyx_t_3_sa__Trie_No
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("trie_node_data_append", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":64
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":64
  * cdef trie_node_data_append(_Trie_Node* node, int val):
  *     cdef int new_len
  *     new_len = node.arr_len + 1             # <<<<<<<<<<<<<<
@@ -28975,7 +28649,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_append(struct __pyx_t_3_sa__Trie_No
  */
   __pyx_v_new_len = (__pyx_v_node->arr_len + 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":65
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":65
  *     cdef int new_len
  *     new_len = node.arr_len + 1
  *     node.arr = <int*> realloc(node.arr, new_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -28984,7 +28658,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_append(struct __pyx_t_3_sa__Trie_No
  */
   __pyx_v_node->arr = ((int *)realloc(__pyx_v_node->arr, (__pyx_v_new_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":66
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":66
  *     new_len = node.arr_len + 1
  *     node.arr = <int*> realloc(node.arr, new_len*sizeof(int))
  *     node.arr[node.arr_len] = val             # <<<<<<<<<<<<<<
@@ -28993,7 +28667,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_append(struct __pyx_t_3_sa__Trie_No
  */
   (__pyx_v_node->arr[__pyx_v_node->arr_len]) = __pyx_v_val;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":67
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":67
  *     node.arr = <int*> realloc(node.arr, new_len*sizeof(int))
  *     node.arr[node.arr_len] = val
  *     node.arr_len = new_len             # <<<<<<<<<<<<<<
@@ -29008,7 +28682,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_append(struct __pyx_t_3_sa__Trie_No
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":69
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":69
  *     node.arr_len = new_len
  * 
  * cdef trie_node_data_extend(_Trie_Node* node, int* vals, int num_vals):             # <<<<<<<<<<<<<<
@@ -29022,7 +28696,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_extend(struct __pyx_t_3_sa__Trie_No
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("trie_node_data_extend", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":71
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":71
  * cdef trie_node_data_extend(_Trie_Node* node, int* vals, int num_vals):
  *     cdef int new_len
  *     new_len = node.arr_len + num_vals             # <<<<<<<<<<<<<<
@@ -29031,7 +28705,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_extend(struct __pyx_t_3_sa__Trie_No
  */
   __pyx_v_new_len = (__pyx_v_node->arr_len + __pyx_v_num_vals);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":72
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":72
  *     cdef int new_len
  *     new_len = node.arr_len + num_vals
  *     node.arr = <int*> realloc(node.arr, new_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -29040,7 +28714,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_extend(struct __pyx_t_3_sa__Trie_No
  */
   __pyx_v_node->arr = ((int *)realloc(__pyx_v_node->arr, (__pyx_v_new_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":73
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":73
  *     new_len = node.arr_len + num_vals
  *     node.arr = <int*> realloc(node.arr, new_len*sizeof(int))
  *     memcpy(node.arr + node.arr_len, vals, num_vals*sizeof(int))             # <<<<<<<<<<<<<<
@@ -29049,7 +28723,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_extend(struct __pyx_t_3_sa__Trie_No
  */
   memcpy((__pyx_v_node->arr + __pyx_v_node->arr_len), __pyx_v_vals, (__pyx_v_num_vals * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":74
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":74
  *     node.arr = <int*> realloc(node.arr, new_len*sizeof(int))
  *     memcpy(node.arr + node.arr_len, vals, num_vals*sizeof(int))
  *     node.arr_len = new_len             # <<<<<<<<<<<<<<
@@ -29064,7 +28738,7 @@ static PyObject *__pyx_f_3_sa_trie_node_data_extend(struct __pyx_t_3_sa__Trie_No
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":77
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":77
  * 
  * 
  * cdef _Trie_Node* trie_insert(_Trie_Node* node, int val):             # <<<<<<<<<<<<<<
@@ -29081,7 +28755,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("trie_insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":79
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":79
  * cdef _Trie_Node* trie_insert(_Trie_Node* node, int val):
  *     cdef _Trie_Edge** cur
  *     cur = &node.root             # <<<<<<<<<<<<<<
@@ -29090,7 +28764,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
  */
   __pyx_v_cur = (&__pyx_v_node->root);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":80
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":80
  *     cdef _Trie_Edge** cur
  *     cur = &node.root
  *     while cur[0] != NULL and cur[0].val != val:             # <<<<<<<<<<<<<<
@@ -29107,7 +28781,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
     }
     if (!__pyx_t_3) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":81
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":81
  *     cur = &node.root
  *     while cur[0] != NULL and cur[0].val != val:
  *         if val > cur[0].val:             # <<<<<<<<<<<<<<
@@ -29117,7 +28791,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
     __pyx_t_3 = (__pyx_v_val > (__pyx_v_cur[0])->val);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":82
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":82
  *     while cur[0] != NULL and cur[0].val != val:
  *         if val > cur[0].val:
  *             cur = &cur[0].bigger             # <<<<<<<<<<<<<<
@@ -29128,7 +28802,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
       goto __pyx_L5;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":83
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":83
  *         if val > cur[0].val:
  *             cur = &cur[0].bigger
  *         elif val < cur[0].val:             # <<<<<<<<<<<<<<
@@ -29138,7 +28812,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
     __pyx_t_3 = (__pyx_v_val < (__pyx_v_cur[0])->val);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":84
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":84
  *             cur = &cur[0].bigger
  *         elif val < cur[0].val:
  *             cur = &cur[0].smaller             # <<<<<<<<<<<<<<
@@ -29151,7 +28825,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":85
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":85
  *         elif val < cur[0].val:
  *             cur = &cur[0].smaller
  *     if cur[0] == NULL:             # <<<<<<<<<<<<<<
@@ -29161,7 +28835,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
   __pyx_t_3 = ((__pyx_v_cur[0]) == NULL);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":86
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":86
  *             cur = &cur[0].smaller
  *     if cur[0] == NULL:
  *         cur[0] = new_trie_edge(val)             # <<<<<<<<<<<<<<
@@ -29173,7 +28847,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
   }
   __pyx_L6:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":87
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":87
  *     if cur[0] == NULL:
  *         cur[0] = new_trie_edge(val)
  *     return cur[0].node             # <<<<<<<<<<<<<<
@@ -29189,7 +28863,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_trie_insert(struct __pyx_t_3
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":89
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":89
  *     return cur[0].node
  * 
  * cdef trie_node_to_map(_Trie_Node* node, result, prefix, int include_zeros):             # <<<<<<<<<<<<<<
@@ -29209,7 +28883,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("trie_node_to_map", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":92
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":92
  *     cdef IntList arr
  * 
  *     if include_zeros or node.arr_len > 0:             # <<<<<<<<<<<<<<
@@ -29224,7 +28898,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
   }
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":93
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":93
  * 
  *     if include_zeros or node.arr_len > 0:
  *         arr = IntList()             # <<<<<<<<<<<<<<
@@ -29236,7 +28910,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
     __pyx_v_arr = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_3);
     __pyx_t_3 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":94
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":94
  *     if include_zeros or node.arr_len > 0:
  *         arr = IntList()
  *         free(arr.arr)             # <<<<<<<<<<<<<<
@@ -29245,7 +28919,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
  */
     free(__pyx_v_arr->arr);
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":95
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":95
  *         arr = IntList()
  *         free(arr.arr)
  *         arr.arr = <int*> malloc(node.arr_len * sizeof(int))             # <<<<<<<<<<<<<<
@@ -29254,7 +28928,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
  */
     __pyx_v_arr->arr = ((int *)malloc((__pyx_v_node->arr_len * (sizeof(int)))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":96
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":96
  *         free(arr.arr)
  *         arr.arr = <int*> malloc(node.arr_len * sizeof(int))
  *         memcpy(arr.arr, node.arr, node.arr_len * sizeof(int))             # <<<<<<<<<<<<<<
@@ -29263,7 +28937,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
  */
     memcpy(__pyx_v_arr->arr, __pyx_v_node->arr, (__pyx_v_node->arr_len * (sizeof(int))));
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":97
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":97
  *         arr.arr = <int*> malloc(node.arr_len * sizeof(int))
  *         memcpy(arr.arr, node.arr, node.arr_len * sizeof(int))
  *         arr.len = node.arr_len             # <<<<<<<<<<<<<<
@@ -29272,7 +28946,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
  */
     __pyx_v_arr->len = __pyx_v_node->arr_len;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":98
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":98
  *         memcpy(arr.arr, node.arr, node.arr_len * sizeof(int))
  *         arr.len = node.arr_len
  *         arr.size = node.arr_len             # <<<<<<<<<<<<<<
@@ -29281,7 +28955,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
  */
     __pyx_v_arr->size = __pyx_v_node->arr_len;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":99
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":99
  *         arr.len = node.arr_len
  *         arr.size = node.arr_len
  *         result[prefix] = arr             # <<<<<<<<<<<<<<
@@ -29293,7 +28967,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":100
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":100
  *         arr.size = node.arr_len
  *         result[prefix] = arr
  *     trie_edge_to_map(node.root, result, prefix, include_zeros)             # <<<<<<<<<<<<<<
@@ -29317,7 +28991,7 @@ static PyObject *__pyx_f_3_sa_trie_node_to_map(struct __pyx_t_3_sa__Trie_Node *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":102
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":102
  *     trie_edge_to_map(node.root, result, prefix, include_zeros)
  * 
  * cdef trie_edge_to_map(_Trie_Edge* edge, result, prefix, int include_zeros):             # <<<<<<<<<<<<<<
@@ -29337,7 +29011,7 @@ static PyObject *__pyx_f_3_sa_trie_edge_to_map(struct __pyx_t_3_sa__Trie_Edge *_
   __Pyx_RefNannySetupContext("trie_edge_to_map", 0);
   __Pyx_INCREF(__pyx_v_prefix);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":103
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":103
  * 
  * cdef trie_edge_to_map(_Trie_Edge* edge, result, prefix, int include_zeros):
  *     if edge != NULL:             # <<<<<<<<<<<<<<
@@ -29347,7 +29021,7 @@ static PyObject *__pyx_f_3_sa_trie_edge_to_map(struct __pyx_t_3_sa__Trie_Edge *_
   __pyx_t_1 = (__pyx_v_edge != NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":104
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":104
  * cdef trie_edge_to_map(_Trie_Edge* edge, result, prefix, int include_zeros):
  *     if edge != NULL:
  *         trie_edge_to_map(edge.smaller, result, prefix, include_zeros)             # <<<<<<<<<<<<<<
@@ -29358,7 +29032,7 @@ static PyObject *__pyx_f_3_sa_trie_edge_to_map(struct __pyx_t_3_sa__Trie_Edge *_
     __Pyx_GOTREF(__pyx_t_2);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":105
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":105
  *     if edge != NULL:
  *         trie_edge_to_map(edge.smaller, result, prefix, include_zeros)
  *         trie_edge_to_map(edge.bigger, result, prefix, include_zeros)             # <<<<<<<<<<<<<<
@@ -29369,7 +29043,7 @@ static PyObject *__pyx_f_3_sa_trie_edge_to_map(struct __pyx_t_3_sa__Trie_Edge *_
     __Pyx_GOTREF(__pyx_t_2);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":106
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":106
  *         trie_edge_to_map(edge.smaller, result, prefix, include_zeros)
  *         trie_edge_to_map(edge.bigger, result, prefix, include_zeros)
  *         prefix = prefix + (edge.val,)             # <<<<<<<<<<<<<<
@@ -29390,7 +29064,7 @@ static PyObject *__pyx_f_3_sa_trie_edge_to_map(struct __pyx_t_3_sa__Trie_Edge *_
     __pyx_v_prefix = __pyx_t_2;
     __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":107
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":107
  *         trie_edge_to_map(edge.bigger, result, prefix, include_zeros)
  *         prefix = prefix + (edge.val,)
  *         trie_node_to_map(edge.node, result, prefix, include_zeros)             # <<<<<<<<<<<<<<
@@ -29422,11 +29096,11 @@ static PyObject *__pyx_f_3_sa_trie_edge_to_map(struct __pyx_t_3_sa__Trie_Edge *_
 static int __pyx_pw_3_sa_7TrieMap_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
 static int __pyx_pw_3_sa_7TrieMap_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   int __pyx_v_alphabet_size;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__alphabet_size,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__alphabet_size,0};
     PyObject* values[1] = {0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -29439,7 +29113,8 @@ static int __pyx_pw_3_sa_7TrieMap_1__cinit__(PyObject *__pyx_v_self, PyObject *_
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__alphabet_size)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__alphabet_size);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
       }
       if (unlikely(kw_args > 0)) {
@@ -29465,7 +29140,7 @@ static int __pyx_pw_3_sa_7TrieMap_1__cinit__(PyObject *__pyx_v_self, PyObject *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":114
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":114
  *     cdef int V
  * 
  *     def __cinit__(self, int alphabet_size):             # <<<<<<<<<<<<<<
@@ -29478,7 +29153,7 @@ static int __pyx_pf_3_sa_7TrieMap___cinit__(struct __pyx_obj_3_sa_TrieMap *__pyx
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":115
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":115
  * 
  *     def __cinit__(self, int alphabet_size):
  *         self.V = alphabet_size             # <<<<<<<<<<<<<<
@@ -29487,7 +29162,7 @@ static int __pyx_pf_3_sa_7TrieMap___cinit__(struct __pyx_obj_3_sa_TrieMap *__pyx
  */
   __pyx_v_self->V = __pyx_v_alphabet_size;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":116
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":116
  *     def __cinit__(self, int alphabet_size):
  *         self.V = alphabet_size
  *         self.root = <_Trie_Node**> malloc(self.V * sizeof(_Trie_Node*))             # <<<<<<<<<<<<<<
@@ -29496,7 +29171,7 @@ static int __pyx_pf_3_sa_7TrieMap___cinit__(struct __pyx_obj_3_sa_TrieMap *__pyx
  */
   __pyx_v_self->root = ((struct __pyx_t_3_sa__Trie_Node **)malloc((__pyx_v_self->V * (sizeof(struct __pyx_t_3_sa__Trie_Node *)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":117
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":117
  *         self.V = alphabet_size
  *         self.root = <_Trie_Node**> malloc(self.V * sizeof(_Trie_Node*))
  *         memset(self.root, 0, self.V * sizeof(_Trie_Node*))             # <<<<<<<<<<<<<<
@@ -29519,7 +29194,7 @@ static void __pyx_pw_3_sa_7TrieMap_3__dealloc__(PyObject *__pyx_v_self) {
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":120
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":120
  * 
  * 
  *     def __dealloc__(self):             # <<<<<<<<<<<<<<
@@ -29538,7 +29213,7 @@ static void __pyx_pf_3_sa_7TrieMap_2__dealloc__(struct __pyx_obj_3_sa_TrieMap *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__dealloc__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":122
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":122
  *     def __dealloc__(self):
  *         cdef int i
  *         for i from 0 <= i < self.V:             # <<<<<<<<<<<<<<
@@ -29548,7 +29223,7 @@ static void __pyx_pf_3_sa_7TrieMap_2__dealloc__(struct __pyx_obj_3_sa_TrieMap *_
   __pyx_t_1 = __pyx_v_self->V;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":123
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":123
  *         cdef int i
  *         for i from 0 <= i < self.V:
  *             if self.root[i] != NULL:             # <<<<<<<<<<<<<<
@@ -29558,7 +29233,7 @@ static void __pyx_pf_3_sa_7TrieMap_2__dealloc__(struct __pyx_obj_3_sa_TrieMap *_
     __pyx_t_2 = ((__pyx_v_self->root[__pyx_v_i]) != NULL);
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":124
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":124
  *         for i from 0 <= i < self.V:
  *             if self.root[i] != NULL:
  *                 free_trie_node(self.root[i])             # <<<<<<<<<<<<<<
@@ -29573,7 +29248,7 @@ static void __pyx_pf_3_sa_7TrieMap_2__dealloc__(struct __pyx_obj_3_sa_TrieMap *_
     __pyx_L5:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":125
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":125
  *             if self.root[i] != NULL:
  *                 free_trie_node(self.root[i])
  *         free(self.root)             # <<<<<<<<<<<<<<
@@ -29601,7 +29276,7 @@ static PyObject *__pyx_pw_3_sa_7TrieMap_5insert(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":128
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":128
  * 
  * 
  *     def insert(self, pattern):             # <<<<<<<<<<<<<<
@@ -29624,7 +29299,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_4insert(struct __pyx_obj_3_sa_TrieMap *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":131
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":131
  *         cdef int* p
  *         cdef int i, l
  *         l = len(pattern)             # <<<<<<<<<<<<<<
@@ -29634,7 +29309,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_4insert(struct __pyx_obj_3_sa_TrieMap *_
   __pyx_t_1 = PyObject_Length(__pyx_v_pattern); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 131; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_l = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":132
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":132
  *         cdef int i, l
  *         l = len(pattern)
  *         p = <int*> malloc(l*sizeof(int))             # <<<<<<<<<<<<<<
@@ -29643,7 +29318,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_4insert(struct __pyx_obj_3_sa_TrieMap *_
  */
   __pyx_v_p = ((int *)malloc((__pyx_v_l * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":133
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":133
  *         l = len(pattern)
  *         p = <int*> malloc(l*sizeof(int))
  *         for i from 0 <= i < l:             # <<<<<<<<<<<<<<
@@ -29653,7 +29328,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_4insert(struct __pyx_obj_3_sa_TrieMap *_
   __pyx_t_2 = __pyx_v_l;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":134
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":134
  *         p = <int*> malloc(l*sizeof(int))
  *         for i from 0 <= i < l:
  *             p[i] = pattern[i]             # <<<<<<<<<<<<<<
@@ -29667,7 +29342,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_4insert(struct __pyx_obj_3_sa_TrieMap *_
     (__pyx_v_p[__pyx_v_i]) = __pyx_t_4;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":135
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":135
  *         for i from 0 <= i < l:
  *             p[i] = pattern[i]
  *         self._insert(p,l)             # <<<<<<<<<<<<<<
@@ -29676,7 +29351,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_4insert(struct __pyx_obj_3_sa_TrieMap *_
  */
   ((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_self->__pyx_vtab)->_insert(__pyx_v_self, __pyx_v_p, __pyx_v_l);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":136
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":136
  *             p[i] = pattern[i]
  *         self._insert(p,l)
  *         free(p)             # <<<<<<<<<<<<<<
@@ -29697,7 +29372,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_4insert(struct __pyx_obj_3_sa_TrieMap *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":139
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":139
  * 
  * 
  *     cdef _Trie_Node* _insert(self, int* pattern, int pattern_len):             # <<<<<<<<<<<<<<
@@ -29714,7 +29389,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__insert(struct __py
   int __pyx_t_2;
   __Pyx_RefNannySetupContext("_insert", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":142
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":142
  *         cdef int i
  *         cdef _Trie_Node* node
  *         if self.root[pattern[0]] == NULL:             # <<<<<<<<<<<<<<
@@ -29724,7 +29399,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__insert(struct __py
   __pyx_t_1 = ((__pyx_v_self->root[(__pyx_v_pattern[0])]) == NULL);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":143
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":143
  *         cdef _Trie_Node* node
  *         if self.root[pattern[0]] == NULL:
  *             self.root[pattern[0]] = new_trie_node()             # <<<<<<<<<<<<<<
@@ -29736,7 +29411,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__insert(struct __py
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":144
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":144
  *         if self.root[pattern[0]] == NULL:
  *             self.root[pattern[0]] = new_trie_node()
  *         node = self.root[pattern[0]]             # <<<<<<<<<<<<<<
@@ -29745,7 +29420,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__insert(struct __py
  */
   __pyx_v_node = (__pyx_v_self->root[(__pyx_v_pattern[0])]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":145
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":145
  *             self.root[pattern[0]] = new_trie_node()
  *         node = self.root[pattern[0]]
  *         for i from 1 <= i < pattern_len:             # <<<<<<<<<<<<<<
@@ -29755,7 +29430,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__insert(struct __py
   __pyx_t_2 = __pyx_v_pattern_len;
   for (__pyx_v_i = 1; __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":146
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":146
  *         node = self.root[pattern[0]]
  *         for i from 1 <= i < pattern_len:
  *             node = trie_insert(node, pattern[i])             # <<<<<<<<<<<<<<
@@ -29765,7 +29440,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__insert(struct __py
     __pyx_v_node = __pyx_f_3_sa_trie_insert(__pyx_v_node, (__pyx_v_pattern[__pyx_v_i]));
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":147
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":147
  *         for i from 1 <= i < pattern_len:
  *             node = trie_insert(node, pattern[i])
  *         return node             # <<<<<<<<<<<<<<
@@ -29792,7 +29467,7 @@ static PyObject *__pyx_pw_3_sa_7TrieMap_7contains(PyObject *__pyx_v_self, PyObje
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":149
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":149
  *         return node
  * 
  *     def contains(self, pattern):             # <<<<<<<<<<<<<<
@@ -29817,7 +29492,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("contains", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":153
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":153
  *         cdef int i, l
  *         cdef _Trie_Node* node
  *         l = len(pattern)             # <<<<<<<<<<<<<<
@@ -29827,7 +29502,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
   __pyx_t_1 = PyObject_Length(__pyx_v_pattern); if (unlikely(__pyx_t_1 == -1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 153; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_l = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":154
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":154
  *         cdef _Trie_Node* node
  *         l = len(pattern)
  *         p = <int*> malloc(l*sizeof(int))             # <<<<<<<<<<<<<<
@@ -29836,7 +29511,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
  */
   __pyx_v_p = ((int *)malloc((__pyx_v_l * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":155
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":155
  *         l = len(pattern)
  *         p = <int*> malloc(l*sizeof(int))
  *         for i from 0 <= i < l:             # <<<<<<<<<<<<<<
@@ -29846,7 +29521,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
   __pyx_t_2 = __pyx_v_l;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_2; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":156
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":156
  *         p = <int*> malloc(l*sizeof(int))
  *         for i from 0 <= i < l:
  *             p[i] = pattern[i]             # <<<<<<<<<<<<<<
@@ -29860,7 +29535,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
     (__pyx_v_p[__pyx_v_i]) = __pyx_t_4;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":157
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":157
  *         for i from 0 <= i < l:
  *             p[i] = pattern[i]
  *         node = self._contains(p,l)             # <<<<<<<<<<<<<<
@@ -29869,7 +29544,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
  */
   __pyx_v_node = ((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_self->__pyx_vtab)->_contains(__pyx_v_self, __pyx_v_p, __pyx_v_l);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":158
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":158
  *             p[i] = pattern[i]
  *         node = self._contains(p,l)
  *         free(p)             # <<<<<<<<<<<<<<
@@ -29878,7 +29553,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
  */
   free(__pyx_v_p);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":159
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":159
  *         node = self._contains(p,l)
  *         free(p)
  *         if node == NULL:             # <<<<<<<<<<<<<<
@@ -29888,7 +29563,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
   __pyx_t_5 = (__pyx_v_node == NULL);
   if (__pyx_t_5) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":160
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":160
  *         free(p)
  *         if node == NULL:
  *             return False             # <<<<<<<<<<<<<<
@@ -29905,7 +29580,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":162
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":162
  *             return False
  *         else:
  *             return True             # <<<<<<<<<<<<<<
@@ -29933,7 +29608,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_6contains(struct __pyx_obj_3_sa_TrieMap
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":164
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":164
  *             return True
  * 
  *     cdef _Trie_Node* _contains(self, int* pattern, int pattern_len):             # <<<<<<<<<<<<<<
@@ -29951,7 +29626,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__contains(struct __
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("_contains", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":167
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":167
  *         cdef int i
  *         cdef _Trie_Node* node
  *         node = self.root[pattern[0]]             # <<<<<<<<<<<<<<
@@ -29960,7 +29635,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__contains(struct __
  */
   __pyx_v_node = (__pyx_v_self->root[(__pyx_v_pattern[0])]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":168
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":168
  *         cdef _Trie_Node* node
  *         node = self.root[pattern[0]]
  *         i = 1             # <<<<<<<<<<<<<<
@@ -29969,7 +29644,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__contains(struct __
  */
   __pyx_v_i = 1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":169
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":169
  *         node = self.root[pattern[0]]
  *         i = 1
  *         while node != NULL and i < pattern_len:             # <<<<<<<<<<<<<<
@@ -29986,7 +29661,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__contains(struct __
     }
     if (!__pyx_t_3) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":170
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":170
  *         i = 1
  *         while node != NULL and i < pattern_len:
  *             node = trie_find(node, pattern[i])             # <<<<<<<<<<<<<<
@@ -29995,7 +29670,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__contains(struct __
  */
     __pyx_v_node = __pyx_f_3_sa_trie_find(__pyx_v_node, (__pyx_v_pattern[__pyx_v_i]));
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":171
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":171
  *         while node != NULL and i < pattern_len:
  *             node = trie_find(node, pattern[i])
  *             i = i+1             # <<<<<<<<<<<<<<
@@ -30005,7 +29680,7 @@ static struct __pyx_t_3_sa__Trie_Node *__pyx_f_3_sa_7TrieMap__contains(struct __
     __pyx_v_i = (__pyx_v_i + 1);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":172
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":172
  *             node = trie_find(node, pattern[i])
  *             i = i+1
  *         return node             # <<<<<<<<<<<<<<
@@ -30032,7 +29707,7 @@ static PyObject *__pyx_pw_3_sa_7TrieMap_9toMap(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":174
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":174
  *         return node
  * 
  *     def toMap(self, flag):             # <<<<<<<<<<<<<<
@@ -30055,7 +29730,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("toMap", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":177
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":177
  *         cdef int i, include_zeros
  * 
  *         if flag:             # <<<<<<<<<<<<<<
@@ -30065,7 +29740,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
   __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_v_flag); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 177; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":178
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":178
  * 
  *         if flag:
  *             include_zeros=1             # <<<<<<<<<<<<<<
@@ -30077,7 +29752,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":180
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":180
  *             include_zeros=1
  *         else:
  *             include_zeros=0             # <<<<<<<<<<<<<<
@@ -30088,7 +29763,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":181
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":181
  *         else:
  *             include_zeros=0
  *         result = {}             # <<<<<<<<<<<<<<
@@ -30100,7 +29775,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
   __pyx_v_result = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":182
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":182
  *             include_zeros=0
  *         result = {}
  *         for i from 0 <= i < self.V:             # <<<<<<<<<<<<<<
@@ -30110,7 +29785,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
   __pyx_t_3 = __pyx_v_self->V;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":183
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":183
  *         result = {}
  *         for i from 0 <= i < self.V:
  *             if self.root[i] != NULL:             # <<<<<<<<<<<<<<
@@ -30120,7 +29795,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
     __pyx_t_1 = ((__pyx_v_self->root[__pyx_v_i]) != NULL);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":184
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":184
  *         for i from 0 <= i < self.V:
  *             if self.root[i] != NULL:
  *                 trie_node_to_map(self.root[i], result, (i,), include_zeros)             # <<<<<<<<<<<<<<
@@ -30143,7 +29818,7 @@ static PyObject *__pyx_pf_3_sa_7TrieMap_8toMap(struct __pyx_obj_3_sa_TrieMap *__
     __pyx_L6:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":185
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":185
  *             if self.root[i] != NULL:
  *                 trie_node_to_map(self.root[i], result, (i,), include_zeros)
  *         return result             # <<<<<<<<<<<<<<
@@ -30181,14 +29856,14 @@ static int __pyx_pw_3_sa_14Precomputation_1__cinit__(PyObject *__pyx_v_self, PyO
   PyObject *__pyx_v_max_nonterminals = 0;
   PyObject *__pyx_v_train_max_initial_size = 0;
   PyObject *__pyx_v_train_min_gap_size = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__fsarray,&__pyx_n_s__from_stats,&__pyx_n_s__from_binary,&__pyx_n_s__precompute_rank,&__pyx_n_s_70,&__pyx_n_s__max_length,&__pyx_n_s__max_nonterminals,&__pyx_n_s_71,&__pyx_n_s__train_min_gap_size,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__fsarray,&__pyx_n_s__from_stats,&__pyx_n_s__from_binary,&__pyx_n_s__precompute_rank,&__pyx_n_s_70,&__pyx_n_s__max_length,&__pyx_n_s__max_nonterminals,&__pyx_n_s_71,&__pyx_n_s__train_min_gap_size,0};
     PyObject* values[9] = {0,0,0,0,0,0,0,0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":200
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":200
  *     cdef write_map(self, m, FILE* f)
  * 
  *     def __cinit__(self, fsarray=None, from_stats=None, from_binary=None,             # <<<<<<<<<<<<<<
@@ -30322,7 +29997,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":204
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":204
  *             max_length=5, max_nonterminals=2,
  *             train_max_initial_size=10, train_min_gap_size=2):
  *         self.precompute_rank = precompute_rank             # <<<<<<<<<<<<<<
@@ -30332,7 +30007,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_precompute_rank); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 204; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->precompute_rank = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":205
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":205
  *             train_max_initial_size=10, train_min_gap_size=2):
  *         self.precompute_rank = precompute_rank
  *         self.precompute_secondary_rank = precompute_secondary_rank             # <<<<<<<<<<<<<<
@@ -30342,7 +30017,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_precompute_secondary_rank); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 205; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->precompute_secondary_rank = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":206
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":206
  *         self.precompute_rank = precompute_rank
  *         self.precompute_secondary_rank = precompute_secondary_rank
  *         self.max_length = max_length             # <<<<<<<<<<<<<<
@@ -30352,7 +30027,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_max_length); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 206; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->max_length = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":207
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":207
  *         self.precompute_secondary_rank = precompute_secondary_rank
  *         self.max_length = max_length
  *         self.max_nonterminals = max_nonterminals             # <<<<<<<<<<<<<<
@@ -30362,7 +30037,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_max_nonterminals); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 207; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->max_nonterminals = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":208
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":208
  *         self.max_length = max_length
  *         self.max_nonterminals = max_nonterminals
  *         self.train_max_initial_size = train_max_initial_size             # <<<<<<<<<<<<<<
@@ -30372,7 +30047,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_train_max_initial_size); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 208; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->train_max_initial_size = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":209
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":209
  *         self.max_nonterminals = max_nonterminals
  *         self.train_max_initial_size = train_max_initial_size
  *         self.train_min_gap_size = train_min_gap_size             # <<<<<<<<<<<<<<
@@ -30382,7 +30057,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_train_min_gap_size); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 209; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->train_min_gap_size = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":210
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":210
  *         self.train_max_initial_size = train_max_initial_size
  *         self.train_min_gap_size = train_min_gap_size
  *         if from_binary:             # <<<<<<<<<<<<<<
@@ -30392,7 +30067,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_from_binary); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 210; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":211
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":211
  *         self.train_min_gap_size = train_min_gap_size
  *         if from_binary:
  *             self.read_binary(from_binary)             # <<<<<<<<<<<<<<
@@ -30414,7 +30089,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":212
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":212
  *         if from_binary:
  *             self.read_binary(from_binary)
  *         elif from_stats:             # <<<<<<<<<<<<<<
@@ -30424,7 +30099,7 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_from_stats); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":213
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":213
  *             self.read_binary(from_binary)
  *         elif from_stats:
  *             self.precompute(from_stats, fsarray)             # <<<<<<<<<<<<<<
@@ -30484,7 +30159,7 @@ static PyObject *__pyx_pw_3_sa_14Precomputation_3read_binary(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":216
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":216
  * 
  * 
  *     def read_binary(self, char* filename):             # <<<<<<<<<<<<<<
@@ -30502,7 +30177,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("read_binary", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":218
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":218
  *     def read_binary(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "r")             # <<<<<<<<<<<<<<
@@ -30511,7 +30186,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__r);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":219
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":219
  *         cdef FILE* f
  *         f = fopen(filename, "r")
  *         fread(&(self.precompute_rank), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30520,7 +30195,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
  */
   fread((&__pyx_v_self->precompute_rank), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":220
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":220
  *         f = fopen(filename, "r")
  *         fread(&(self.precompute_rank), sizeof(int), 1, f)
  *         fread(&(self.precompute_secondary_rank), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30529,7 +30204,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
  */
   fread((&__pyx_v_self->precompute_secondary_rank), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":221
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":221
  *         fread(&(self.precompute_rank), sizeof(int), 1, f)
  *         fread(&(self.precompute_secondary_rank), sizeof(int), 1, f)
  *         fread(&(self.max_length), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30538,7 +30213,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
  */
   fread((&__pyx_v_self->max_length), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":222
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":222
  *         fread(&(self.precompute_secondary_rank), sizeof(int), 1, f)
  *         fread(&(self.max_length), sizeof(int), 1, f)
  *         fread(&(self.max_nonterminals), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30547,7 +30222,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
  */
   fread((&__pyx_v_self->max_nonterminals), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":223
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":223
  *         fread(&(self.max_length), sizeof(int), 1, f)
  *         fread(&(self.max_nonterminals), sizeof(int), 1, f)
  *         fread(&(self.train_max_initial_size), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30556,7 +30231,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
  */
   fread((&__pyx_v_self->train_max_initial_size), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":224
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":224
  *         fread(&(self.max_nonterminals), sizeof(int), 1, f)
  *         fread(&(self.train_max_initial_size), sizeof(int), 1, f)
  *         fread(&(self.train_min_gap_size), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30565,7 +30240,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
  */
   fread((&__pyx_v_self->train_min_gap_size), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":225
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":225
  *         fread(&(self.train_max_initial_size), sizeof(int), 1, f)
  *         fread(&(self.train_min_gap_size), sizeof(int), 1, f)
  *         self.precomputed_index = self.read_map(f)             # <<<<<<<<<<<<<<
@@ -30580,7 +30255,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
   __pyx_v_self->precomputed_index = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":226
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":226
  *         fread(&(self.train_min_gap_size), sizeof(int), 1, f)
  *         self.precomputed_index = self.read_map(f)
  *         self.precomputed_collocations = self.read_map(f)             # <<<<<<<<<<<<<<
@@ -30595,7 +30270,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_
   __pyx_v_self->precomputed_collocations = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":227
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":227
  *         self.precomputed_index = self.read_map(f)
  *         self.precomputed_collocations = self.read_map(f)
  *         fclose(f)             # <<<<<<<<<<<<<<
@@ -30637,7 +30312,7 @@ static PyObject *__pyx_pw_3_sa_14Precomputation_5write_binary(PyObject *__pyx_v_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":230
+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":230
  * 
  * 
  *     def write_binary(self, char* filename):             # <<<<<<<<<<<<<<
@@ -30656,7 +30331,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("write_binary", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":232
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":232
  *     def write_binary(self, char* filename):
  *         cdef FILE* f
  *         f = fopen(filename, "w")             # <<<<<<<<<<<<<<
@@ -30665,7 +30340,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__w);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":233
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":233
  *         cdef FILE* f
  *         f = fopen(filename, "w")
  *         fwrite(&(self.precompute_rank), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30674,7 +30349,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
  */
   fwrite((&__pyx_v_self->precompute_rank), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":234
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":234
  *         f = fopen(filename, "w")
  *         fwrite(&(self.precompute_rank), sizeof(int), 1, f)
  *         fwrite(&(self.precompute_secondary_rank), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30683,7 +30358,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
  */
   fwrite((&__pyx_v_self->precompute_secondary_rank), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":235
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":235
  *         fwrite(&(self.precompute_rank), sizeof(int), 1, f)
  *         fwrite(&(self.precompute_secondary_rank), sizeof(int), 1, f)
  *         fwrite(&(self.max_length), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30692,7 +30367,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
  */
   fwrite((&__pyx_v_self->max_length), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":236
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":236
  *         fwrite(&(self.precompute_secondary_rank), sizeof(int), 1, f)
  *         fwrite(&(self.max_length), sizeof(int), 1, f)
  *         fwrite(&(self.max_nonterminals), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30701,7 +30376,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
  */
   fwrite((&__pyx_v_self->max_nonterminals), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":237
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":237
  *         fwrite(&(self.max_length), sizeof(int), 1, f)
  *         fwrite(&(self.max_nonterminals), sizeof(int), 1, f)
  *         fwrite(&(self.train_max_initial_size), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30710,7 +30385,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
  */
   fwrite((&__pyx_v_self->train_max_initial_size), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":238
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":238
  *         fwrite(&(self.max_nonterminals), sizeof(int), 1, f)
  *         fwrite(&(self.train_max_initial_size), sizeof(int), 1, f)
  *         fwrite(&(self.train_min_gap_size), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -30719,7 +30394,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3
  */
   fwrite((&__pyx_v_self->train_min_gap_size), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":239
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+/* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":260
  * 
  * 
  *     cdef read_map(self, FILE* f):             # <<<<<<<<<<<<<<
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":264
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":264
  *         cdef IntList arr
  * 
  *         m = {}             # <<<<<<<<<<<<<<
@@ -31015,7 +30744,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
   __pyx_v_m = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":265
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":265
  * 
  *         m = {}
  *         fread(&(N), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -31024,7 +30753,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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   fread((&__pyx_v_N), (sizeof(int)), 1, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":266
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":266
  *         m = {}
  *         fread(&(N), sizeof(int), 1, f)
  *         for j from 0 <= j < N:             # <<<<<<<<<<<<<<
@@ -31034,7 +30763,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":267
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":267
  *         fread(&(N), sizeof(int), 1, f)
  *         for j from 0 <= j < N:
  *             fread(&(i), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -31043,7 +30772,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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     fread((&__pyx_v_i), (sizeof(int)), 1, __pyx_v_f);
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":268
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":268
  *         for j from 0 <= j < N:
  *             fread(&(i), sizeof(int), 1, f)
  *             key = ()             # <<<<<<<<<<<<<<
@@ -31054,7 +30783,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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     __pyx_v_key = __pyx_empty_tuple;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":269
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":269
  *             fread(&(i), sizeof(int), 1, f)
  *             key = ()
  *             for k from 0 <= k < i:             # <<<<<<<<<<<<<<
@@ -31064,7 +30793,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":270
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":270
  *             key = ()
  *             for k from 0 <= k < i:
  *                 fread(&(word_id), sizeof(int), 1, f)             # <<<<<<<<<<<<<<
@@ -31073,7 +30802,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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       fread((&__pyx_v_word_id), (sizeof(int)), 1, __pyx_v_f);
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":271
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":271
  *             for k from 0 <= k < i:
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  *                 key = key + (word_id,)             # <<<<<<<<<<<<<<
@@ -31095,7 +30824,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
       __pyx_t_1 = 0;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":272
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":272
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  *                 key = key + (word_id,)
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@@ -31108,7 +30837,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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     __pyx_t_1 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":273
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":273
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  *             arr = IntList()
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@@ -31117,7 +30846,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":274
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":274
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  *             arr.read_handle(f)
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@@ -31127,7 +30856,7 @@ static PyObject *__pyx_f_3_sa_14Precomputation_read_map(CYTHON_UNUSED struct __p
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   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":275
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":275
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 static PyObject *__pyx_pw_3_sa_14Precomputation_7precompute(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   PyObject *__pyx_v_stats = 0;
   struct __pyx_obj_3_sa_SuffixArray *__pyx_v_sarray = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__stats,&__pyx_n_s__sarray,0};
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@@ -31178,10 +30907,12 @@ static PyObject *__pyx_pw_3_sa_14Precomputation_7precompute(PyObject *__pyx_v_se
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       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__stats)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__stats);
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-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__sarray)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__sarray);
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":278
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-  PyObject *(*__pyx_t_4)(PyObject *);
-  PyObject *__pyx_t_5 = NULL;
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-  Py_ssize_t __pyx_t_12;
-  int __pyx_t_13;
-  Py_ssize_t __pyx_t_14;
-  int __pyx_t_15;
+  PyObject *__pyx_t_10 = NULL;
+  PyObject *(*__pyx_t_11)(PyObject *);
+  int __pyx_t_12;
+  Py_ssize_t __pyx_t_13;
+  int __pyx_t_14;
+  Py_ssize_t __pyx_t_15;
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   int __pyx_t_17;
   int __pyx_t_18;
   int __pyx_t_19;
-  PyObject *(*__pyx_t_20)(PyObject *);
+  int __pyx_t_20;
+  PyObject *(*__pyx_t_21)(PyObject *);
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":280
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":280
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   __pyx_v_darray = __pyx_v_sarray->darray;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":285
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":285
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  * 
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@@ -31321,7 +31053,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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   __pyx_v_data = __pyx_v_darray->data;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":287
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":287
  *         data = darray.data
  * 
  *         frequent_patterns = TrieMap(len(darray.id2word))             # <<<<<<<<<<<<<<
@@ -31345,7 +31077,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":288
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":288
  * 
  *         frequent_patterns = TrieMap(len(darray.id2word))
  *         super_frequent_patterns = TrieMap(len(darray.id2word))             # <<<<<<<<<<<<<<
@@ -31369,7 +31101,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":289
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":289
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@@ -31393,7 +31125,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":291
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":291
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":292
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":292
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  *         I_set = set()
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   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":293
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":293
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  *         J_set = set()
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":294
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":294
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  *         J2_set = set()
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   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":295
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":295
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  *         IJ_set = set()
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":297
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":297
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":298
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":298
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+  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+  __pyx_v_start_time = __pyx_t_4;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":300
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":300
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-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":301
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":301
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-    __pyx_t_4 = Py_TYPE(__pyx_t_3)->tp_iternext;
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-      __Pyx_GOTREF(__pyx_t_7);
+      __pyx_t_6 = PyObject_GetAttr(((PyObject *)__pyx_v_super_frequent_patterns), __pyx_n_s__insert); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __Pyx_GOTREF(__pyx_t_8);
       __Pyx_INCREF(__pyx_v_phrase);
-      PyTuple_SET_ITEM(__pyx_t_7, 0, __pyx_v_phrase);
+      PyTuple_SET_ITEM(__pyx_t_8, 0, __pyx_v_phrase);
       __Pyx_GIVEREF(__pyx_v_phrase);
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-      __Pyx_DECREF(((PyObject *)__pyx_t_7)); __pyx_t_7 = 0;
-      __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
+      __pyx_t_9 = PyObject_Call(__pyx_t_6, ((PyObject *)__pyx_t_8), NULL); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_9);
+      __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
+      __Pyx_DECREF(((PyObject *)__pyx_t_8)); __pyx_t_8 = 0;
+      __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":310
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":310
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  *                 super_frequent_patterns.insert(phrase)
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  *         queue = IntList(increment=1000)
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-      __pyx_t_15 = PySet_Add(__pyx_v_J_set, __pyx_v_phrase); if (unlikely(__pyx_t_15 == -1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_16 = PySet_Add(__pyx_v_J_set, __pyx_v_phrase); if (unlikely(__pyx_t_16 == -1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":312
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":312
  *                 J_set.add(phrase)
  * 
  *         queue = IntList(increment=1000)             # <<<<<<<<<<<<<<
  * 
  *         logger.info("    Computing inverted indexes...")
  */
-  __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 312; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __Pyx_GOTREF(((PyObject *)__pyx_t_1));
-  if (PyDict_SetItem(__pyx_t_1, ((PyObject *)__pyx_n_s__increment), __pyx_int_1000) < 0) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 312; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __pyx_t_3 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_1)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 312; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __Pyx_GOTREF(__pyx_t_3);
-  __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
-  __pyx_v_queue = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_3);
-  __pyx_t_3 = 0;
+  __pyx_t_3 = PyDict_New(); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 312; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(((PyObject *)__pyx_t_3));
+  if (PyDict_SetItem(__pyx_t_3, ((PyObject *)__pyx_n_s__increment), __pyx_int_1000) < 0) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 312; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_3)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 312; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
+  __Pyx_DECREF(((PyObject *)__pyx_t_3)); __pyx_t_3 = 0;
+  __pyx_v_queue = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
+  __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":314
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":314
  *         queue = IntList(increment=1000)
  * 
  *         logger.info("    Computing inverted indexes...")             # <<<<<<<<<<<<<<
  *         N = len(data)
  *         for i from 0 <= i < N:
  */
-  __pyx_t_3 = __Pyx_GetName(__pyx_m, __pyx_n_s__logger); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 314; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __Pyx_GOTREF(__pyx_t_3);
-  __pyx_t_1 = PyObject_GetAttr(__pyx_t_3, __pyx_n_s__info); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 314; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__logger); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 314; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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+  __pyx_t_3 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__info); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 314; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_3);
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+  __pyx_t_1 = PyObject_Call(__pyx_t_3, ((PyObject *)__pyx_k_tuple_75), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 314; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":315
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":315
  * 
  *         logger.info("    Computing inverted indexes...")
  *         N = len(data)             # <<<<<<<<<<<<<<
@@ -31779,17 +31504,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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   __pyx_v_N = __pyx_t_2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":316
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":316
  *         logger.info("    Computing inverted indexes...")
  *         N = len(data)
  *         for i from 0 <= i < N:             # <<<<<<<<<<<<<<
  *             sa_word_id = data.arr[i]
  *             if sa_word_id == 1:
  */
-  __pyx_t_13 = __pyx_v_N;
-  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_13; __pyx_v_i++) {
+  __pyx_t_14 = __pyx_v_N;
+  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_14; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":317
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":317
  *         N = len(data)
  *         for i from 0 <= i < N:
  *             sa_word_id = data.arr[i]             # <<<<<<<<<<<<<<
@@ -31798,17 +31523,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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     __pyx_v_sa_word_id = (__pyx_v_data->arr[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":318
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":318
  *         for i from 0 <= i < N:
  *             sa_word_id = data.arr[i]
  *             if sa_word_id == 1:             # <<<<<<<<<<<<<<
  *                 queue._append(-1)
  *             else:
  */
-    __pyx_t_11 = (__pyx_v_sa_word_id == 1);
-    if (__pyx_t_11) {
+    __pyx_t_12 = (__pyx_v_sa_word_id == 1);
+    if (__pyx_t_12) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":319
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":319
  *             sa_word_id = data.arr[i]
  *             if sa_word_id == 1:
  *                 queue._append(-1)             # <<<<<<<<<<<<<<
@@ -31820,17 +31545,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":321
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":321
  *                 queue._append(-1)
  *             else:
  *                 for l from 1 <= l <= max_pattern_len:             # <<<<<<<<<<<<<<
  *                     node = frequent_patterns._contains(data.arr+i, l)
  *                     if node == NULL:
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-      __pyx_t_16 = __pyx_v_max_pattern_len;
-      for (__pyx_v_l = 1; __pyx_v_l <= __pyx_t_16; __pyx_v_l++) {
+      __pyx_t_17 = __pyx_v_max_pattern_len;
+      for (__pyx_v_l = 1; __pyx_v_l <= __pyx_t_17; __pyx_v_l++) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":322
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":322
  *             else:
  *                 for l from 1 <= l <= max_pattern_len:
  *                     node = frequent_patterns._contains(data.arr+i, l)             # <<<<<<<<<<<<<<
@@ -31839,17 +31564,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":323
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":323
  *                 for l from 1 <= l <= max_pattern_len:
  *                     node = frequent_patterns._contains(data.arr+i, l)
  *                     if node == NULL:             # <<<<<<<<<<<<<<
  *                         break
  *                     queue._append(i)
  */
-        __pyx_t_11 = (__pyx_v_node == NULL);
-        if (__pyx_t_11) {
+        __pyx_t_12 = (__pyx_v_node == NULL);
+        if (__pyx_t_12) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":324
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":324
  *                     node = frequent_patterns._contains(data.arr+i, l)
  *                     if node == NULL:
  *                         break             # <<<<<<<<<<<<<<
@@ -31861,7 +31586,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
         }
         __pyx_L14:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":325
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":325
  *                     if node == NULL:
  *                         break
  *                     queue._append(i)             # <<<<<<<<<<<<<<
@@ -31870,7 +31595,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":326
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":326
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  *                     queue._append(i)
  *                     queue._append(l)             # <<<<<<<<<<<<<<
@@ -31879,40 +31604,40 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
         ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_queue->__pyx_vtab)->_append(__pyx_v_queue, __pyx_v_l);
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":327
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":327
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  *                     queue._append(l)
  *                     trie_node_data_append(node, i)             # <<<<<<<<<<<<<<
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  *         logger.info("    Computing collocations...")
  */
-        __pyx_t_3 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 327; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-        __Pyx_GOTREF(__pyx_t_3);
-        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+        __pyx_t_1 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 327; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __Pyx_GOTREF(__pyx_t_1);
+        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
       }
       __pyx_L13_break:;
     }
     __pyx_L11:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":329
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":329
  *                     trie_node_data_append(node, i)
  * 
  *         logger.info("    Computing collocations...")             # <<<<<<<<<<<<<<
  *         N = len(queue)
  *         ptr1 = 0
  */
-  __pyx_t_3 = __Pyx_GetName(__pyx_m, __pyx_n_s__logger); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __Pyx_GOTREF(__pyx_t_3);
-  __pyx_t_1 = PyObject_GetAttr(__pyx_t_3, __pyx_n_s__info); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__logger); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
-  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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+  __pyx_t_3 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__info); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_3);
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+  __pyx_t_1 = PyObject_Call(__pyx_t_3, ((PyObject *)__pyx_k_tuple_77), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 329; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":330
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":330
  * 
  *         logger.info("    Computing collocations...")
  *         N = len(queue)             # <<<<<<<<<<<<<<
@@ -31922,7 +31647,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
   __pyx_t_2 = PyObject_Length(((PyObject *)__pyx_v_queue)); if (unlikely(__pyx_t_2 == -1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 330; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_N = __pyx_t_2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":331
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":331
  *         logger.info("    Computing collocations...")
  *         N = len(queue)
  *         ptr1 = 0             # <<<<<<<<<<<<<<
@@ -31931,7 +31656,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
   __pyx_v_ptr1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":332
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":332
  *         N = len(queue)
  *         ptr1 = 0
  *         sent_count = 0             # <<<<<<<<<<<<<<
@@ -31940,7 +31665,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
   __pyx_v_sent_count = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":333
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":333
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  *         sent_count = 0
  *         while ptr1 < N:    # main loop             # <<<<<<<<<<<<<<
@@ -31948,10 +31673,10 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
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  */
   while (1) {
-    __pyx_t_11 = (__pyx_v_ptr1 < __pyx_v_N);
-    if (!__pyx_t_11) break;
+    __pyx_t_12 = (__pyx_v_ptr1 < __pyx_v_N);
+    if (!__pyx_t_12) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":334
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":334
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  *             i1 = queue.arr[ptr1]             # <<<<<<<<<<<<<<
@@ -31960,17 +31685,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
     __pyx_v_i1 = (__pyx_v_queue->arr[__pyx_v_ptr1]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":335
+    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":335
  *         while ptr1 < N:    # main loop
  *             i1 = queue.arr[ptr1]
  *             if i1 > -1:             # <<<<<<<<<<<<<<
  *                 l1 = queue.arr[ptr1+1]
  *                 ptr2 = ptr1 + 2
  */
-    __pyx_t_11 = (__pyx_v_i1 > -1);
-    if (__pyx_t_11) {
+    __pyx_t_12 = (__pyx_v_i1 > -1);
+    if (__pyx_t_12) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":336
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":336
  *             i1 = queue.arr[ptr1]
  *             if i1 > -1:
  *                 l1 = queue.arr[ptr1+1]             # <<<<<<<<<<<<<<
@@ -31979,7 +31704,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
       __pyx_v_l1 = (__pyx_v_queue->arr[(__pyx_v_ptr1 + 1)]);
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":337
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":337
  *             if i1 > -1:
  *                 l1 = queue.arr[ptr1+1]
  *                 ptr2 = ptr1 + 2             # <<<<<<<<<<<<<<
@@ -31988,7 +31713,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
       __pyx_v_ptr2 = (__pyx_v_ptr1 + 2);
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":338
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":338
  *                 l1 = queue.arr[ptr1+1]
  *                 ptr2 = ptr1 + 2
  *                 while ptr2 < N:             # <<<<<<<<<<<<<<
@@ -31996,10 +31721,10 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  *                     if i2 == -1 or i2 - i1 >= self.train_max_initial_size:
  */
       while (1) {
-        __pyx_t_11 = (__pyx_v_ptr2 < __pyx_v_N);
-        if (!__pyx_t_11) break;
+        __pyx_t_12 = (__pyx_v_ptr2 < __pyx_v_N);
+        if (!__pyx_t_12) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":339
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":339
  *                 ptr2 = ptr1 + 2
  *                 while ptr2 < N:
  *                     i2 = queue.arr[ptr2]             # <<<<<<<<<<<<<<
@@ -32008,23 +31733,23 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
         __pyx_v_i2 = (__pyx_v_queue->arr[__pyx_v_ptr2]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":340
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":340
  *                 while ptr2 < N:
  *                     i2 = queue.arr[ptr2]
  *                     if i2 == -1 or i2 - i1 >= self.train_max_initial_size:             # <<<<<<<<<<<<<<
  *                         break
  *                     l2 = queue.arr[ptr2+1]
  */
-        __pyx_t_11 = (__pyx_v_i2 == -1);
-        if (!__pyx_t_11) {
-          __pyx_t_17 = ((__pyx_v_i2 - __pyx_v_i1) >= __pyx_v_self->train_max_initial_size);
-          __pyx_t_18 = __pyx_t_17;
+        __pyx_t_12 = (__pyx_v_i2 == -1);
+        if (!__pyx_t_12) {
+          __pyx_t_18 = ((__pyx_v_i2 - __pyx_v_i1) >= __pyx_v_self->train_max_initial_size);
+          __pyx_t_19 = __pyx_t_18;
         } else {
-          __pyx_t_18 = __pyx_t_11;
+          __pyx_t_19 = __pyx_t_12;
         }
-        if (__pyx_t_18) {
+        if (__pyx_t_19) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":341
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":341
  *                     i2 = queue.arr[ptr2]
  *                     if i2 == -1 or i2 - i1 >= self.train_max_initial_size:
  *                         break             # <<<<<<<<<<<<<<
@@ -32036,7 +31761,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
         }
         __pyx_L20:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":342
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":342
  *                     if i2 == -1 or i2 - i1 >= self.train_max_initial_size:
  *                         break
  *                     l2 = queue.arr[ptr2+1]             # <<<<<<<<<<<<<<
@@ -32045,45 +31770,45 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
         __pyx_v_l2 = (__pyx_v_queue->arr[(__pyx_v_ptr2 + 1)]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":343
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":343
  *                         break
  *                     l2 = queue.arr[ptr2+1]
  *                     if (i2 - i1 - l1 >= self.train_min_gap_size and             # <<<<<<<<<<<<<<
  *                             i2 + l2 - i1 <= self.train_max_initial_size and
  *                             l1+l2+1 <= self.max_length):
  */
-        __pyx_t_18 = (((__pyx_v_i2 - __pyx_v_i1) - __pyx_v_l1) >= __pyx_v_self->train_min_gap_size);
-        if (__pyx_t_18) {
+        __pyx_t_19 = (((__pyx_v_i2 - __pyx_v_i1) - __pyx_v_l1) >= __pyx_v_self->train_min_gap_size);
+        if (__pyx_t_19) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":344
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":344
  *                     l2 = queue.arr[ptr2+1]
  *                     if (i2 - i1 - l1 >= self.train_min_gap_size and
  *                             i2 + l2 - i1 <= self.train_max_initial_size and             # <<<<<<<<<<<<<<
  *                             l1+l2+1 <= self.max_length):
  *                         node = collocations._insert(data.arr+i1, l1)
  */
-          __pyx_t_11 = (((__pyx_v_i2 + __pyx_v_l2) - __pyx_v_i1) <= __pyx_v_self->train_max_initial_size);
-          if (__pyx_t_11) {
+          __pyx_t_12 = (((__pyx_v_i2 + __pyx_v_l2) - __pyx_v_i1) <= __pyx_v_self->train_max_initial_size);
+          if (__pyx_t_12) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":345
+            /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":345
  *                     if (i2 - i1 - l1 >= self.train_min_gap_size and
  *                             i2 + l2 - i1 <= self.train_max_initial_size and
  *                             l1+l2+1 <= self.max_length):             # <<<<<<<<<<<<<<
  *                         node = collocations._insert(data.arr+i1, l1)
  *                         node = trie_insert(node, -1)
  */
-            __pyx_t_17 = (((__pyx_v_l1 + __pyx_v_l2) + 1) <= __pyx_v_self->max_length);
-            __pyx_t_19 = __pyx_t_17;
+            __pyx_t_18 = (((__pyx_v_l1 + __pyx_v_l2) + 1) <= __pyx_v_self->max_length);
+            __pyx_t_20 = __pyx_t_18;
           } else {
-            __pyx_t_19 = __pyx_t_11;
+            __pyx_t_20 = __pyx_t_12;
           }
-          __pyx_t_11 = __pyx_t_19;
+          __pyx_t_12 = __pyx_t_20;
         } else {
-          __pyx_t_11 = __pyx_t_18;
+          __pyx_t_12 = __pyx_t_19;
         }
-        if (__pyx_t_11) {
+        if (__pyx_t_12) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":346
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":346
  *                             i2 + l2 - i1 <= self.train_max_initial_size and
  *                             l1+l2+1 <= self.max_length):
  *                         node = collocations._insert(data.arr+i1, l1)             # <<<<<<<<<<<<<<
@@ -32092,7 +31817,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
           __pyx_v_node = ((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_collocations->__pyx_vtab)->_insert(__pyx_v_collocations, (__pyx_v_data->arr + __pyx_v_i1), __pyx_v_l1);
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":347
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":347
  *                             l1+l2+1 <= self.max_length):
  *                         node = collocations._insert(data.arr+i1, l1)
  *                         node = trie_insert(node, -1)             # <<<<<<<<<<<<<<
@@ -32101,17 +31826,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
           __pyx_v_node = __pyx_f_3_sa_trie_insert(__pyx_v_node, -1);
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":348
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":348
  *                         node = collocations._insert(data.arr+i1, l1)
  *                         node = trie_insert(node, -1)
  *                         for i from i2 <= i < i2+l2:             # <<<<<<<<<<<<<<
  *                             node = trie_insert(node, data.arr[i])
  *                         trie_node_data_append(node, i1)
  */
-          __pyx_t_13 = (__pyx_v_i2 + __pyx_v_l2);
-          for (__pyx_v_i = __pyx_v_i2; __pyx_v_i < __pyx_t_13; __pyx_v_i++) {
+          __pyx_t_14 = (__pyx_v_i2 + __pyx_v_l2);
+          for (__pyx_v_i = __pyx_v_i2; __pyx_v_i < __pyx_t_14; __pyx_v_i++) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":349
+            /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":349
  *                         node = trie_insert(node, -1)
  *                         for i from i2 <= i < i2+l2:
  *                             node = trie_insert(node, data.arr[i])             # <<<<<<<<<<<<<<
@@ -32121,49 +31846,49 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
             __pyx_v_node = __pyx_f_3_sa_trie_insert(__pyx_v_node, (__pyx_v_data->arr[__pyx_v_i]));
           }
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":350
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":350
  *                         for i from i2 <= i < i2+l2:
  *                             node = trie_insert(node, data.arr[i])
  *                         trie_node_data_append(node, i1)             # <<<<<<<<<<<<<<
  *                         trie_node_data_append(node, i2)
  *                         if super_frequent_patterns._contains(data.arr+i2, l2) != NULL:
  */
-          __pyx_t_3 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 350; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          __Pyx_GOTREF(__pyx_t_3);
-          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+          __pyx_t_1 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 350; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __Pyx_GOTREF(__pyx_t_1);
+          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":351
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":351
  *                             node = trie_insert(node, data.arr[i])
  *                         trie_node_data_append(node, i1)
  *                         trie_node_data_append(node, i2)             # <<<<<<<<<<<<<<
  *                         if super_frequent_patterns._contains(data.arr+i2, l2) != NULL:
  *                             if super_frequent_patterns._contains(data.arr+i1, l1) != NULL:
  */
-          __pyx_t_3 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 351; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          __Pyx_GOTREF(__pyx_t_3);
-          __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+          __pyx_t_1 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 351; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __Pyx_GOTREF(__pyx_t_1);
+          __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":352
+          /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":352
  *                         trie_node_data_append(node, i1)
  *                         trie_node_data_append(node, i2)
  *                         if super_frequent_patterns._contains(data.arr+i2, l2) != NULL:             # <<<<<<<<<<<<<<
  *                             if super_frequent_patterns._contains(data.arr+i1, l1) != NULL:
  *                                 is_super = 1
  */
-          __pyx_t_11 = (((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_super_frequent_patterns->__pyx_vtab)->_contains(__pyx_v_super_frequent_patterns, (__pyx_v_data->arr + __pyx_v_i2), __pyx_v_l2) != NULL);
-          if (__pyx_t_11) {
+          __pyx_t_12 = (((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_super_frequent_patterns->__pyx_vtab)->_contains(__pyx_v_super_frequent_patterns, (__pyx_v_data->arr + __pyx_v_i2), __pyx_v_l2) != NULL);
+          if (__pyx_t_12) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":353
+            /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":353
  *                         trie_node_data_append(node, i2)
  *                         if super_frequent_patterns._contains(data.arr+i2, l2) != NULL:
  *                             if super_frequent_patterns._contains(data.arr+i1, l1) != NULL:             # <<<<<<<<<<<<<<
  *                                 is_super = 1
  *                             else:
  */
-            __pyx_t_11 = (((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_super_frequent_patterns->__pyx_vtab)->_contains(__pyx_v_super_frequent_patterns, (__pyx_v_data->arr + __pyx_v_i1), __pyx_v_l1) != NULL);
-            if (__pyx_t_11) {
+            __pyx_t_12 = (((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_super_frequent_patterns->__pyx_vtab)->_contains(__pyx_v_super_frequent_patterns, (__pyx_v_data->arr + __pyx_v_i1), __pyx_v_l1) != NULL);
+            if (__pyx_t_12) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":354
+              /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":354
  *                         if super_frequent_patterns._contains(data.arr+i2, l2) != NULL:
  *                             if super_frequent_patterns._contains(data.arr+i1, l1) != NULL:
  *                                 is_super = 1             # <<<<<<<<<<<<<<
@@ -32175,7 +31900,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
             }
             /*else*/ {
 
-              /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":356
+              /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":356
  *                                 is_super = 1
  *                             else:
  *                                 is_super = 0             # <<<<<<<<<<<<<<
@@ -32186,7 +31911,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
             }
             __pyx_L25:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":357
+            /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":357
  *                             else:
  *                                 is_super = 0
  *                             ptr3 = ptr2 + 2             # <<<<<<<<<<<<<<
@@ -32195,7 +31920,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
             __pyx_v_ptr3 = (__pyx_v_ptr2 + 2);
 
-            /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":358
+            /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":358
  *                                 is_super = 0
  *                             ptr3 = ptr2 + 2
  *                             while ptr3 < N:             # <<<<<<<<<<<<<<
@@ -32203,10 +31928,10 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  *                                 if i3 == -1 or i3 - i1 >= self.train_max_initial_size:
  */
             while (1) {
-              __pyx_t_11 = (__pyx_v_ptr3 < __pyx_v_N);
-              if (!__pyx_t_11) break;
+              __pyx_t_12 = (__pyx_v_ptr3 < __pyx_v_N);
+              if (!__pyx_t_12) break;
 
-              /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":359
+              /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":359
  *                             ptr3 = ptr2 + 2
  *                             while ptr3 < N:
  *                                 i3 = queue.arr[ptr3]             # <<<<<<<<<<<<<<
@@ -32215,23 +31940,23 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
               __pyx_v_i3 = (__pyx_v_queue->arr[__pyx_v_ptr3]);
 
-              /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":360
+              /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":360
  *                             while ptr3 < N:
  *                                 i3 = queue.arr[ptr3]
  *                                 if i3 == -1 or i3 - i1 >= self.train_max_initial_size:             # <<<<<<<<<<<<<<
  *                                     break
  *                                 l3 = queue.arr[ptr3+1]
  */
-              __pyx_t_11 = (__pyx_v_i3 == -1);
-              if (!__pyx_t_11) {
-                __pyx_t_18 = ((__pyx_v_i3 - __pyx_v_i1) >= __pyx_v_self->train_max_initial_size);
-                __pyx_t_19 = __pyx_t_18;
+              __pyx_t_12 = (__pyx_v_i3 == -1);
+              if (!__pyx_t_12) {
+                __pyx_t_19 = ((__pyx_v_i3 - __pyx_v_i1) >= __pyx_v_self->train_max_initial_size);
+                __pyx_t_20 = __pyx_t_19;
               } else {
-                __pyx_t_19 = __pyx_t_11;
+                __pyx_t_20 = __pyx_t_12;
               }
-              if (__pyx_t_19) {
+              if (__pyx_t_20) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":361
+                /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":361
  *                                 i3 = queue.arr[ptr3]
  *                                 if i3 == -1 or i3 - i1 >= self.train_max_initial_size:
  *                                     break             # <<<<<<<<<<<<<<
@@ -32243,7 +31968,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
               }
               __pyx_L28:;
 
-              /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":362
+              /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":362
  *                                 if i3 == -1 or i3 - i1 >= self.train_max_initial_size:
  *                                     break
  *                                 l3 = queue.arr[ptr3+1]             # <<<<<<<<<<<<<<
@@ -32252,45 +31977,45 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
               __pyx_v_l3 = (__pyx_v_queue->arr[(__pyx_v_ptr3 + 1)]);
 
-              /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":363
+              /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":363
  *                                     break
  *                                 l3 = queue.arr[ptr3+1]
  *                                 if (i3 - i2 - l2 >= self.train_min_gap_size and             # <<<<<<<<<<<<<<
  *                                         i3 + l3 - i1 <= self.train_max_initial_size and
  *                                         l1+l2+l3+2 <= self.max_length):
  */
-              __pyx_t_19 = (((__pyx_v_i3 - __pyx_v_i2) - __pyx_v_l2) >= __pyx_v_self->train_min_gap_size);
-              if (__pyx_t_19) {
+              __pyx_t_20 = (((__pyx_v_i3 - __pyx_v_i2) - __pyx_v_l2) >= __pyx_v_self->train_min_gap_size);
+              if (__pyx_t_20) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":364
+                /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":364
  *                                 l3 = queue.arr[ptr3+1]
  *                                 if (i3 - i2 - l2 >= self.train_min_gap_size and
  *                                         i3 + l3 - i1 <= self.train_max_initial_size and             # <<<<<<<<<<<<<<
  *                                         l1+l2+l3+2 <= self.max_length):
  *                                     if is_super or super_frequent_patterns._contains(data.arr+i3, l3) != NULL:
  */
-                __pyx_t_11 = (((__pyx_v_i3 + __pyx_v_l3) - __pyx_v_i1) <= __pyx_v_self->train_max_initial_size);
-                if (__pyx_t_11) {
+                __pyx_t_12 = (((__pyx_v_i3 + __pyx_v_l3) - __pyx_v_i1) <= __pyx_v_self->train_max_initial_size);
+                if (__pyx_t_12) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":365
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":365
  *                                 if (i3 - i2 - l2 >= self.train_min_gap_size and
  *                                         i3 + l3 - i1 <= self.train_max_initial_size and
  *                                         l1+l2+l3+2 <= self.max_length):             # <<<<<<<<<<<<<<
  *                                     if is_super or super_frequent_patterns._contains(data.arr+i3, l3) != NULL:
  *                                         node = collocations._insert(data.arr+i1, l1)
  */
-                  __pyx_t_18 = ((((__pyx_v_l1 + __pyx_v_l2) + __pyx_v_l3) + 2) <= __pyx_v_self->max_length);
-                  __pyx_t_17 = __pyx_t_18;
+                  __pyx_t_19 = ((((__pyx_v_l1 + __pyx_v_l2) + __pyx_v_l3) + 2) <= __pyx_v_self->max_length);
+                  __pyx_t_18 = __pyx_t_19;
                 } else {
-                  __pyx_t_17 = __pyx_t_11;
+                  __pyx_t_18 = __pyx_t_12;
                 }
-                __pyx_t_11 = __pyx_t_17;
+                __pyx_t_12 = __pyx_t_18;
               } else {
-                __pyx_t_11 = __pyx_t_19;
+                __pyx_t_12 = __pyx_t_20;
               }
-              if (__pyx_t_11) {
+              if (__pyx_t_12) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":366
+                /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":366
  *                                         i3 + l3 - i1 <= self.train_max_initial_size and
  *                                         l1+l2+l3+2 <= self.max_length):
  *                                     if is_super or super_frequent_patterns._contains(data.arr+i3, l3) != NULL:             # <<<<<<<<<<<<<<
@@ -32298,14 +32023,14 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  *                                         node = trie_insert(node, -1)
  */
                 if (!__pyx_v_is_super) {
-                  __pyx_t_11 = (((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_super_frequent_patterns->__pyx_vtab)->_contains(__pyx_v_super_frequent_patterns, (__pyx_v_data->arr + __pyx_v_i3), __pyx_v_l3) != NULL);
-                  __pyx_t_19 = __pyx_t_11;
+                  __pyx_t_12 = (((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_super_frequent_patterns->__pyx_vtab)->_contains(__pyx_v_super_frequent_patterns, (__pyx_v_data->arr + __pyx_v_i3), __pyx_v_l3) != NULL);
+                  __pyx_t_20 = __pyx_t_12;
                 } else {
-                  __pyx_t_19 = __pyx_v_is_super;
+                  __pyx_t_20 = __pyx_v_is_super;
                 }
-                if (__pyx_t_19) {
+                if (__pyx_t_20) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":367
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":367
  *                                         l1+l2+l3+2 <= self.max_length):
  *                                     if is_super or super_frequent_patterns._contains(data.arr+i3, l3) != NULL:
  *                                         node = collocations._insert(data.arr+i1, l1)             # <<<<<<<<<<<<<<
@@ -32314,7 +32039,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
                   __pyx_v_node = ((struct __pyx_vtabstruct_3_sa_TrieMap *)__pyx_v_collocations->__pyx_vtab)->_insert(__pyx_v_collocations, (__pyx_v_data->arr + __pyx_v_i1), __pyx_v_l1);
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":368
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":368
  *                                     if is_super or super_frequent_patterns._contains(data.arr+i3, l3) != NULL:
  *                                         node = collocations._insert(data.arr+i1, l1)
  *                                         node = trie_insert(node, -1)             # <<<<<<<<<<<<<<
@@ -32323,17 +32048,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
                   __pyx_v_node = __pyx_f_3_sa_trie_insert(__pyx_v_node, -1);
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":369
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":369
  *                                         node = collocations._insert(data.arr+i1, l1)
  *                                         node = trie_insert(node, -1)
  *                                         for i from i2 <= i < i2+l2:             # <<<<<<<<<<<<<<
  *                                             node = trie_insert(node, data.arr[i])
  *                                         node = trie_insert(node, -1)
  */
-                  __pyx_t_13 = (__pyx_v_i2 + __pyx_v_l2);
-                  for (__pyx_v_i = __pyx_v_i2; __pyx_v_i < __pyx_t_13; __pyx_v_i++) {
+                  __pyx_t_14 = (__pyx_v_i2 + __pyx_v_l2);
+                  for (__pyx_v_i = __pyx_v_i2; __pyx_v_i < __pyx_t_14; __pyx_v_i++) {
 
-                    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":370
+                    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":370
  *                                         node = trie_insert(node, -1)
  *                                         for i from i2 <= i < i2+l2:
  *                                             node = trie_insert(node, data.arr[i])             # <<<<<<<<<<<<<<
@@ -32343,7 +32068,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
                     __pyx_v_node = __pyx_f_3_sa_trie_insert(__pyx_v_node, (__pyx_v_data->arr[__pyx_v_i]));
                   }
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":371
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":371
  *                                         for i from i2 <= i < i2+l2:
  *                                             node = trie_insert(node, data.arr[i])
  *                                         node = trie_insert(node, -1)             # <<<<<<<<<<<<<<
@@ -32352,17 +32077,17 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
                   __pyx_v_node = __pyx_f_3_sa_trie_insert(__pyx_v_node, -1);
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":372
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":372
  *                                             node = trie_insert(node, data.arr[i])
  *                                         node = trie_insert(node, -1)
  *                                         for i from i3 <= i < i3+l3:             # <<<<<<<<<<<<<<
  *                                             node = trie_insert(node, data.arr[i])
  *                                         trie_node_data_append(node, i1)
  */
-                  __pyx_t_13 = (__pyx_v_i3 + __pyx_v_l3);
-                  for (__pyx_v_i = __pyx_v_i3; __pyx_v_i < __pyx_t_13; __pyx_v_i++) {
+                  __pyx_t_14 = (__pyx_v_i3 + __pyx_v_l3);
+                  for (__pyx_v_i = __pyx_v_i3; __pyx_v_i < __pyx_t_14; __pyx_v_i++) {
 
-                    /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":373
+                    /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":373
  *                                         node = trie_insert(node, -1)
  *                                         for i from i3 <= i < i3+l3:
  *                                             node = trie_insert(node, data.arr[i])             # <<<<<<<<<<<<<<
@@ -32372,38 +32097,38 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
                     __pyx_v_node = __pyx_f_3_sa_trie_insert(__pyx_v_node, (__pyx_v_data->arr[__pyx_v_i]));
                   }
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":374
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":374
  *                                         for i from i3 <= i < i3+l3:
  *                                             node = trie_insert(node, data.arr[i])
  *                                         trie_node_data_append(node, i1)             # <<<<<<<<<<<<<<
  *                                         trie_node_data_append(node, i2)
  *                                         trie_node_data_append(node, i3)
  */
-                  __pyx_t_3 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i1); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 374; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __Pyx_GOTREF(__pyx_t_3);
-                  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+                  __pyx_t_1 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 374; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __Pyx_GOTREF(__pyx_t_1);
+                  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":375
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":375
  *                                             node = trie_insert(node, data.arr[i])
  *                                         trie_node_data_append(node, i1)
  *                                         trie_node_data_append(node, i2)             # <<<<<<<<<<<<<<
  *                                         trie_node_data_append(node, i3)
  *                                 ptr3 = ptr3 + 2
  */
-                  __pyx_t_3 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 375; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __Pyx_GOTREF(__pyx_t_3);
-                  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+                  __pyx_t_1 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 375; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __Pyx_GOTREF(__pyx_t_1);
+                  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-                  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":376
+                  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":376
  *                                         trie_node_data_append(node, i1)
  *                                         trie_node_data_append(node, i2)
  *                                         trie_node_data_append(node, i3)             # <<<<<<<<<<<<<<
  *                                 ptr3 = ptr3 + 2
  *                     ptr2 = ptr2 + 2
  */
-                  __pyx_t_3 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i3); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 376; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __Pyx_GOTREF(__pyx_t_3);
-                  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+                  __pyx_t_1 = __pyx_f_3_sa_trie_node_data_append(__pyx_v_node, __pyx_v_i3); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 376; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __Pyx_GOTREF(__pyx_t_1);
+                  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
                   goto __pyx_L30;
                 }
                 __pyx_L30:;
@@ -32411,7 +32136,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
               }
               __pyx_L29:;
 
-              /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":377
+              /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":377
  *                                         trie_node_data_append(node, i2)
  *                                         trie_node_data_append(node, i3)
  *                                 ptr3 = ptr3 + 2             # <<<<<<<<<<<<<<
@@ -32428,7 +32153,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
         }
         __pyx_L21:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":378
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":378
  *                                         trie_node_data_append(node, i3)
  *                                 ptr3 = ptr3 + 2
  *                     ptr2 = ptr2 + 2             # <<<<<<<<<<<<<<
@@ -32439,7 +32164,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
       }
       __pyx_L19_break:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":379
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":379
  *                                 ptr3 = ptr3 + 2
  *                     ptr2 = ptr2 + 2
  *                 ptr1 = ptr1 + 2             # <<<<<<<<<<<<<<
@@ -32451,7 +32176,7 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":381
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":381
  *                 ptr1 = ptr1 + 2
  *             else:
  *                 sent_count = sent_count + 1             # <<<<<<<<<<<<<<
@@ -32460,48 +32185,48 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
  */
       __pyx_v_sent_count = (__pyx_v_sent_count + 1);
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":382
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":382
  *             else:
  *                 sent_count = sent_count + 1
  *                 if sent_count % 10000 == 0:             # <<<<<<<<<<<<<<
  *                     logger.debug("        %d sentences", sent_count)
  *                 ptr1 = ptr1 + 1
  */
-      __pyx_t_19 = (__Pyx_mod_long(__pyx_v_sent_count, 10000) == 0);
-      if (__pyx_t_19) {
+      __pyx_t_20 = (__Pyx_mod_long(__pyx_v_sent_count, 10000) == 0);
+      if (__pyx_t_20) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":383
+        /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":383
  *                 sent_count = sent_count + 1
  *                 if sent_count % 10000 == 0:
  *                     logger.debug("        %d sentences", sent_count)             # <<<<<<<<<<<<<<
  *                 ptr1 = ptr1 + 1
  * 
  */
-        __pyx_t_3 = __Pyx_GetName(__pyx_m, __pyx_n_s__logger); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-        __Pyx_GOTREF(__pyx_t_3);
-        __pyx_t_1 = PyObject_GetAttr(__pyx_t_3, __pyx_n_s__debug); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__logger); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_1);
-        __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
-        __pyx_t_3 = PyInt_FromLong(__pyx_v_sent_count); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_3 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__debug); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_3);
-        __pyx_t_8 = PyTuple_New(2); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-        __Pyx_GOTREF(__pyx_t_8);
+        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+        __pyx_t_1 = PyInt_FromLong(__pyx_v_sent_count); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __Pyx_GOTREF(__pyx_t_1);
+        __pyx_t_9 = PyTuple_New(2); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __Pyx_GOTREF(__pyx_t_9);
         __Pyx_INCREF(((PyObject *)__pyx_kp_s_78));
-        PyTuple_SET_ITEM(__pyx_t_8, 0, ((PyObject *)__pyx_kp_s_78));
+        PyTuple_SET_ITEM(__pyx_t_9, 0, ((PyObject *)__pyx_kp_s_78));
         __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_78));
-        PyTuple_SET_ITEM(__pyx_t_8, 1, __pyx_t_3);
-        __Pyx_GIVEREF(__pyx_t_3);
-        __pyx_t_3 = 0;
-        __pyx_t_3 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_8), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-        __Pyx_GOTREF(__pyx_t_3);
-        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
-        __Pyx_DECREF(((PyObject *)__pyx_t_8)); __pyx_t_8 = 0;
+        PyTuple_SET_ITEM(__pyx_t_9, 1, __pyx_t_1);
+        __Pyx_GIVEREF(__pyx_t_1);
+        __pyx_t_1 = 0;
+        __pyx_t_1 = PyObject_Call(__pyx_t_3, ((PyObject *)__pyx_t_9), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 383; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __Pyx_GOTREF(__pyx_t_1);
         __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
+        __Pyx_DECREF(((PyObject *)__pyx_t_9)); __pyx_t_9 = 0;
+        __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
         goto __pyx_L35;
       }
       __pyx_L35:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":384
+      /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":384
  *                 if sent_count % 10000 == 0:
  *                     logger.debug("        %d sentences", sent_count)
  *                 ptr1 = ptr1 + 1             # <<<<<<<<<<<<<<
@@ -32513,59 +32238,59 @@ static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_s
     __pyx_L17:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":386
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":386
  *                 ptr1 = ptr1 + 1
  * 
  *         self.precomputed_collocations = collocations.toMap(False)             # <<<<<<<<<<<<<<
  *         self.precomputed_index = frequent_patterns.toMap(True)
  * 
  */
-  __pyx_t_3 = PyObject_GetAttr(((PyObject *)__pyx_v_collocations), __pyx_n_s__toMap); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __Pyx_GOTREF(__pyx_t_3);
-  __pyx_t_8 = __Pyx_PyBool_FromLong(0); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __Pyx_GOTREF(__pyx_t_8);
-  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_collocations), __pyx_n_s__toMap); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[11]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":36
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":36
  *         self.ha = IntList(initial_len=V+1)
  * 
  *         isa = IntList(initial_len=N)             # <<<<<<<<<<<<<<
@@ -34187,7 +33968,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
   __pyx_v_isa = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":37
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":37
  * 
  *         isa = IntList(initial_len=N)
  *         word_count = IntList(initial_len=V+1)             # <<<<<<<<<<<<<<
@@ -34206,16 +33987,23 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
   __pyx_v_word_count = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":40
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":40
  * 
  *         '''Step 1: bucket sort data'''
  *         cdef float sort_start_time = monitor_cpu()             # <<<<<<<<<<<<<<
  *         cdef float start_time = sort_start_time
  *         for i from 0 <= i < N:
  */
-  __pyx_v_sort_start_time = __pyx_f_3_sa_monitor_cpu();
+  __pyx_t_2 = __Pyx_GetName(__pyx_m, __pyx_n_s__monitor_cpu); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 40; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_2);
+  __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 40; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
+  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
+  __pyx_t_4 = __pyx_PyFloat_AsFloat(__pyx_t_1); if (unlikely((__pyx_t_4 == (float)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 40; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+  __pyx_v_sort_start_time = __pyx_t_4;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":41
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":41
  *         '''Step 1: bucket sort data'''
  *         cdef float sort_start_time = monitor_cpu()
  *         cdef float start_time = sort_start_time             # <<<<<<<<<<<<<<
@@ -34224,17 +34012,17 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
   __pyx_v_start_time = __pyx_v_sort_start_time;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":42
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":42
  *         cdef float sort_start_time = monitor_cpu()
  *         cdef float start_time = sort_start_time
  *         for i from 0 <= i < N:             # <<<<<<<<<<<<<<
  *             a_i = self.darray.data.arr[i]
  *             word_count.arr[a_i] = word_count.arr[a_i] + 1
  */
-  __pyx_t_4 = __pyx_v_N;
-  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) {
+  __pyx_t_5 = __pyx_v_N;
+  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":43
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":43
  *         cdef float start_time = sort_start_time
  *         for i from 0 <= i < N:
  *             a_i = self.darray.data.arr[i]             # <<<<<<<<<<<<<<
@@ -34243,7 +34031,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
     __pyx_v_a_i = (__pyx_v_self->darray->data->arr[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":44
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":44
  *         for i from 0 <= i < N:
  *             a_i = self.darray.data.arr[i]
  *             word_count.arr[a_i] = word_count.arr[a_i] + 1             # <<<<<<<<<<<<<<
@@ -34253,7 +34041,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
     (__pyx_v_word_count->arr[__pyx_v_a_i]) = ((__pyx_v_word_count->arr[__pyx_v_a_i]) + 1);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":46
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":46
  *             word_count.arr[a_i] = word_count.arr[a_i] + 1
  * 
  *         n = 0             # <<<<<<<<<<<<<<
@@ -34262,17 +34050,17 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
   __pyx_v_n = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":47
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":47
  * 
  *         n = 0
  *         for i from 0 <= i < V+1:             # <<<<<<<<<<<<<<
  *             self.ha.arr[i] = n
  *             n = n + word_count.arr[i]
  */
-  __pyx_t_5 = (__pyx_v_V + 1);
-  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) {
+  __pyx_t_6 = (__pyx_v_V + 1);
+  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_6; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":48
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":48
  *         n = 0
  *         for i from 0 <= i < V+1:
  *             self.ha.arr[i] = n             # <<<<<<<<<<<<<<
@@ -34281,7 +34069,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
     (__pyx_v_self->ha->arr[__pyx_v_i]) = __pyx_v_n;
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":49
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":49
  *         for i from 0 <= i < V+1:
  *             self.ha.arr[i] = n
  *             n = n + word_count.arr[i]             # <<<<<<<<<<<<<<
@@ -34290,7 +34078,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
     __pyx_v_n = (__pyx_v_n + (__pyx_v_word_count->arr[__pyx_v_i]));
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":50
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":50
  *             self.ha.arr[i] = n
  *             n = n + word_count.arr[i]
  *             word_count.arr[i] = 0             # <<<<<<<<<<<<<<
@@ -34300,17 +34088,17 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
     (__pyx_v_word_count->arr[__pyx_v_i]) = 0;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":52
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":52
  *             word_count.arr[i] = 0
  * 
  *         for i from 0 <= i < N:             # <<<<<<<<<<<<<<
  *             a_i = self.darray.data.arr[i]
  *             self.sa.arr[self.ha.arr[a_i] + word_count.arr[a_i]] = i
  */
-  __pyx_t_4 = __pyx_v_N;
-  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_4; __pyx_v_i++) {
+  __pyx_t_5 = __pyx_v_N;
+  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":53
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":53
  * 
  *         for i from 0 <= i < N:
  *             a_i = self.darray.data.arr[i]             # <<<<<<<<<<<<<<
@@ -34319,7 +34107,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
     __pyx_v_a_i = (__pyx_v_self->darray->data->arr[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":54
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":54
  *         for i from 0 <= i < N:
  *             a_i = self.darray.data.arr[i]
  *             self.sa.arr[self.ha.arr[a_i] + word_count.arr[a_i]] = i             # <<<<<<<<<<<<<<
@@ -34328,7 +34116,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":55
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":55
  *             a_i = self.darray.data.arr[i]
  *             self.sa.arr[self.ha.arr[a_i] + word_count.arr[a_i]] = i
  *             isa.arr[i] = self.ha.arr[a_i + 1] - 1 # bucket pointer is last index in bucket             # <<<<<<<<<<<<<<
@@ -34337,7 +34125,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
     (__pyx_v_isa->arr[__pyx_v_i]) = ((__pyx_v_self->ha->arr[(__pyx_v_a_i + 1)]) - 1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":56
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":56
  *             self.sa.arr[self.ha.arr[a_i] + word_count.arr[a_i]] = i
  *             isa.arr[i] = self.ha.arr[a_i + 1] - 1 # bucket pointer is last index in bucket
  *             word_count.arr[a_i] = word_count.arr[a_i] + 1             # <<<<<<<<<<<<<<
@@ -34347,7 +34135,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
     (__pyx_v_word_count->arr[__pyx_v_a_i]) = ((__pyx_v_word_count->arr[__pyx_v_a_i]) + 1);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":59
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":59
  * 
  *         '''Determine size of initial runs'''
  *         current_run = 0             # <<<<<<<<<<<<<<
@@ -34356,33 +34144,33 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
   __pyx_v_current_run = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":60
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":60
  *         '''Determine size of initial runs'''
  *         current_run = 0
  *         for i from 0 <= i < V+1:             # <<<<<<<<<<<<<<
  *             if i < V and self.ha.arr[i+1] - self.ha.arr[i] == 1:
  *                 current_run = current_run + 1
  */
-  __pyx_t_5 = (__pyx_v_V + 1);
-  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_5; __pyx_v_i++) {
+  __pyx_t_6 = (__pyx_v_V + 1);
+  for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_6; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":61
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":61
  *         current_run = 0
  *         for i from 0 <= i < V+1:
  *             if i < V and self.ha.arr[i+1] - self.ha.arr[i] == 1:             # <<<<<<<<<<<<<<
  *                 current_run = current_run + 1
  *             else:
  */
-    __pyx_t_6 = (__pyx_v_i < __pyx_v_V);
-    if (__pyx_t_6) {
-      __pyx_t_7 = (((__pyx_v_self->ha->arr[(__pyx_v_i + 1)]) - (__pyx_v_self->ha->arr[__pyx_v_i])) == 1);
-      __pyx_t_8 = __pyx_t_7;
+    __pyx_t_7 = (__pyx_v_i < __pyx_v_V);
+    if (__pyx_t_7) {
+      __pyx_t_8 = (((__pyx_v_self->ha->arr[(__pyx_v_i + 1)]) - (__pyx_v_self->ha->arr[__pyx_v_i])) == 1);
+      __pyx_t_9 = __pyx_t_8;
     } else {
-      __pyx_t_8 = __pyx_t_6;
+      __pyx_t_9 = __pyx_t_7;
     }
-    if (__pyx_t_8) {
+    if (__pyx_t_9) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":62
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":62
  *         for i from 0 <= i < V+1:
  *             if i < V and self.ha.arr[i+1] - self.ha.arr[i] == 1:
  *                 current_run = current_run + 1             # <<<<<<<<<<<<<<
@@ -34394,17 +34182,17 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":64
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":64
  *                 current_run = current_run + 1
  *             else:
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  *                     self.sa.arr[self.ha.arr[i] - current_run] = -current_run
  *                     current_run = 0
  */
-      __pyx_t_8 = (__pyx_v_current_run > 0);
-      if (__pyx_t_8) {
+      __pyx_t_9 = (__pyx_v_current_run > 0);
+      if (__pyx_t_9) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":65
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":65
  *             else:
  *                 if current_run > 0:
  *                     self.sa.arr[self.ha.arr[i] - current_run] = -current_run             # <<<<<<<<<<<<<<
@@ -34413,7 +34201,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":66
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":66
  *                 if current_run > 0:
  *                     self.sa.arr[self.ha.arr[i] - current_run] = -current_run
  *                     current_run = 0             # <<<<<<<<<<<<<<
@@ -34428,35 +34216,44 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
     __pyx_L11:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":68
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":68
  *                     current_run = 0
  * 
  *         logger.info("    Bucket sort took %f seconds", (monitor_cpu() - sort_start_time))             # <<<<<<<<<<<<<<
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+  __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__logger); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 68; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":71
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":71
  * 
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@@ -34465,7 +34262,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":72
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":72
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@@ -34473,47 +34270,54 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":73
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":73
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  *             i = 0
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":74
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+    __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":75
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":75
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@@ -34522,7 +34326,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":76
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":76
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@@ -34531,7 +34335,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
  */
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":77
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":77
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@@ -34539,20 +34343,20 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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  */
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-      __pyx_t_8 = (__pyx_v_i < __pyx_v_N);
-      if (!__pyx_t_8) break;
+      __pyx_t_9 = (__pyx_v_i < __pyx_v_N);
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-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":78
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":78
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  *                     i = i - self.sa.arr[i]
  */
-      __pyx_t_8 = ((__pyx_v_self->sa->arr[__pyx_v_i]) < 0);
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":79
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":79
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@@ -34561,7 +34365,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":80
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":80
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@@ -34573,17 +34377,17 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":82
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":82
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-        __pyx_t_8 = (__pyx_v_skip < 0);
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-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":83
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":83
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@@ -34592,7 +34396,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":84
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":84
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@@ -34604,7 +34408,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":85
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":85
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@@ -34613,42 +34417,42 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_4read_text(struct __pyx_obj_3_sa_Su
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":86
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":87
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":87
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":88
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":88
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-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":89
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":89
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":90
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":90
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":91
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":91
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  *         # If the method of assigning word_id's is changed, this method
  *         # may need to be reconsidered as well.
  *         midpoint = (i+j)/2             # <<<<<<<<<<<<<<
@@ -35056,7 +34882,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
   __pyx_v_midpoint = __Pyx_div_long((__pyx_v_i + __pyx_v_j), 2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":124
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":124
  *         # may need to be reconsidered as well.
  *         midpoint = (i+j)/2
  *         pval = isa.arr[self.sa.arr[midpoint] + h]             # <<<<<<<<<<<<<<
@@ -35065,7 +34891,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
   __pyx_v_pval = (__pyx_v_isa->arr[((__pyx_v_self->sa->arr[__pyx_v_midpoint]) + __pyx_v_h)]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":125
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":125
  *         midpoint = (i+j)/2
  *         pval = isa.arr[self.sa.arr[midpoint] + h]
  *         if i != midpoint:             # <<<<<<<<<<<<<<
@@ -35075,7 +34901,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
   __pyx_t_1 = (__pyx_v_i != __pyx_v_midpoint);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":126
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":126
  *         pval = isa.arr[self.sa.arr[midpoint] + h]
  *         if i != midpoint:
  *             tmp = self.sa.arr[midpoint]             # <<<<<<<<<<<<<<
@@ -35084,7 +34910,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
     __pyx_v_tmp = (__pyx_v_self->sa->arr[__pyx_v_midpoint]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":127
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":127
  *         if i != midpoint:
  *             tmp = self.sa.arr[midpoint]
  *             self.sa.arr[midpoint] = self.sa.arr[i]             # <<<<<<<<<<<<<<
@@ -35093,7 +34919,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
     (__pyx_v_self->sa->arr[__pyx_v_midpoint]) = (__pyx_v_self->sa->arr[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":128
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":128
  *             tmp = self.sa.arr[midpoint]
  *             self.sa.arr[midpoint] = self.sa.arr[i]
  *             self.sa.arr[i] = tmp             # <<<<<<<<<<<<<<
@@ -35105,7 +34931,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
   }
   __pyx_L6:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":129
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":129
  *             self.sa.arr[midpoint] = self.sa.arr[i]
  *             self.sa.arr[i] = tmp
  *         phead = i             # <<<<<<<<<<<<<<
@@ -35114,7 +34940,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
   __pyx_v_phead = __pyx_v_i;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":130
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":130
  *             self.sa.arr[i] = tmp
  *         phead = i
  *         ptail = i             # <<<<<<<<<<<<<<
@@ -35123,7 +34949,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
   __pyx_v_ptail = __pyx_v_i;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":134
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":134
  *         # find the three partitions.    phead marks the first element
  *         # of the middle partition, and ptail marks the last element
  *         for k from i+1 <= k < j+1:             # <<<<<<<<<<<<<<
@@ -35133,7 +34959,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
   __pyx_t_5 = (__pyx_v_j + 1);
   for (__pyx_v_k = (__pyx_v_i + 1); __pyx_v_k < __pyx_t_5; __pyx_v_k++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":135
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":135
  *         # of the middle partition, and ptail marks the last element
  *         for k from i+1 <= k < j+1:
  *             if isa.arr[self.sa.arr[k] + h] < pval:             # <<<<<<<<<<<<<<
@@ -35143,7 +34969,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
     __pyx_t_1 = ((__pyx_v_isa->arr[((__pyx_v_self->sa->arr[__pyx_v_k]) + __pyx_v_h)]) < __pyx_v_pval);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":136
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":136
  *         for k from i+1 <= k < j+1:
  *             if isa.arr[self.sa.arr[k] + h] < pval:
  *                 if k > ptail+1:             # <<<<<<<<<<<<<<
@@ -35153,7 +34979,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
       __pyx_t_1 = (__pyx_v_k > (__pyx_v_ptail + 1));
       if (__pyx_t_1) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":137
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":137
  *             if isa.arr[self.sa.arr[k] + h] < pval:
  *                 if k > ptail+1:
  *                     tmp = self.sa.arr[phead]             # <<<<<<<<<<<<<<
@@ -35162,7 +34988,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
         __pyx_v_tmp = (__pyx_v_self->sa->arr[__pyx_v_phead]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":138
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":138
  *                 if k > ptail+1:
  *                     tmp = self.sa.arr[phead]
  *                     self.sa.arr[phead] = self.sa.arr[k]             # <<<<<<<<<<<<<<
@@ -35171,7 +34997,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
         (__pyx_v_self->sa->arr[__pyx_v_phead]) = (__pyx_v_self->sa->arr[__pyx_v_k]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":139
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":139
  *                     tmp = self.sa.arr[phead]
  *                     self.sa.arr[phead] = self.sa.arr[k]
  *                     self.sa.arr[k] = self.sa.arr[ptail+1]             # <<<<<<<<<<<<<<
@@ -35180,7 +35006,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
         (__pyx_v_self->sa->arr[__pyx_v_k]) = (__pyx_v_self->sa->arr[(__pyx_v_ptail + 1)]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":140
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":140
  *                     self.sa.arr[phead] = self.sa.arr[k]
  *                     self.sa.arr[k] = self.sa.arr[ptail+1]
  *                     self.sa.arr[ptail+1] = tmp             # <<<<<<<<<<<<<<
@@ -35192,7 +35018,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":142
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":142
  *                     self.sa.arr[ptail+1] = tmp
  *                 else: # k == ptail+1
  *                     tmp = self.sa.arr[phead]             # <<<<<<<<<<<<<<
@@ -35201,7 +35027,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
         __pyx_v_tmp = (__pyx_v_self->sa->arr[__pyx_v_phead]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":143
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":143
  *                 else: # k == ptail+1
  *                     tmp = self.sa.arr[phead]
  *                     self.sa.arr[phead] = self.sa.arr[k]             # <<<<<<<<<<<<<<
@@ -35210,7 +35036,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
         (__pyx_v_self->sa->arr[__pyx_v_phead]) = (__pyx_v_self->sa->arr[__pyx_v_k]);
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":144
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":144
  *                     tmp = self.sa.arr[phead]
  *                     self.sa.arr[phead] = self.sa.arr[k]
  *                     self.sa.arr[k] = tmp             # <<<<<<<<<<<<<<
@@ -35221,7 +35047,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
       }
       __pyx_L10:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":145
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":145
  *                     self.sa.arr[phead] = self.sa.arr[k]
  *                     self.sa.arr[k] = tmp
  *                 phead = phead + 1             # <<<<<<<<<<<<<<
@@ -35230,7 +35056,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
       __pyx_v_phead = (__pyx_v_phead + 1);
 
-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":146
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":146
  *                     self.sa.arr[k] = tmp
  *                 phead = phead + 1
  *                 ptail = ptail + 1             # <<<<<<<<<<<<<<
@@ -35242,7 +35068,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":148
+      /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":148
  *                 ptail = ptail + 1
  *             else:
  *                 if isa.arr[self.sa.arr[k] + h] == pval:             # <<<<<<<<<<<<<<
@@ -35252,7 +35078,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
       __pyx_t_1 = ((__pyx_v_isa->arr[((__pyx_v_self->sa->arr[__pyx_v_k]) + __pyx_v_h)]) == __pyx_v_pval);
       if (__pyx_t_1) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":149
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":149
  *             else:
  *                 if isa.arr[self.sa.arr[k] + h] == pval:
  *                     if k > ptail+1:             # <<<<<<<<<<<<<<
@@ -35262,7 +35088,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
         __pyx_t_1 = (__pyx_v_k > (__pyx_v_ptail + 1));
         if (__pyx_t_1) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":150
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":150
  *                 if isa.arr[self.sa.arr[k] + h] == pval:
  *                     if k > ptail+1:
  *                         tmp = self.sa.arr[ptail+1]             # <<<<<<<<<<<<<<
@@ -35271,7 +35097,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
           __pyx_v_tmp = (__pyx_v_self->sa->arr[(__pyx_v_ptail + 1)]);
 
-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":151
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":151
  *                     if k > ptail+1:
  *                         tmp = self.sa.arr[ptail+1]
  *                         self.sa.arr[ptail+1] = self.sa.arr[k]             # <<<<<<<<<<<<<<
@@ -35280,7 +35106,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
  */
           (__pyx_v_self->sa->arr[(__pyx_v_ptail + 1)]) = (__pyx_v_self->sa->arr[__pyx_v_k]);
 
-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":152
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":152
  *                         tmp = self.sa.arr[ptail+1]
  *                         self.sa.arr[ptail+1] = self.sa.arr[k]
  *                         self.sa.arr[k] = tmp             # <<<<<<<<<<<<<<
@@ -35292,7 +35118,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
         }
         __pyx_L12:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":153
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":153
  *                         self.sa.arr[ptail+1] = self.sa.arr[k]
  *                         self.sa.arr[k] = tmp
  *                     ptail = ptail + 1             # <<<<<<<<<<<<<<
@@ -35307,7 +35133,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
     __pyx_L9:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":156
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":156
  * 
  *         # recursively sort smaller suffixes
  *         self.q3sort(i, phead-1, h, isa, pad+"    ")             # <<<<<<<<<<<<<<
@@ -35347,7 +35173,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
   __Pyx_DECREF(((PyObject *)__pyx_t_8)); __pyx_t_8 = 0;
   __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":160
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":160
  *         # update suffixes with pivot value
  *         # corresponds to update_group function in Larsson & Sadakane
  *         for k from phead <= k < ptail+1:             # <<<<<<<<<<<<<<
@@ -35357,7 +35183,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
   __pyx_t_5 = (__pyx_v_ptail + 1);
   for (__pyx_v_k = __pyx_v_phead; __pyx_v_k < __pyx_t_5; __pyx_v_k++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":161
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":161
  *         # corresponds to update_group function in Larsson & Sadakane
  *         for k from phead <= k < ptail+1:
  *             isa.arr[self.sa.arr[k]] = ptail             # <<<<<<<<<<<<<<
@@ -35367,7 +35193,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
     (__pyx_v_isa->arr[(__pyx_v_self->sa->arr[__pyx_v_k])]) = __pyx_v_ptail;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":162
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":162
  *         for k from phead <= k < ptail+1:
  *             isa.arr[self.sa.arr[k]] = ptail
  *         if phead == ptail:             # <<<<<<<<<<<<<<
@@ -35377,7 +35203,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
   __pyx_t_1 = (__pyx_v_phead == __pyx_v_ptail);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":163
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":163
  *             isa.arr[self.sa.arr[k]] = ptail
  *         if phead == ptail:
  *             self.sa.arr[phead] = -1             # <<<<<<<<<<<<<<
@@ -35389,7 +35215,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_6q3sort(struct __pyx_obj_3_sa_Suffi
   }
   __pyx_L15:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":166
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":166
  * 
  *         # recursively sort larger suffixes
  *         self.q3sort(ptail+1, j, h, isa, pad+"    ")             # <<<<<<<<<<<<<<
@@ -35467,7 +35293,7 @@ static PyObject *__pyx_pw_3_sa_11SuffixArray_9write_text(PyObject *__pyx_v_self,
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":169
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":169
  * 
  * 
  *     def write_text(self, char* filename):             # <<<<<<<<<<<<<<
@@ -35486,7 +35312,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_8write_text(struct __pyx_obj_3_sa_S
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("write_text", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":170
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":170
  * 
  *     def write_text(self, char* filename):
  *         self.darray.write_text(filename)             # <<<<<<<<<<<<<<
@@ -35543,7 +35369,7 @@ static PyObject *__pyx_pw_3_sa_11SuffixArray_11read_binary(PyObject *__pyx_v_sel
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":172
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":172
  *         self.darray.write_text(filename)
  * 
  *     def read_binary(self, char* filename):             # <<<<<<<<<<<<<<
@@ -35557,7 +35383,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_binary(struct __pyx_obj_3_sa
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("read_binary", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":174
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":174
  *     def read_binary(self, char* filename):
  *         cdef FILE *f
  *         f = fopen(filename, "r")             # <<<<<<<<<<<<<<
@@ -35566,7 +35392,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_binary(struct __pyx_obj_3_sa
  */
   __pyx_v_f = fopen(__pyx_v_filename, __pyx_k__r);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":175
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":175
  *         cdef FILE *f
  *         f = fopen(filename, "r")
  *         self.darray.read_handle(f)             # <<<<<<<<<<<<<<
@@ -35575,7 +35401,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_binary(struct __pyx_obj_3_sa
  */
   ((struct __pyx_vtabstruct_3_sa_DataArray *)__pyx_v_self->darray->__pyx_vtab)->read_handle(__pyx_v_self->darray, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":176
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":176
  *         f = fopen(filename, "r")
  *         self.darray.read_handle(f)
  *         self.sa.read_handle(f)             # <<<<<<<<<<<<<<
@@ -35584,7 +35410,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_binary(struct __pyx_obj_3_sa
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sa->__pyx_vtab)->read_handle(__pyx_v_self->sa, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":177
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":177
  *         self.darray.read_handle(f)
  *         self.sa.read_handle(f)
  *         self.ha.read_handle(f)             # <<<<<<<<<<<<<<
@@ -35593,7 +35419,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_binary(struct __pyx_obj_3_sa
  */
   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->ha->__pyx_vtab)->read_handle(__pyx_v_self->ha, __pyx_v_f);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":178
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":178
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-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":180
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":180
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":182
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":183
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":183
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":184
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":184
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":185
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":185
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  *         self.sa.write_handle(f)
  *         self.ha.write_handle(f)             # <<<<<<<<<<<<<<
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":186
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":186
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  *         self.ha.write_handle(f)
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":188
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":188
  *         fclose(f)
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":189
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":189
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@@ -35787,7 +35613,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_14write_enhanced(struct __pyx_obj_3
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-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":190
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":190
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           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":191
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":191
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-            /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":192
+            /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":192
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-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":193
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":193
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-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":194
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-            /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":195
+            /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":195
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-          /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":196
+          /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":196
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-        /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":189
+        /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":189
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":198
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":201
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":202
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":203
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":204
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":205
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":207
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":209
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":212
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":213
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":214
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":215
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":216
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-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":218
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":220
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-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":221
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  *     cdef __get_range(self, int word_id, int offset, int low, int high, int midpoint):
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@@ -36287,7 +36097,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___get_range(struct __pyx_obj_3_sa_Su
   __pyx_t_1 = PyInt_FromLong(((struct __pyx_vtabstruct_3_sa_SuffixArray *)__pyx_v_self->__pyx_vtab)->__pyx___search_low(__pyx_v_self, __pyx_v_word_id, __pyx_v_offset, __pyx_v_low, __pyx_v_midpoint)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 221; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":222
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":222
  *     cdef __get_range(self, int word_id, int offset, int low, int high, int midpoint):
  *         return (self.__search_low(word_id, offset, low, midpoint),
  *                 self.__search_high(word_id, offset, midpoint, high))             # <<<<<<<<<<<<<<
@@ -36322,7 +36132,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___get_range(struct __pyx_obj_3_sa_Su
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":224
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":224
  *                 self.__search_high(word_id, offset, midpoint, high))
  * 
  *     cdef __lookup_helper(self, int word_id, int offset, int low, int high):             # <<<<<<<<<<<<<<
@@ -36343,7 +36153,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__lookup_helper", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":227
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":227
  *         cdef int midpoint
  * 
  *         if offset == 0:             # <<<<<<<<<<<<<<
@@ -36353,7 +36163,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   __pyx_t_1 = (__pyx_v_offset == 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":228
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":228
  * 
  *         if offset == 0:
  *             return (self.ha.arr[word_id], self.ha.arr[word_id+1])             # <<<<<<<<<<<<<<
@@ -36380,7 +36190,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":229
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":229
  *         if offset == 0:
  *             return (self.ha.arr[word_id], self.ha.arr[word_id+1])
  *         if low >= high:             # <<<<<<<<<<<<<<
@@ -36390,7 +36200,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   __pyx_t_1 = (__pyx_v_low >= __pyx_v_high);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":230
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":230
  *             return (self.ha.arr[word_id], self.ha.arr[word_id+1])
  *         if low >= high:
  *             return None             # <<<<<<<<<<<<<<
@@ -36405,7 +36215,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":232
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":232
  *             return None
  * 
  *         midpoint = (high + low) / 2             # <<<<<<<<<<<<<<
@@ -36414,7 +36224,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
  */
   __pyx_v_midpoint = __Pyx_div_long((__pyx_v_high + __pyx_v_low), 2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":233
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":233
  * 
  *         midpoint = (high + low) / 2
  *         if self.darray.data.arr[self.sa.arr[midpoint] + offset] == word_id:             # <<<<<<<<<<<<<<
@@ -36424,7 +36234,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   __pyx_t_1 = ((__pyx_v_self->darray->data->arr[((__pyx_v_self->sa->arr[__pyx_v_midpoint]) + __pyx_v_offset)]) == __pyx_v_word_id);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":234
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":234
  *         midpoint = (high + low) / 2
  *         if self.darray.data.arr[self.sa.arr[midpoint] + offset] == word_id:
  *             return self.__get_range(word_id, offset, low, high, midpoint)             # <<<<<<<<<<<<<<
@@ -36441,7 +36251,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   }
   __pyx_L5:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":235
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":235
  *         if self.darray.data.arr[self.sa.arr[midpoint] + offset] == word_id:
  *             return self.__get_range(word_id, offset, low, high, midpoint)
  *         if self.darray.data.arr[self.sa.arr[midpoint] + offset] > word_id:             # <<<<<<<<<<<<<<
@@ -36451,7 +36261,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   __pyx_t_1 = ((__pyx_v_self->darray->data->arr[((__pyx_v_self->sa->arr[__pyx_v_midpoint]) + __pyx_v_offset)]) > __pyx_v_word_id);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":236
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":236
  *             return self.__get_range(word_id, offset, low, high, midpoint)
  *         if self.darray.data.arr[self.sa.arr[midpoint] + offset] > word_id:
  *             return self.__lookup_helper(word_id, offset, low, midpoint)             # <<<<<<<<<<<<<<
@@ -36468,7 +36278,7 @@ static PyObject *__pyx_f_3_sa_11SuffixArray___lookup_helper(struct __pyx_obj_3_s
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":238
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":238
  *             return self.__lookup_helper(word_id, offset, low, midpoint)
  *         else:
  *             return self.__lookup_helper(word_id, offset, midpoint+1, high)             # <<<<<<<<<<<<<<
@@ -36505,11 +36315,11 @@ static PyObject *__pyx_pw_3_sa_11SuffixArray_17lookup(PyObject *__pyx_v_self, Py
   int __pyx_v_offset;
   int __pyx_v_low;
   int __pyx_v_high;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__word,&__pyx_n_s__offset,&__pyx_n_s__low,&__pyx_n_s__high,0};
   PyObject *__pyx_r = 0;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("lookup (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__word,&__pyx_n_s__offset,&__pyx_n_s__low,&__pyx_n_s__high,0};
     PyObject* values[4] = {0,0,0,0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -36525,20 +36335,24 @@ static PyObject *__pyx_pw_3_sa_11SuffixArray_17lookup(PyObject *__pyx_v_self, Py
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__word)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__word);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
         case  1:
-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__offset)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__offset);
+        if (likely(values[1])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 1); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
         case  2:
-        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__low)) != 0)) kw_args--;
+        values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__low);
+        if (likely(values[2])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 2); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
         case  3:
-        if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__high)) != 0)) kw_args--;
+        values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__high);
+        if (likely(values[3])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("lookup", 1, 4, 4, 3); {__pyx_filename = __pyx_f[12]; __pyx_lineno = 240; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
@@ -36572,7 +36386,7 @@ static PyObject *__pyx_pw_3_sa_11SuffixArray_17lookup(PyObject *__pyx_v_self, Py
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":240
+/* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":240
  *             return self.__lookup_helper(word_id, offset, midpoint+1, high)
  * 
  *     def lookup(self, word, int offset, int low, int high):             # <<<<<<<<<<<<<<
@@ -36593,7 +36407,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_Suff
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("lookup", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":242
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":242
  *     def lookup(self, word, int offset, int low, int high):
  *         cdef int wordid
  *         if low == -1:             # <<<<<<<<<<<<<<
@@ -36603,7 +36417,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_Suff
   __pyx_t_1 = (__pyx_v_low == -1);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":243
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":243
  *         cdef int wordid
  *         if low == -1:
  *             low = 0             # <<<<<<<<<<<<<<
@@ -36615,7 +36429,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_Suff
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":244
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":244
  *         if low == -1:
  *             low = 0
  *         if high == -1:             # <<<<<<<<<<<<<<
@@ -36625,7 +36439,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_Suff
   __pyx_t_1 = (__pyx_v_high == -1);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":245
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":245
  *             low = 0
  *         if high == -1:
  *             high = len(self.sa)             # <<<<<<<<<<<<<<
@@ -36641,17 +36455,17 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_Suff
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":246
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":246
  *         if high == -1:
  *             high = len(self.sa)
  *         if word in self.darray.word2id:             # <<<<<<<<<<<<<<
  *             word_id = self.darray.word2id[word]
  *             return self.__lookup_helper(word_id, offset, low, high)
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-  __pyx_t_1 = (__Pyx_PySequence_Contains(__pyx_v_word, __pyx_v_self->darray->word2id, Py_EQ)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 246; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = ((PySequence_Contains(__pyx_v_self->darray->word2id, __pyx_v_word))); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[12]; __pyx_lineno = 246; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":247
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":247
  *             high = len(self.sa)
  *         if word in self.darray.word2id:
  *             word_id = self.darray.word2id[word]             # <<<<<<<<<<<<<<
@@ -36663,7 +36477,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_Suff
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     __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":248
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":248
  *         if word in self.darray.word2id:
  *             word_id = self.darray.word2id[word]
  *             return self.__lookup_helper(word_id, offset, low, high)             # <<<<<<<<<<<<<<
@@ -36681,7 +36495,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_16lookup(struct __pyx_obj_3_sa_Suff
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":250
+    /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":250
  *             return self.__lookup_helper(word_id, offset, low, high)
  *         else:
  *             return None             # <<<<<<<<<<<<<<
@@ -36720,7 +36534,7 @@ static int __pyx_pw_3_sa_8TrieNode_1__cinit__(PyObject *__pyx_v_self, PyObject *
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":49
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":49
  *     cdef public children
  * 
  *     def __cinit__(self):             # <<<<<<<<<<<<<<
@@ -36737,7 +36551,7 @@ static int __pyx_pf_3_sa_8TrieNode___cinit__(struct __pyx_obj_3_sa_TrieNode *__p
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   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":50
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":50
  * 
  *     def __cinit__(self):
  *         self.children = {}             # <<<<<<<<<<<<<<
@@ -36774,7 +36588,7 @@ static PyObject *__pyx_pw_3_sa_8TrieNode_8children_1__get__(PyObject *__pyx_v_se
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":47
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":47
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  * cdef class TrieNode:
  *     cdef public children             # <<<<<<<<<<<<<<
@@ -36856,14 +36670,14 @@ static int __pyx_pw_3_sa_16ExtendedTrieNode_1__cinit__(PyObject *__pyx_v_self, P
   PyObject *__pyx_v_phrase = 0;
   PyObject *__pyx_v_phrase_location = 0;
   PyObject *__pyx_v_suffix_link = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__phrase,&__pyx_n_s__phrase_location,&__pyx_n_s__suffix_link,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__phrase,&__pyx_n_s__phrase_location,&__pyx_n_s__suffix_link,0};
     PyObject* values[3] = {0,0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":57
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":57
  *     cdef public suffix_link
  * 
  *     def __cinit__(self, phrase=None, phrase_location=None, suffix_link=None):             # <<<<<<<<<<<<<<
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   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":58
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":58
  * 
  *     def __cinit__(self, phrase=None, phrase_location=None, suffix_link=None):
  *         self.phrase = phrase             # <<<<<<<<<<<<<<
@@ -36948,7 +36762,7 @@ static int __pyx_pf_3_sa_16ExtendedTrieNode___cinit__(struct __pyx_obj_3_sa_Exte
   __Pyx_DECREF(__pyx_v_self->phrase);
   __pyx_v_self->phrase = __pyx_v_phrase;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":59
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":59
  *     def __cinit__(self, phrase=None, phrase_location=None, suffix_link=None):
  *         self.phrase = phrase
  *         self.phrase_location = phrase_location             # <<<<<<<<<<<<<<
@@ -36961,7 +36775,7 @@ static int __pyx_pf_3_sa_16ExtendedTrieNode___cinit__(struct __pyx_obj_3_sa_Exte
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   __pyx_v_self->phrase_location = __pyx_v_phrase_location;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":60
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":60
  *         self.phrase = phrase
  *         self.phrase_location = phrase_location
  *         self.suffix_link = suffix_link             # <<<<<<<<<<<<<<
@@ -36990,7 +36804,7 @@ static PyObject *__pyx_pw_3_sa_16ExtendedTrieNode_6phrase_1__get__(PyObject *__p
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":53
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":53
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  * cdef class ExtendedTrieNode(TrieNode):
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   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":54
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":54
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  *     cdef public phrase_location             # <<<<<<<<<<<<<<
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   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":55
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":55
  *     cdef public phrase
  *     cdef public phrase_location
  *     cdef public suffix_link             # <<<<<<<<<<<<<<
@@ -37244,11 +37058,11 @@ static int __pyx_pf_3_sa_16ExtendedTrieNode_11suffix_link_4__del__(struct __pyx_
 static int __pyx_pw_3_sa_9TrieTable_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
 static int __pyx_pw_3_sa_9TrieTable_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   PyObject *__pyx_v_extended = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__extended,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
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@@ -37292,7 +37106,7 @@ static int __pyx_pw_3_sa_9TrieTable_1__cinit__(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":67
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":67
  *     cdef public int count
  *     cdef public root
  *     def __cinit__(self, extended=False):             # <<<<<<<<<<<<<<
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   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":68
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":68
  *     cdef public root
  *     def __cinit__(self, extended=False):
  *         self.count = 0             # <<<<<<<<<<<<<<
@@ -37320,7 +37134,7 @@ static int __pyx_pf_3_sa_9TrieTable___cinit__(struct __pyx_obj_3_sa_TrieTable *_
  */
   __pyx_v_self->count = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":69
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":69
  *     def __cinit__(self, extended=False):
  *         self.count = 0
  *         self.extended = extended             # <<<<<<<<<<<<<<
@@ -37330,7 +37144,7 @@ static int __pyx_pf_3_sa_9TrieTable___cinit__(struct __pyx_obj_3_sa_TrieTable *_
   __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_extended); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_self->extended = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":70
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":70
  *         self.count = 0
  *         self.extended = extended
  *         if extended:             # <<<<<<<<<<<<<<
@@ -37340,7 +37154,7 @@ static int __pyx_pf_3_sa_9TrieTable___cinit__(struct __pyx_obj_3_sa_TrieTable *_
   __pyx_t_2 = __Pyx_PyObject_IsTrue(__pyx_v_extended); if (unlikely(__pyx_t_2 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 70; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":71
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":71
  *         self.extended = extended
  *         if extended:
  *             self.root = ExtendedTrieNode()             # <<<<<<<<<<<<<<
@@ -37358,7 +37172,7 @@ static int __pyx_pf_3_sa_9TrieTable___cinit__(struct __pyx_obj_3_sa_TrieTable *_
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":73
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":73
  *             self.root = ExtendedTrieNode()
  *         else:
  *             self.root = TrieNode()             # <<<<<<<<<<<<<<
@@ -37397,7 +37211,7 @@ static PyObject *__pyx_pw_3_sa_9TrieTable_8extended_1__get__(PyObject *__pyx_v_s
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":64
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":64
  * 
  * cdef class TrieTable:
  *     cdef public int extended             # <<<<<<<<<<<<<<
@@ -37475,7 +37289,7 @@ static PyObject *__pyx_pw_3_sa_9TrieTable_5count_1__get__(PyObject *__pyx_v_self
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":65
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":65
  * cdef class TrieTable:
  *     cdef public int extended
  *     cdef public int count             # <<<<<<<<<<<<<<
@@ -37553,7 +37367,7 @@ static PyObject *__pyx_pw_3_sa_9TrieTable_4root_1__get__(PyObject *__pyx_v_self)
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":66
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":66
  *     cdef public int extended
  *     cdef public int count
  *     cdef public root             # <<<<<<<<<<<<<<
@@ -37629,7 +37443,7 @@ static int __pyx_pf_3_sa_9TrieTable_4root_4__del__(struct __pyx_obj_3_sa_TrieTab
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":93
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":93
  * 
  *     # returns true if sent_id is contained
  *     cdef int contains(self, int sent_id):             # <<<<<<<<<<<<<<
@@ -37642,7 +37456,7 @@ static int __pyx_f_3_sa_14PhraseLocation_contains(CYTHON_UNUSED struct __pyx_obj
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("contains", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":94
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":94
  *     # returns true if sent_id is contained
  *     cdef int contains(self, int sent_id):
  *         return 1             # <<<<<<<<<<<<<<
@@ -37667,14 +37481,14 @@ static int __pyx_pw_3_sa_14PhraseLocation_1__cinit__(PyObject *__pyx_v_self, PyO
   int __pyx_v_arr_high;
   PyObject *__pyx_v_arr = 0;
   int __pyx_v_num_subpatterns;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__sa_low,&__pyx_n_s__sa_high,&__pyx_n_s__arr_low,&__pyx_n_s__arr_high,&__pyx_n_s__arr,&__pyx_n_s__num_subpatterns,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__sa_low,&__pyx_n_s__sa_high,&__pyx_n_s__arr_low,&__pyx_n_s__arr_high,&__pyx_n_s__arr,&__pyx_n_s__num_subpatterns,0};
     PyObject* values[6] = {0,0,0,0,0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":97
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":97
  * 
  *     def __cinit__(self, int sa_low=-1, int sa_high=-1, int arr_low=-1, int arr_high=-1,
  *             arr=None, int num_subpatterns=1):             # <<<<<<<<<<<<<<
@@ -37731,6 +37545,26 @@ static int __pyx_pw_3_sa_14PhraseLocation_1__cinit__(PyObject *__pyx_v_self, PyO
       if (unlikely(kw_args > 0)) {
         if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
       }
+      if (values[0]) {
+      } else {
+        __pyx_v_sa_low = ((int)-1);
+      }
+      if (values[1]) {
+      } else {
+        __pyx_v_sa_high = ((int)-1);
+      }
+      if (values[2]) {
+      } else {
+        __pyx_v_arr_low = ((int)-1);
+      }
+      if (values[3]) {
+      } else {
+        __pyx_v_arr_high = ((int)-1);
+      }
+      if (values[5]) {
+      } else {
+        __pyx_v_num_subpatterns = ((int)1);
+      }
     } else {
       switch (PyTuple_GET_SIZE(__pyx_args)) {
         case  6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
@@ -37783,7 +37617,7 @@ static int __pyx_pw_3_sa_14PhraseLocation_1__cinit__(PyObject *__pyx_v_self, PyO
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":96
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":96
  *         return 1
  * 
  *     def __cinit__(self, int sa_low=-1, int sa_high=-1, int arr_low=-1, int arr_high=-1,             # <<<<<<<<<<<<<<
@@ -37799,7 +37633,7 @@ static int __pyx_pf_3_sa_14PhraseLocation___cinit__(struct __pyx_obj_3_sa_Phrase
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":98
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":98
  *     def __cinit__(self, int sa_low=-1, int sa_high=-1, int arr_low=-1, int arr_high=-1,
  *             arr=None, int num_subpatterns=1):
  *         self.sa_low = sa_low             # <<<<<<<<<<<<<<
@@ -37808,7 +37642,7 @@ static int __pyx_pf_3_sa_14PhraseLocation___cinit__(struct __pyx_obj_3_sa_Phrase
  */
   __pyx_v_self->sa_low = __pyx_v_sa_low;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":99
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":99
  *             arr=None, int num_subpatterns=1):
  *         self.sa_low = sa_low
  *         self.sa_high = sa_high             # <<<<<<<<<<<<<<
@@ -37817,7 +37651,7 @@ static int __pyx_pf_3_sa_14PhraseLocation___cinit__(struct __pyx_obj_3_sa_Phrase
  */
   __pyx_v_self->sa_high = __pyx_v_sa_high;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":100
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":100
  *         self.sa_low = sa_low
  *         self.sa_high = sa_high
  *         self.arr_low = arr_low             # <<<<<<<<<<<<<<
@@ -37826,7 +37660,7 @@ static int __pyx_pf_3_sa_14PhraseLocation___cinit__(struct __pyx_obj_3_sa_Phrase
  */
   __pyx_v_self->arr_low = __pyx_v_arr_low;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":101
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":101
  *         self.sa_high = sa_high
  *         self.arr_low = arr_low
  *         self.arr_high = arr_high             # <<<<<<<<<<<<<<
@@ -37835,7 +37669,7 @@ static int __pyx_pf_3_sa_14PhraseLocation___cinit__(struct __pyx_obj_3_sa_Phrase
  */
   __pyx_v_self->arr_high = __pyx_v_arr_high;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":102
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":102
  *         self.arr_low = arr_low
  *         self.arr_high = arr_high
  *         self.arr = arr             # <<<<<<<<<<<<<<
@@ -37849,7 +37683,7 @@ static int __pyx_pf_3_sa_14PhraseLocation___cinit__(struct __pyx_obj_3_sa_Phrase
   __Pyx_DECREF(((PyObject *)__pyx_v_self->arr));
   __pyx_v_self->arr = ((struct __pyx_obj_3_sa_IntList *)__pyx_v_arr);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":103
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":103
  *         self.arr_high = arr_high
  *         self.arr = arr
  *         self.num_subpatterns = num_subpatterns             # <<<<<<<<<<<<<<
@@ -37873,11 +37707,11 @@ static int __pyx_pw_3_sa_7Sampler_1__cinit__(PyObject *__pyx_v_self, PyObject *_
 static int __pyx_pw_3_sa_7Sampler_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
   int __pyx_v_sample_size;
   struct __pyx_obj_3_sa_SuffixArray *__pyx_v_fsarray = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__sample_size,&__pyx_n_s__fsarray,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__sample_size,&__pyx_n_s__fsarray,0};
     PyObject* values[2] = {0,0};
     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -37891,10 +37725,12 @@ static int __pyx_pw_3_sa_7Sampler_1__cinit__(PyObject *__pyx_v_self, PyObject *_
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__sample_size)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__sample_size);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
         case  1:
-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__fsarray)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__fsarray);
+        if (likely(values[1])) kw_args--;
         else {
           __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 2, 2, 1); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 113; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
@@ -37929,7 +37765,7 @@ static int __pyx_pw_3_sa_7Sampler_1__cinit__(PyObject *__pyx_v_self, PyObject *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":113
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":113
  *     cdef IntList sa
  * 
  *     def __cinit__(self, int sample_size, SuffixArray fsarray):             # <<<<<<<<<<<<<<
@@ -37949,7 +37785,7 @@ static int __pyx_pf_3_sa_7Sampler___cinit__(struct __pyx_obj_3_sa_Sampler *__pyx
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("__cinit__", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":114
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":114
  * 
  *     def __cinit__(self, int sample_size, SuffixArray fsarray):
  *         self.sample_size = sample_size             # <<<<<<<<<<<<<<
@@ -37958,7 +37794,7 @@ static int __pyx_pf_3_sa_7Sampler___cinit__(struct __pyx_obj_3_sa_Sampler *__pyx
  */
   __pyx_v_self->sample_size = __pyx_v_sample_size;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":115
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":115
  *     def __cinit__(self, int sample_size, SuffixArray fsarray):
  *         self.sample_size = sample_size
  *         self.sa = fsarray.sa             # <<<<<<<<<<<<<<
@@ -37971,7 +37807,7 @@ static int __pyx_pf_3_sa_7Sampler___cinit__(struct __pyx_obj_3_sa_Sampler *__pyx
   __Pyx_DECREF(((PyObject *)__pyx_v_self->sa));
   __pyx_v_self->sa = __pyx_v_fsarray->sa;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":116
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":116
  *         self.sample_size = sample_size
  *         self.sa = fsarray.sa
  *         if sample_size > 0:             # <<<<<<<<<<<<<<
@@ -37981,7 +37817,7 @@ static int __pyx_pf_3_sa_7Sampler___cinit__(struct __pyx_obj_3_sa_Sampler *__pyx
   __pyx_t_1 = (__pyx_v_sample_size > 0);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":117
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":117
  *         self.sa = fsarray.sa
  *         if sample_size > 0:
  *             logger.info("Sampling strategy: uniform, max sample size = %d", sample_size)             # <<<<<<<<<<<<<<
@@ -38012,7 +37848,7 @@ static int __pyx_pf_3_sa_7Sampler___cinit__(struct __pyx_obj_3_sa_Sampler *__pyx
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":119
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":119
  *             logger.info("Sampling strategy: uniform, max sample size = %d", sample_size)
  *         else:
  *             logger.info("Sampling strategy: no sampling")             # <<<<<<<<<<<<<<
@@ -38061,7 +37897,7 @@ static PyObject *__pyx_pw_3_sa_7Sampler_3sample(PyObject *__pyx_v_self, PyObject
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":121
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":121
  *             logger.info("Sampling strategy: no sampling")
  * 
  *     def sample(self, PhraseLocation phrase_location):             # <<<<<<<<<<<<<<
@@ -38088,7 +37924,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("sample", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":134
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":134
  *         cdef int num_locations, val, j
  * 
  *         sample = IntList()             # <<<<<<<<<<<<<<
@@ -38100,7 +37936,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
   __pyx_v_sample = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":135
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":135
  * 
  *         sample = IntList()
  *         if phrase_location.arr is None:             # <<<<<<<<<<<<<<
@@ -38110,7 +37946,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
   __pyx_t_2 = (((PyObject *)__pyx_v_phrase_location->arr) == Py_None);
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":136
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":136
  *         sample = IntList()
  *         if phrase_location.arr is None:
  *             num_locations = phrase_location.sa_high - phrase_location.sa_low             # <<<<<<<<<<<<<<
@@ -38119,7 +37955,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
  */
     __pyx_v_num_locations = (__pyx_v_phrase_location->sa_high - __pyx_v_phrase_location->sa_low);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":137
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":137
  *         if phrase_location.arr is None:
  *             num_locations = phrase_location.sa_high - phrase_location.sa_low
  *             if self.sample_size == -1 or num_locations <= self.sample_size:             # <<<<<<<<<<<<<<
@@ -38135,7 +37971,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
     }
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":138
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":138
  *             num_locations = phrase_location.sa_high - phrase_location.sa_low
  *             if self.sample_size == -1 or num_locations <= self.sample_size:
  *                 sample._extend_arr(self.sa.arr + phrase_location.sa_low, num_locations)             # <<<<<<<<<<<<<<
@@ -38147,7 +37983,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":140
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":140
  *                 sample._extend_arr(self.sa.arr + phrase_location.sa_low, num_locations)
  *             else:
  *                 stepsize = float(num_locations)/float(self.sample_size)             # <<<<<<<<<<<<<<
@@ -38160,7 +37996,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
       }
       __pyx_v_stepsize = (((double)__pyx_v_num_locations) / ((double)__pyx_v_self->sample_size));
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":141
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":141
  *             else:
  *                 stepsize = float(num_locations)/float(self.sample_size)
  *                 i = phrase_location.sa_low             # <<<<<<<<<<<<<<
@@ -38169,7 +38005,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
  */
       __pyx_v_i = __pyx_v_phrase_location->sa_low;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":142
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":142
  *                 stepsize = float(num_locations)/float(self.sample_size)
  *                 i = phrase_location.sa_low
  *                 while i < phrase_location.sa_high and sample.len < self.sample_size:             # <<<<<<<<<<<<<<
@@ -38186,7 +38022,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         }
         if (!__pyx_t_3) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":145
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":145
  *                     '''Note: int(i) not guaranteed to have the desired
  *                     effect, according to the python documentation'''
  *                     if fmod(i,1.0) > 0.5:             # <<<<<<<<<<<<<<
@@ -38196,7 +38032,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         __pyx_t_3 = (fmod(__pyx_v_i, 1.0) > 0.5);
         if (__pyx_t_3) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":146
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":146
  *                     effect, according to the python documentation'''
  *                     if fmod(i,1.0) > 0.5:
  *                         val = int(ceil(i))             # <<<<<<<<<<<<<<
@@ -38208,7 +38044,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":148
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":148
  *                         val = int(ceil(i))
  *                     else:
  *                         val = int(floor(i))             # <<<<<<<<<<<<<<
@@ -38219,7 +38055,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         }
         __pyx_L7:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":149
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":149
  *                     else:
  *                         val = int(floor(i))
  *                     sample._append(self.sa.arr[val])             # <<<<<<<<<<<<<<
@@ -38228,7 +38064,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
  */
         ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_sample->__pyx_vtab)->_append(__pyx_v_sample, (__pyx_v_self->sa->arr[__pyx_v_val]));
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":150
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":150
  *                         val = int(floor(i))
  *                     sample._append(self.sa.arr[val])
  *                     i = i + stepsize             # <<<<<<<<<<<<<<
@@ -38243,7 +38079,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":152
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":152
  *                     i = i + stepsize
  *         else:
  *             num_locations = (phrase_location.arr_high - phrase_location.arr_low) / phrase_location.num_subpatterns             # <<<<<<<<<<<<<<
@@ -38261,7 +38097,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
     }
     __pyx_v_num_locations = __Pyx_div_int(__pyx_t_5, __pyx_v_phrase_location->num_subpatterns);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":153
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":153
  *         else:
  *             num_locations = (phrase_location.arr_high - phrase_location.arr_low) / phrase_location.num_subpatterns
  *             if self.sample_size == -1 or num_locations <= self.sample_size:             # <<<<<<<<<<<<<<
@@ -38277,7 +38113,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
     }
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":154
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":154
  *             num_locations = (phrase_location.arr_high - phrase_location.arr_low) / phrase_location.num_subpatterns
  *             if self.sample_size == -1 or num_locations <= self.sample_size:
  *                 sample = phrase_location.arr             # <<<<<<<<<<<<<<
@@ -38291,7 +38127,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":156
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":156
  *                 sample = phrase_location.arr
  *             else:
  *                 stepsize = float(num_locations)/float(self.sample_size)             # <<<<<<<<<<<<<<
@@ -38304,7 +38140,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
       }
       __pyx_v_stepsize = (((double)__pyx_v_num_locations) / ((double)__pyx_v_self->sample_size));
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":157
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":157
  *             else:
  *                 stepsize = float(num_locations)/float(self.sample_size)
  *                 i = phrase_location.arr_low             # <<<<<<<<<<<<<<
@@ -38313,7 +38149,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
  */
       __pyx_v_i = __pyx_v_phrase_location->arr_low;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":158
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":158
  *                 stepsize = float(num_locations)/float(self.sample_size)
  *                 i = phrase_location.arr_low
  *                 while i < num_locations and sample.len < self.sample_size * phrase_location.num_subpatterns:             # <<<<<<<<<<<<<<
@@ -38330,7 +38166,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         }
         if (!__pyx_t_4) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":161
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":161
  *                     '''Note: int(i) not guaranteed to have the desired
  *                     effect, according to the python documentation'''
  *                     if fmod(i,1.0) > 0.5:             # <<<<<<<<<<<<<<
@@ -38340,7 +38176,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         __pyx_t_4 = (fmod(__pyx_v_i, 1.0) > 0.5);
         if (__pyx_t_4) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":162
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":162
  *                     effect, according to the python documentation'''
  *                     if fmod(i,1.0) > 0.5:
  *                         val = int(ceil(i))             # <<<<<<<<<<<<<<
@@ -38352,7 +38188,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":164
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":164
  *                         val = int(ceil(i))
  *                     else:
  *                         val = int(floor(i))             # <<<<<<<<<<<<<<
@@ -38363,7 +38199,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
         }
         __pyx_L11:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":165
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":165
  *                     else:
  *                         val = int(floor(i))
  *                     j = phrase_location.arr_low + (val*phrase_location.num_subpatterns)             # <<<<<<<<<<<<<<
@@ -38372,7 +38208,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
  */
         __pyx_v_j = (__pyx_v_phrase_location->arr_low + (__pyx_v_val * __pyx_v_phrase_location->num_subpatterns));
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":166
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":166
  *                         val = int(floor(i))
  *                     j = phrase_location.arr_low + (val*phrase_location.num_subpatterns)
  *                     sample._extend_arr(phrase_location.arr.arr + j, phrase_location.num_subpatterns)             # <<<<<<<<<<<<<<
@@ -38381,7 +38217,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
  */
         ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_sample->__pyx_vtab)->_extend_arr(__pyx_v_sample, (__pyx_v_phrase_location->arr->arr + __pyx_v_j), __pyx_v_phrase_location->num_subpatterns);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":167
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":167
  *                     j = phrase_location.arr_low + (val*phrase_location.num_subpatterns)
  *                     sample._extend_arr(phrase_location.arr.arr + j, phrase_location.num_subpatterns)
  *                     i = i + stepsize             # <<<<<<<<<<<<<<
@@ -38395,7 +38231,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":168
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":168
  *                     sample._extend_arr(phrase_location.arr.arr + j, phrase_location.num_subpatterns)
  *                     i = i + stepsize
  *         return sample             # <<<<<<<<<<<<<<
@@ -38420,7 +38256,7 @@ static PyObject *__pyx_pf_3_sa_7Sampler_2sample(struct __pyx_obj_3_sa_Sampler *_
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":180
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":180
  * 
  * 
  * cdef void assign_matching(Matching* m, int* arr, int start, int step, int* sent_id_arr):             # <<<<<<<<<<<<<<
@@ -38432,7 +38268,7 @@ static void __pyx_f_3_sa_assign_matching(struct __pyx_t_3_sa_Matching *__pyx_v_m
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("assign_matching", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":181
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":181
  * 
  * cdef void assign_matching(Matching* m, int* arr, int start, int step, int* sent_id_arr):
  *     m.arr = arr             # <<<<<<<<<<<<<<
@@ -38441,7 +38277,7 @@ static void __pyx_f_3_sa_assign_matching(struct __pyx_t_3_sa_Matching *__pyx_v_m
  */
   __pyx_v_m->arr = __pyx_v_arr;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":182
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":182
  * cdef void assign_matching(Matching* m, int* arr, int start, int step, int* sent_id_arr):
  *     m.arr = arr
  *     m.start = start             # <<<<<<<<<<<<<<
@@ -38450,7 +38286,7 @@ static void __pyx_f_3_sa_assign_matching(struct __pyx_t_3_sa_Matching *__pyx_v_m
  */
   __pyx_v_m->start = __pyx_v_start;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":183
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":183
  *     m.arr = arr
  *     m.start = start
  *     m.end = start + step             # <<<<<<<<<<<<<<
@@ -38459,7 +38295,7 @@ static void __pyx_f_3_sa_assign_matching(struct __pyx_t_3_sa_Matching *__pyx_v_m
  */
   __pyx_v_m->end = (__pyx_v_start + __pyx_v_step);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":184
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":184
  *     m.start = start
  *     m.end = start + step
  *     m.sent_id = sent_id_arr[arr[start]]             # <<<<<<<<<<<<<<
@@ -38468,7 +38304,7 @@ static void __pyx_f_3_sa_assign_matching(struct __pyx_t_3_sa_Matching *__pyx_v_m
  */
   __pyx_v_m->sent_id = (__pyx_v_sent_id_arr[(__pyx_v_arr[__pyx_v_start])]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":185
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":185
  *     m.end = start + step
  *     m.sent_id = sent_id_arr[arr[start]]
  *     m.size = step             # <<<<<<<<<<<<<<
@@ -38480,7 +38316,7 @@ static void __pyx_f_3_sa_assign_matching(struct __pyx_t_3_sa_Matching *__pyx_v_m
   __Pyx_RefNannyFinishContext();
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":188
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":188
  * 
  * 
  * cdef int* append_combined_matching(int* arr, Matching* loc1, Matching* loc2,             # <<<<<<<<<<<<<<
@@ -38497,7 +38333,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
   int __pyx_t_2;
   __Pyx_RefNannySetupContext("append_combined_matching", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":192
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":192
  *     cdef int i, new_len
  * 
  *     new_len = result_len[0] + num_subpatterns             # <<<<<<<<<<<<<<
@@ -38506,7 +38342,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
  */
   __pyx_v_new_len = ((__pyx_v_result_len[0]) + __pyx_v_num_subpatterns);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":193
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":193
  * 
  *     new_len = result_len[0] + num_subpatterns
  *     arr = <int*> realloc(arr, new_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -38515,7 +38351,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
  */
   __pyx_v_arr = ((int *)realloc(__pyx_v_arr, (__pyx_v_new_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":195
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":195
  *     arr = <int*> realloc(arr, new_len*sizeof(int))
  * 
  *     for i from 0 <= i < loc1.size:             # <<<<<<<<<<<<<<
@@ -38525,7 +38361,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
   __pyx_t_1 = __pyx_v_loc1->size;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":196
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":196
  * 
  *     for i from 0 <= i < loc1.size:
  *         arr[result_len[0]+i] = loc1.arr[loc1.start+i]             # <<<<<<<<<<<<<<
@@ -38535,7 +38371,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
     (__pyx_v_arr[((__pyx_v_result_len[0]) + __pyx_v_i)]) = (__pyx_v_loc1->arr[(__pyx_v_loc1->start + __pyx_v_i)]);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":197
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":197
  *     for i from 0 <= i < loc1.size:
  *         arr[result_len[0]+i] = loc1.arr[loc1.start+i]
  *     if num_subpatterns > loc1.size:             # <<<<<<<<<<<<<<
@@ -38545,7 +38381,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
   __pyx_t_2 = (__pyx_v_num_subpatterns > __pyx_v_loc1->size);
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":198
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":198
  *         arr[result_len[0]+i] = loc1.arr[loc1.start+i]
  *     if num_subpatterns > loc1.size:
  *         arr[new_len-1] = loc2.arr[loc2.end-1]             # <<<<<<<<<<<<<<
@@ -38557,7 +38393,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
   }
   __pyx_L5:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":199
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":199
  *     if num_subpatterns > loc1.size:
  *         arr[new_len-1] = loc2.arr[loc2.end-1]
  *     result_len[0] = new_len             # <<<<<<<<<<<<<<
@@ -38566,7 +38402,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
  */
   (__pyx_v_result_len[0]) = __pyx_v_new_len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":200
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":200
  *         arr[new_len-1] = loc2.arr[loc2.end-1]
  *     result_len[0] = new_len
  *     return arr             # <<<<<<<<<<<<<<
@@ -38582,7 +38418,7 @@ static int *__pyx_f_3_sa_append_combined_matching(int *__pyx_v_arr, struct __pyx
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":203
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":203
  * 
  * 
  * cdef int* extend_arr(int* arr, int* arr_len, int* appendix, int appendix_len):             # <<<<<<<<<<<<<<
@@ -38596,7 +38432,7 @@ static int *__pyx_f_3_sa_extend_arr(int *__pyx_v_arr, int *__pyx_v_arr_len, int
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("extend_arr", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":206
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":206
  *     cdef int new_len
  * 
  *     new_len = arr_len[0] + appendix_len             # <<<<<<<<<<<<<<
@@ -38605,7 +38441,7 @@ static int *__pyx_f_3_sa_extend_arr(int *__pyx_v_arr, int *__pyx_v_arr_len, int
  */
   __pyx_v_new_len = ((__pyx_v_arr_len[0]) + __pyx_v_appendix_len);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":207
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":207
  * 
  *     new_len = arr_len[0] + appendix_len
  *     arr = <int*> realloc(arr, new_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -38614,7 +38450,7 @@ static int *__pyx_f_3_sa_extend_arr(int *__pyx_v_arr, int *__pyx_v_arr_len, int
  */
   __pyx_v_arr = ((int *)realloc(__pyx_v_arr, (__pyx_v_new_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":208
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":208
  *     new_len = arr_len[0] + appendix_len
  *     arr = <int*> realloc(arr, new_len*sizeof(int))
  *     memcpy(arr+arr_len[0], appendix, appendix_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -38623,7 +38459,7 @@ static int *__pyx_f_3_sa_extend_arr(int *__pyx_v_arr, int *__pyx_v_arr_len, int
  */
   memcpy((__pyx_v_arr + (__pyx_v_arr_len[0])), __pyx_v_appendix, (__pyx_v_appendix_len * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":209
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":209
  *     arr = <int*> realloc(arr, new_len*sizeof(int))
  *     memcpy(arr+arr_len[0], appendix, appendix_len*sizeof(int))
  *     arr_len[0] = new_len             # <<<<<<<<<<<<<<
@@ -38632,7 +38468,7 @@ static int *__pyx_f_3_sa_extend_arr(int *__pyx_v_arr, int *__pyx_v_arr_len, int
  */
   (__pyx_v_arr_len[0]) = __pyx_v_new_len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":210
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":210
  *     memcpy(arr+arr_len[0], appendix, appendix_len*sizeof(int))
  *     arr_len[0] = new_len
  *     return arr             # <<<<<<<<<<<<<<
@@ -38648,7 +38484,7 @@ static int *__pyx_f_3_sa_extend_arr(int *__pyx_v_arr, int *__pyx_v_arr_len, int
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":212
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":212
  *     return arr
  * 
  * cdef int median(int low, int high, int step):             # <<<<<<<<<<<<<<
@@ -38665,7 +38501,7 @@ static int __pyx_f_3_sa_median(int __pyx_v_low, int __pyx_v_high, int __pyx_v_st
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("median", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":213
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":213
  * 
  * cdef int median(int low, int high, int step):
  *     return low + (((high - low)/step)/2)*step             # <<<<<<<<<<<<<<
@@ -38694,7 +38530,7 @@ static int __pyx_f_3_sa_median(int __pyx_v_low, int __pyx_v_high, int __pyx_v_st
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":216
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":216
  * 
  * 
  * cdef void find_comparable_matchings(int low, int high, int* arr, int step, int loc, int* loc_minus, int* loc_plus):             # <<<<<<<<<<<<<<
@@ -38709,7 +38545,7 @@ static void __pyx_f_3_sa_find_comparable_matchings(int __pyx_v_low, int __pyx_v_
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("find_comparable_matchings", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":220
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":220
  *     # in which all matchings have the same first index as the one
  *     # starting at loc
  *     loc_plus[0] = loc + step             # <<<<<<<<<<<<<<
@@ -38718,7 +38554,7 @@ static void __pyx_f_3_sa_find_comparable_matchings(int __pyx_v_low, int __pyx_v_
  */
   (__pyx_v_loc_plus[0]) = (__pyx_v_loc + __pyx_v_step);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":221
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":221
  *     # starting at loc
  *     loc_plus[0] = loc + step
  *     while loc_plus[0] < high and arr[loc_plus[0]] == arr[loc]:             # <<<<<<<<<<<<<<
@@ -38735,7 +38571,7 @@ static void __pyx_f_3_sa_find_comparable_matchings(int __pyx_v_low, int __pyx_v_
     }
     if (!__pyx_t_3) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":222
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":222
  *     loc_plus[0] = loc + step
  *     while loc_plus[0] < high and arr[loc_plus[0]] == arr[loc]:
  *         loc_plus[0] = loc_plus[0] + step             # <<<<<<<<<<<<<<
@@ -38745,7 +38581,7 @@ static void __pyx_f_3_sa_find_comparable_matchings(int __pyx_v_low, int __pyx_v_
     (__pyx_v_loc_plus[0]) = ((__pyx_v_loc_plus[0]) + __pyx_v_step);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":223
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":223
  *     while loc_plus[0] < high and arr[loc_plus[0]] == arr[loc]:
  *         loc_plus[0] = loc_plus[0] + step
  *     loc_minus[0] = loc             # <<<<<<<<<<<<<<
@@ -38754,7 +38590,7 @@ static void __pyx_f_3_sa_find_comparable_matchings(int __pyx_v_low, int __pyx_v_
  */
   (__pyx_v_loc_minus[0]) = __pyx_v_loc;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":224
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":224
  *         loc_plus[0] = loc_plus[0] + step
  *     loc_minus[0] = loc
  *     while loc_minus[0]-step >= low and arr[loc_minus[0]-step] == arr[loc]:             # <<<<<<<<<<<<<<
@@ -38771,7 +38607,7 @@ static void __pyx_f_3_sa_find_comparable_matchings(int __pyx_v_low, int __pyx_v_
     }
     if (!__pyx_t_2) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":225
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":225
  *     loc_minus[0] = loc
  *     while loc_minus[0]-step >= low and arr[loc_minus[0]-step] == arr[loc]:
  *         loc_minus[0] = loc_minus[0] - step             # <<<<<<<<<<<<<<
@@ -38808,14 +38644,14 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
   int __pyx_v_use_baeza_yates;
   int __pyx_v_use_collocations;
   int __pyx_v_use_index;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__alignment,&__pyx_n_s__by_slack_factor,&__pyx_n_s__category,&__pyx_n_s__max_chunks,&__pyx_n_s__max_initial_size,&__pyx_n_s__max_length,&__pyx_n_s__max_nonterminals,&__pyx_n_s__max_target_chunks,&__pyx_n_s__max_target_length,&__pyx_n_s__min_gap_size,&__pyx_n_s__precompute_file,&__pyx_n_s_70,&__pyx_n_s__precompute_rank,&__pyx_n_s_103,&__pyx_n_s_104,&__pyx_n_s_71,&__pyx_n_s__train_min_gap_size,&__pyx_n_s__tight_phrases,&__pyx_n_s__use_baeza_yates,&__pyx_n_s__use_collocations,&__pyx_n_s__use_index,0};
   int __pyx_r;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__alignment,&__pyx_n_s__by_slack_factor,&__pyx_n_s__category,&__pyx_n_s__max_chunks,&__pyx_n_s__max_initial_size,&__pyx_n_s__max_length,&__pyx_n_s__max_nonterminals,&__pyx_n_s__max_target_chunks,&__pyx_n_s__max_target_length,&__pyx_n_s__min_gap_size,&__pyx_n_s__precompute_file,&__pyx_n_s_70,&__pyx_n_s__precompute_rank,&__pyx_n_s_103,&__pyx_n_s_104,&__pyx_n_s_71,&__pyx_n_s__train_min_gap_size,&__pyx_n_s__tight_phrases,&__pyx_n_s__use_baeza_yates,&__pyx_n_s__use_collocations,&__pyx_n_s__use_index,0};
     PyObject* values[21] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":295
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":296
  *             char* category="[X]",
  *             # maximum number of contiguous chunks of terminal symbols in RHS of a rule. If None, defaults to max_nonterminals+1
  *             max_chunks=None,             # <<<<<<<<<<<<<<
@@ -38824,7 +38660,7 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
  */
     values[3] = ((PyObject *)Py_None);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":303
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":304
  *             unsigned max_nonterminals=2,
  *             # maximum number of contiguous chunks of terminal symbols in target-side RHS of a rule. If None, defaults to max_nonterminals+1
  *             max_target_chunks=None,             # <<<<<<<<<<<<<<
@@ -38833,7 +38669,7 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
  */
     values[7] = ((PyObject *)Py_None);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":305
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":306
  *             max_target_chunks=None,
  *             # maximum number of target side symbols (both T and NT) allowed in a rule. If None, defaults to max_initial_size
  *             max_target_length=None,             # <<<<<<<<<<<<<<
@@ -38842,7 +38678,7 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
  */
     values[8] = ((PyObject *)Py_None);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":309
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":310
  *             unsigned min_gap_size=2,
  *             # filename of file containing precomputed collocations
  *             precompute_file=None,             # <<<<<<<<<<<<<<
@@ -38881,7 +38717,8 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__alignment)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__alignment);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
         case  1:
         if (kw_args > 0) {
@@ -38985,7 +38822,127 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
         }
       }
       if (unlikely(kw_args > 0)) {
-        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 287; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 288; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      }
+      if (values[1]) {
+      } else {
+
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":292
+ *             Alignment alignment,
+ *             # parameter for double-binary search; doesn't seem to matter much
+ *             float by_slack_factor=1.0,             # <<<<<<<<<<<<<<
+ *             # name of generic nonterminal used by Hiero
+ *             char* category="[X]",
+ */
+        __pyx_v_by_slack_factor = ((float)1.0);
+      }
+      if (values[2]) {
+      } else {
+        __pyx_v_category = ((char *)__pyx_k_105);
+      }
+      if (values[4]) {
+      } else {
+        __pyx_v_max_initial_size = ((unsigned int)10);
+      }
+      if (values[5]) {
+      } else {
+        __pyx_v_max_length = ((unsigned int)5);
+      }
+      if (values[6]) {
+      } else {
+        __pyx_v_max_nonterminals = ((unsigned int)2);
+      }
+      if (values[9]) {
+      } else {
+        __pyx_v_min_gap_size = ((unsigned int)2);
+      }
+      if (values[11]) {
+      } else {
+        __pyx_v_precompute_secondary_rank = ((unsigned int)20);
+      }
+      if (values[12]) {
+      } else {
+        __pyx_v_precompute_rank = ((unsigned int)100);
+      }
+      if (values[13]) {
+      } else {
+
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":316
+ *             unsigned precompute_rank=100,
+ *             # require extracted rules to have at least one aligned word
+ *             bint require_aligned_terminal=True,             # <<<<<<<<<<<<<<
+ *             # require each contiguous chunk of extracted rules to have at least one aligned word
+ *             bint require_aligned_chunks=False,
+ */
+        __pyx_v_require_aligned_terminal = ((int)1);
+      }
+      if (values[14]) {
+      } else {
+
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":318
+ *             bint require_aligned_terminal=True,
+ *             # require each contiguous chunk of extracted rules to have at least one aligned word
+ *             bint require_aligned_chunks=False,             # <<<<<<<<<<<<<<
+ *             # maximum span of a grammar rule extracted from TRAINING DATA
+ *             unsigned train_max_initial_size=10,
+ */
+        __pyx_v_require_aligned_chunks = ((int)0);
+      }
+      if (values[15]) {
+      } else {
+        __pyx_v_train_max_initial_size = ((unsigned int)10);
+      }
+      if (values[16]) {
+      } else {
+        __pyx_v_train_min_gap_size = ((unsigned int)2);
+      }
+      if (values[17]) {
+      } else {
+
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":324
+ *             unsigned train_min_gap_size=2,
+ *             # False if phrases should be loose (better but slower), True otherwise
+ *             bint tight_phrases=True,             # <<<<<<<<<<<<<<
+ *             # True to require use of double-binary alg, false otherwise
+ *             bint use_baeza_yates=True,
+ */
+        __pyx_v_tight_phrases = ((int)1);
+      }
+      if (values[18]) {
+      } else {
+
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":326
+ *             bint tight_phrases=True,
+ *             # True to require use of double-binary alg, false otherwise
+ *             bint use_baeza_yates=True,             # <<<<<<<<<<<<<<
+ *             # True to enable used of precomputed collocations
+ *             bint use_collocations=True,
+ */
+        __pyx_v_use_baeza_yates = ((int)1);
+      }
+      if (values[19]) {
+      } else {
+
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":328
+ *             bint use_baeza_yates=True,
+ *             # True to enable used of precomputed collocations
+ *             bint use_collocations=True,             # <<<<<<<<<<<<<<
+ *             # True to enable use of precomputed inverted indices
+ *             bint use_index=True):
+ */
+        __pyx_v_use_collocations = ((int)1);
+      }
+      if (values[20]) {
+      } else {
+
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":330
+ *             bint use_collocations=True,
+ *             # True to enable use of precomputed inverted indices
+ *             bint use_index=True):             # <<<<<<<<<<<<<<
+ *         '''Note: we make a distinction between the min_gap_size
+ *         and max_initial_size used in test and train.    The latter
+ */
+        __pyx_v_use_index = ((int)1);
       }
     } else {
       switch (PyTuple_GET_SIZE(__pyx_args)) {
@@ -39016,10 +38973,10 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
     }
     __pyx_v_alignment = ((struct __pyx_obj_3_sa_Alignment *)values[0]);
     if (values[1]) {
-      __pyx_v_by_slack_factor = __pyx_PyFloat_AsFloat(values[1]); if (unlikely((__pyx_v_by_slack_factor == (float)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 291; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_by_slack_factor = __pyx_PyFloat_AsFloat(values[1]); if (unlikely((__pyx_v_by_slack_factor == (float)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 292; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":291
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":292
  *             Alignment alignment,
  *             # parameter for double-binary search; doesn't seem to matter much
  *             float by_slack_factor=1.0,             # <<<<<<<<<<<<<<
@@ -39029,49 +38986,49 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
       __pyx_v_by_slack_factor = ((float)1.0);
     }
     if (values[2]) {
-      __pyx_v_category = PyBytes_AsString(values[2]); if (unlikely((!__pyx_v_category) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 293; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_category = PyBytes_AsString(values[2]); if (unlikely((!__pyx_v_category) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 294; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_category = ((char *)__pyx_k_105);
     }
     __pyx_v_max_chunks = values[3];
     if (values[4]) {
-      __pyx_v_max_initial_size = __Pyx_PyInt_AsUnsignedInt(values[4]); if (unlikely((__pyx_v_max_initial_size == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 297; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_max_initial_size = __Pyx_PyInt_AsUnsignedInt(values[4]); if (unlikely((__pyx_v_max_initial_size == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 298; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_max_initial_size = ((unsigned int)10);
     }
     if (values[5]) {
-      __pyx_v_max_length = __Pyx_PyInt_AsUnsignedInt(values[5]); if (unlikely((__pyx_v_max_length == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 299; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_max_length = __Pyx_PyInt_AsUnsignedInt(values[5]); if (unlikely((__pyx_v_max_length == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 300; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_max_length = ((unsigned int)5);
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     if (values[6]) {
-      __pyx_v_max_nonterminals = __Pyx_PyInt_AsUnsignedInt(values[6]); if (unlikely((__pyx_v_max_nonterminals == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 301; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_max_nonterminals = __Pyx_PyInt_AsUnsignedInt(values[6]); if (unlikely((__pyx_v_max_nonterminals == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 302; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_max_nonterminals = ((unsigned int)2);
     }
     __pyx_v_max_target_chunks = values[7];
     __pyx_v_max_target_length = values[8];
     if (values[9]) {
-      __pyx_v_min_gap_size = __Pyx_PyInt_AsUnsignedInt(values[9]); if (unlikely((__pyx_v_min_gap_size == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 307; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_min_gap_size = __Pyx_PyInt_AsUnsignedInt(values[9]); if (unlikely((__pyx_v_min_gap_size == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 308; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_min_gap_size = ((unsigned int)2);
     }
     __pyx_v_precompute_file = values[10];
     if (values[11]) {
-      __pyx_v_precompute_secondary_rank = __Pyx_PyInt_AsUnsignedInt(values[11]); if (unlikely((__pyx_v_precompute_secondary_rank == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 311; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_precompute_secondary_rank = __Pyx_PyInt_AsUnsignedInt(values[11]); if (unlikely((__pyx_v_precompute_secondary_rank == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 312; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_precompute_secondary_rank = ((unsigned int)20);
     }
     if (values[12]) {
-      __pyx_v_precompute_rank = __Pyx_PyInt_AsUnsignedInt(values[12]); if (unlikely((__pyx_v_precompute_rank == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 313; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_precompute_rank = __Pyx_PyInt_AsUnsignedInt(values[12]); if (unlikely((__pyx_v_precompute_rank == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 314; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_precompute_rank = ((unsigned int)100);
     }
     if (values[13]) {
-      __pyx_v_require_aligned_terminal = __Pyx_PyObject_IsTrue(values[13]); if (unlikely((__pyx_v_require_aligned_terminal == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 315; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_require_aligned_terminal = __Pyx_PyObject_IsTrue(values[13]); if (unlikely((__pyx_v_require_aligned_terminal == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 316; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":315
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":316
  *             unsigned precompute_rank=100,
  *             # require extracted rules to have at least one aligned word
  *             bint require_aligned_terminal=True,             # <<<<<<<<<<<<<<
@@ -39081,10 +39038,10 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
       __pyx_v_require_aligned_terminal = ((int)1);
     }
     if (values[14]) {
-      __pyx_v_require_aligned_chunks = __Pyx_PyObject_IsTrue(values[14]); if (unlikely((__pyx_v_require_aligned_chunks == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 317; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_require_aligned_chunks = __Pyx_PyObject_IsTrue(values[14]); if (unlikely((__pyx_v_require_aligned_chunks == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 318; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":317
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":318
  *             bint require_aligned_terminal=True,
  *             # require each contiguous chunk of extracted rules to have at least one aligned word
  *             bint require_aligned_chunks=False,             # <<<<<<<<<<<<<<
@@ -39094,20 +39051,20 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
       __pyx_v_require_aligned_chunks = ((int)0);
     }
     if (values[15]) {
-      __pyx_v_train_max_initial_size = __Pyx_PyInt_AsUnsignedInt(values[15]); if (unlikely((__pyx_v_train_max_initial_size == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 319; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+      __pyx_v_train_max_initial_size = __Pyx_PyInt_AsUnsignedInt(values[15]); if (unlikely((__pyx_v_train_max_initial_size == (unsigned int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 320; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
     } else {
       __pyx_v_train_max_initial_size = ((unsigned int)10);
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+  if (PyDict_SetItem(__pyx_t_1, ((PyObject *)__pyx_n_s__phrase_location), __pyx_t_2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 337; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_2 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_ExtendedTrieNode)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_1)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 336; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_ExtendedTrieNode)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_1)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 337; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
   __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
   __Pyx_GIVEREF(__pyx_t_2);
@@ -39420,7 +39380,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->rules->root = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":337
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":338
  *         self.rules = TrieTable(True) # cache
  *         self.rules.root = ExtendedTrieNode(phrase_location=PhraseLocation())
  *         if alignment is None:             # <<<<<<<<<<<<<<
@@ -39430,23 +39390,23 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_t_3 = (((PyObject *)__pyx_v_alignment) == Py_None);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":338
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":339
  *         self.rules.root = ExtendedTrieNode(phrase_location=PhraseLocation())
  *         if alignment is None:
  *             raise Exception("Must specify an alignment object")             # <<<<<<<<<<<<<<
  *         self.alignment = alignment
  * 
  */
-    __pyx_t_2 = PyObject_Call(__pyx_builtin_Exception, ((PyObject *)__pyx_k_tuple_107), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 338; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyObject_Call(__pyx_builtin_Exception, ((PyObject *)__pyx_k_tuple_107), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 339; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_2);
     __Pyx_Raise(__pyx_t_2, 0, 0, 0);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
-    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 338; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 339; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     goto __pyx_L3;
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":339
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":340
  *         if alignment is None:
  *             raise Exception("Must specify an alignment object")
  *         self.alignment = alignment             # <<<<<<<<<<<<<<
@@ -39459,7 +39419,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __Pyx_DECREF(((PyObject *)__pyx_v_self->alignment));
   __pyx_v_self->alignment = __pyx_v_alignment;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":343
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":344
  *         # grammar parameters and settings
  *         # NOTE: setting max_nonterminals > 2 is not currently supported in Hiero
  *         self.max_length = max_length             # <<<<<<<<<<<<<<
@@ -39468,7 +39428,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->max_length = __pyx_v_max_length;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":344
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":345
  *         # NOTE: setting max_nonterminals > 2 is not currently supported in Hiero
  *         self.max_length = max_length
  *         self.max_nonterminals = max_nonterminals             # <<<<<<<<<<<<<<
@@ -39477,7 +39437,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->max_nonterminals = __pyx_v_max_nonterminals;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":345
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":346
  *         self.max_length = max_length
  *         self.max_nonterminals = max_nonterminals
  *         self.max_initial_size = max_initial_size             # <<<<<<<<<<<<<<
@@ -39486,7 +39446,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->max_initial_size = __pyx_v_max_initial_size;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":346
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":347
  *         self.max_nonterminals = max_nonterminals
  *         self.max_initial_size = max_initial_size
  *         self.train_max_initial_size = train_max_initial_size             # <<<<<<<<<<<<<<
@@ -39495,7 +39455,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->train_max_initial_size = __pyx_v_train_max_initial_size;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":347
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":348
  *         self.max_initial_size = max_initial_size
  *         self.train_max_initial_size = train_max_initial_size
  *         self.min_gap_size = min_gap_size             # <<<<<<<<<<<<<<
@@ -39504,7 +39464,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->min_gap_size = __pyx_v_min_gap_size;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":348
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":349
  *         self.train_max_initial_size = train_max_initial_size
  *         self.min_gap_size = min_gap_size
  *         self.train_min_gap_size = train_min_gap_size             # <<<<<<<<<<<<<<
@@ -39513,7 +39473,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->train_min_gap_size = __pyx_v_train_min_gap_size;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":349
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":350
  *         self.min_gap_size = min_gap_size
  *         self.train_min_gap_size = train_min_gap_size
  *         self.category = sym_fromstring(category, False)             # <<<<<<<<<<<<<<
@@ -39522,7 +39482,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->category = __pyx_f_3_sa_sym_fromstring(__pyx_v_category, 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":351
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":352
  *         self.category = sym_fromstring(category, False)
  * 
  *         if max_chunks is None:             # <<<<<<<<<<<<<<
@@ -39532,7 +39492,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_t_3 = (__pyx_v_max_chunks == Py_None);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":352
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":353
  * 
  *         if max_chunks is None:
  *             self.max_chunks = self.max_nonterminals + 1             # <<<<<<<<<<<<<<
@@ -39544,19 +39504,19 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":354
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":355
  *             self.max_chunks = self.max_nonterminals + 1
  *         else:
  *             self.max_chunks = max_chunks             # <<<<<<<<<<<<<<
  * 
  *         if max_target_chunks is None:
  */
-    __pyx_t_4 = __Pyx_PyInt_AsInt(__pyx_v_max_chunks); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 354; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = __Pyx_PyInt_AsInt(__pyx_v_max_chunks); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 355; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_self->max_chunks = __pyx_t_4;
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":356
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":357
  *             self.max_chunks = max_chunks
  * 
  *         if max_target_chunks is None:             # <<<<<<<<<<<<<<
@@ -39566,7 +39526,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_t_3 = (__pyx_v_max_target_chunks == Py_None);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":357
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":358
  * 
  *         if max_target_chunks is None:
  *             self.max_target_chunks = self.max_nonterminals + 1             # <<<<<<<<<<<<<<
@@ -39578,19 +39538,19 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":359
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":360
  *             self.max_target_chunks = self.max_nonterminals + 1
  *         else:
  *             self.max_target_chunks = max_target_chunks             # <<<<<<<<<<<<<<
  * 
  *         if max_target_length is None:
  */
-    __pyx_t_4 = __Pyx_PyInt_AsInt(__pyx_v_max_target_chunks); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 359; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = __Pyx_PyInt_AsInt(__pyx_v_max_target_chunks); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 360; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_self->max_target_chunks = __pyx_t_4;
   }
   __pyx_L5:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":361
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":362
  *             self.max_target_chunks = max_target_chunks
  * 
  *         if max_target_length is None:             # <<<<<<<<<<<<<<
@@ -39600,7 +39560,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_t_3 = (__pyx_v_max_target_length == Py_None);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":362
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":363
  * 
  *         if max_target_length is None:
  *             self.max_target_length = max_initial_size             # <<<<<<<<<<<<<<
@@ -39612,26 +39572,26 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":364
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":365
  *             self.max_target_length = max_initial_size
  *         else:
  *             self.max_target_length = max_target_length             # <<<<<<<<<<<<<<
  * 
  *         # algorithmic parameters and settings
  */
-    __pyx_t_4 = __Pyx_PyInt_AsInt(__pyx_v_max_target_length); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 364; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = __Pyx_PyInt_AsInt(__pyx_v_max_target_length); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 365; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __pyx_v_self->max_target_length = __pyx_t_4;
   }
   __pyx_L6:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":367
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":368
  * 
  *         # algorithmic parameters and settings
  *         self.precomputed_collocations = {}             # <<<<<<<<<<<<<<
  *         self.precomputed_index = {}
  *         self.use_index = use_index
  */
-  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 367; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 368; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(((PyObject *)__pyx_t_2));
   __Pyx_GIVEREF(((PyObject *)__pyx_t_2));
   __Pyx_GOTREF(__pyx_v_self->precomputed_collocations);
@@ -39639,14 +39599,14 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->precomputed_collocations = ((PyObject *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":368
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":369
  *         # algorithmic parameters and settings
  *         self.precomputed_collocations = {}
  *         self.precomputed_index = {}             # <<<<<<<<<<<<<<
  *         self.use_index = use_index
  *         self.use_collocations = use_collocations
  */
-  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 368; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 369; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(((PyObject *)__pyx_t_2));
   __Pyx_GIVEREF(((PyObject *)__pyx_t_2));
   __Pyx_GOTREF(__pyx_v_self->precomputed_index);
@@ -39654,7 +39614,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->precomputed_index = ((PyObject *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":369
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":370
  *         self.precomputed_collocations = {}
  *         self.precomputed_index = {}
  *         self.use_index = use_index             # <<<<<<<<<<<<<<
@@ -39663,7 +39623,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->use_index = __pyx_v_use_index;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":370
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":371
  *         self.precomputed_index = {}
  *         self.use_index = use_index
  *         self.use_collocations = use_collocations             # <<<<<<<<<<<<<<
@@ -39672,14 +39632,14 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->use_collocations = __pyx_v_use_collocations;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":371
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":372
  *         self.use_index = use_index
  *         self.use_collocations = use_collocations
  *         self.max_rank = {}             # <<<<<<<<<<<<<<
  *         self.precompute_file = precompute_file
  *         self.precompute_rank = precompute_rank
  */
-  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 371; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(((PyObject *)__pyx_t_2));
   __Pyx_GIVEREF(((PyObject *)__pyx_t_2));
   __Pyx_GOTREF(__pyx_v_self->max_rank);
@@ -39687,7 +39647,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->max_rank = ((PyObject *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":372
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":373
  *         self.use_collocations = use_collocations
  *         self.max_rank = {}
  *         self.precompute_file = precompute_file             # <<<<<<<<<<<<<<
@@ -39700,7 +39660,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __Pyx_DECREF(__pyx_v_self->precompute_file);
   __pyx_v_self->precompute_file = __pyx_v_precompute_file;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":373
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":374
  *         self.max_rank = {}
  *         self.precompute_file = precompute_file
  *         self.precompute_rank = precompute_rank             # <<<<<<<<<<<<<<
@@ -39709,7 +39669,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->precompute_rank = __pyx_v_precompute_rank;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":374
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":375
  *         self.precompute_file = precompute_file
  *         self.precompute_rank = precompute_rank
  *         self.precompute_secondary_rank = precompute_secondary_rank             # <<<<<<<<<<<<<<
@@ -39718,7 +39678,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->precompute_secondary_rank = __pyx_v_precompute_secondary_rank;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":375
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":376
  *         self.precompute_rank = precompute_rank
  *         self.precompute_secondary_rank = precompute_secondary_rank
  *         self.use_baeza_yates = use_baeza_yates             # <<<<<<<<<<<<<<
@@ -39727,7 +39687,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->use_baeza_yates = __pyx_v_use_baeza_yates;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":376
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":377
  *         self.precompute_secondary_rank = precompute_secondary_rank
  *         self.use_baeza_yates = use_baeza_yates
  *         self.by_slack_factor = by_slack_factor             # <<<<<<<<<<<<<<
@@ -39736,7 +39696,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->by_slack_factor = __pyx_v_by_slack_factor;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":377
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":378
  *         self.use_baeza_yates = use_baeza_yates
  *         self.by_slack_factor = by_slack_factor
  *         self.tight_phrases = tight_phrases             # <<<<<<<<<<<<<<
@@ -39745,7 +39705,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->tight_phrases = __pyx_v_tight_phrases;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":379
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":380
  *         self.tight_phrases = tight_phrases
  * 
  *         if require_aligned_chunks:             # <<<<<<<<<<<<<<
@@ -39754,7 +39714,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   if (__pyx_v_require_aligned_chunks) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":381
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":382
  *         if require_aligned_chunks:
  *             # one condition is a stronger version of the other.
  *             self.require_aligned_chunks = self.require_aligned_terminal = True             # <<<<<<<<<<<<<<
@@ -39766,7 +39726,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
     goto __pyx_L7;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":382
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":383
  *             # one condition is a stronger version of the other.
  *             self.require_aligned_chunks = self.require_aligned_terminal = True
  *         elif require_aligned_terminal:             # <<<<<<<<<<<<<<
@@ -39775,7 +39735,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   if (__pyx_v_require_aligned_terminal) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":383
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":384
  *             self.require_aligned_chunks = self.require_aligned_terminal = True
  *         elif require_aligned_terminal:
  *             self.require_aligned_chunks = False             # <<<<<<<<<<<<<<
@@ -39784,7 +39744,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
     __pyx_v_self->require_aligned_chunks = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":384
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":385
  *         elif require_aligned_terminal:
  *             self.require_aligned_chunks = False
  *             self.require_aligned_terminal = True             # <<<<<<<<<<<<<<
@@ -39796,7 +39756,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":386
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":387
  *             self.require_aligned_terminal = True
  *         else:
  *             self.require_aligned_chunks = self.require_aligned_terminal = False             # <<<<<<<<<<<<<<
@@ -39808,7 +39768,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   }
   __pyx_L7:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":389
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":390
  * 
  *         # diagnostics
  *         self.prev_norm_prefix = ()             # <<<<<<<<<<<<<<
@@ -39821,17 +39781,17 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __Pyx_DECREF(__pyx_v_self->prev_norm_prefix);
   __pyx_v_self->prev_norm_prefix = ((PyObject *)__pyx_empty_tuple);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":391
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":392
  *         self.prev_norm_prefix = ()
  * 
  *         self.findexes = IntList(initial_len=10)             # <<<<<<<<<<<<<<
  *         self.findexes1 = IntList(initial_len=10)
  * 
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-  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 391; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  if (PyDict_SetItem(__pyx_t_2, ((PyObject *)__pyx_n_s__initial_len), __pyx_int_10) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 391; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 391; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyDict_SetItem(__pyx_t_2, ((PyObject *)__pyx_n_s__initial_len), __pyx_int_10) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
   __Pyx_GIVEREF(__pyx_t_1);
@@ -39840,17 +39800,17 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->findexes = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":392
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":393
  * 
  *         self.findexes = IntList(initial_len=10)
  *         self.findexes1 = IntList(initial_len=10)             # <<<<<<<<<<<<<<
  * 
  *         # Online stats
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-  __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 393; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  if (PyDict_SetItem(__pyx_t_1, ((PyObject *)__pyx_n_s__initial_len), __pyx_int_10) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __pyx_t_2 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_1)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 392; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyDict_SetItem(__pyx_t_1, ((PyObject *)__pyx_n_s__initial_len), __pyx_int_10) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 393; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_1)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 393; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
   __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
   __Pyx_GIVEREF(__pyx_t_2);
@@ -39859,7 +39819,7 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->findexes1 = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_2);
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":397
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":398
  * 
  *         # True after data is added
  *         self.online = False             # <<<<<<<<<<<<<<
@@ -39868,21 +39828,21 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
  */
   __pyx_v_self->online = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":400
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":401
  * 
  *         # Keep track of everything that can be sampled:
  *         self.samples_f = defaultdict(int)             # <<<<<<<<<<<<<<
  * 
  *         # Phrase counts
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-  __pyx_t_2 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 400; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 401; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 400; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 401; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __Pyx_INCREF(((PyObject *)((PyObject*)(&PyInt_Type))));
   PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)((PyObject*)(&PyInt_Type))));
   __Pyx_GIVEREF(((PyObject *)((PyObject*)(&PyInt_Type))));
-  __pyx_t_5 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 400; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_5 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 401; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
@@ -39892,21 +39852,21 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->samples_f = __pyx_t_5;
   __pyx_t_5 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":403
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":404
  * 
  *         # Phrase counts
  *         self.phrases_f = defaultdict(int)             # <<<<<<<<<<<<<<
  *         self.phrases_e = defaultdict(int)
  *         self.phrases_fe = defaultdict(lambda: defaultdict(int))
  */
-  __pyx_t_5 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 403; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_5 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 404; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_5);
-  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 403; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 404; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __Pyx_INCREF(((PyObject *)((PyObject*)(&PyInt_Type))));
   PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)((PyObject*)(&PyInt_Type))));
   __Pyx_GIVEREF(((PyObject *)((PyObject*)(&PyInt_Type))));
-  __pyx_t_2 = PyObject_Call(__pyx_t_5, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 403; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyObject_Call(__pyx_t_5, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 404; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -39916,21 +39876,21 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->phrases_f = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":404
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":405
  *         # Phrase counts
  *         self.phrases_f = defaultdict(int)
  *         self.phrases_e = defaultdict(int)             # <<<<<<<<<<<<<<
  *         self.phrases_fe = defaultdict(lambda: defaultdict(int))
  *         self.phrases_al = defaultdict(lambda: defaultdict(tuple))
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-  __pyx_t_2 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 404; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 405; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 404; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 405; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __Pyx_INCREF(((PyObject *)((PyObject*)(&PyInt_Type))));
   PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)((PyObject*)(&PyInt_Type))));
   __Pyx_GIVEREF(((PyObject *)((PyObject*)(&PyInt_Type))));
-  __pyx_t_5 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 404; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_5 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 405; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_5);
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
@@ -39940,23 +39900,23 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->phrases_e = __pyx_t_5;
   __pyx_t_5 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":405
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":406
  *         self.phrases_f = defaultdict(int)
  *         self.phrases_e = defaultdict(int)
  *         self.phrases_fe = defaultdict(lambda: defaultdict(int))             # <<<<<<<<<<<<<<
  *         self.phrases_al = defaultdict(lambda: defaultdict(tuple))
  * 
  */
-  __pyx_t_5 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 405; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_5 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 406; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3_sa_23HieroCachingRuleFactory_9__cinit___lambda1, 0, NULL, __pyx_n_s___sa, NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 405; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3_sa_23HieroCachingRuleFactory_9__cinit___lambda1, 0, NULL, __pyx_n_s___sa, NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 406; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 405; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 406; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
   PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
   __Pyx_GIVEREF(__pyx_t_1);
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-  __pyx_t_1 = PyObject_Call(__pyx_t_5, ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 405; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(__pyx_t_5, ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 406; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
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@@ -39966,23 +39926,23 @@ static int __pyx_pf_3_sa_23HieroCachingRuleFactory___cinit__(struct __pyx_obj_3_
   __pyx_v_self->phrases_fe = __pyx_t_1;
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":406
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":407
  *         self.phrases_e = defaultdict(int)
  *         self.phrases_fe = defaultdict(lambda: defaultdict(int))
  *         self.phrases_al = defaultdict(lambda: defaultdict(tuple))             # <<<<<<<<<<<<<<
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  *         # Bilexical counts
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-  __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 406; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__defaultdict); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 407; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
-  __pyx_t_2 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3_sa_23HieroCachingRuleFactory_9__cinit___1lambda2, 0, NULL, __pyx_n_s___sa, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 406; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3_sa_23HieroCachingRuleFactory_9__cinit___1lambda2, 0, NULL, __pyx_n_s___sa, NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 407; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  __pyx_t_5 = PyTuple_New(1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 407; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":409
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":410
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":410
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+  __pyx_t_2 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_5), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 411; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":411
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+  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_scorer), __pyx_ptype_3_sa_Scorer, 1, "scorer", 0))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 415; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":419
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":420
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":421
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":422
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":423
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":424
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":425
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":426
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":427
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":431
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":432
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":433
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":434
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":435
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":436
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":436
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":437
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":439
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":441
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":442
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":442
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":443
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":443
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":444
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":445
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":446
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":448
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":450
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-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":452
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":455
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":456
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":459
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":480
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@@ -41106,43 +41059,43 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_8precompute(struct __py
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":482
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":483
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":484
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":485
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":485
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":486
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":503
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":504
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":505
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-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":508
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":521
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":523
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":524
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":525
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":529
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":530
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":533
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":534
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":540
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  *         if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) == 1:             # <<<<<<<<<<<<<<
@@ -41865,7 +41930,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   __pyx_t_3 = (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings(__pyx_v_self, (&__pyx_v_loc1), (&__pyx_v_loc2), __pyx_v_offset_by_one, __pyx_v_len_last) == 1);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":541
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":542
  *         assign_matching(&loc2, arr2, high2-step2, step2, self.fda.sent_id.arr)
  *         if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) == 1:
  *             return result             # <<<<<<<<<<<<<<
@@ -41878,7 +41943,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   }
   __pyx_L6:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":545
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":546
  *         # Case 3: query set and data set do not meet size mismatch constraints;
  *         # We use mergesort instead in this case
  *         qsetsize = (high1-low1) / step1             # <<<<<<<<<<<<<<
@@ -41888,15 +41953,15 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   __pyx_t_4 = (__pyx_v_high1 - __pyx_v_low1);
   if (unlikely(__pyx_v_step1 == 0)) {
     PyErr_Format(PyExc_ZeroDivisionError, "integer division or modulo by zero");
-    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 545; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 546; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   }
   else if (sizeof(int) == sizeof(long) && unlikely(__pyx_v_step1 == -1) && unlikely(UNARY_NEG_WOULD_OVERFLOW(__pyx_t_4))) {
     PyErr_Format(PyExc_OverflowError, "value too large to perform division");
-    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 545; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 546; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   }
   __pyx_v_qsetsize = __Pyx_div_int(__pyx_t_4, __pyx_v_step1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":546
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":547
  *         # We use mergesort instead in this case
  *         qsetsize = (high1-low1) / step1
  *         dsetsize = (high2-low2) / step2             # <<<<<<<<<<<<<<
@@ -41906,15 +41971,15 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   __pyx_t_4 = (__pyx_v_high2 - __pyx_v_low2);
   if (unlikely(__pyx_v_step2 == 0)) {
     PyErr_Format(PyExc_ZeroDivisionError, "integer division or modulo by zero");
-    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 546; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 547; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   }
   else if (sizeof(int) == sizeof(long) && unlikely(__pyx_v_step2 == -1) && unlikely(UNARY_NEG_WOULD_OVERFLOW(__pyx_t_4))) {
     PyErr_Format(PyExc_OverflowError, "value too large to perform division");
-    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 546; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 547; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   }
   __pyx_v_dsetsize = __Pyx_div_int(__pyx_t_4, __pyx_v_step2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":547
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":548
  *         qsetsize = (high1-low1) / step1
  *         dsetsize = (high2-low2) / step2
  *         if d_first:             # <<<<<<<<<<<<<<
@@ -41923,7 +41988,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   if (__pyx_v_d_first) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":548
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":549
  *         dsetsize = (high2-low2) / step2
  *         if d_first:
  *             tmp = qsetsize             # <<<<<<<<<<<<<<
@@ -41932,7 +41997,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_tmp = __pyx_v_qsetsize;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":549
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":550
  *         if d_first:
  *             tmp = qsetsize
  *             qsetsize = dsetsize             # <<<<<<<<<<<<<<
@@ -41941,7 +42006,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_qsetsize = __pyx_v_dsetsize;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":550
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":551
  *             tmp = qsetsize
  *             qsetsize = dsetsize
  *             dsetsize = tmp             # <<<<<<<<<<<<<<
@@ -41953,7 +42018,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   }
   __pyx_L7:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":552
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":553
  *             dsetsize = tmp
  * 
  *         if self.by_slack_factor * qsetsize * log(dsetsize) / log(2) > dsetsize:             # <<<<<<<<<<<<<<
@@ -41964,12 +42029,12 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   __pyx_t_6 = log(2.0);
   if (unlikely(__pyx_t_6 == 0)) {
     PyErr_Format(PyExc_ZeroDivisionError, "float division");
-    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 552; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 553; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   }
   __pyx_t_3 = ((__pyx_t_5 / __pyx_t_6) > __pyx_v_dsetsize);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":553
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":554
  * 
  *         if self.by_slack_factor * qsetsize * log(dsetsize) / log(2) > dsetsize:
  *             free(result)             # <<<<<<<<<<<<<<
@@ -41978,7 +42043,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     free(__pyx_v_result);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":554
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":555
  *         if self.by_slack_factor * qsetsize * log(dsetsize) / log(2) > dsetsize:
  *             free(result)
  *             return self.merge_helper(low1, high1, arr1, step1, low2, high2, arr2, step2, offset_by_one, len_last, num_subpatterns, result_len)             # <<<<<<<<<<<<<<
@@ -41991,7 +42056,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   }
   __pyx_L8:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":558
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":559
  *         # binary search.    There are two flavors, depending on
  *         # whether the queryset or dataset is first
  *         if d_first:             # <<<<<<<<<<<<<<
@@ -42000,7 +42065,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   if (__pyx_v_d_first) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":559
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":560
  *         # whether the queryset or dataset is first
  *         if d_first:
  *             med2 = median(low2, high2, step2)             # <<<<<<<<<<<<<<
@@ -42009,7 +42074,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_med2 = __pyx_f_3_sa_median(__pyx_v_low2, __pyx_v_high2, __pyx_v_step2);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":560
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":561
  *         if d_first:
  *             med2 = median(low2, high2, step2)
  *             assign_matching(&loc2, arr2, med2, step2, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -42018,7 +42083,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_f_3_sa_assign_matching((&__pyx_v_loc2), __pyx_v_arr2, __pyx_v_med2, __pyx_v_step2, __pyx_v_self->fda->sent_id->arr);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":562
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":563
  *             assign_matching(&loc2, arr2, med2, step2, self.fda.sent_id.arr)
  * 
  *             search_low = low1             # <<<<<<<<<<<<<<
@@ -42027,7 +42092,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_search_low = __pyx_v_low1;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":563
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":564
  * 
  *             search_low = low1
  *             search_high = high1             # <<<<<<<<<<<<<<
@@ -42036,7 +42101,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_search_high = __pyx_v_high1;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":564
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":565
  *             search_low = low1
  *             search_high = high1
  *             while search_low < search_high:             # <<<<<<<<<<<<<<
@@ -42047,7 +42112,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_t_3 = (__pyx_v_search_low < __pyx_v_search_high);
       if (!__pyx_t_3) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":565
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":566
  *             search_high = high1
  *             while search_low < search_high:
  *                 med1 = median(search_low, search_high, step1)             # <<<<<<<<<<<<<<
@@ -42056,7 +42121,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_med1 = __pyx_f_3_sa_median(__pyx_v_search_low, __pyx_v_search_high, __pyx_v_step1);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":566
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":567
  *             while search_low < search_high:
  *                 med1 = median(search_low, search_high, step1)
  *                 find_comparable_matchings(low1, high1, arr1, step1, med1, &med1_minus, &med1_plus)             # <<<<<<<<<<<<<<
@@ -42065,7 +42130,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_f_3_sa_find_comparable_matchings(__pyx_v_low1, __pyx_v_high1, __pyx_v_arr1, __pyx_v_step1, __pyx_v_med1, (&__pyx_v_med1_minus), (&__pyx_v_med1_plus));
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":567
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":568
  *                 med1 = median(search_low, search_high, step1)
  *                 find_comparable_matchings(low1, high1, arr1, step1, med1, &med1_minus, &med1_plus)
  *                 comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last)             # <<<<<<<<<<<<<<
@@ -42074,7 +42139,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_comparison = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings_set(__pyx_v_self, __pyx_v_med1_minus, __pyx_v_med1_plus, __pyx_v_arr1, __pyx_v_step1, (&__pyx_v_loc2), __pyx_v_offset_by_one, __pyx_v_len_last);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":570
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":571
  *                 if comparison == -1:
  *                     search_low = med1_plus
  *                 elif comparison == 1:             # <<<<<<<<<<<<<<
@@ -42083,7 +42148,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       switch (__pyx_v_comparison) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":568
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":569
  *                 find_comparable_matchings(low1, high1, arr1, step1, med1, &med1_minus, &med1_plus)
  *                 comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last)
  *                 if comparison == -1:             # <<<<<<<<<<<<<<
@@ -42092,7 +42157,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         case -1:
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":569
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":570
  *                 comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last)
  *                 if comparison == -1:
  *                     search_low = med1_plus             # <<<<<<<<<<<<<<
@@ -42102,7 +42167,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         __pyx_v_search_low = __pyx_v_med1_plus;
         break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":570
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":571
  *                 if comparison == -1:
  *                     search_low = med1_plus
  *                 elif comparison == 1:             # <<<<<<<<<<<<<<
@@ -42111,7 +42176,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         case 1:
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":571
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":572
  *                     search_low = med1_plus
  *                 elif comparison == 1:
  *                     search_high = med1_minus             # <<<<<<<<<<<<<<
@@ -42122,7 +42187,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         break;
         default:
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":573
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":574
  *                     search_high = med1_minus
  *                 else:
  *                     break             # <<<<<<<<<<<<<<
@@ -42138,7 +42203,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":575
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":576
  *                     break
  *         else:
  *             med1 = median(low1, high1, step1)             # <<<<<<<<<<<<<<
@@ -42147,7 +42212,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_med1 = __pyx_f_3_sa_median(__pyx_v_low1, __pyx_v_high1, __pyx_v_step1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":576
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":577
  *         else:
  *             med1 = median(low1, high1, step1)
  *             find_comparable_matchings(low1, high1, arr1, step1, med1, &med1_minus, &med1_plus)             # <<<<<<<<<<<<<<
@@ -42156,7 +42221,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_f_3_sa_find_comparable_matchings(__pyx_v_low1, __pyx_v_high1, __pyx_v_arr1, __pyx_v_step1, __pyx_v_med1, (&__pyx_v_med1_minus), (&__pyx_v_med1_plus));
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":578
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":579
  *             find_comparable_matchings(low1, high1, arr1, step1, med1, &med1_minus, &med1_plus)
  * 
  *             search_low = low2             # <<<<<<<<<<<<<<
@@ -42165,7 +42230,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_search_low = __pyx_v_low2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":579
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":580
  * 
  *             search_low = low2
  *             search_high = high2             # <<<<<<<<<<<<<<
@@ -42174,7 +42239,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_search_high = __pyx_v_high2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":580
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":581
  *             search_low = low2
  *             search_high = high2
  *             while search_low < search_high:             # <<<<<<<<<<<<<<
@@ -42185,7 +42250,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_t_3 = (__pyx_v_search_low < __pyx_v_search_high);
       if (!__pyx_t_3) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":581
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":582
  *             search_high = high2
  *             while search_low < search_high:
  *                 med2 = median(search_low, search_high, step2)             # <<<<<<<<<<<<<<
@@ -42194,7 +42259,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_med2 = __pyx_f_3_sa_median(__pyx_v_search_low, __pyx_v_search_high, __pyx_v_step2);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":582
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":583
  *             while search_low < search_high:
  *                 med2 = median(search_low, search_high, step2)
  *                 assign_matching(&loc2, arr2, med2, step2, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -42203,7 +42268,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_f_3_sa_assign_matching((&__pyx_v_loc2), __pyx_v_arr2, __pyx_v_med2, __pyx_v_step2, __pyx_v_self->fda->sent_id->arr);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":583
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":584
  *                 med2 = median(search_low, search_high, step2)
  *                 assign_matching(&loc2, arr2, med2, step2, self.fda.sent_id.arr)
  *                 comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last)             # <<<<<<<<<<<<<<
@@ -42212,7 +42277,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_comparison = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings_set(__pyx_v_self, __pyx_v_med1_minus, __pyx_v_med1_plus, __pyx_v_arr1, __pyx_v_step1, (&__pyx_v_loc2), __pyx_v_offset_by_one, __pyx_v_len_last);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":586
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":587
  *                 if comparison == -1:
  *                     search_high = med2
  *                 elif comparison == 1:             # <<<<<<<<<<<<<<
@@ -42221,7 +42286,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       switch (__pyx_v_comparison) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":584
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":585
  *                 assign_matching(&loc2, arr2, med2, step2, self.fda.sent_id.arr)
  *                 comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last)
  *                 if comparison == -1:             # <<<<<<<<<<<<<<
@@ -42230,7 +42295,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         case -1:
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":585
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":586
  *                 comparison = self.compare_matchings_set(med1_minus, med1_plus, arr1, step1, &loc2, offset_by_one, len_last)
  *                 if comparison == -1:
  *                     search_high = med2             # <<<<<<<<<<<<<<
@@ -42240,7 +42305,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         __pyx_v_search_high = __pyx_v_med2;
         break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":586
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":587
  *                 if comparison == -1:
  *                     search_high = med2
  *                 elif comparison == 1:             # <<<<<<<<<<<<<<
@@ -42249,7 +42314,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         case 1:
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":587
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":588
  *                     search_high = med2
  *                 elif comparison == 1:
  *                     search_low = med2 + step2             # <<<<<<<<<<<<<<
@@ -42260,7 +42325,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         break;
         default:
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":589
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":590
  *                     search_low = med2 + step2
  *                 else:
  *                     break             # <<<<<<<<<<<<<<
@@ -42275,7 +42340,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   }
   __pyx_L9:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":591
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":592
  *                     break
  * 
  *         med_result_len = 0             # <<<<<<<<<<<<<<
@@ -42284,7 +42349,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_med_result_len = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":592
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":593
  * 
  *         med_result_len = 0
  *         med_result = <int*> malloc(0*sizeof(int*))             # <<<<<<<<<<<<<<
@@ -42293,7 +42358,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_med_result = ((int *)malloc((0 * (sizeof(int *)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":593
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":594
  *         med_result_len = 0
  *         med_result = <int*> malloc(0*sizeof(int*))
  *         if search_high > search_low:             # <<<<<<<<<<<<<<
@@ -42303,7 +42368,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   __pyx_t_3 = (__pyx_v_search_high > __pyx_v_search_low);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":599
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":600
  *             # want to store the bindings for all of those elements.    We can
  *             # subsequently throw all of them away.
  *             med2_minus = med2             # <<<<<<<<<<<<<<
@@ -42312,7 +42377,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_med2_minus = __pyx_v_med2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":600
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":601
  *             # subsequently throw all of them away.
  *             med2_minus = med2
  *             med2_plus = med2 + step2             # <<<<<<<<<<<<<<
@@ -42321,7 +42386,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_med2_plus = (__pyx_v_med2 + __pyx_v_step2);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":601
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":602
  *             med2_minus = med2
  *             med2_plus = med2 + step2
  *             i1 = med1_minus             # <<<<<<<<<<<<<<
@@ -42330,7 +42395,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_i1 = __pyx_v_med1_minus;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":602
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":603
  *             med2_plus = med2 + step2
  *             i1 = med1_minus
  *             while i1 < med1_plus:             # <<<<<<<<<<<<<<
@@ -42341,7 +42406,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_t_3 = (__pyx_v_i1 < __pyx_v_med1_plus);
       if (!__pyx_t_3) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":603
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":604
  *             i1 = med1_minus
  *             while i1 < med1_plus:
  *                 assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -42350,7 +42415,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_f_3_sa_assign_matching((&__pyx_v_loc1), __pyx_v_arr1, __pyx_v_i1, __pyx_v_step1, __pyx_v_self->fda->sent_id->arr);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":604
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":605
  *             while i1 < med1_plus:
  *                 assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *                 while med2_minus-step2 >= low2:             # <<<<<<<<<<<<<<
@@ -42361,7 +42426,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         __pyx_t_3 = ((__pyx_v_med2_minus - __pyx_v_step2) >= __pyx_v_low2);
         if (!__pyx_t_3) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":605
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":606
  *                 assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *                 while med2_minus-step2 >= low2:
  *                     assign_matching(&loc2, arr2, med2_minus-step2, step2, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -42370,7 +42435,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         __pyx_f_3_sa_assign_matching((&__pyx_v_loc2), __pyx_v_arr2, (__pyx_v_med2_minus - __pyx_v_step2), __pyx_v_step2, __pyx_v_self->fda->sent_id->arr);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":606
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":607
  *                 while med2_minus-step2 >= low2:
  *                     assign_matching(&loc2, arr2, med2_minus-step2, step2, self.fda.sent_id.arr)
  *                     if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) < 1:             # <<<<<<<<<<<<<<
@@ -42380,7 +42445,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         __pyx_t_3 = (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings(__pyx_v_self, (&__pyx_v_loc1), (&__pyx_v_loc2), __pyx_v_offset_by_one, __pyx_v_len_last) < 1);
         if (__pyx_t_3) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":607
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":608
  *                     assign_matching(&loc2, arr2, med2_minus-step2, step2, self.fda.sent_id.arr)
  *                     if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) < 1:
  *                         med2_minus = med2_minus - step2             # <<<<<<<<<<<<<<
@@ -42392,7 +42457,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":609
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":610
  *                         med2_minus = med2_minus - step2
  *                     else:
  *                         break             # <<<<<<<<<<<<<<
@@ -42405,7 +42470,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       }
       __pyx_L18_break:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":610
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":611
  *                     else:
  *                         break
  *                 i2 = med2_minus             # <<<<<<<<<<<<<<
@@ -42414,7 +42479,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_i2 = __pyx_v_med2_minus;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":611
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":612
  *                         break
  *                 i2 = med2_minus
  *                 while i2 < high2:             # <<<<<<<<<<<<<<
@@ -42425,7 +42490,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         __pyx_t_3 = (__pyx_v_i2 < __pyx_v_high2);
         if (!__pyx_t_3) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":612
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":613
  *                 i2 = med2_minus
  *                 while i2 < high2:
  *                     assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -42434,7 +42499,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         __pyx_f_3_sa_assign_matching((&__pyx_v_loc2), __pyx_v_arr2, __pyx_v_i2, __pyx_v_step2, __pyx_v_self->fda->sent_id->arr);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":613
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":614
  *                 while i2 < high2:
  *                     assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr)
  *                     comparison = self.compare_matchings(&loc1, &loc2, offset_by_one, len_last)             # <<<<<<<<<<<<<<
@@ -42443,7 +42508,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         __pyx_v_comparison = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings(__pyx_v_self, (&__pyx_v_loc1), (&__pyx_v_loc2), __pyx_v_offset_by_one, __pyx_v_len_last);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":614
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":615
  *                     assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr)
  *                     comparison = self.compare_matchings(&loc1, &loc2, offset_by_one, len_last)
  *                     if comparison == 0:             # <<<<<<<<<<<<<<
@@ -42453,7 +42518,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         __pyx_t_3 = (__pyx_v_comparison == 0);
         if (__pyx_t_3) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":616
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":617
  *                     if comparison == 0:
  *                         pass
  *                         med_result = append_combined_matching(med_result, &loc1, &loc2, offset_by_one, num_subpatterns, &med_result_len)             # <<<<<<<<<<<<<<
@@ -42465,7 +42530,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         }
         __pyx_L22:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":617
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":618
  *                         pass
  *                         med_result = append_combined_matching(med_result, &loc1, &loc2, offset_by_one, num_subpatterns, &med_result_len)
  *                     if comparison == -1:             # <<<<<<<<<<<<<<
@@ -42475,7 +42540,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         __pyx_t_3 = (__pyx_v_comparison == -1);
         if (__pyx_t_3) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":618
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":619
  *                         med_result = append_combined_matching(med_result, &loc1, &loc2, offset_by_one, num_subpatterns, &med_result_len)
  *                     if comparison == -1:
  *                         break             # <<<<<<<<<<<<<<
@@ -42487,7 +42552,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
         }
         __pyx_L23:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":619
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":620
  *                     if comparison == -1:
  *                         break
  *                     i2 = i2 + step2             # <<<<<<<<<<<<<<
@@ -42498,7 +42563,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       }
       __pyx_L21_break:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":620
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":621
  *                         break
  *                     i2 = i2 + step2
  *                 if i2 > med2_plus:             # <<<<<<<<<<<<<<
@@ -42508,7 +42573,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_t_3 = (__pyx_v_i2 > __pyx_v_med2_plus);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":621
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":622
  *                     i2 = i2 + step2
  *                 if i2 > med2_plus:
  *                     med2_plus = i2             # <<<<<<<<<<<<<<
@@ -42520,7 +42585,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       }
       __pyx_L24:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":622
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":623
  *                 if i2 > med2_plus:
  *                     med2_plus = i2
  *                 i1 = i1 + step1             # <<<<<<<<<<<<<<
@@ -42530,7 +42595,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_v_i1 = (__pyx_v_i1 + __pyx_v_step1);
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":624
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":625
  *                 i1 = i1 + step1
  * 
  *             tmp = med1_minus             # <<<<<<<<<<<<<<
@@ -42539,7 +42604,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_tmp = __pyx_v_med1_minus;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":625
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":626
  * 
  *             tmp = med1_minus
  *             med1_minus = med1_plus             # <<<<<<<<<<<<<<
@@ -42548,7 +42613,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_med1_minus = __pyx_v_med1_plus;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":626
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":627
  *             tmp = med1_minus
  *             med1_minus = med1_plus
  *             med1_plus = tmp             # <<<<<<<<<<<<<<
@@ -42560,7 +42625,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":629
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":630
  *         else:
  *             # No match; need to figure out the point of division in D and Q
  *             med2_minus = med2             # <<<<<<<<<<<<<<
@@ -42569,7 +42634,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_med2_minus = __pyx_v_med2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":630
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":631
  *             # No match; need to figure out the point of division in D and Q
  *             med2_minus = med2
  *             med2_plus = med2             # <<<<<<<<<<<<<<
@@ -42578,7 +42643,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     __pyx_v_med2_plus = __pyx_v_med2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":631
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":632
  *             med2_minus = med2
  *             med2_plus = med2
  *             if d_first:             # <<<<<<<<<<<<<<
@@ -42587,7 +42652,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
     if (__pyx_v_d_first) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":632
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":633
  *             med2_plus = med2
  *             if d_first:
  *                 med2_minus = med2_minus + step2             # <<<<<<<<<<<<<<
@@ -42596,7 +42661,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_med2_minus = (__pyx_v_med2_minus + __pyx_v_step2);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":633
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":634
  *             if d_first:
  *                 med2_minus = med2_minus + step2
  *                 if comparison == -1:             # <<<<<<<<<<<<<<
@@ -42606,7 +42671,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_t_3 = (__pyx_v_comparison == -1);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":634
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":635
  *                 med2_minus = med2_minus + step2
  *                 if comparison == -1:
  *                     med1_minus = med1_plus             # <<<<<<<<<<<<<<
@@ -42618,7 +42683,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       }
       __pyx_L26:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":635
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":636
  *                 if comparison == -1:
  *                     med1_minus = med1_plus
  *                 if comparison == 1:             # <<<<<<<<<<<<<<
@@ -42628,7 +42693,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_t_3 = (__pyx_v_comparison == 1);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":636
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":637
  *                     med1_minus = med1_plus
  *                 if comparison == 1:
  *                     med1_plus = med1_minus             # <<<<<<<<<<<<<<
@@ -42643,7 +42708,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":638
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":639
  *                     med1_plus = med1_minus
  *             else:
  *                 tmp = med1_minus             # <<<<<<<<<<<<<<
@@ -42652,7 +42717,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_tmp = __pyx_v_med1_minus;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":639
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":640
  *             else:
  *                 tmp = med1_minus
  *                 med1_minus = med1_plus             # <<<<<<<<<<<<<<
@@ -42661,7 +42726,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_med1_minus = __pyx_v_med1_plus;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":640
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":641
  *                 tmp = med1_minus
  *                 med1_minus = med1_plus
  *                 med1_plus = tmp             # <<<<<<<<<<<<<<
@@ -42670,7 +42735,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
       __pyx_v_med1_plus = __pyx_v_tmp;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":641
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":642
  *                 med1_minus = med1_plus
  *                 med1_plus = tmp
  *                 if comparison == 1:             # <<<<<<<<<<<<<<
@@ -42680,7 +42745,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
       __pyx_t_3 = (__pyx_v_comparison == 1);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":642
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":643
  *                 med1_plus = tmp
  *                 if comparison == 1:
  *                     med2_minus = med2_minus + step2             # <<<<<<<<<<<<<<
@@ -42689,7 +42754,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
         __pyx_v_med2_minus = (__pyx_v_med2_minus + __pyx_v_step2);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":643
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":644
  *                 if comparison == 1:
  *                     med2_minus = med2_minus + step2
  *                     med2_plus = med2_plus + step2             # <<<<<<<<<<<<<<
@@ -42705,7 +42770,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   }
   __pyx_L14:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":645
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":646
  *                     med2_plus = med2_plus + step2
  * 
  *         low_result_len = 0             # <<<<<<<<<<<<<<
@@ -42714,7 +42779,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_low_result_len = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":646
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":647
  * 
  *         low_result_len = 0
  *         low_result = self.baeza_yates_helper(low1, med1_plus, arr1, step1, low2, med2_plus, arr2, step2, offset_by_one, len_last, num_subpatterns, &low_result_len)             # <<<<<<<<<<<<<<
@@ -42723,7 +42788,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_low_result = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->baeza_yates_helper(__pyx_v_self, __pyx_v_low1, __pyx_v_med1_plus, __pyx_v_arr1, __pyx_v_step1, __pyx_v_low2, __pyx_v_med2_plus, __pyx_v_arr2, __pyx_v_step2, __pyx_v_offset_by_one, __pyx_v_len_last, __pyx_v_num_subpatterns, (&__pyx_v_low_result_len));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":647
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":648
  *         low_result_len = 0
  *         low_result = self.baeza_yates_helper(low1, med1_plus, arr1, step1, low2, med2_plus, arr2, step2, offset_by_one, len_last, num_subpatterns, &low_result_len)
  *         high_result_len = 0             # <<<<<<<<<<<<<<
@@ -42732,7 +42797,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_high_result_len = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":648
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":649
  *         low_result = self.baeza_yates_helper(low1, med1_plus, arr1, step1, low2, med2_plus, arr2, step2, offset_by_one, len_last, num_subpatterns, &low_result_len)
  *         high_result_len = 0
  *         high_result = self.baeza_yates_helper(med1_minus, high1, arr1, step1, med2_minus, high2, arr2, step2, offset_by_one, len_last, num_subpatterns, &high_result_len)             # <<<<<<<<<<<<<<
@@ -42741,7 +42806,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_high_result = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->baeza_yates_helper(__pyx_v_self, __pyx_v_med1_minus, __pyx_v_high1, __pyx_v_arr1, __pyx_v_step1, __pyx_v_med2_minus, __pyx_v_high2, __pyx_v_arr2, __pyx_v_step2, __pyx_v_offset_by_one, __pyx_v_len_last, __pyx_v_num_subpatterns, (&__pyx_v_high_result_len));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":650
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":651
  *         high_result = self.baeza_yates_helper(med1_minus, high1, arr1, step1, med2_minus, high2, arr2, step2, offset_by_one, len_last, num_subpatterns, &high_result_len)
  * 
  *         result = extend_arr(result, result_len, low_result, low_result_len)             # <<<<<<<<<<<<<<
@@ -42750,7 +42815,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_result = __pyx_f_3_sa_extend_arr(__pyx_v_result, __pyx_v_result_len, __pyx_v_low_result, __pyx_v_low_result_len);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":651
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":652
  * 
  *         result = extend_arr(result, result_len, low_result, low_result_len)
  *         result = extend_arr(result, result_len, med_result, med_result_len)             # <<<<<<<<<<<<<<
@@ -42759,7 +42824,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_result = __pyx_f_3_sa_extend_arr(__pyx_v_result, __pyx_v_result_len, __pyx_v_med_result, __pyx_v_med_result_len);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":652
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":653
  *         result = extend_arr(result, result_len, low_result, low_result_len)
  *         result = extend_arr(result, result_len, med_result, med_result_len)
  *         result = extend_arr(result, result_len, high_result, high_result_len)             # <<<<<<<<<<<<<<
@@ -42768,7 +42833,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   __pyx_v_result = __pyx_f_3_sa_extend_arr(__pyx_v_result, __pyx_v_result_len, __pyx_v_high_result, __pyx_v_high_result_len);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":653
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":654
  *         result = extend_arr(result, result_len, med_result, med_result_len)
  *         result = extend_arr(result, result_len, high_result, high_result_len)
  *         free(low_result)             # <<<<<<<<<<<<<<
@@ -42777,7 +42842,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   free(__pyx_v_low_result);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":654
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":655
  *         result = extend_arr(result, result_len, high_result, high_result_len)
  *         free(low_result)
  *         free(med_result)             # <<<<<<<<<<<<<<
@@ -42786,7 +42851,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   free(__pyx_v_med_result);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":655
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":656
  *         free(low_result)
  *         free(med_result)
  *         free(high_result)             # <<<<<<<<<<<<<<
@@ -42795,7 +42860,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
  */
   free(__pyx_v_high_result);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":657
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":658
  *         free(high_result)
  * 
  *         return result             # <<<<<<<<<<<<<<
@@ -42815,7 +42880,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_baeza_yates_helper(struct __p
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":661
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":662
  * 
  * 
  *     cdef long compare_matchings_set(self, int i1_minus, int i1_plus, int* arr1, int step1,             # <<<<<<<<<<<<<<
@@ -42834,7 +42899,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
   int __pyx_t_1;
   __Pyx_RefNannySetupContext("compare_matchings_set", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":672
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":673
  *         cdef Matching* loc1
  * 
  *         loc1 = &l1_stack             # <<<<<<<<<<<<<<
@@ -42843,7 +42908,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
  */
   __pyx_v_loc1 = (&__pyx_v_l1_stack);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":674
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":675
  *         loc1 = &l1_stack
  * 
  *         i1 = i1_minus             # <<<<<<<<<<<<<<
@@ -42852,7 +42917,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
  */
   __pyx_v_i1 = __pyx_v_i1_minus;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":675
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":676
  * 
  *         i1 = i1_minus
  *         while i1 < i1_plus:             # <<<<<<<<<<<<<<
@@ -42863,7 +42928,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
     __pyx_t_1 = (__pyx_v_i1 < __pyx_v_i1_plus);
     if (!__pyx_t_1) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":676
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":677
  *         i1 = i1_minus
  *         while i1 < i1_plus:
  *             assign_matching(loc1, arr1, i1, step1, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -42872,7 +42937,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
  */
     __pyx_f_3_sa_assign_matching(__pyx_v_loc1, __pyx_v_arr1, __pyx_v_i1, __pyx_v_step1, __pyx_v_self->fda->sent_id->arr);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":677
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":678
  *         while i1 < i1_plus:
  *             assign_matching(loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *             comparison = self.compare_matchings(loc1, loc2, offset_by_one, len_last)             # <<<<<<<<<<<<<<
@@ -42881,7 +42946,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
  */
     __pyx_v_comparison = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings(__pyx_v_self, __pyx_v_loc1, __pyx_v_loc2, __pyx_v_offset_by_one, __pyx_v_len_last);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":678
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":679
  *             assign_matching(loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *             comparison = self.compare_matchings(loc1, loc2, offset_by_one, len_last)
  *             if comparison == 0:             # <<<<<<<<<<<<<<
@@ -42891,7 +42956,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
     __pyx_t_1 = (__pyx_v_comparison == 0);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":679
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":680
  *             comparison = self.compare_matchings(loc1, loc2, offset_by_one, len_last)
  *             if comparison == 0:
  *                 prev_comparison = 0             # <<<<<<<<<<<<<<
@@ -42900,7 +42965,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
  */
       __pyx_v_prev_comparison = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":680
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":681
  *             if comparison == 0:
  *                 prev_comparison = 0
  *                 break             # <<<<<<<<<<<<<<
@@ -42911,7 +42976,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
       goto __pyx_L5;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":681
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":682
  *                 prev_comparison = 0
  *                 break
  *             elif i1 == i1_minus:             # <<<<<<<<<<<<<<
@@ -42921,7 +42986,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
     __pyx_t_1 = (__pyx_v_i1 == __pyx_v_i1_minus);
     if (__pyx_t_1) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":682
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":683
  *                 break
  *             elif i1 == i1_minus:
  *                 prev_comparison = comparison             # <<<<<<<<<<<<<<
@@ -42933,7 +42998,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":684
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":685
  *                 prev_comparison = comparison
  *             else:
  *                 if comparison != prev_comparison:             # <<<<<<<<<<<<<<
@@ -42943,7 +43008,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
       __pyx_t_1 = (__pyx_v_comparison != __pyx_v_prev_comparison);
       if (__pyx_t_1) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":685
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":686
  *             else:
  *                 if comparison != prev_comparison:
  *                     prev_comparison = 0             # <<<<<<<<<<<<<<
@@ -42952,7 +43017,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
  */
         __pyx_v_prev_comparison = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":686
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":687
  *                 if comparison != prev_comparison:
  *                     prev_comparison = 0
  *                     break             # <<<<<<<<<<<<<<
@@ -42966,7 +43031,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
     }
     __pyx_L5:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":687
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":688
  *                     prev_comparison = 0
  *                     break
  *             i1 = i1 + step1             # <<<<<<<<<<<<<<
@@ -42977,7 +43042,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
   }
   __pyx_L4_break:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":688
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":689
  *                     break
  *             i1 = i1 + step1
  *         return prev_comparison             # <<<<<<<<<<<<<<
@@ -42993,7 +43058,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings_set(struct
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":691
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":692
  * 
  * 
  *     cdef long compare_matchings(self, Matching* loc1, Matching* loc2, int offset_by_one, int len_last):             # <<<<<<<<<<<<<<
@@ -43011,7 +43076,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   int __pyx_t_4;
   __Pyx_RefNannySetupContext("compare_matchings", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":694
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":695
  *         cdef int i
  * 
  *         if loc1.sent_id > loc2.sent_id:             # <<<<<<<<<<<<<<
@@ -43021,7 +43086,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   __pyx_t_1 = (__pyx_v_loc1->sent_id > __pyx_v_loc2->sent_id);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":695
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":696
  * 
  *         if loc1.sent_id > loc2.sent_id:
  *             return 1             # <<<<<<<<<<<<<<
@@ -43034,7 +43099,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":696
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":697
  *         if loc1.sent_id > loc2.sent_id:
  *             return 1
  *         if loc2.sent_id > loc1.sent_id:             # <<<<<<<<<<<<<<
@@ -43044,7 +43109,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   __pyx_t_1 = (__pyx_v_loc2->sent_id > __pyx_v_loc1->sent_id);
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":697
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":698
  *             return 1
  *         if loc2.sent_id > loc1.sent_id:
  *             return -1             # <<<<<<<<<<<<<<
@@ -43057,7 +43122,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   }
   __pyx_L4:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":699
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":700
  *             return -1
  * 
  *         if loc1.size == 1 and loc2.size == 1:             # <<<<<<<<<<<<<<
@@ -43073,7 +43138,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   }
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":700
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":701
  * 
  *         if loc1.size == 1 and loc2.size == 1:
  *             if loc2.arr[loc2.start] - loc1.arr[loc1.start] <= self.train_min_gap_size:             # <<<<<<<<<<<<<<
@@ -43083,7 +43148,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     __pyx_t_3 = (((__pyx_v_loc2->arr[__pyx_v_loc2->start]) - (__pyx_v_loc1->arr[__pyx_v_loc1->start])) <= __pyx_v_self->train_min_gap_size);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":701
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":702
  *         if loc1.size == 1 and loc2.size == 1:
  *             if loc2.arr[loc2.start] - loc1.arr[loc1.start] <= self.train_min_gap_size:
  *                 return 1             # <<<<<<<<<<<<<<
@@ -43098,7 +43163,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     goto __pyx_L5;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":703
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":704
  *                 return 1
  * 
  *         elif offset_by_one:             # <<<<<<<<<<<<<<
@@ -43107,7 +43172,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
  */
   if (__pyx_v_offset_by_one) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":704
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":705
  * 
  *         elif offset_by_one:
  *             for i from 1 <= i < loc1.size:             # <<<<<<<<<<<<<<
@@ -43117,7 +43182,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     __pyx_t_4 = __pyx_v_loc1->size;
     for (__pyx_v_i = 1; __pyx_v_i < __pyx_t_4; __pyx_v_i++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":705
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":706
  *         elif offset_by_one:
  *             for i from 1 <= i < loc1.size:
  *                 if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i-1]:             # <<<<<<<<<<<<<<
@@ -43127,7 +43192,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
       __pyx_t_3 = ((__pyx_v_loc1->arr[(__pyx_v_loc1->start + __pyx_v_i)]) > (__pyx_v_loc2->arr[((__pyx_v_loc2->start + __pyx_v_i) - 1)]));
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":706
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":707
  *             for i from 1 <= i < loc1.size:
  *                 if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i-1]:
  *                     return 1             # <<<<<<<<<<<<<<
@@ -43140,7 +43205,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
       }
       __pyx_L9:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":707
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":708
  *                 if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i-1]:
  *                     return 1
  *                 if loc1.arr[loc1.start+i] < loc2.arr[loc2.start+i-1]:             # <<<<<<<<<<<<<<
@@ -43150,7 +43215,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
       __pyx_t_3 = ((__pyx_v_loc1->arr[(__pyx_v_loc1->start + __pyx_v_i)]) < (__pyx_v_loc2->arr[((__pyx_v_loc2->start + __pyx_v_i) - 1)]));
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":708
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":709
  *                     return 1
  *                 if loc1.arr[loc1.start+i] < loc2.arr[loc2.start+i-1]:
  *                     return -1             # <<<<<<<<<<<<<<
@@ -43167,7 +43232,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":711
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":712
  * 
  *         else:
  *             if loc1.arr[loc1.start]+1 > loc2.arr[loc2.start]:             # <<<<<<<<<<<<<<
@@ -43177,7 +43242,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     __pyx_t_3 = (((__pyx_v_loc1->arr[__pyx_v_loc1->start]) + 1) > (__pyx_v_loc2->arr[__pyx_v_loc2->start]));
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":712
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":713
  *         else:
  *             if loc1.arr[loc1.start]+1 > loc2.arr[loc2.start]:
  *                 return 1             # <<<<<<<<<<<<<<
@@ -43190,7 +43255,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     }
     __pyx_L11:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":713
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":714
  *             if loc1.arr[loc1.start]+1 > loc2.arr[loc2.start]:
  *                 return 1
  *             if loc1.arr[loc1.start]+1 < loc2.arr[loc2.start]:             # <<<<<<<<<<<<<<
@@ -43200,7 +43265,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     __pyx_t_3 = (((__pyx_v_loc1->arr[__pyx_v_loc1->start]) + 1) < (__pyx_v_loc2->arr[__pyx_v_loc2->start]));
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":714
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":715
  *                 return 1
  *             if loc1.arr[loc1.start]+1 < loc2.arr[loc2.start]:
  *                 return -1             # <<<<<<<<<<<<<<
@@ -43213,7 +43278,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     }
     __pyx_L12:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":716
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":717
  *                 return -1
  * 
  *             for i from 1 <= i < loc1.size:             # <<<<<<<<<<<<<<
@@ -43223,7 +43288,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
     __pyx_t_4 = __pyx_v_loc1->size;
     for (__pyx_v_i = 1; __pyx_v_i < __pyx_t_4; __pyx_v_i++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":717
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":718
  * 
  *             for i from 1 <= i < loc1.size:
  *                 if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i]:             # <<<<<<<<<<<<<<
@@ -43233,7 +43298,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
       __pyx_t_3 = ((__pyx_v_loc1->arr[(__pyx_v_loc1->start + __pyx_v_i)]) > (__pyx_v_loc2->arr[(__pyx_v_loc2->start + __pyx_v_i)]));
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":718
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":719
  *             for i from 1 <= i < loc1.size:
  *                 if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i]:
  *                     return 1             # <<<<<<<<<<<<<<
@@ -43246,7 +43311,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
       }
       __pyx_L15:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":719
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":720
  *                 if loc1.arr[loc1.start+i] > loc2.arr[loc2.start+i]:
  *                     return 1
  *                 if loc1.arr[loc1.start+i] < loc2.arr[loc2.start+i]:             # <<<<<<<<<<<<<<
@@ -43256,7 +43321,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
       __pyx_t_3 = ((__pyx_v_loc1->arr[(__pyx_v_loc1->start + __pyx_v_i)]) < (__pyx_v_loc2->arr[(__pyx_v_loc2->start + __pyx_v_i)]));
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":720
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":721
  *                     return 1
  *                 if loc1.arr[loc1.start+i] < loc2.arr[loc2.start+i]:
  *                     return -1             # <<<<<<<<<<<<<<
@@ -43272,7 +43337,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   }
   __pyx_L5:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":722
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":723
  *                     return -1
  * 
  *         if loc2.arr[loc2.end-1] + len_last - loc1.arr[loc1.start] > self.train_max_initial_size:             # <<<<<<<<<<<<<<
@@ -43282,7 +43347,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   __pyx_t_3 = ((((__pyx_v_loc2->arr[(__pyx_v_loc2->end - 1)]) + __pyx_v_len_last) - (__pyx_v_loc1->arr[__pyx_v_loc1->start])) > __pyx_v_self->train_max_initial_size);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":723
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":724
  * 
  *         if loc2.arr[loc2.end-1] + len_last - loc1.arr[loc1.start] > self.train_max_initial_size:
  *             return -1             # <<<<<<<<<<<<<<
@@ -43295,7 +43360,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   }
   __pyx_L17:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":724
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":725
  *         if loc2.arr[loc2.end-1] + len_last - loc1.arr[loc1.start] > self.train_max_initial_size:
  *             return -1
  *         return 0             # <<<<<<<<<<<<<<
@@ -43311,7 +43376,7 @@ static long __pyx_f_3_sa_23HieroCachingRuleFactory_compare_matchings(struct __py
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":727
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":728
  * 
  * 
  *     cdef int* merge_helper(self, int low1, int high1, int* arr1, int step1,             # <<<<<<<<<<<<<<
@@ -43335,7 +43400,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
   int __pyx_t_3;
   __Pyx_RefNannySetupContext("merge_helper", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":735
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":736
  *         cdef Matching loc1, loc2
  * 
  *         result_len[0] = 0             # <<<<<<<<<<<<<<
@@ -43344,7 +43409,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
   (__pyx_v_result_len[0]) = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":736
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":737
  * 
  *         result_len[0] = 0
  *         result = <int*> malloc(0*sizeof(int))             # <<<<<<<<<<<<<<
@@ -43353,7 +43418,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
   __pyx_v_result = ((int *)malloc((0 * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":738
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":739
  *         result = <int*> malloc(0*sizeof(int))
  * 
  *         i1 = low1             # <<<<<<<<<<<<<<
@@ -43362,7 +43427,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
   __pyx_v_i1 = __pyx_v_low1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":739
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":740
  * 
  *         i1 = low1
  *         i2 = low2             # <<<<<<<<<<<<<<
@@ -43371,7 +43436,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
   __pyx_v_i2 = __pyx_v_low2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":740
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":741
  *         i1 = low1
  *         i2 = low2
  *         while i1 < high1 and i2 < high2:             # <<<<<<<<<<<<<<
@@ -43388,7 +43453,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
     }
     if (!__pyx_t_3) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":743
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":744
  * 
  *             # First, pop all unneeded loc2's off the stack
  *             assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -43397,7 +43462,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
     __pyx_f_3_sa_assign_matching((&__pyx_v_loc1), __pyx_v_arr1, __pyx_v_i1, __pyx_v_step1, __pyx_v_self->fda->sent_id->arr);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":744
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":745
  *             # First, pop all unneeded loc2's off the stack
  *             assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *             while i2 < high2:             # <<<<<<<<<<<<<<
@@ -43408,7 +43473,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
       __pyx_t_3 = (__pyx_v_i2 < __pyx_v_high2);
       if (!__pyx_t_3) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":745
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":746
  *             assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *             while i2 < high2:
  *                 assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -43417,7 +43482,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
       __pyx_f_3_sa_assign_matching((&__pyx_v_loc2), __pyx_v_arr2, __pyx_v_i2, __pyx_v_step2, __pyx_v_self->fda->sent_id->arr);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":746
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":747
  *             while i2 < high2:
  *                 assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr)
  *                 if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) == 1:             # <<<<<<<<<<<<<<
@@ -43427,7 +43492,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
       __pyx_t_3 = (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings(__pyx_v_self, (&__pyx_v_loc1), (&__pyx_v_loc2), __pyx_v_offset_by_one, __pyx_v_len_last) == 1);
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":747
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":748
  *                 assign_matching(&loc2, arr2, i2, step2, self.fda.sent_id.arr)
  *                 if self.compare_matchings(&loc1, &loc2, offset_by_one, len_last) == 1:
  *                     i2 = i2 + step2             # <<<<<<<<<<<<<<
@@ -43439,7 +43504,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":749
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":750
  *                     i2 = i2 + step2
  *                 else:
  *                     break             # <<<<<<<<<<<<<<
@@ -43452,7 +43517,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
     }
     __pyx_L6_break:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":752
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":753
  * 
  *             # Next: process all loc1's with the same starting val
  *             j1 = i1             # <<<<<<<<<<<<<<
@@ -43461,7 +43526,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
     __pyx_v_j1 = __pyx_v_i1;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":753
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":754
  *             # Next: process all loc1's with the same starting val
  *             j1 = i1
  *             while i1 < high1 and arr1[j1] == arr1[i1]:             # <<<<<<<<<<<<<<
@@ -43478,7 +43543,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
       }
       if (!__pyx_t_2) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":754
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":755
  *             j1 = i1
  *             while i1 < high1 and arr1[j1] == arr1[i1]:
  *                 assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -43487,7 +43552,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
       __pyx_f_3_sa_assign_matching((&__pyx_v_loc1), __pyx_v_arr1, __pyx_v_i1, __pyx_v_step1, __pyx_v_self->fda->sent_id->arr);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":755
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":756
  *             while i1 < high1 and arr1[j1] == arr1[i1]:
  *                 assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *                 j2 = i2             # <<<<<<<<<<<<<<
@@ -43496,7 +43561,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
       __pyx_v_j2 = __pyx_v_i2;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":756
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":757
  *                 assign_matching(&loc1, arr1, i1, step1, self.fda.sent_id.arr)
  *                 j2 = i2
  *                 while j2 < high2:             # <<<<<<<<<<<<<<
@@ -43507,7 +43572,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
         __pyx_t_2 = (__pyx_v_j2 < __pyx_v_high2);
         if (!__pyx_t_2) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":757
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":758
  *                 j2 = i2
  *                 while j2 < high2:
  *                     assign_matching(&loc2, arr2, j2, step2, self.fda.sent_id.arr)             # <<<<<<<<<<<<<<
@@ -43516,7 +43581,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
         __pyx_f_3_sa_assign_matching((&__pyx_v_loc2), __pyx_v_arr2, __pyx_v_j2, __pyx_v_step2, __pyx_v_self->fda->sent_id->arr);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":758
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":759
  *                 while j2 < high2:
  *                     assign_matching(&loc2, arr2, j2, step2, self.fda.sent_id.arr)
  *                     comparison = self.compare_matchings(&loc1, &loc2, offset_by_one, len_last)             # <<<<<<<<<<<<<<
@@ -43525,7 +43590,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
  */
         __pyx_v_comparison = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->compare_matchings(__pyx_v_self, (&__pyx_v_loc1), (&__pyx_v_loc2), __pyx_v_offset_by_one, __pyx_v_len_last);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":759
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":760
  *                     assign_matching(&loc2, arr2, j2, step2, self.fda.sent_id.arr)
  *                     comparison = self.compare_matchings(&loc1, &loc2, offset_by_one, len_last)
  *                     if comparison == 0:             # <<<<<<<<<<<<<<
@@ -43535,7 +43600,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
         __pyx_t_2 = (__pyx_v_comparison == 0);
         if (__pyx_t_2) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":760
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":761
  *                     comparison = self.compare_matchings(&loc1, &loc2, offset_by_one, len_last)
  *                     if comparison == 0:
  *                         result = append_combined_matching(result, &loc1, &loc2, offset_by_one, num_subpatterns, result_len)             # <<<<<<<<<<<<<<
@@ -43547,7 +43612,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
         }
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":761
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":762
  *                     if comparison == 0:
  *                         result = append_combined_matching(result, &loc1, &loc2, offset_by_one, num_subpatterns, result_len)
  *                     if comparison == 1:             # <<<<<<<<<<<<<<
@@ -43560,7 +43625,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
         }
         __pyx_L13:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":763
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":764
  *                     if comparison == 1:
  *                         pass
  *                     if comparison == -1:             # <<<<<<<<<<<<<<
@@ -43570,7 +43635,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
         __pyx_t_2 = (__pyx_v_comparison == -1);
         if (__pyx_t_2) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":764
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":765
  *                         pass
  *                     if comparison == -1:
  *                         break             # <<<<<<<<<<<<<<
@@ -43582,7 +43647,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":766
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":767
  *                         break
  *                     else:
  *                         j2 = j2 + step2             # <<<<<<<<<<<<<<
@@ -43595,7 +43660,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
       }
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":767
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":768
  *                     else:
  *                         j2 = j2 + step2
  *                 i1 = i1 + step1             # <<<<<<<<<<<<<<
@@ -43606,7 +43671,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
     }
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":768
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":769
  *                         j2 = j2 + step2
  *                 i1 = i1 + step1
  *         return result             # <<<<<<<<<<<<<<
@@ -43622,7 +43687,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_merge_helper(struct __pyx_obj
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":771
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":772
  * 
  * 
  *     cdef void sort_phrase_loc(self, IntList arr, PhraseLocation loc, Phrase phrase):             # <<<<<<<<<<<<<<
@@ -43644,26 +43709,26 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":776
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":777
  *         cdef IntList result
  * 
  *         if phrase in self.precomputed_index:             # <<<<<<<<<<<<<<
  *             loc.arr = self.precomputed_index[phrase]
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-  __pyx_t_1 = (__Pyx_PySequence_Contains(((PyObject *)__pyx_v_phrase), __pyx_v_self->precomputed_index, Py_EQ)); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 776; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = ((PySequence_Contains(__pyx_v_self->precomputed_index, ((PyObject *)__pyx_v_phrase)))); if (unlikely(__pyx_t_1 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 777; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   if (__pyx_t_1) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":777
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":778
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  *         if phrase in self.precomputed_index:
  *             loc.arr = self.precomputed_index[phrase]             # <<<<<<<<<<<<<<
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  *             loc.arr = IntList(initial_len=loc.sa_high-loc.sa_low)
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-    __pyx_t_2 = PyObject_GetItem(__pyx_v_self->precomputed_index, ((PyObject *)__pyx_v_phrase)); if (!__pyx_t_2) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 777; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyObject_GetItem(__pyx_v_self->precomputed_index, ((PyObject *)__pyx_v_phrase)); if (!__pyx_t_2) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 778; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_2);
-    if (!(likely(((__pyx_t_2) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_2, __pyx_ptype_3_sa_IntList))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 777; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    if (!(likely(((__pyx_t_2) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_2, __pyx_ptype_3_sa_IntList))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 778; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -43673,20 +43738,20 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":779
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":780
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-    __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 779; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(((PyObject *)__pyx_t_2));
-    __pyx_t_3 = PyInt_FromLong((__pyx_v_loc->sa_high - __pyx_v_loc->sa_low)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 779; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_3 = PyInt_FromLong((__pyx_v_loc->sa_high - __pyx_v_loc->sa_low)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    if (PyDict_SetItem(__pyx_t_2, ((PyObject *)__pyx_n_s__initial_len), __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 779; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    if (PyDict_SetItem(__pyx_t_2, ((PyObject *)__pyx_n_s__initial_len), __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
-    __pyx_t_3 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 779; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_3 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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     __Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
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@@ -43695,27 +43760,27 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
     __pyx_v_loc->arr = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_3);
     __pyx_t_3 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":780
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":781
  *         else:
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-    __pyx_t_3 = PyInt_FromLong(__pyx_v_arr->len); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_3 = PyInt_FromLong(__pyx_v_arr->len); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 781; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 781; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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     __Pyx_GIVEREF(__pyx_t_3);
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-    __pyx_t_3 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_VEB)), ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_3 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_VEB)), ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 781; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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     __Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":781
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":782
  *             loc.arr = IntList(initial_len=loc.sa_high-loc.sa_low)
  *             veb = VEB(arr.len)
  *             for i from loc.sa_low <= i < loc.sa_high:             # <<<<<<<<<<<<<<
@@ -43725,7 +43790,7 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
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     for (__pyx_v_i = __pyx_v_loc->sa_low; __pyx_v_i < __pyx_t_4; __pyx_v_i++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":782
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":783
  *             veb = VEB(arr.len)
  *             for i from loc.sa_low <= i < loc.sa_high:
  *                 veb._insert(arr.arr[i])             # <<<<<<<<<<<<<<
@@ -43735,7 +43800,7 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
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     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":783
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":784
  *             for i from loc.sa_low <= i < loc.sa_high:
  *                 veb._insert(arr.arr[i])
  *             i = veb.veb.min_val             # <<<<<<<<<<<<<<
@@ -43744,7 +43809,7 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
  */
     __pyx_v_i = __pyx_v_veb->veb->min_val;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":784
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":785
  *                 veb._insert(arr.arr[i])
  *             i = veb.veb.min_val
  *             for j from 0 <= j < loc.sa_high-loc.sa_low:             # <<<<<<<<<<<<<<
@@ -43754,7 +43819,7 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":785
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":786
  *             i = veb.veb.min_val
  *             for j from 0 <= j < loc.sa_high-loc.sa_low:
  *                 loc.arr.arr[j] = i             # <<<<<<<<<<<<<<
@@ -43763,7 +43828,7 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
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       (__pyx_v_loc->arr->arr[__pyx_v_j]) = __pyx_v_i;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":786
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":787
  *             for j from 0 <= j < loc.sa_high-loc.sa_low:
  *                 loc.arr.arr[j] = i
  *                 i = veb._findsucc(i)             # <<<<<<<<<<<<<<
@@ -43775,7 +43840,7 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
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   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":787
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":788
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  *                 i = veb._findsucc(i)
  *         loc.arr_low = 0             # <<<<<<<<<<<<<<
@@ -43784,7 +43849,7 @@ static void __pyx_f_3_sa_23HieroCachingRuleFactory_sort_phrase_loc(struct __pyx_
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   __pyx_v_loc->arr_low = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":788
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":789
  *                 i = veb._findsucc(i)
  *         loc.arr_low = 0
  *         loc.arr_high = loc.arr.len             # <<<<<<<<<<<<<<
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-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":791
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":792
  * 
  * 
  *     cdef intersect_helper(self, Phrase prefix, Phrase suffix,             # <<<<<<<<<<<<<<
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":798
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":799
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  *         result_len = 0             # <<<<<<<<<<<<<<
@@ -43849,21 +43914,21 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":800
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":801
  *         result_len = 0
  * 
  *         if sym_isvar(suffix[0]):             # <<<<<<<<<<<<<<
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-  __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_suffix), 0, sizeof(long), PyInt_FromLong); if (!__pyx_t_1) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 800; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = __Pyx_GetItemInt(((PyObject *)__pyx_v_suffix), 0, sizeof(long), PyInt_FromLong); if (!__pyx_t_1) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_2 = __Pyx_PyInt_AsInt(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 800; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = __Pyx_PyInt_AsInt(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 801; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":801
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":802
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  *         if sym_isvar(suffix[0]):
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@@ -43875,7 +43940,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":803
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":804
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":805
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":806
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-  __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_suffix), __pyx_n_s__getchunk); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 805; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_suffix), __pyx_n_s__getchunk); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_4 = PyObject_GetAttr(((PyObject *)__pyx_v_suffix), __pyx_n_s__arity); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 805; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_4 = PyObject_GetAttr(((PyObject *)__pyx_v_suffix), __pyx_n_s__arity); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  __pyx_t_5 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  __pyx_t_4 = PyTuple_New(1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  __pyx_t_5 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_4), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_6 = PyObject_Length(__pyx_t_5); if (unlikely(__pyx_t_6 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 805; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_6 = PyObject_Length(__pyx_t_5); if (unlikely(__pyx_t_6 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 806; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":807
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":808
  *         len_last = len(suffix.getchunk(suffix.arity()))
  * 
  *         if prefix_loc.arr is None:             # <<<<<<<<<<<<<<
@@ -43923,7 +43988,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   __pyx_t_7 = (((PyObject *)__pyx_v_prefix_loc->arr) == Py_None);
   if (__pyx_t_7) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":808
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":809
  * 
  *         if prefix_loc.arr is None:
  *             self.sort_phrase_loc(self.fsa.sa, prefix_loc, prefix)             # <<<<<<<<<<<<<<
@@ -43938,7 +44003,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   }
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":809
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":810
  *         if prefix_loc.arr is None:
  *             self.sort_phrase_loc(self.fsa.sa, prefix_loc, prefix)
  *         arr1 = prefix_loc.arr             # <<<<<<<<<<<<<<
@@ -43948,7 +44013,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   __Pyx_INCREF(((PyObject *)__pyx_v_prefix_loc->arr));
   __pyx_v_arr1 = __pyx_v_prefix_loc->arr;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":810
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":811
  *             self.sort_phrase_loc(self.fsa.sa, prefix_loc, prefix)
  *         arr1 = prefix_loc.arr
  *         low1 = prefix_loc.arr_low             # <<<<<<<<<<<<<<
@@ -43957,7 +44022,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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   __pyx_v_low1 = __pyx_v_prefix_loc->arr_low;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":811
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":812
  *         arr1 = prefix_loc.arr
  *         low1 = prefix_loc.arr_low
  *         high1 = prefix_loc.arr_high             # <<<<<<<<<<<<<<
@@ -43966,7 +44031,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
  */
   __pyx_v_high1 = __pyx_v_prefix_loc->arr_high;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":812
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":813
  *         low1 = prefix_loc.arr_low
  *         high1 = prefix_loc.arr_high
  *         step1 = prefix_loc.num_subpatterns             # <<<<<<<<<<<<<<
@@ -43975,7 +44040,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
  */
   __pyx_v_step1 = __pyx_v_prefix_loc->num_subpatterns;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":814
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":815
  *         step1 = prefix_loc.num_subpatterns
  * 
  *         if suffix_loc.arr is None:             # <<<<<<<<<<<<<<
@@ -43985,7 +44050,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   __pyx_t_7 = (((PyObject *)__pyx_v_suffix_loc->arr) == Py_None);
   if (__pyx_t_7) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":815
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":816
  * 
  *         if suffix_loc.arr is None:
  *             self.sort_phrase_loc(self.fsa.sa, suffix_loc, suffix)             # <<<<<<<<<<<<<<
@@ -44000,7 +44065,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   }
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":816
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":817
  *         if suffix_loc.arr is None:
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  *         arr2 = suffix_loc.arr             # <<<<<<<<<<<<<<
@@ -44010,7 +44075,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   __Pyx_INCREF(((PyObject *)__pyx_v_suffix_loc->arr));
   __pyx_v_arr2 = __pyx_v_suffix_loc->arr;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":817
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":818
  *             self.sort_phrase_loc(self.fsa.sa, suffix_loc, suffix)
  *         arr2 = suffix_loc.arr
  *         low2 = suffix_loc.arr_low             # <<<<<<<<<<<<<<
@@ -44019,7 +44084,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
  */
   __pyx_v_low2 = __pyx_v_suffix_loc->arr_low;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":818
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":819
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  *         low2 = suffix_loc.arr_low
  *         high2 = suffix_loc.arr_high             # <<<<<<<<<<<<<<
@@ -44028,7 +44093,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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   __pyx_v_high2 = __pyx_v_suffix_loc->arr_high;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":819
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":820
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  *         high2 = suffix_loc.arr_high
  *         step2 = suffix_loc.num_subpatterns             # <<<<<<<<<<<<<<
@@ -44037,26 +44102,26 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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   __pyx_v_step2 = __pyx_v_suffix_loc->num_subpatterns;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":821
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":822
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+  __pyx_t_3 = __Pyx_PyInt_AsInt(__pyx_t_5); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 822; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":823
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":824
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@@ -44066,7 +44131,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":826
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":827
  *             result_ptr = self.merge_helper(low1, high1, arr1.arr, step1,
  *                                     low2, high2, arr2.arr, step2,
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@@ -44078,7 +44143,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   }
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":830
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":831
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  *                                     low2, high2, arr2.arr, step2,
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@@ -44089,7 +44154,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":832
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":833
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  *         if result_len == 0:             # <<<<<<<<<<<<<<
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":833
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":834
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  *         if result_len == 0:
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@@ -44108,7 +44173,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
  */
     free(__pyx_v_result_ptr);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":834
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":835
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@@ -44123,19 +44188,19 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
   }
   /*else*/ {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":836
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":837
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+    __pyx_t_5 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 837; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":837
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":838
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@@ -44144,7 +44209,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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     free(__pyx_v_result->arr);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":838
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":839
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  *             result.arr = result_ptr             # <<<<<<<<<<<<<<
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     __pyx_v_result->arr = __pyx_v_result_ptr;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":839
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":840
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  *             result.len = result_len             # <<<<<<<<<<<<<<
@@ -44162,7 +44227,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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     __pyx_v_result->len = __pyx_v_result_len;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":840
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":841
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  *             result.len = result_len
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@@ -44171,7 +44236,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_intersect_helper(struct
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     __pyx_v_result->size = __pyx_v_result_len;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":841
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":842
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  *             result.size = result_len
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+    if (PyDict_SetItem(__pyx_t_5, ((PyObject *)__pyx_n_s__arr_high), __pyx_t_4) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+    if (PyDict_SetItem(__pyx_t_5, ((PyObject *)__pyx_n_s__num_subpatterns), __pyx_t_4) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+    __pyx_t_4 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_PhraseLocation)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_5)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 842; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":843
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":844
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":845
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":846
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":846
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":847
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":847
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":848
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":848
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":849
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":849
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":850
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":850
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":851
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+      __pyx_t_2 = __Pyx_GetItemInt(((PyObject *)__pyx_v_loc->arr), __pyx_v_j, sizeof(int), PyInt_FromLong); if (!__pyx_t_2) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 851; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_4 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_t_2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 851; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_2 = PyNumber_Add(__pyx_v_result, ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 851; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":851
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":852
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+    __pyx_t_2 = PyNumber_Add(__pyx_v_result, ((PyObject *)__pyx_kp_s_59)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 852; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":852
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":853
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   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":853
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":854
  *             result = result + ")"
  *             i = i + loc.num_subpatterns
  *         result = result + "}"             # <<<<<<<<<<<<<<
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-  __pyx_t_2 = PyNumber_Add(__pyx_v_result, ((PyObject *)__pyx_kp_s_118)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 853; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyNumber_Add(__pyx_v_result, ((PyObject *)__pyx_kp_s_118)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 854; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __pyx_v_result = __pyx_t_2;
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":854
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":855
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  *         result = result + "}"
  *         return result             # <<<<<<<<<<<<<<
@@ -44375,7 +44440,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_loc2str(CYTHON_UNUSED st
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":856
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":857
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":860
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":861
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  *         prefix = prefix_node.phrase             # <<<<<<<<<<<<<<
  *         suffix = suffix_node.phrase
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-  __pyx_t_1 = PyObject_GetAttr(__pyx_v_prefix_node, __pyx_n_s__phrase); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_GetAttr(__pyx_v_prefix_node, __pyx_n_s__phrase); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 861; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_3_sa_Phrase))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_3_sa_Phrase))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 861; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":861
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":862
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  *         prefix = prefix_node.phrase
  *         suffix = suffix_node.phrase             # <<<<<<<<<<<<<<
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  *         suffix_loc = suffix_node.phrase_location
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-  __pyx_t_1 = PyObject_GetAttr(__pyx_v_suffix_node, __pyx_n_s__phrase); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 861; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_GetAttr(__pyx_v_suffix_node, __pyx_n_s__phrase); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_3_sa_Phrase))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":862
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":863
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  *         suffix = suffix_node.phrase
  *         prefix_loc = prefix_node.phrase_location             # <<<<<<<<<<<<<<
  *         suffix_loc = suffix_node.phrase_location
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-  __pyx_t_1 = PyObject_GetAttr(__pyx_v_prefix_node, __pyx_n_s__phrase_location); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_GetAttr(__pyx_v_prefix_node, __pyx_n_s__phrase_location); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 863; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_3_sa_PhraseLocation))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 863; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":863
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":864
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  *         suffix_loc = suffix_node.phrase_location             # <<<<<<<<<<<<<<
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-  __pyx_t_1 = PyObject_GetAttr(__pyx_v_suffix_node, __pyx_n_s__phrase_location); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 863; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_GetAttr(__pyx_v_suffix_node, __pyx_n_s__phrase_location); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 864; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_3_sa_PhraseLocation))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 864; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":865
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":866
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+  __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s_119); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 866; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 866; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __pyx_t_3 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 865; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_3 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 866; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_ptype_3_sa_PhraseLocation))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 866; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":866
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":867
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   if (__pyx_t_4) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":867
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":869
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":870
  *             intersect_method = "precomputed"
  * 
  *         if result is None:             # <<<<<<<<<<<<<<
@@ -44508,7 +44573,7 @@ static struct __pyx_obj_3_sa_PhraseLocation *__pyx_f_3_sa_23HieroCachingRuleFact
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   if (__pyx_t_4) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":870
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":871
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  *         if result is None:
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@@ -44517,21 +44582,21 @@ static struct __pyx_obj_3_sa_PhraseLocation *__pyx_f_3_sa_23HieroCachingRuleFact
  */
     if (__pyx_v_self->use_baeza_yates) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":871
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":872
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+      __pyx_t_3 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->intersect_helper(__pyx_v_self, __pyx_v_prefix, __pyx_v_suffix, __pyx_v_prefix_loc, __pyx_v_suffix_loc, __pyx_v_3_sa_BAEZA_YATES); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 872; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_ptype_3_sa_PhraseLocation))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 872; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":872
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":873
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@@ -44545,21 +44610,21 @@ static struct __pyx_obj_3_sa_PhraseLocation *__pyx_f_3_sa_23HieroCachingRuleFact
     }
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":874
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":875
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+      if (!(likely(((__pyx_t_3) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_3, __pyx_ptype_3_sa_PhraseLocation))))) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 875; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":875
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":876
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":876
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   PyObject *__pyx_v_fwords = 0;
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+          __Pyx_RaiseArgtupleInvalid("advance", 1, 3, 3, 1); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 879; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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-        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__fwords)) != 0)) kw_args--;
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+          __Pyx_RaiseArgtupleInvalid("advance", 1, 3, 3, 2); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 879; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+  __Pyx_RaiseArgtupleInvalid("advance", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 879; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":878
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":880
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+  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 881; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":881
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":882
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-      #endif
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-          else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 881; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      {__pyx_filename = __pyx_f[8]; __pyx_lineno = 881; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      #if CYTHON_COMPILING_IN_CPYTHON
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":884
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+    __pyx_t_13 = PyObject_Length(__pyx_v_fwords); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 887; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":887
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":888
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":889
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":890
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":890
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+    __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 891; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":892
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+          __Pyx_RaiseArgtupleInvalid("get_all_nodes_isteps_away", 1, 7, 7, 1); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 895; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+          __Pyx_RaiseArgtupleInvalid("get_all_nodes_isteps_away", 1, 7, 7, 2); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 895; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+          __Pyx_RaiseArgtupleInvalid("get_all_nodes_isteps_away", 1, 7, 7, 6); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 895; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+  __Pyx_RaiseArgtupleInvalid("get_all_nodes_isteps_away", 1, 7, 7, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 895; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":894
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":896
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":897
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":898
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":899
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":900
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+  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 901; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":901
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":902
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-  __pyx_t_5 = (__Pyx_PySequence_Contains(((PyObject *)__pyx_v_key), __pyx_v_reachable_buffer, Py_EQ)); if (unlikely(__pyx_t_5 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 901; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_5 = ((PySequence_Contains(__pyx_v_reachable_buffer, ((PyObject *)__pyx_v_key)))); if (unlikely(__pyx_t_5 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 902; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":902
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":903
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-    __pyx_t_1 = PyObject_GetItem(__pyx_v_reachable_buffer, ((PyObject *)__pyx_v_key)); if (!__pyx_t_1) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 902; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_1 = PyObject_GetItem(__pyx_v_reachable_buffer, ((PyObject *)__pyx_v_key)); if (!__pyx_t_1) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 903; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":904
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":905
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-    __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__reachable); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 904; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__reachable); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 905; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 904; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 905; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -45388,7 +45444,7 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_14get_all_nodes_isteps_
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+    __pyx_t_2 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_4), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 905; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -45396,18 +45452,18 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_14get_all_nodes_isteps_
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":905
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":906
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-    if (PyObject_SetItem(__pyx_v_reachable_buffer, ((PyObject *)__pyx_v_key), __pyx_v_reachable) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 905; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    if (PyObject_SetItem(__pyx_v_reachable_buffer, ((PyObject *)__pyx_v_key), __pyx_v_reachable) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 906; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":906
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":907
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-    __pyx_t_3 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_reachable); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 906; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_3 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_v_reachable); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 907; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_4); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 906; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      #endif
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-      #endif
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-          else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 906; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 907; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -45452,20 +45500,20 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_14get_all_nodes_isteps_
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     __pyx_t_4 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":907
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":908
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+    __pyx_t_4 = PyObject_GetItem(__pyx_v_next_states, __pyx_v_nextreachable); if (!__pyx_t_4) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 908; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_7 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 908; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -45473,24 +45521,16 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_14get_all_nodes_isteps_
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       if (!__pyx_t_8 && PyList_CheckExact(__pyx_t_1)) {
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-        #endif
+        __pyx_t_4 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_7); __Pyx_INCREF(__pyx_t_4); __pyx_t_7++;
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-        #if CYTHON_COMPILING_IN_CPYTHON
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-        #endif
+        __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_7); __Pyx_INCREF(__pyx_t_4); __pyx_t_7++;
       } else {
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-            else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 907; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 908; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":908
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":909
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+      __pyx_t_4 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__shortest); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 909; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_9 = PyTuple_New(3); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 909; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -45520,7 +45560,7 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_14get_all_nodes_isteps_
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+      __pyx_t_10 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_t_9), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 909; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -45528,19 +45568,20 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_14get_all_nodes_isteps_
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":909
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-      __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_10); if (unlikely(__pyx_t_5 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 909; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_10 = PyObject_RichCompare(__pyx_v_jump, __pyx_v_skip, Py_LT); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 910; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_10);
+      __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_t_10); if (unlikely(__pyx_t_5 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 910; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":910
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":911
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  *                 if jump < skip:
  *                     continue             # <<<<<<<<<<<<<<
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":911
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-      __pyx_t_10 = PyNumber_Add(__pyx_v_pathlen, __pyx_v_jump); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 911; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_10 = PyNumber_Add(__pyx_v_pathlen, __pyx_v_jump); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 912; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_9 = PyInt_FromLong(__pyx_v_self->max_initial_size); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 912; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":913
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":927
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":928
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+        __pyx_t_4 = (__Pyx_NegateNonNeg(PySequence_Contains(((PyObject *)__pyx_v_ret), __pyx_v_ifrom))); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 929; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":929
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@@ -46074,29 +46107,29 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_16reachable(struct __py
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":931
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+        __pyx_t_8 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s__reachable); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 932; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        __pyx_t_3 = PyObject_Call(__pyx_t_8, ((PyObject *)__pyx_t_6), NULL); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 931; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-          __pyx_t_10 = -1; __pyx_t_6 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 931; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-            #else
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-            #endif
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-            #if CYTHON_COMPILING_IN_CPYTHON
-            __pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_6, __pyx_t_10); __Pyx_INCREF(__pyx_t_3); __pyx_t_10++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 931; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-            #else
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-            #endif
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-                else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 931; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 932; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":932
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+          __pyx_t_4 = (__Pyx_NegateNonNeg(PySequence_Contains(((PyObject *)__pyx_v_ret), __pyx_v_ifromchild))); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 933; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":933
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+            __pyx_t_9 = PyList_Append(__pyx_v_ret, __pyx_v_ifromchild); if (unlikely(__pyx_t_9 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 934; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -46180,7 +46205,7 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_16reachable(struct __py
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":935
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   PyObject *__pyx_v_ifrom = 0;
   PyObject *__pyx_v_ito = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__fwords,&__pyx_n_s__ifrom,&__pyx_n_s__ito,0};
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@@ -46236,21 +46261,24 @@ static PyObject *__pyx_pw_3_sa_23HieroCachingRuleFactory_19shortest(PyObject *__
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-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__fwords)) != 0)) kw_args--;
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+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__ifrom);
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-          __Pyx_RaiseArgtupleInvalid("shortest", 1, 3, 3, 2); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 937; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+          __Pyx_RaiseArgtupleInvalid("shortest", 1, 3, 3, 2); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 938; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+  __Pyx_RaiseArgtupleInvalid("shortest", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 938; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":940
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":944
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":945
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":946
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":947
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":964
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":965
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":966
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":967
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":969
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1050
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@@ -48412,54 +48453,54 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1052
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-              __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1056
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1058
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-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1059
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1061
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1062
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1064
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1064
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1066
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1065
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1067
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1066
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  *                         if arity > 0:
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-            __pyx_cur_scope->__pyx_v_sa_range = __pyx_t_11;
-            __pyx_t_11 = 0;
+            __Pyx_GIVEREF(__pyx_t_12);
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1080
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1085
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  *                             else:
  */
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-            if (__pyx_t_8) {
+            __pyx_t_9 = (__pyx_cur_scope->__pyx_v_sa_range != Py_None);
+            if (__pyx_t_9) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1081
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1086
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-              __Pyx_GIVEREF(__pyx_t_9);
-              __pyx_cur_scope->__pyx_v_phrase_location = ((struct __pyx_obj_3_sa_PhraseLocation *)__pyx_t_9);
-              __pyx_t_9 = 0;
+              __Pyx_GIVEREF(__pyx_t_10);
+              __pyx_cur_scope->__pyx_v_phrase_location = ((struct __pyx_obj_3_sa_PhraseLocation *)__pyx_t_10);
+              __pyx_t_10 = 0;
               goto __pyx_L35;
             }
             /*else*/ {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1083
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1088
  *                                 phrase_location = PhraseLocation(sa_low=sa_range[0], sa_high=sa_range[1])
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@@ -48752,29 +48848,29 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1085
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1090
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-          __pyx_t_8 = (((PyObject *)__pyx_cur_scope->__pyx_v_phrase_location) == Py_None);
-          if (__pyx_t_8) {
+          __pyx_t_9 = (((PyObject *)__pyx_cur_scope->__pyx_v_phrase_location) == Py_None);
+          if (__pyx_t_9) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1086
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1091
  * 
  *                         if phrase_location is None:
  *                             node.children[word_id] = None             # <<<<<<<<<<<<<<
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-            __pyx_t_9 = PyObject_GetAttr(__pyx_cur_scope->__pyx_v_node, __pyx_n_s__children); if (unlikely(!__pyx_t_9)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1086; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-            __Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
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+            if (PyObject_SetItem(__pyx_t_10, __pyx_cur_scope->__pyx_v_word_id, Py_None) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1091; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1088
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1093
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1090
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1095
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1091
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1096
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1092
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-            __Pyx_DECREF(__pyx_t_11); __pyx_t_11 = 0;
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1093
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1098
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1094
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1099
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-          if (PyDict_SetItem(__pyx_t_9, ((PyObject *)__pyx_n_s__suffix_link), __pyx_cur_scope->__pyx_v_suffix_link) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1093; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          if (PyDict_SetItem(__pyx_t_10, ((PyObject *)__pyx_n_s__suffix_link), __pyx_cur_scope->__pyx_v_suffix_link) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1098; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1095
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1100
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-          __Pyx_GOTREF(__pyx_t_11);
-          __Pyx_DECREF(((PyObject *)__pyx_t_9)); __pyx_t_9 = 0;
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+          __pyx_t_12 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_ExtendedTrieNode)), ((PyObject *)__pyx_empty_tuple), ((PyObject *)__pyx_t_10)); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1098; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __Pyx_GOTREF(__pyx_t_12);
+          __Pyx_DECREF(((PyObject *)__pyx_t_10)); __pyx_t_10 = 0;
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-          __pyx_cur_scope->__pyx_v_new_node = __pyx_t_11;
-          __pyx_t_11 = 0;
+          __Pyx_GIVEREF(__pyx_t_12);
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         __pyx_L33:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1096
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1101
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+        __Pyx_GOTREF(__pyx_t_12);
+        if (PyObject_SetItem(__pyx_t_12, __pyx_cur_scope->__pyx_v_word_id, __pyx_cur_scope->__pyx_v_new_node) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1101; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1097
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1102
  *                                 phrase=hiero_phrase)
  *                     node.children[word_id] = new_node
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@@ -48900,42 +48996,42 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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         __pyx_cur_scope->__pyx_v_node = __pyx_cur_scope->__pyx_v_new_node;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1102
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1107
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-        __pyx_t_8 = (__pyx_cur_scope->__pyx_v_arity < __pyx_cur_scope->__pyx_v_self->max_nonterminals);
-        if (__pyx_t_8) {
+        __pyx_t_9 = (__pyx_cur_scope->__pyx_v_arity < __pyx_cur_scope->__pyx_v_self->max_nonterminals);
+        if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1103
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1108
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  *                     if arity < self.max_nonterminals:
  *                         xcat_index = arity+1             # <<<<<<<<<<<<<<
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-          __pyx_t_11 = PyInt_FromLong((__pyx_cur_scope->__pyx_v_arity + 1)); if (unlikely(!__pyx_t_11)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1103; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          __Pyx_GOTREF(__pyx_t_11);
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-          __pyx_cur_scope->__pyx_v_xcat_index = __pyx_t_11;
-          __pyx_t_11 = 0;
+          __Pyx_GIVEREF(__pyx_t_12);
+          __pyx_cur_scope->__pyx_v_xcat_index = __pyx_t_12;
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1104
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1109
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-          __pyx_cur_scope->__pyx_v_xcat = __pyx_f_3_sa_sym_setindex(__pyx_cur_scope->__pyx_v_self->category, __pyx_t_19);
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+          __pyx_cur_scope->__pyx_v_xcat = __pyx_f_3_sa_sym_setindex(__pyx_cur_scope->__pyx_v_self->category, __pyx_t_20);
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1105
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1110
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1106
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-          if (__pyx_t_8) {
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1107
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1108
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  *                             suffix_link_xcat_index = xcat_index-1
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+          __pyx_t_20 = __Pyx_PyInt_AsInt(__pyx_cur_scope->__pyx_v_suffix_link_xcat_index); if (unlikely((__pyx_t_20 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1113; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1109
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1110
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1114
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1115
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-          __pyx_t_11 = 0;
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1116
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1117
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1118
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1119
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1120
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-          __Pyx_GOTREF(__pyx_t_3);
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-          __Pyx_GIVEREF(((PyObject *)__pyx_t_3));
-          __pyx_cur_scope->__pyx_v_extracts = __pyx_t_3;
-          __pyx_t_3 = 0;
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1121
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1122
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  *                         extract_start = monitor_cpu()             # <<<<<<<<<<<<<<
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-          __Pyx_GOTREF(__pyx_t_3);
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-          __pyx_cur_scope->__pyx_v_extract_start = __pyx_t_3;
-          __pyx_t_3 = 0;
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1123
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1124
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-            __pyx_cur_scope->__pyx_v_extract = ((PyObject *)__pyx_t_3);
-            __pyx_t_3 = 0;
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1126
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@@ -49231,119 +49330,111 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
  */
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1127
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1132
  * 
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  *                             loc = tuple(sample[j:j+num_subpatterns])             # <<<<<<<<<<<<<<
  *                             extract = self.extract(hiero_phrase, &matching, chunklen.arr, num_subpatterns)
  *                             extracts.extend([(e, loc) for e in extract])
  */
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+            PyTuple_SET_ITEM(__pyx_t_17, 0, __pyx_t_12);
+            __Pyx_GIVEREF(__pyx_t_12);
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+            __pyx_t_12 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_17), NULL); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-            __Pyx_GIVEREF(__pyx_t_3);
-            __pyx_cur_scope->__pyx_v_loc = __pyx_t_3;
-            __pyx_t_3 = 0;
+            __Pyx_GIVEREF(__pyx_t_12);
+            __pyx_cur_scope->__pyx_v_loc = __pyx_t_12;
+            __pyx_t_12 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1128
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1133
  *                             assign_matching(&matching, sample.arr, j, num_subpatterns, self.fda.sent_id.arr)
  *                             loc = tuple(sample[j:j+num_subpatterns])
  *                             extract = self.extract(hiero_phrase, &matching, chunklen.arr, num_subpatterns)             # <<<<<<<<<<<<<<
  *                             extracts.extend([(e, loc) for e in extract])
  *                             j = j + num_subpatterns
  */
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-            __Pyx_GOTREF(__pyx_t_3);
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+            __Pyx_GIVEREF(__pyx_t_12);
+            __pyx_cur_scope->__pyx_v_extract = __pyx_t_12;
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1129
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1134
  *                             loc = tuple(sample[j:j+num_subpatterns])
  *                             extract = self.extract(hiero_phrase, &matching, chunklen.arr, num_subpatterns)
  *                             extracts.extend([(e, loc) for e in extract])             # <<<<<<<<<<<<<<
  *                             j = j + num_subpatterns
  * 
  */
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-              __Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
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-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1130
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1135
  *                             extract = self.extract(hiero_phrase, &matching, chunklen.arr, num_subpatterns)
  *                             extracts.extend([(e, loc) for e in extract])
  *                             j = j + num_subpatterns             # <<<<<<<<<<<<<<
@@ -49353,7 +49444,7 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
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           }
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1132
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1137
  *                             j = j + num_subpatterns
  * 
  *                         num_samples = sample.len/num_subpatterns             # <<<<<<<<<<<<<<
@@ -49362,255 +49453,238 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator4(__pyx_Gene
  */
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-            {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1133
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1138
  * 
  *                         num_samples = sample.len/num_subpatterns
  *                         extract_stop = monitor_cpu()             # <<<<<<<<<<<<<<
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-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1134
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1139
  *                         num_samples = sample.len/num_subpatterns
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  *                         self.extract_time = self.extract_time + extract_stop - extract_start             # <<<<<<<<<<<<<<
  *                         if len(extracts) > 0:
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  */
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   (__pyx_v_e_low[0]) = __pyx_v_e_in_low;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1224
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1230
  * 
  *         e_low[0] = e_in_low
  *         e_high[0] = e_in_high             # <<<<<<<<<<<<<<
@@ -51284,19 +51455,19 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
   (__pyx_v_e_high[0]) = __pyx_v_e_in_high;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1225
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1231
  *         e_low[0] = e_in_low
  *         e_high[0] = e_in_high
  *         self.find_projection(f_low, f_high, f_links_low, f_links_high, e_low, e_high)             # <<<<<<<<<<<<<<
  *         if e_low[0] == -1:
  *             # low-priority corner case: if phrase w is unaligned,
  */
-  __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_f_high); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1225; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, __pyx_v_f_low, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_low, __pyx_v_e_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1225; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_f_high); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1231; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, __pyx_v_f_low, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_low, __pyx_v_e_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1231; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1226
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1232
  *         e_high[0] = e_in_high
  *         self.find_projection(f_low, f_high, f_links_low, f_links_high, e_low, e_high)
  *         if e_low[0] == -1:             # <<<<<<<<<<<<<<
@@ -51306,7 +51477,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   __pyx_t_3 = ((__pyx_v_e_low[0]) == -1);
   if (__pyx_t_3) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1232
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1238
  *             # rule X -> X_1 w X_2 / X_1 X_2.    This is probably
  *             # not worth the bother, though.
  *             return 0             # <<<<<<<<<<<<<<
@@ -51318,7 +51489,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     goto __pyx_L3;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1233
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1239
  *             # not worth the bother, though.
  *             return 0
  *         elif e_in_low != -1 and e_low[0] != e_in_low:             # <<<<<<<<<<<<<<
@@ -51334,7 +51505,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   }
   if (__pyx_t_5) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1234
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1240
  *             return 0
  *         elif e_in_low != -1 and e_low[0] != e_in_low:
  *             if e_in_low - e_low[0] < min_ex_size:             # <<<<<<<<<<<<<<
@@ -51344,7 +51515,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_5 = ((__pyx_v_e_in_low - (__pyx_v_e_low[0])) < __pyx_v_min_ex_size);
     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1235
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1241
  *         elif e_in_low != -1 and e_low[0] != e_in_low:
  *             if e_in_low - e_low[0] < min_ex_size:
  *                 e_low[0] = e_in_low - min_ex_size             # <<<<<<<<<<<<<<
@@ -51353,7 +51524,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
       (__pyx_v_e_low[0]) = (__pyx_v_e_in_low - __pyx_v_min_ex_size);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1236
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1242
  *             if e_in_low - e_low[0] < min_ex_size:
  *                 e_low[0] = e_in_low - min_ex_size
  *                 if e_low[0] < 0:             # <<<<<<<<<<<<<<
@@ -51363,7 +51534,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
       __pyx_t_5 = ((__pyx_v_e_low[0]) < 0);
       if (__pyx_t_5) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1237
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1243
  *                 e_low[0] = e_in_low - min_ex_size
  *                 if e_low[0] < 0:
  *                     return 0             # <<<<<<<<<<<<<<
@@ -51382,7 +51553,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1239
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1245
  *                     return 0
  * 
  *         if e_high[0] - e_low[0] > max_e_len:             # <<<<<<<<<<<<<<
@@ -51392,7 +51563,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   __pyx_t_5 = (((__pyx_v_e_high[0]) - (__pyx_v_e_low[0])) > __pyx_v_max_e_len);
   if (__pyx_t_5) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1240
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1246
  * 
  *         if e_high[0] - e_low[0] > max_e_len:
  *             return 0             # <<<<<<<<<<<<<<
@@ -51404,7 +51575,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     goto __pyx_L6;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1241
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1247
  *         if e_high[0] - e_low[0] > max_e_len:
  *             return 0
  *         elif e_in_high != -1 and e_high[0] != e_in_high:             # <<<<<<<<<<<<<<
@@ -51420,7 +51591,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   }
   if (__pyx_t_4) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1242
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1248
  *             return 0
  *         elif e_in_high != -1 and e_high[0] != e_in_high:
  *             if e_high[0] - e_in_high < min_ex_size:             # <<<<<<<<<<<<<<
@@ -51430,7 +51601,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_4 = (((__pyx_v_e_high[0]) - __pyx_v_e_in_high) < __pyx_v_min_ex_size);
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1243
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1249
  *         elif e_in_high != -1 and e_high[0] != e_in_high:
  *             if e_high[0] - e_in_high < min_ex_size:
  *                 e_high[0] = e_in_high + min_ex_size             # <<<<<<<<<<<<<<
@@ -51439,7 +51610,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
       (__pyx_v_e_high[0]) = (__pyx_v_e_in_high + __pyx_v_min_ex_size);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1244
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1250
  *             if e_high[0] - e_in_high < min_ex_size:
  *                 e_high[0] = e_in_high + min_ex_size
  *                 if e_high[0] > e_sent_len:             # <<<<<<<<<<<<<<
@@ -51449,7 +51620,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
       __pyx_t_4 = ((__pyx_v_e_high[0]) > __pyx_v_e_sent_len);
       if (__pyx_t_4) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1245
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1251
  *                 e_high[0] = e_in_high + min_ex_size
  *                 if e_high[0] > e_sent_len:
  *                     return 0             # <<<<<<<<<<<<<<
@@ -51468,7 +51639,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   }
   __pyx_L6:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1247
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1253
  *                     return 0
  * 
  *         f_back_low[0] = -1             # <<<<<<<<<<<<<<
@@ -51477,7 +51648,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
   (__pyx_v_f_back_low[0]) = -1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1248
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1254
  * 
  *         f_back_low[0] = -1
  *         f_back_high[0] = -1             # <<<<<<<<<<<<<<
@@ -51486,7 +51657,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
   (__pyx_v_f_back_high[0]) = -1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1249
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1255
  *         f_back_low[0] = -1
  *         f_back_high[0] = -1
  *         f_low_prev = f_low             # <<<<<<<<<<<<<<
@@ -51495,17 +51666,17 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
   __pyx_v_f_low_prev = __pyx_v_f_low;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1250
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1256
  *         f_back_high[0] = -1
  *         f_low_prev = f_low
  *         f_high_prev = f_high             # <<<<<<<<<<<<<<
  *         new_x = 0
  *         new_low_x = 0
  */
-  __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_f_high); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1250; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_f_high); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1256; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_v_f_high_prev = __pyx_t_1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1251
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1257
  *         f_low_prev = f_low
  *         f_high_prev = f_high
  *         new_x = 0             # <<<<<<<<<<<<<<
@@ -51514,7 +51685,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
   __pyx_v_new_x = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1252
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1258
  *         f_high_prev = f_high
  *         new_x = 0
  *         new_low_x = 0             # <<<<<<<<<<<<<<
@@ -51523,7 +51694,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
   __pyx_v_new_low_x = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1253
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1259
  *         new_x = 0
  *         new_low_x = 0
  *         new_high_x = 0             # <<<<<<<<<<<<<<
@@ -51532,7 +51703,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
   __pyx_v_new_high_x = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1255
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1261
  *         new_high_x = 0
  * 
  *         while True:             # <<<<<<<<<<<<<<
@@ -51542,7 +51713,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   while (1) {
     if (!1) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1257
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1263
  *         while True:
  * 
  *             if f_back_low[0] == -1:             # <<<<<<<<<<<<<<
@@ -51552,45 +51723,45 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_4 = ((__pyx_v_f_back_low[0]) == -1);
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1258
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1264
  * 
  *             if f_back_low[0] == -1:
  *                 self.find_projection(e_low[0], e_high[0], e_links_low, e_links_high, f_back_low, f_back_high)             # <<<<<<<<<<<<<<
  *             else:
  *                 self.find_projection(e_low[0], e_low_prev, e_links_low, e_links_high, f_back_low, f_back_high)
  */
-      __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, (__pyx_v_e_low[0]), (__pyx_v_e_high[0]), __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_f_back_low, __pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1258; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, (__pyx_v_e_low[0]), (__pyx_v_e_high[0]), __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_f_back_low, __pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1264; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
       goto __pyx_L11;
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1260
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1266
  *                 self.find_projection(e_low[0], e_high[0], e_links_low, e_links_high, f_back_low, f_back_high)
  *             else:
  *                 self.find_projection(e_low[0], e_low_prev, e_links_low, e_links_high, f_back_low, f_back_high)             # <<<<<<<<<<<<<<
  *                 self.find_projection(e_high_prev, e_high[0], e_links_low, e_links_high, f_back_low, f_back_high)
  * 
  */
-      __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, (__pyx_v_e_low[0]), __pyx_v_e_low_prev, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_f_back_low, __pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1260; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, (__pyx_v_e_low[0]), __pyx_v_e_low_prev, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_f_back_low, __pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1261
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1267
  *             else:
  *                 self.find_projection(e_low[0], e_low_prev, e_links_low, e_links_high, f_back_low, f_back_high)
  *                 self.find_projection(e_high_prev, e_high[0], e_links_low, e_links_high, f_back_low, f_back_high)             # <<<<<<<<<<<<<<
  * 
  *             if f_back_low[0] > f_low:
  */
-      __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, __pyx_v_e_high_prev, (__pyx_v_e_high[0]), __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_f_back_low, __pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1261; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, __pyx_v_e_high_prev, (__pyx_v_e_high[0]), __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_f_back_low, __pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1267; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
     }
     __pyx_L11:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1263
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1269
  *                 self.find_projection(e_high_prev, e_high[0], e_links_low, e_links_high, f_back_low, f_back_high)
  * 
  *             if f_back_low[0] > f_low:             # <<<<<<<<<<<<<<
@@ -51600,7 +51771,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_4 = ((__pyx_v_f_back_low[0]) > __pyx_v_f_low);
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1264
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1270
  * 
  *             if f_back_low[0] > f_low:
  *                 f_back_low[0] = f_low             # <<<<<<<<<<<<<<
@@ -51612,35 +51783,36 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L12:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1266
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1272
  *                 f_back_low[0] = f_low
  * 
  *             if f_back_high[0] < f_high:             # <<<<<<<<<<<<<<
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-    __pyx_t_2 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1272; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    __pyx_t_6 = PyObject_RichCompare(__pyx_t_2, __pyx_v_f_high, Py_LT); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_6 = PyObject_RichCompare(__pyx_t_2, __pyx_v_f_high, Py_LT); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1272; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_6);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
-    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1266; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1272; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1267
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1273
  * 
  *             if f_back_high[0] < f_high:
  *                 f_back_high[0] = f_high             # <<<<<<<<<<<<<<
  * 
  *             if f_back_low[0] == f_low_prev and f_back_high[0] == f_high_prev:
  */
-      __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_f_high); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1267; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_v_f_high); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1273; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       (__pyx_v_f_back_high[0]) = __pyx_t_1;
       goto __pyx_L13;
     }
     __pyx_L13:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1269
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1275
  *                 f_back_high[0] = f_high
  * 
  *             if f_back_low[0] == f_low_prev and f_back_high[0] == f_high_prev:             # <<<<<<<<<<<<<<
@@ -51656,7 +51828,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1270
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1276
  * 
  *             if f_back_low[0] == f_low_prev and f_back_high[0] == f_high_prev:
  *                 return 1             # <<<<<<<<<<<<<<
@@ -51669,7 +51841,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L14:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1272
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1278
  *                 return 1
  * 
  *             if allow_low_x == 0 and f_back_low[0] < f_low:             # <<<<<<<<<<<<<<
@@ -51685,7 +51857,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1274
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1280
  *             if allow_low_x == 0 and f_back_low[0] < f_low:
  *                 # FAIL: f phrase is not tight
  *                 return 0             # <<<<<<<<<<<<<<
@@ -51698,7 +51870,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L15:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1276
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1282
  *                 return 0
  * 
  *             if f_back_high[0] - f_back_low[0] > max_f_len:             # <<<<<<<<<<<<<<
@@ -51708,7 +51880,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_5 = (((__pyx_v_f_back_high[0]) - (__pyx_v_f_back_low[0])) > __pyx_v_max_f_len);
     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1278
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1284
  *             if f_back_high[0] - f_back_low[0] > max_f_len:
  *                 # FAIL: f back projection is too wide
  *                 return 0             # <<<<<<<<<<<<<<
@@ -51721,7 +51893,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L16:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1280
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1286
  *                 return 0
  * 
  *             if allow_high_x == 0 and f_back_high[0] > f_high:             # <<<<<<<<<<<<<<
@@ -51730,11 +51902,12 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
     __pyx_t_5 = (__pyx_v_allow_high_x == 0);
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-      __pyx_t_6 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1280; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_6 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1286; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_6);
-      __pyx_t_2 = PyObject_RichCompare(__pyx_t_6, __pyx_v_f_high, Py_GT); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1280; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = PyObject_RichCompare(__pyx_t_6, __pyx_v_f_high, Py_GT); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1286; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
-      __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1280; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1286; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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       __pyx_t_4 = __pyx_t_3;
     } else {
@@ -51742,7 +51915,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1282
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1288
  *             if allow_high_x == 0 and f_back_high[0] > f_high:
  *                 # FAIL: extension on high side not allowed
  *                 return 0             # <<<<<<<<<<<<<<
@@ -51755,7 +51928,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L17:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1284
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1290
  *                 return 0
  * 
  *             if f_low != f_back_low[0]:             # <<<<<<<<<<<<<<
@@ -51765,7 +51938,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_4 = (__pyx_v_f_low != (__pyx_v_f_back_low[0]));
     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1285
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1291
  * 
  *             if f_low != f_back_low[0]:
  *                 if new_low_x == 0:             # <<<<<<<<<<<<<<
@@ -51775,7 +51948,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
       __pyx_t_4 = (__pyx_v_new_low_x == 0);
       if (__pyx_t_4) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1286
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1292
  *             if f_low != f_back_low[0]:
  *                 if new_low_x == 0:
  *                     if new_x >= max_new_x:             # <<<<<<<<<<<<<<
@@ -51785,7 +51958,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         __pyx_t_4 = (__pyx_v_new_x >= __pyx_v_max_new_x);
         if (__pyx_t_4) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1288
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1294
  *                     if new_x >= max_new_x:
  *                         # FAIL: extension required on low side violates max # of gaps
  *                         return 0             # <<<<<<<<<<<<<<
@@ -51798,7 +51971,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1290
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1296
  *                         return 0
  *                     else:
  *                         new_x = new_x + 1             # <<<<<<<<<<<<<<
@@ -51807,7 +51980,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
           __pyx_v_new_x = (__pyx_v_new_x + 1);
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1291
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1297
  *                     else:
  *                         new_x = new_x + 1
  *                         new_low_x = 1             # <<<<<<<<<<<<<<
@@ -51821,7 +51994,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
       }
       __pyx_L19:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1292
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1298
  *                         new_x = new_x + 1
  *                         new_low_x = 1
  *                 if f_low - f_back_low[0] < min_fx_size:             # <<<<<<<<<<<<<<
@@ -51831,7 +52004,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
       __pyx_t_4 = ((__pyx_v_f_low - (__pyx_v_f_back_low[0])) < __pyx_v_min_fx_size);
       if (__pyx_t_4) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1293
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1299
  *                         new_low_x = 1
  *                 if f_low - f_back_low[0] < min_fx_size:
  *                     f_back_low[0] = f_low - min_fx_size             # <<<<<<<<<<<<<<
@@ -51840,7 +52013,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
         (__pyx_v_f_back_low[0]) = (__pyx_v_f_low - __pyx_v_min_fx_size);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1294
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1300
  *                 if f_low - f_back_low[0] < min_fx_size:
  *                     f_back_low[0] = f_low - min_fx_size
  *                     if f_back_high[0] - f_back_low[0] > max_f_len:             # <<<<<<<<<<<<<<
@@ -51850,7 +52023,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         __pyx_t_4 = (((__pyx_v_f_back_high[0]) - (__pyx_v_f_back_low[0])) > __pyx_v_max_f_len);
         if (__pyx_t_4) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1296
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1302
  *                     if f_back_high[0] - f_back_low[0] > max_f_len:
  *                         # FAIL: extension required on low side violates max initial length
  *                         return 0             # <<<<<<<<<<<<<<
@@ -51863,7 +52036,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         }
         __pyx_L22:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1297
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1303
  *                         # FAIL: extension required on low side violates max initial length
  *                         return 0
  *                     if f_back_low[0] < 0:             # <<<<<<<<<<<<<<
@@ -51873,7 +52046,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         __pyx_t_4 = ((__pyx_v_f_back_low[0]) < 0);
         if (__pyx_t_4) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1299
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1305
  *                     if f_back_low[0] < 0:
  *                         # FAIL: extension required on low side violates sentence boundary
  *                         return 0             # <<<<<<<<<<<<<<
@@ -51892,22 +52065,23 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L18:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1301
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1307
  *                         return 0
  * 
  *             if f_high != f_back_high[0]:             # <<<<<<<<<<<<<<
  *                 if new_high_x == 0:
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-    __pyx_t_2 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1301; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1307; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    __pyx_t_6 = PyObject_RichCompare(__pyx_v_f_high, __pyx_t_2, Py_NE); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1301; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_6 = PyObject_RichCompare(__pyx_v_f_high, __pyx_t_2, Py_NE); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1307; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_6);
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
-    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1301; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1307; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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     if (__pyx_t_4) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1302
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1308
  * 
  *             if f_high != f_back_high[0]:
  *                 if new_high_x == 0:             # <<<<<<<<<<<<<<
@@ -51917,7 +52091,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
       __pyx_t_4 = (__pyx_v_new_high_x == 0);
       if (__pyx_t_4) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1303
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1309
  *             if f_high != f_back_high[0]:
  *                 if new_high_x == 0:
  *                     if new_x >= max_new_x:             # <<<<<<<<<<<<<<
@@ -51927,7 +52101,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         __pyx_t_4 = (__pyx_v_new_x >= __pyx_v_max_new_x);
         if (__pyx_t_4) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1305
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1311
  *                     if new_x >= max_new_x:
  *                         # FAIL: extension required on high side violates max # of gaps
  *                         return 0             # <<<<<<<<<<<<<<
@@ -51940,7 +52114,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         }
         /*else*/ {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1307
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1313
  *                         return 0
  *                     else:
  *                         new_x = new_x + 1             # <<<<<<<<<<<<<<
@@ -51949,7 +52123,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
           __pyx_v_new_x = (__pyx_v_new_x + 1);
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1308
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1314
  *                     else:
  *                         new_x = new_x + 1
  *                         new_high_x = 1             # <<<<<<<<<<<<<<
@@ -51963,44 +52137,45 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
       }
       __pyx_L25:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1309
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1315
  *                         new_x = new_x + 1
  *                         new_high_x = 1
  *                 if f_back_high[0] - f_high < min_fx_size:             # <<<<<<<<<<<<<<
  *                     f_back_high[0] = f_high + min_fx_size
  *                     if f_back_high[0] - f_back_low[0] > max_f_len:
  */
-      __pyx_t_6 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_6 = PyInt_FromLong((__pyx_v_f_back_high[0])); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1315; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      __pyx_t_2 = PyNumber_Subtract(__pyx_t_6, __pyx_v_f_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = PyNumber_Subtract(__pyx_t_6, __pyx_v_f_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1315; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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       __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
-      __pyx_t_6 = PyInt_FromLong(__pyx_v_min_fx_size); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_6 = PyInt_FromLong(__pyx_v_min_fx_size); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1315; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_6);
-      __pyx_t_7 = PyObject_RichCompare(__pyx_t_2, __pyx_t_6, Py_LT); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_7 = PyObject_RichCompare(__pyx_t_2, __pyx_t_6, Py_LT); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1315; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_7);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
       __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
-      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1309; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1315; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
       if (__pyx_t_4) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1310
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1316
  *                         new_high_x = 1
  *                 if f_back_high[0] - f_high < min_fx_size:
  *                     f_back_high[0] = f_high + min_fx_size             # <<<<<<<<<<<<<<
  *                     if f_back_high[0] - f_back_low[0] > max_f_len:
  *                         # FAIL: extension required on high side violates max initial length
  */
-        __pyx_t_7 = PyInt_FromLong(__pyx_v_min_fx_size); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_7 = PyInt_FromLong(__pyx_v_min_fx_size); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1316; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_7);
-        __pyx_t_6 = PyNumber_Add(__pyx_v_f_high, __pyx_t_7); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_6 = PyNumber_Add(__pyx_v_f_high, __pyx_t_7); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1316; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_6);
         __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
-        __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_t_6); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1310; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_1 = __Pyx_PyInt_AsInt(__pyx_t_6); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1316; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
         (__pyx_v_f_back_high[0]) = __pyx_t_1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1311
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1317
  *                 if f_back_high[0] - f_high < min_fx_size:
  *                     f_back_high[0] = f_high + min_fx_size
  *                     if f_back_high[0] - f_back_low[0] > max_f_len:             # <<<<<<<<<<<<<<
@@ -52010,7 +52185,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         __pyx_t_4 = (((__pyx_v_f_back_high[0]) - (__pyx_v_f_back_low[0])) > __pyx_v_max_f_len);
         if (__pyx_t_4) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1313
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1319
  *                     if f_back_high[0] - f_back_low[0] > max_f_len:
  *                         # FAIL: extension required on high side violates max initial length
  *                         return 0             # <<<<<<<<<<<<<<
@@ -52023,7 +52198,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         }
         __pyx_L28:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1314
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1320
  *                         # FAIL: extension required on high side violates max initial length
  *                         return 0
  *                     if f_back_high[0] > f_sent_len:             # <<<<<<<<<<<<<<
@@ -52033,7 +52208,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
         __pyx_t_4 = ((__pyx_v_f_back_high[0]) > __pyx_v_f_sent_len);
         if (__pyx_t_4) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1316
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1322
  *                     if f_back_high[0] > f_sent_len:
  *                         # FAIL: extension required on high side violates sentence boundary
  *                         return 0             # <<<<<<<<<<<<<<
@@ -52052,7 +52227,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L24:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1318
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1324
  *                         return 0
  * 
  *             e_low_prev = e_low[0]             # <<<<<<<<<<<<<<
@@ -52061,7 +52236,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
     __pyx_v_e_low_prev = (__pyx_v_e_low[0]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1319
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1325
  * 
  *             e_low_prev = e_low[0]
  *             e_high_prev = e_high[0]             # <<<<<<<<<<<<<<
@@ -52070,29 +52245,29 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
     __pyx_v_e_high_prev = (__pyx_v_e_high[0]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1321
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1327
  *             e_high_prev = e_high[0]
  * 
  *             self.find_projection(f_back_low[0], f_low_prev, f_links_low, f_links_high, e_low, e_high)             # <<<<<<<<<<<<<<
  *             self.find_projection(f_high_prev, f_back_high[0], f_links_low, f_links_high, e_low, e_high)
  *             if e_low[0] == e_low_prev and e_high[0] == e_high_prev:
  */
-    __pyx_t_6 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, (__pyx_v_f_back_low[0]), __pyx_v_f_low_prev, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_low, __pyx_v_e_high); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1321; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_6 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, (__pyx_v_f_back_low[0]), __pyx_v_f_low_prev, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_low, __pyx_v_e_high); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1327; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_6);
     __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1322
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1328
  * 
  *             self.find_projection(f_back_low[0], f_low_prev, f_links_low, f_links_high, e_low, e_high)
  *             self.find_projection(f_high_prev, f_back_high[0], f_links_low, f_links_high, e_low, e_high)             # <<<<<<<<<<<<<<
  *             if e_low[0] == e_low_prev and e_high[0] == e_high_prev:
  *                 return 1
  */
-    __pyx_t_6 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, __pyx_v_f_high_prev, (__pyx_v_f_back_high[0]), __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_low, __pyx_v_e_high); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1322; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_6 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_projection(__pyx_v_self, __pyx_v_f_high_prev, (__pyx_v_f_back_high[0]), __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_low, __pyx_v_e_high); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1328; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_6);
     __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1323
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1329
  *             self.find_projection(f_back_low[0], f_low_prev, f_links_low, f_links_high, e_low, e_high)
  *             self.find_projection(f_high_prev, f_back_high[0], f_links_low, f_links_high, e_low, e_high)
  *             if e_low[0] == e_low_prev and e_high[0] == e_high_prev:             # <<<<<<<<<<<<<<
@@ -52108,7 +52283,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1324
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1330
  *             self.find_projection(f_high_prev, f_back_high[0], f_links_low, f_links_high, e_low, e_high)
  *             if e_low[0] == e_low_prev and e_high[0] == e_high_prev:
  *                 return 1             # <<<<<<<<<<<<<<
@@ -52121,7 +52296,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L30:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1325
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1331
  *             if e_low[0] == e_low_prev and e_high[0] == e_high_prev:
  *                 return 1
  *             if allow_arbitrary_x == 0:             # <<<<<<<<<<<<<<
@@ -52131,7 +52306,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_3 = (__pyx_v_allow_arbitrary_x == 0);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1327
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1333
  *             if allow_arbitrary_x == 0:
  *                 # FAIL: arbitrary expansion not permitted
  *                 return 0             # <<<<<<<<<<<<<<
@@ -52144,7 +52319,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L31:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1328
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1334
  *                 # FAIL: arbitrary expansion not permitted
  *                 return 0
  *             if e_high[0] - e_low[0] > max_e_len:             # <<<<<<<<<<<<<<
@@ -52154,7 +52329,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     __pyx_t_3 = (((__pyx_v_e_high[0]) - (__pyx_v_e_low[0])) > __pyx_v_max_e_len);
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1330
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1336
  *             if e_high[0] - e_low[0] > max_e_len:
  *                 # FAIL: re-projection violates sentence max phrase length
  *                 return 0             # <<<<<<<<<<<<<<
@@ -52167,7 +52342,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
     }
     __pyx_L32:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1331
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1337
  *                 # FAIL: re-projection violates sentence max phrase length
  *                 return 0
  *             f_low_prev = f_back_low[0]             # <<<<<<<<<<<<<<
@@ -52176,7 +52351,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
  */
     __pyx_v_f_low_prev = (__pyx_v_f_back_low[0]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1332
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1338
  *                 return 0
  *             f_low_prev = f_back_low[0]
  *             f_high_prev = f_back_high[0]             # <<<<<<<<<<<<<<
@@ -52199,7 +52374,7 @@ static int __pyx_f_3_sa_23HieroCachingRuleFactory_find_fixpoint(struct __pyx_obj
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1335
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1341
  * 
  * 
  *     cdef find_projection(self, int in_low, int in_high, int* in_links_low, int* in_links_high,             # <<<<<<<<<<<<<<
@@ -52217,7 +52392,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_find_projection(CYTHON_U
   int __pyx_t_4;
   __Pyx_RefNannySetupContext("find_projection", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1338
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1344
  *                         int* out_low, int* out_high):
  *         cdef int i
  *         for i from in_low <= i < in_high:             # <<<<<<<<<<<<<<
@@ -52227,7 +52402,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_find_projection(CYTHON_U
   __pyx_t_1 = __pyx_v_in_high;
   for (__pyx_v_i = __pyx_v_in_low; __pyx_v_i < __pyx_t_1; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1339
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1345
  *         cdef int i
  *         for i from in_low <= i < in_high:
  *             if in_links_low[i] != -1:             # <<<<<<<<<<<<<<
@@ -52237,7 +52412,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_find_projection(CYTHON_U
     __pyx_t_2 = ((__pyx_v_in_links_low[__pyx_v_i]) != -1);
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1340
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1346
  *         for i from in_low <= i < in_high:
  *             if in_links_low[i] != -1:
  *                 if out_low[0] == -1 or in_links_low[i] < out_low[0]:             # <<<<<<<<<<<<<<
@@ -52253,7 +52428,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_find_projection(CYTHON_U
       }
       if (__pyx_t_4) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1341
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1347
  *             if in_links_low[i] != -1:
  *                 if out_low[0] == -1 or in_links_low[i] < out_low[0]:
  *                     out_low[0] = in_links_low[i]             # <<<<<<<<<<<<<<
@@ -52265,7 +52440,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_find_projection(CYTHON_U
       }
       __pyx_L6:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1342
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1348
  *                 if out_low[0] == -1 or in_links_low[i] < out_low[0]:
  *                     out_low[0] = in_links_low[i]
  *                 if out_high[0] == -1 or in_links_high[i] > out_high[0]:             # <<<<<<<<<<<<<<
@@ -52281,7 +52456,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_find_projection(CYTHON_U
       }
       if (__pyx_t_3) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1343
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1349
  *                     out_low[0] = in_links_low[i]
  *                 if out_high[0] == -1 or in_links_high[i] > out_high[0]:
  *                     out_high[0] = in_links_high[i]             # <<<<<<<<<<<<<<
@@ -52303,7 +52478,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_find_projection(CYTHON_U
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1346
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1352
  * 
  * 
  *     cdef int* int_arr_extend(self, int* arr, int* arr_len, int* data, int data_len):             # <<<<<<<<<<<<<<
@@ -52317,7 +52492,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_int_arr_extend(CYTHON_UNUSED
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("int_arr_extend", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1348
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1354
  *     cdef int* int_arr_extend(self, int* arr, int* arr_len, int* data, int data_len):
  *         cdef int new_len
  *         new_len = arr_len[0] + data_len             # <<<<<<<<<<<<<<
@@ -52326,7 +52501,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_int_arr_extend(CYTHON_UNUSED
  */
   __pyx_v_new_len = ((__pyx_v_arr_len[0]) + __pyx_v_data_len);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1349
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1355
  *         cdef int new_len
  *         new_len = arr_len[0] + data_len
  *         arr = <int*> realloc(arr, new_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -52335,7 +52510,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_int_arr_extend(CYTHON_UNUSED
  */
   __pyx_v_arr = ((int *)realloc(__pyx_v_arr, (__pyx_v_new_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1350
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1356
  *         new_len = arr_len[0] + data_len
  *         arr = <int*> realloc(arr, new_len*sizeof(int))
  *         memcpy(arr+arr_len[0], data, data_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -52344,7 +52519,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_int_arr_extend(CYTHON_UNUSED
  */
   memcpy((__pyx_v_arr + (__pyx_v_arr_len[0])), __pyx_v_data, (__pyx_v_data_len * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1351
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1357
  *         arr = <int*> realloc(arr, new_len*sizeof(int))
  *         memcpy(arr+arr_len[0], data, data_len*sizeof(int))
  *         arr_len[0] = new_len             # <<<<<<<<<<<<<<
@@ -52353,7 +52528,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_int_arr_extend(CYTHON_UNUSED
  */
   (__pyx_v_arr_len[0]) = __pyx_v_new_len;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1352
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1358
  *         memcpy(arr+arr_len[0], data, data_len*sizeof(int))
  *         arr_len[0] = new_len
  *         return arr             # <<<<<<<<<<<<<<
@@ -52369,7 +52544,7 @@ static int *__pyx_f_3_sa_23HieroCachingRuleFactory_int_arr_extend(CYTHON_UNUSED
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1355
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1361
  * 
  * 
  *     cdef extract_phrases(self, int e_low, int e_high, int* e_gap_low, int* e_gap_high, int* e_links_low, int num_gaps,             # <<<<<<<<<<<<<<
@@ -52415,19 +52590,19 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   int __pyx_clineno = 0;
   __Pyx_RefNannySetupContext("extract_phrases", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1363
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1369
  *         cdef result
  * 
  *         result = []             # <<<<<<<<<<<<<<
  *         len1 = 0
  *         e_gaps1 = <int*> malloc(0)
  */
-  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1363; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1369; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __pyx_v_result = ((PyObject *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1364
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1370
  * 
  *         result = []
  *         len1 = 0             # <<<<<<<<<<<<<<
@@ -52436,7 +52611,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_len1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1365
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1371
  *         result = []
  *         len1 = 0
  *         e_gaps1 = <int*> malloc(0)             # <<<<<<<<<<<<<<
@@ -52445,19 +52620,19 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_e_gaps1 = ((int *)malloc(0));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1366
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1372
  *         len1 = 0
  *         e_gaps1 = <int*> malloc(0)
  *         ephr_arr = IntList()             # <<<<<<<<<<<<<<
  * 
  *         e_gap_order = <int*> malloc(num_gaps*sizeof(int))
  */
-  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1366; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1372; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __pyx_v_ephr_arr = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1368
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1374
  *         ephr_arr = IntList()
  * 
  *         e_gap_order = <int*> malloc(num_gaps*sizeof(int))             # <<<<<<<<<<<<<<
@@ -52466,7 +52641,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_e_gap_order = ((int *)malloc((__pyx_v_num_gaps * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1369
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1375
  * 
  *         e_gap_order = <int*> malloc(num_gaps*sizeof(int))
  *         if num_gaps > 0:             # <<<<<<<<<<<<<<
@@ -52476,7 +52651,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   __pyx_t_2 = (__pyx_v_num_gaps > 0);
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1370
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1376
  *         e_gap_order = <int*> malloc(num_gaps*sizeof(int))
  *         if num_gaps > 0:
  *             e_gap_order[0] = 0             # <<<<<<<<<<<<<<
@@ -52485,7 +52660,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     (__pyx_v_e_gap_order[0]) = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1371
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1377
  *         if num_gaps > 0:
  *             e_gap_order[0] = 0
  *             for i from 1 <= i < num_gaps:             # <<<<<<<<<<<<<<
@@ -52495,7 +52670,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     __pyx_t_3 = __pyx_v_num_gaps;
     for (__pyx_v_i = 1; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1372
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1378
  *             e_gap_order[0] = 0
  *             for i from 1 <= i < num_gaps:
  *                 for j from 0 <= j < i:             # <<<<<<<<<<<<<<
@@ -52505,7 +52680,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_t_4 = __pyx_v_i;
       for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_4; __pyx_v_j++) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1373
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1379
  *             for i from 1 <= i < num_gaps:
  *                 for j from 0 <= j < i:
  *                     if e_gap_low[i] < e_gap_low[j]:             # <<<<<<<<<<<<<<
@@ -52515,7 +52690,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
         __pyx_t_2 = ((__pyx_v_e_gap_low[__pyx_v_i]) < (__pyx_v_e_gap_low[__pyx_v_j]));
         if (__pyx_t_2) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1374
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1380
  *                 for j from 0 <= j < i:
  *                     if e_gap_low[i] < e_gap_low[j]:
  *                         for k from j <= k < i:             # <<<<<<<<<<<<<<
@@ -52525,7 +52700,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
           __pyx_t_5 = __pyx_v_i;
           for (__pyx_v_k = __pyx_v_j; __pyx_v_k < __pyx_t_5; __pyx_v_k++) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1375
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1381
  *                     if e_gap_low[i] < e_gap_low[j]:
  *                         for k from j <= k < i:
  *                             e_gap_order[k+1] = e_gap_order[k]             # <<<<<<<<<<<<<<
@@ -52535,7 +52710,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
             (__pyx_v_e_gap_order[(__pyx_v_k + 1)]) = (__pyx_v_e_gap_order[__pyx_v_k]);
           }
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1376
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1382
  *                         for k from j <= k < i:
  *                             e_gap_order[k+1] = e_gap_order[k]
  *                         e_gap_order[j] = i             # <<<<<<<<<<<<<<
@@ -52544,7 +52719,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
           (__pyx_v_e_gap_order[__pyx_v_j]) = __pyx_v_i;
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1377
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1383
  *                             e_gap_order[k+1] = e_gap_order[k]
  *                         e_gap_order[j] = i
  *                         break             # <<<<<<<<<<<<<<
@@ -52558,7 +52733,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1379
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1385
  *                         break
  *                 else:
  *                     e_gap_order[i] = i             # <<<<<<<<<<<<<<
@@ -52573,7 +52748,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   }
   __pyx_L3:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1381
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1387
  *                     e_gap_order[i] = i
  * 
  *         e_x_low = e_low             # <<<<<<<<<<<<<<
@@ -52582,7 +52757,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_e_x_low = __pyx_v_e_low;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1382
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1388
  * 
  *         e_x_low = e_low
  *         e_x_high = e_high             # <<<<<<<<<<<<<<
@@ -52591,7 +52766,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_e_x_high = __pyx_v_e_high;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1383
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1389
  *         e_x_low = e_low
  *         e_x_high = e_high
  *         if not self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -52601,7 +52776,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   __pyx_t_2 = (!__pyx_v_self->tight_phrases);
   if (__pyx_t_2) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1384
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1390
  *         e_x_high = e_high
  *         if not self.tight_phrases:
  *             while e_x_low > 0 and e_high - e_x_low < self.train_max_initial_size and e_links_low[e_x_low-1] == -1:             # <<<<<<<<<<<<<<
@@ -52624,7 +52799,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       }
       if (!__pyx_t_6) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1385
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1391
  *         if not self.tight_phrases:
  *             while e_x_low > 0 and e_high - e_x_low < self.train_max_initial_size and e_links_low[e_x_low-1] == -1:
  *                 e_x_low = e_x_low - 1             # <<<<<<<<<<<<<<
@@ -52634,7 +52809,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_v_e_x_low = (__pyx_v_e_x_low - 1);
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1386
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1392
  *             while e_x_low > 0 and e_high - e_x_low < self.train_max_initial_size and e_links_low[e_x_low-1] == -1:
  *                 e_x_low = e_x_low - 1
  *             while e_x_high < e_sent_len and e_x_high - e_low < self.train_max_initial_size and e_links_low[e_x_high] == -1:             # <<<<<<<<<<<<<<
@@ -52657,7 +52832,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       }
       if (!__pyx_t_2) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1387
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1393
  *                 e_x_low = e_x_low - 1
  *             while e_x_high < e_sent_len and e_x_high - e_low < self.train_max_initial_size and e_links_low[e_x_high] == -1:
  *                 e_x_high = e_x_high + 1             # <<<<<<<<<<<<<<
@@ -52670,7 +52845,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   }
   __pyx_L11:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1389
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1395
  *                 e_x_high = e_x_high + 1
  * 
  *         for i from e_x_low <= i <= e_low:             # <<<<<<<<<<<<<<
@@ -52680,7 +52855,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   __pyx_t_3 = __pyx_v_e_low;
   for (__pyx_v_i = __pyx_v_e_x_low; __pyx_v_i <= __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1390
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1396
  * 
  *         for i from e_x_low <= i <= e_low:
  *             e_gaps1 = self.int_arr_extend(e_gaps1, &len1, &i, 1)             # <<<<<<<<<<<<<<
@@ -52690,7 +52865,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     __pyx_v_e_gaps1 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->int_arr_extend(__pyx_v_self, __pyx_v_e_gaps1, (&__pyx_v_len1), (&__pyx_v_i), 1);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1392
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1398
  *             e_gaps1 = self.int_arr_extend(e_gaps1, &len1, &i, 1)
  * 
  *         for i from 0 <= i < num_gaps:             # <<<<<<<<<<<<<<
@@ -52700,7 +52875,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   __pyx_t_3 = __pyx_v_num_gaps;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1393
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1399
  * 
  *         for i from 0 <= i < num_gaps:
  *             e_gaps2 = <int*> malloc(0)             # <<<<<<<<<<<<<<
@@ -52709,7 +52884,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_e_gaps2 = ((int *)malloc(0));
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1394
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1400
  *         for i from 0 <= i < num_gaps:
  *             e_gaps2 = <int*> malloc(0)
  *             len2 = 0             # <<<<<<<<<<<<<<
@@ -52718,7 +52893,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_len2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1396
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1402
  *             len2 = 0
  * 
  *             j = e_gap_order[i]             # <<<<<<<<<<<<<<
@@ -52727,7 +52902,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_j = (__pyx_v_e_gap_order[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1397
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1403
  * 
  *             j = e_gap_order[i]
  *             e_x_gap_low = e_gap_low[j]             # <<<<<<<<<<<<<<
@@ -52736,7 +52911,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_e_x_gap_low = (__pyx_v_e_gap_low[__pyx_v_j]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1398
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1404
  *             j = e_gap_order[i]
  *             e_x_gap_low = e_gap_low[j]
  *             e_x_gap_high = e_gap_high[j]             # <<<<<<<<<<<<<<
@@ -52745,7 +52920,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_e_x_gap_high = (__pyx_v_e_gap_high[__pyx_v_j]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1399
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1405
  *             e_x_gap_low = e_gap_low[j]
  *             e_x_gap_high = e_gap_high[j]
  *             if not self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -52755,7 +52930,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     __pyx_t_2 = (!__pyx_v_self->tight_phrases);
     if (__pyx_t_2) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1400
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1406
  *             e_x_gap_high = e_gap_high[j]
  *             if not self.tight_phrases:
  *                 while e_x_gap_low > e_x_low and e_links_low[e_x_gap_low-1] == -1:             # <<<<<<<<<<<<<<
@@ -52772,7 +52947,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
         }
         if (!__pyx_t_7) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1401
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1407
  *             if not self.tight_phrases:
  *                 while e_x_gap_low > e_x_low and e_links_low[e_x_gap_low-1] == -1:
  *                     e_x_gap_low = e_x_gap_low - 1             # <<<<<<<<<<<<<<
@@ -52782,7 +52957,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
         __pyx_v_e_x_gap_low = (__pyx_v_e_x_gap_low - 1);
       }
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1402
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1408
  *                 while e_x_gap_low > e_x_low and e_links_low[e_x_gap_low-1] == -1:
  *                     e_x_gap_low = e_x_gap_low - 1
  *                 while e_x_gap_high < e_x_high and e_links_low[e_x_gap_high] == -1:             # <<<<<<<<<<<<<<
@@ -52799,7 +52974,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
         }
         if (!__pyx_t_6) break;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1403
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1409
  *                     e_x_gap_low = e_x_gap_low - 1
  *                 while e_x_gap_high < e_x_high and e_links_low[e_x_gap_high] == -1:
  *                     e_x_gap_high = e_x_gap_high + 1             # <<<<<<<<<<<<<<
@@ -52812,7 +52987,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     }
     __pyx_L20:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1405
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1411
  *                     e_x_gap_high = e_x_gap_high + 1
  * 
  *             k = 0             # <<<<<<<<<<<<<<
@@ -52821,7 +52996,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_k = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1406
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1412
  * 
  *             k = 0
  *             step = 1+(i*2)             # <<<<<<<<<<<<<<
@@ -52830,7 +53005,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_step = (1 + (__pyx_v_i * 2));
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1407
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1413
  *             k = 0
  *             step = 1+(i*2)
  *             while k < len1:             # <<<<<<<<<<<<<<
@@ -52841,7 +53016,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_t_6 = (__pyx_v_k < __pyx_v_len1);
       if (!__pyx_t_6) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1408
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1414
  *             step = 1+(i*2)
  *             while k < len1:
  *                 for m from e_x_gap_low <= m <= e_gap_low[j]:             # <<<<<<<<<<<<<<
@@ -52851,7 +53026,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_t_4 = (__pyx_v_e_gap_low[__pyx_v_j]);
       for (__pyx_v_m = __pyx_v_e_x_gap_low; __pyx_v_m <= __pyx_t_4; __pyx_v_m++) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1409
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1415
  *             while k < len1:
  *                 for m from e_x_gap_low <= m <= e_gap_low[j]:
  *                     if m >= e_gaps1[k+step-1]:             # <<<<<<<<<<<<<<
@@ -52861,7 +53036,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
         __pyx_t_6 = (__pyx_v_m >= (__pyx_v_e_gaps1[((__pyx_v_k + __pyx_v_step) - 1)]));
         if (__pyx_t_6) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1410
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1416
  *                 for m from e_x_gap_low <= m <= e_gap_low[j]:
  *                     if m >= e_gaps1[k+step-1]:
  *                         for n from e_gap_high[j] <= n <= e_x_gap_high:             # <<<<<<<<<<<<<<
@@ -52871,7 +53046,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
           __pyx_t_5 = __pyx_v_e_x_gap_high;
           for (__pyx_v_n = (__pyx_v_e_gap_high[__pyx_v_j]); __pyx_v_n <= __pyx_t_5; __pyx_v_n++) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1411
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1417
  *                     if m >= e_gaps1[k+step-1]:
  *                         for n from e_gap_high[j] <= n <= e_x_gap_high:
  *                             if n-m >= 1:    # extractor.py doesn't restrict target-side gap length             # <<<<<<<<<<<<<<
@@ -52881,7 +53056,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
             __pyx_t_6 = ((__pyx_v_n - __pyx_v_m) >= 1);
             if (__pyx_t_6) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1412
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1418
  *                         for n from e_gap_high[j] <= n <= e_x_gap_high:
  *                             if n-m >= 1:    # extractor.py doesn't restrict target-side gap length
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+k, step)             # <<<<<<<<<<<<<<
@@ -52890,7 +53065,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
               __pyx_v_e_gaps2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->int_arr_extend(__pyx_v_self, __pyx_v_e_gaps2, (&__pyx_v_len2), (__pyx_v_e_gaps1 + __pyx_v_k), __pyx_v_step);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1413
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1419
  *                             if n-m >= 1:    # extractor.py doesn't restrict target-side gap length
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+k, step)
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &m, 1)             # <<<<<<<<<<<<<<
@@ -52899,7 +53074,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
               __pyx_v_e_gaps2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->int_arr_extend(__pyx_v_self, __pyx_v_e_gaps2, (&__pyx_v_len2), (&__pyx_v_m), 1);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1414
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1420
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+k, step)
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &m, 1)
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &n, 1)             # <<<<<<<<<<<<<<
@@ -52916,7 +53091,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
         __pyx_L29:;
       }
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1415
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1421
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &m, 1)
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &n, 1)
  *                 k = k + step             # <<<<<<<<<<<<<<
@@ -52926,7 +53101,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_v_k = (__pyx_v_k + __pyx_v_step);
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1416
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1422
  *                                 e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &n, 1)
  *                 k = k + step
  *             free(e_gaps1)             # <<<<<<<<<<<<<<
@@ -52935,7 +53110,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     free(__pyx_v_e_gaps1);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1417
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1423
  *                 k = k + step
  *             free(e_gaps1)
  *             e_gaps1 = e_gaps2             # <<<<<<<<<<<<<<
@@ -52944,7 +53119,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_e_gaps1 = __pyx_v_e_gaps2;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1418
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1424
  *             free(e_gaps1)
  *             e_gaps1 = e_gaps2
  *             len1 = len2             # <<<<<<<<<<<<<<
@@ -52954,7 +53129,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     __pyx_v_len1 = __pyx_v_len2;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1420
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1426
  *             len1 = len2
  * 
  *         step = 1+(num_gaps*2)             # <<<<<<<<<<<<<<
@@ -52963,7 +53138,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_step = (1 + (__pyx_v_num_gaps * 2));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1421
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1427
  * 
  *         step = 1+(num_gaps*2)
  *         e_gaps2 = <int*> malloc(0)             # <<<<<<<<<<<<<<
@@ -52972,7 +53147,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_e_gaps2 = ((int *)malloc(0));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1422
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1428
  *         step = 1+(num_gaps*2)
  *         e_gaps2 = <int*> malloc(0)
  *         len2 = 0             # <<<<<<<<<<<<<<
@@ -52981,7 +53156,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_len2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1423
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1429
  *         e_gaps2 = <int*> malloc(0)
  *         len2 = 0
  *         for i from e_high <= i <= e_x_high:             # <<<<<<<<<<<<<<
@@ -52991,7 +53166,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
   __pyx_t_3 = __pyx_v_e_x_high;
   for (__pyx_v_i = __pyx_v_e_high; __pyx_v_i <= __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1424
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1430
  *         len2 = 0
  *         for i from e_high <= i <= e_x_high:
  *             j = 0             # <<<<<<<<<<<<<<
@@ -53000,7 +53175,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_j = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1425
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1431
  *         for i from e_high <= i <= e_x_high:
  *             j = 0
  *             while j < len1:             # <<<<<<<<<<<<<<
@@ -53011,7 +53186,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_t_6 = (__pyx_v_j < __pyx_v_len1);
       if (!__pyx_t_6) break;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1426
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1432
  *             j = 0
  *             while j < len1:
  *                 if i - e_gaps1[j] <= self.train_max_initial_size and i >= e_gaps1[j+step-1]:             # <<<<<<<<<<<<<<
@@ -53027,7 +53202,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       }
       if (__pyx_t_2) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1427
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1433
  *             while j < len1:
  *                 if i - e_gaps1[j] <= self.train_max_initial_size and i >= e_gaps1[j+step-1]:
  *                     e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+j, step)             # <<<<<<<<<<<<<<
@@ -53036,7 +53211,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
         __pyx_v_e_gaps2 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->int_arr_extend(__pyx_v_self, __pyx_v_e_gaps2, (&__pyx_v_len2), (__pyx_v_e_gaps1 + __pyx_v_j), __pyx_v_step);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1428
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1434
  *                 if i - e_gaps1[j] <= self.train_max_initial_size and i >= e_gaps1[j+step-1]:
  *                     e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+j, step)
  *                     e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &i, 1)             # <<<<<<<<<<<<<<
@@ -53048,7 +53223,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       }
       __pyx_L37:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1429
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1435
  *                     e_gaps2 = self.int_arr_extend(e_gaps2, &len2, e_gaps1+j, step)
  *                     e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &i, 1)
  *                 j = j + step             # <<<<<<<<<<<<<<
@@ -53059,7 +53234,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     }
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1430
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1436
  *                     e_gaps2 = self.int_arr_extend(e_gaps2, &len2, &i, 1)
  *                 j = j + step
  *         free(e_gaps1)             # <<<<<<<<<<<<<<
@@ -53068,7 +53243,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   free(__pyx_v_e_gaps1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1431
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1437
  *                 j = j + step
  *         free(e_gaps1)
  *         e_gaps1 = e_gaps2             # <<<<<<<<<<<<<<
@@ -53077,7 +53252,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_e_gaps1 = __pyx_v_e_gaps2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1432
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1438
  *         free(e_gaps1)
  *         e_gaps1 = e_gaps2
  *         len1 = len2             # <<<<<<<<<<<<<<
@@ -53086,7 +53261,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_len1 = __pyx_v_len2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1434
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1440
  *         len1 = len2
  * 
  *         step = (num_gaps+1)*2             # <<<<<<<<<<<<<<
@@ -53095,7 +53270,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_step = ((__pyx_v_num_gaps + 1) * 2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1435
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1441
  * 
  *         step = (num_gaps+1)*2
  *         i = 0             # <<<<<<<<<<<<<<
@@ -53104,7 +53279,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
   __pyx_v_i = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1437
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1443
  *         i = 0
  * 
  *         while i < len1:             # <<<<<<<<<<<<<<
@@ -53115,7 +53290,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     __pyx_t_2 = (__pyx_v_i < __pyx_v_len1);
     if (!__pyx_t_2) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1438
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1444
  * 
  *         while i < len1:
  *             ephr_arr._clear()             # <<<<<<<<<<<<<<
@@ -53124,7 +53299,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_ephr_arr->__pyx_vtab)->_clear(__pyx_v_ephr_arr);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1439
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1445
  *         while i < len1:
  *             ephr_arr._clear()
  *             num_chunks = 0             # <<<<<<<<<<<<<<
@@ -53133,20 +53308,20 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
  */
     __pyx_v_num_chunks = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1440
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1446
  *             ephr_arr._clear()
  *             num_chunks = 0
  *             indexes = []             # <<<<<<<<<<<<<<
  *             for j from 0 <= j < num_gaps+1:
  *                 if e_gaps1[i+2*j] < e_gaps1[i+(2*j)+1]:
  */
-    __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1440; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1446; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_1);
     __Pyx_XDECREF(((PyObject *)__pyx_v_indexes));
     __pyx_v_indexes = __pyx_t_1;
     __pyx_t_1 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1441
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1447
  *             num_chunks = 0
  *             indexes = []
  *             for j from 0 <= j < num_gaps+1:             # <<<<<<<<<<<<<<
@@ -53156,7 +53331,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
     __pyx_t_9 = (__pyx_v_num_gaps + 1);
     for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_9; __pyx_v_j++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1442
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1448
  *             indexes = []
  *             for j from 0 <= j < num_gaps+1:
  *                 if e_gaps1[i+2*j] < e_gaps1[i+(2*j)+1]:             # <<<<<<<<<<<<<<
@@ -53166,7 +53341,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_t_2 = ((__pyx_v_e_gaps1[(__pyx_v_i + (2 * __pyx_v_j))]) < (__pyx_v_e_gaps1[((__pyx_v_i + (2 * __pyx_v_j)) + 1)]));
       if (__pyx_t_2) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1443
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1449
  *             for j from 0 <= j < num_gaps+1:
  *                 if e_gaps1[i+2*j] < e_gaps1[i+(2*j)+1]:
  *                     num_chunks = num_chunks + 1             # <<<<<<<<<<<<<<
@@ -53178,7 +53353,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       }
       __pyx_L42:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1444
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1450
  *                 if e_gaps1[i+2*j] < e_gaps1[i+(2*j)+1]:
  *                     num_chunks = num_chunks + 1
  *                 for k from e_gaps1[i+2*j] <= k < e_gaps1[i+(2*j)+1]:             # <<<<<<<<<<<<<<
@@ -53188,19 +53363,19 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
       __pyx_t_3 = (__pyx_v_e_gaps1[((__pyx_v_i + (2 * __pyx_v_j)) + 1)]);
       for (__pyx_v_k = (__pyx_v_e_gaps1[(__pyx_v_i + (2 * __pyx_v_j))]); __pyx_v_k < __pyx_t_3; __pyx_v_k++) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1445
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1451
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+        __pyx_t_1 = PyInt_FromLong(__pyx_v_k); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1451; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        __pyx_t_10 = PyList_Append(__pyx_v_indexes, __pyx_t_1); if (unlikely(__pyx_t_10 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1445; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_10 = PyList_Append(__pyx_v_indexes, __pyx_t_1); if (unlikely(__pyx_t_10 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1451; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1446
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1452
  *                 for k from e_gaps1[i+2*j] <= k < e_gaps1[i+(2*j)+1]:
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@@ -53208,14 +53383,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract_phrases(struct _
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1447
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1453
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1448
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1454
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1449
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1450
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1456
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1451
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1452
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1458
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1454
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1460
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1455
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  *         free(e_gaps1)
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1456
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1462
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 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1458
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1460
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1461
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1462
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1463
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1464
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1465
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1471
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1466
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1467
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-      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1467; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = __Pyx_PyObject_IsTrue(__pyx_t_1); if (unlikely(__pyx_t_4 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1473; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1468
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1474
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-        __pyx_t_1 = PyObject_GetAttr(__pyx_v_eindexes, __pyx_n_s__index); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_1 = PyObject_GetAttr(__pyx_v_eindexes, __pyx_n_s__index); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1474; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        __pyx_t_5 = PyNumber_Add(__pyx_v_idx, __pyx_int_1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_5 = PyNumber_Add(__pyx_v_idx, __pyx_int_1); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1474; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+        __pyx_t_6 = __Pyx_PyIndex_AsSsize_t(__pyx_t_5); if (unlikely((__pyx_t_6 == (Py_ssize_t)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1474; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+        __pyx_t_7 = PyTuple_New(1); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1474; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        __pyx_t_5 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_7), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1468; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_5 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_7), NULL); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1474; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1469
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1475
  *                 if (sent_links[idx] == s):
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  *                     ret.append(i*65536+j)             # <<<<<<<<<<<<<<
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-        __pyx_t_5 = PyInt_FromLong((__pyx_v_i * 65536)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1469; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_5 = PyInt_FromLong((__pyx_v_i * 65536)); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1475; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        __pyx_t_7 = PyNumber_Add(__pyx_t_5, __pyx_v_j); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1469; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_7 = PyNumber_Add(__pyx_t_5, __pyx_v_j); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1475; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+        __pyx_t_5 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_ret), __pyx_t_7); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1475; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -53532,14 +53710,14 @@ static struct __pyx_obj_3_sa_IntList *__pyx_f_3_sa_23HieroCachingRuleFactory_cre
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1470
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1476
  *                     j = eindexes.index(sent_links[idx+1])
  *                     ret.append(i*65536+j)
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-      __pyx_t_5 = PyNumber_InPlaceAdd(__pyx_v_idx, __pyx_int_2); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1470; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_5 = PyNumber_InPlaceAdd(__pyx_v_idx, __pyx_int_2); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1476; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1471
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1477
  *                     ret.append(i*65536+j)
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@@ -53578,7 +53756,7 @@ static struct __pyx_obj_3_sa_IntList *__pyx_f_3_sa_23HieroCachingRuleFactory_cre
   return __pyx_r;
 }
 
-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1473
+/* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1479
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1486
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1492
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-  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1486; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1492; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1487
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1493
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  *         fphr_arr = IntList()
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@@ -53693,19 +53871,19 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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   __pyx_v_phrase_len = __pyx_v_phrase->n;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1488
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1494
  *         fphr_arr = IntList()
  *         phrase_len = phrase.n
  *         extracts = []             # <<<<<<<<<<<<<<
  *         sent_links = self.alignment._get_sent_links(matching.sent_id, &num_links)
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-  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1488; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1494; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1489
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1495
  *         phrase_len = phrase.n
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  *         sent_links = self.alignment._get_sent_links(matching.sent_id, &num_links)             # <<<<<<<<<<<<<<
@@ -53714,7 +53892,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1491
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1497
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  * 
  *         e_sent_start = self.eda.sent_index.arr[matching.sent_id]             # <<<<<<<<<<<<<<
@@ -53723,7 +53901,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1492
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1498
  * 
  *         e_sent_start = self.eda.sent_index.arr[matching.sent_id]
  *         e_sent_end = self.eda.sent_index.arr[matching.sent_id+1]             # <<<<<<<<<<<<<<
@@ -53732,7 +53910,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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   __pyx_v_e_sent_end = (__pyx_v_self->eda->sent_index->arr[(__pyx_v_matching->sent_id + 1)]);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1493
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1499
  *         e_sent_start = self.eda.sent_index.arr[matching.sent_id]
  *         e_sent_end = self.eda.sent_index.arr[matching.sent_id+1]
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@@ -53741,7 +53919,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1494
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1500
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  *         e_sent_len = e_sent_end - e_sent_start - 1
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@@ -53750,7 +53928,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1495
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1501
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1496
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1502
  *         f_sent_start = self.fda.sent_index.arr[matching.sent_id]
  *         f_sent_end = self.fda.sent_index.arr[matching.sent_id+1]
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1498
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1504
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  *         self.findexes1.reset()             # <<<<<<<<<<<<<<
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-  __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes1), __pyx_n_s__reset); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1498; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes1), __pyx_n_s__reset); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1504; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+  __pyx_t_2 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1504; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1499
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1505
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  *         self.findexes1.reset()
  *         sofar = 0             # <<<<<<<<<<<<<<
@@ -53792,7 +53970,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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   __pyx_v_sofar = __pyx_int_0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1500
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1506
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  *         sofar = 0
  *         for i in range(num_chunks):             # <<<<<<<<<<<<<<
@@ -53803,7 +53981,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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     __pyx_v_i = __pyx_t_4;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1501
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1507
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  *         for i in range(num_chunks):
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@@ -53814,35 +53992,35 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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       __pyx_v_j = __pyx_t_6;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1502
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1508
  *         for i in range(num_chunks):
  *             for j in range(chunklen[i]):
  *                 self.findexes1.append(matching.arr[matching.start+i]+j-f_sent_start);             # <<<<<<<<<<<<<<
  *                 sofar += 1
  *             if (i+1<num_chunks):
  */
-      __pyx_t_2 = PyInt_FromLong((((__pyx_v_matching->arr[(__pyx_v_matching->start + __pyx_v_i)]) + __pyx_v_j) - __pyx_v_f_sent_start)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1502; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = PyInt_FromLong((((__pyx_v_matching->arr[(__pyx_v_matching->start + __pyx_v_i)]) + __pyx_v_j) - __pyx_v_f_sent_start)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1508; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
-      __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes1), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1502; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes1), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1508; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_1);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
       __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1503
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1509
  *             for j in range(chunklen[i]):
  *                 self.findexes1.append(matching.arr[matching.start+i]+j-f_sent_start);
  *                 sofar += 1             # <<<<<<<<<<<<<<
  *             if (i+1<num_chunks):
  *                 self.findexes1.append(phrase[sofar])
  */
-      __pyx_t_1 = PyNumber_InPlaceAdd(__pyx_v_sofar, __pyx_int_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1503; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_1 = PyNumber_InPlaceAdd(__pyx_v_sofar, __pyx_int_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1509; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_1);
       __Pyx_DECREF(__pyx_v_sofar);
       __pyx_v_sofar = __pyx_t_1;
       __pyx_t_1 = 0;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1504
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1510
  *                 self.findexes1.append(matching.arr[matching.start+i]+j-f_sent_start);
  *                 sofar += 1
  *             if (i+1<num_chunks):             # <<<<<<<<<<<<<<
@@ -53852,28 +54030,28 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_t_7 = ((__pyx_v_i + 1) < __pyx_v_num_chunks);
     if (__pyx_t_7) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1505
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1511
  *                 sofar += 1
  *             if (i+1<num_chunks):
  *                 self.findexes1.append(phrase[sofar])             # <<<<<<<<<<<<<<
  *                 sofar += 1
  * 
  */
-      __pyx_t_1 = PyObject_GetItem(((PyObject *)__pyx_v_phrase), __pyx_v_sofar); if (!__pyx_t_1) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1505; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_1 = PyObject_GetItem(((PyObject *)__pyx_v_phrase), __pyx_v_sofar); if (!__pyx_t_1) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1511; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_1);
-      __pyx_t_2 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes1), __pyx_t_1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1505; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes1), __pyx_t_1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1511; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1506
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1512
  *             if (i+1<num_chunks):
  *                 self.findexes1.append(phrase[sofar])
  *                 sofar += 1             # <<<<<<<<<<<<<<
  * 
  * 
  */
-      __pyx_t_2 = PyNumber_InPlaceAdd(__pyx_v_sofar, __pyx_int_1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1506; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = PyNumber_InPlaceAdd(__pyx_v_sofar, __pyx_int_1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1512; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
       __Pyx_DECREF(__pyx_v_sofar);
       __pyx_v_sofar = __pyx_t_2;
@@ -53883,7 +54061,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_L7:;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1509
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1515
  * 
  * 
  *         e_links_low = <int*> malloc(e_sent_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53892,7 +54070,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_e_links_low = ((int *)malloc((__pyx_v_e_sent_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1510
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1516
  * 
  *         e_links_low = <int*> malloc(e_sent_len*sizeof(int))
  *         e_links_high = <int*> malloc(e_sent_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53901,7 +54079,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_e_links_high = ((int *)malloc((__pyx_v_e_sent_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1511
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1517
  *         e_links_low = <int*> malloc(e_sent_len*sizeof(int))
  *         e_links_high = <int*> malloc(e_sent_len*sizeof(int))
  *         f_links_low = <int*> malloc(f_sent_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53910,7 +54088,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_f_links_low = ((int *)malloc((__pyx_v_f_sent_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1512
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1518
  *         e_links_high = <int*> malloc(e_sent_len*sizeof(int))
  *         f_links_low = <int*> malloc(f_sent_len*sizeof(int))
  *         f_links_high = <int*> malloc(f_sent_len*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53919,7 +54097,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_f_links_high = ((int *)malloc((__pyx_v_f_sent_len * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1513
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1519
  *         f_links_low = <int*> malloc(f_sent_len*sizeof(int))
  *         f_links_high = <int*> malloc(f_sent_len*sizeof(int))
  *         f_gap_low = <int*> malloc((num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53928,7 +54106,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_f_gap_low = ((int *)malloc(((__pyx_v_num_chunks + 1) * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1514
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1520
  *         f_links_high = <int*> malloc(f_sent_len*sizeof(int))
  *         f_gap_low = <int*> malloc((num_chunks+1)*sizeof(int))
  *         f_gap_high = <int*> malloc((num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53937,7 +54115,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_f_gap_high = ((int *)malloc(((__pyx_v_num_chunks + 1) * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1515
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1521
  *         f_gap_low = <int*> malloc((num_chunks+1)*sizeof(int))
  *         f_gap_high = <int*> malloc((num_chunks+1)*sizeof(int))
  *         e_gap_low = <int*> malloc((num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53946,7 +54124,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_e_gap_low = ((int *)malloc(((__pyx_v_num_chunks + 1) * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1516
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1522
  *         f_gap_high = <int*> malloc((num_chunks+1)*sizeof(int))
  *         e_gap_low = <int*> malloc((num_chunks+1)*sizeof(int))
  *         e_gap_high = <int*> malloc((num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53955,7 +54133,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_e_gap_high = ((int *)malloc(((__pyx_v_num_chunks + 1) * (sizeof(int)))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1517
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1523
  *         e_gap_low = <int*> malloc((num_chunks+1)*sizeof(int))
  *         e_gap_high = <int*> malloc((num_chunks+1)*sizeof(int))
  *         memset(f_gap_low, 0, (num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53964,7 +54142,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   memset(__pyx_v_f_gap_low, 0, ((__pyx_v_num_chunks + 1) * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1518
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1524
  *         e_gap_high = <int*> malloc((num_chunks+1)*sizeof(int))
  *         memset(f_gap_low, 0, (num_chunks+1)*sizeof(int))
  *         memset(f_gap_high, 0, (num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53973,7 +54151,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   memset(__pyx_v_f_gap_high, 0, ((__pyx_v_num_chunks + 1) * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1519
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1525
  *         memset(f_gap_low, 0, (num_chunks+1)*sizeof(int))
  *         memset(f_gap_high, 0, (num_chunks+1)*sizeof(int))
  *         memset(e_gap_low, 0, (num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53982,7 +54160,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   memset(__pyx_v_e_gap_low, 0, ((__pyx_v_num_chunks + 1) * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1520
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1526
  *         memset(f_gap_high, 0, (num_chunks+1)*sizeof(int))
  *         memset(e_gap_low, 0, (num_chunks+1)*sizeof(int))
  *         memset(e_gap_high, 0, (num_chunks+1)*sizeof(int))             # <<<<<<<<<<<<<<
@@ -53991,7 +54169,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   memset(__pyx_v_e_gap_high, 0, ((__pyx_v_num_chunks + 1) * (sizeof(int))));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1522
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1528
  *         memset(e_gap_high, 0, (num_chunks+1)*sizeof(int))
  * 
  *         reason_for_failure = ""             # <<<<<<<<<<<<<<
@@ -54001,7 +54179,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
   __Pyx_INCREF(((PyObject *)__pyx_kp_s_45));
   __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_45);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1524
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1530
  *         reason_for_failure = ""
  * 
  *         for i from 0 <= i < e_sent_len:             # <<<<<<<<<<<<<<
@@ -54011,7 +54189,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
   __pyx_t_3 = __pyx_v_e_sent_len;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1525
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1531
  * 
  *         for i from 0 <= i < e_sent_len:
  *             e_links_low[i] = -1             # <<<<<<<<<<<<<<
@@ -54020,7 +54198,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
     (__pyx_v_e_links_low[__pyx_v_i]) = -1;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1526
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1532
  *         for i from 0 <= i < e_sent_len:
  *             e_links_low[i] = -1
  *             e_links_high[i] = -1             # <<<<<<<<<<<<<<
@@ -54030,7 +54208,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     (__pyx_v_e_links_high[__pyx_v_i]) = -1;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1527
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1533
  *             e_links_low[i] = -1
  *             e_links_high[i] = -1
  *         for i from 0 <= i < f_sent_len:             # <<<<<<<<<<<<<<
@@ -54040,7 +54218,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
   __pyx_t_3 = __pyx_v_f_sent_len;
   for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1528
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1534
  *             e_links_high[i] = -1
  *         for i from 0 <= i < f_sent_len:
  *             f_links_low[i] = -1             # <<<<<<<<<<<<<<
@@ -54049,7 +54227,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
     (__pyx_v_f_links_low[__pyx_v_i]) = -1;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1529
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1535
  *         for i from 0 <= i < f_sent_len:
  *             f_links_low[i] = -1
  *             f_links_high[i] = -1             # <<<<<<<<<<<<<<
@@ -54059,7 +54237,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     (__pyx_v_f_links_high[__pyx_v_i]) = -1;
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1535
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1541
  *         # links that we care about (but then how to look up
  *         # when we want to check something on the e side?)
  *         i = 0             # <<<<<<<<<<<<<<
@@ -54068,7 +54246,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_i = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1536
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1542
  *         # when we want to check something on the e side?)
  *         i = 0
  *         while i < num_links*2:             # <<<<<<<<<<<<<<
@@ -54079,7 +54257,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_t_7 = (__pyx_v_i < (__pyx_v_num_links * 2));
     if (!__pyx_t_7) break;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1537
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1543
  *         i = 0
  *         while i < num_links*2:
  *             f_i = sent_links[i]             # <<<<<<<<<<<<<<
@@ -54088,7 +54266,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
     __pyx_v_f_i = (__pyx_v_sent_links[__pyx_v_i]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1538
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1544
  *         while i < num_links*2:
  *             f_i = sent_links[i]
  *             e_i = sent_links[i+1]             # <<<<<<<<<<<<<<
@@ -54097,7 +54275,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
     __pyx_v_e_i = (__pyx_v_sent_links[(__pyx_v_i + 1)]);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1539
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1545
  *             f_i = sent_links[i]
  *             e_i = sent_links[i+1]
  *             if f_links_low[f_i] == -1 or f_links_low[f_i] > e_i:             # <<<<<<<<<<<<<<
@@ -54113,7 +54291,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     if (__pyx_t_9) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1540
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1546
  *             e_i = sent_links[i+1]
  *             if f_links_low[f_i] == -1 or f_links_low[f_i] > e_i:
  *                 f_links_low[f_i] = e_i             # <<<<<<<<<<<<<<
@@ -54125,7 +54303,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     __pyx_L14:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1541
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1547
  *             if f_links_low[f_i] == -1 or f_links_low[f_i] > e_i:
  *                 f_links_low[f_i] = e_i
  *             if f_links_high[f_i] == -1 or f_links_high[f_i] < e_i + 1:             # <<<<<<<<<<<<<<
@@ -54141,7 +54319,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     if (__pyx_t_8) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1542
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1548
  *                 f_links_low[f_i] = e_i
  *             if f_links_high[f_i] == -1 or f_links_high[f_i] < e_i + 1:
  *                 f_links_high[f_i] = e_i + 1             # <<<<<<<<<<<<<<
@@ -54153,7 +54331,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     __pyx_L15:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1543
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1549
  *             if f_links_high[f_i] == -1 or f_links_high[f_i] < e_i + 1:
  *                 f_links_high[f_i] = e_i + 1
  *             if e_links_low[e_i] == -1 or e_links_low[e_i] > f_i:             # <<<<<<<<<<<<<<
@@ -54169,7 +54347,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     if (__pyx_t_7) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1544
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1550
  *                 f_links_high[f_i] = e_i + 1
  *             if e_links_low[e_i] == -1 or e_links_low[e_i] > f_i:
  *                 e_links_low[e_i] = f_i             # <<<<<<<<<<<<<<
@@ -54181,7 +54359,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     __pyx_L16:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1545
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1551
  *             if e_links_low[e_i] == -1 or e_links_low[e_i] > f_i:
  *                 e_links_low[e_i] = f_i
  *             if e_links_high[e_i] == -1 or e_links_high[e_i] < f_i + 1:             # <<<<<<<<<<<<<<
@@ -54197,7 +54375,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     if (__pyx_t_9) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1546
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1552
  *                 e_links_low[e_i] = f_i
  *             if e_links_high[e_i] == -1 or e_links_high[e_i] < f_i + 1:
  *                 e_links_high[e_i] = f_i + 1             # <<<<<<<<<<<<<<
@@ -54209,7 +54387,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     __pyx_L17:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1547
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1553
  *             if e_links_high[e_i] == -1 or e_links_high[e_i] < f_i + 1:
  *                 e_links_high[e_i] = f_i + 1
  *             i = i + 2             # <<<<<<<<<<<<<<
@@ -54219,19 +54397,19 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_v_i = (__pyx_v_i + 2);
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1549
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1555
  *             i = i + 2
  * 
  *         als = []             # <<<<<<<<<<<<<<
  *         for x in range(matching.start,matching.end):
  *             al = (matching.arr[x]-f_sent_start,f_links_low[matching.arr[x]-f_sent_start])
  */
-  __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1549; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1555; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
   __pyx_v_als = __pyx_t_2;
   __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1550
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1556
  * 
  *         als = []
  *         for x in range(matching.start,matching.end):             # <<<<<<<<<<<<<<
@@ -54242,18 +54420,18 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
   for (__pyx_t_4 = __pyx_v_matching->start; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
     __pyx_v_x = __pyx_t_4;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1551
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1557
  *         als = []
  *         for x in range(matching.start,matching.end):
  *             al = (matching.arr[x]-f_sent_start,f_links_low[matching.arr[x]-f_sent_start])             # <<<<<<<<<<<<<<
  *             als.append(al)
  *         # check all source-side alignment constraints
  */
-    __pyx_t_2 = PyInt_FromLong(((__pyx_v_matching->arr[__pyx_v_x]) - __pyx_v_f_sent_start)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1551; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_2 = PyInt_FromLong(((__pyx_v_matching->arr[__pyx_v_x]) - __pyx_v_f_sent_start)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1557; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_2);
-    __pyx_t_1 = PyInt_FromLong((__pyx_v_f_links_low[((__pyx_v_matching->arr[__pyx_v_x]) - __pyx_v_f_sent_start)])); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1551; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_1 = PyInt_FromLong((__pyx_v_f_links_low[((__pyx_v_matching->arr[__pyx_v_x]) - __pyx_v_f_sent_start)])); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1557; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_1);
-    __pyx_t_10 = PyTuple_New(2); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1551; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_10 = PyTuple_New(2); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1557; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_10);
     PyTuple_SET_ITEM(__pyx_t_10, 0, __pyx_t_2);
     __Pyx_GIVEREF(__pyx_t_2);
@@ -54265,17 +54443,17 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_v_al = __pyx_t_10;
     __pyx_t_10 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1552
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1558
  *         for x in range(matching.start,matching.end):
  *             al = (matching.arr[x]-f_sent_start,f_links_low[matching.arr[x]-f_sent_start])
  *             als.append(al)             # <<<<<<<<<<<<<<
  *         # check all source-side alignment constraints
  *         met_constraints = 1
  */
-    __pyx_t_11 = PyList_Append(__pyx_v_als, ((PyObject *)__pyx_v_al)); if (unlikely(__pyx_t_11 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1552; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_11 = PyList_Append(__pyx_v_als, ((PyObject *)__pyx_v_al)); if (unlikely(__pyx_t_11 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1558; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   }
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1554
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1560
  *             als.append(al)
  *         # check all source-side alignment constraints
  *         met_constraints = 1             # <<<<<<<<<<<<<<
@@ -54284,7 +54462,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_met_constraints = 1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1555
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1561
  *         # check all source-side alignment constraints
  *         met_constraints = 1
  *         if self.require_aligned_terminal:             # <<<<<<<<<<<<<<
@@ -54293,7 +54471,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   if (__pyx_v_self->require_aligned_terminal) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1556
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1562
  *         met_constraints = 1
  *         if self.require_aligned_terminal:
  *             num_aligned_chunks = 0             # <<<<<<<<<<<<<<
@@ -54302,7 +54480,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
     __pyx_v_num_aligned_chunks = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1557
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1563
  *         if self.require_aligned_terminal:
  *             num_aligned_chunks = 0
  *             for i from 0 <= i < num_chunks:             # <<<<<<<<<<<<<<
@@ -54312,7 +54490,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_t_3 = __pyx_v_num_chunks;
     for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1558
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1564
  *             num_aligned_chunks = 0
  *             for i from 0 <= i < num_chunks:
  *                 for j from 0 <= j < chunklen[i]:             # <<<<<<<<<<<<<<
@@ -54322,7 +54500,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_4 = (__pyx_v_chunklen[__pyx_v_i]);
       for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_4; __pyx_v_j++) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1559
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1565
  *             for i from 0 <= i < num_chunks:
  *                 for j from 0 <= j < chunklen[i]:
  *                     if f_links_low[matching.arr[matching.start+i]+j-f_sent_start] > -1:             # <<<<<<<<<<<<<<
@@ -54332,7 +54510,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_9 = ((__pyx_v_f_links_low[(((__pyx_v_matching->arr[(__pyx_v_matching->start + __pyx_v_i)]) + __pyx_v_j) - __pyx_v_f_sent_start)]) > -1);
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1560
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1566
  *                 for j from 0 <= j < chunklen[i]:
  *                     if f_links_low[matching.arr[matching.start+i]+j-f_sent_start] > -1:
  *                         num_aligned_chunks = num_aligned_chunks + 1             # <<<<<<<<<<<<<<
@@ -54341,7 +54519,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
           __pyx_v_num_aligned_chunks = (__pyx_v_num_aligned_chunks + 1);
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1561
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1567
  *                     if f_links_low[matching.arr[matching.start+i]+j-f_sent_start] > -1:
  *                         num_aligned_chunks = num_aligned_chunks + 1
  *                         break             # <<<<<<<<<<<<<<
@@ -54356,7 +54534,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_L24_break:;
     }
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1562
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1568
  *                         num_aligned_chunks = num_aligned_chunks + 1
  *                         break
  *             if num_aligned_chunks == 0:             # <<<<<<<<<<<<<<
@@ -54366,18 +54544,18 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_t_9 = (__pyx_v_num_aligned_chunks == 0);
     if (__pyx_t_9) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1563
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1569
  *                         break
  *             if num_aligned_chunks == 0:
  *                 reason_for_failure = "No aligned terminals"             # <<<<<<<<<<<<<<
  *                 met_constraints = 0
  *             if self.require_aligned_chunks and num_aligned_chunks < num_chunks:
  */
-      __Pyx_INCREF(((PyObject *)__pyx_kp_s_126));
+      __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
       __Pyx_DECREF(__pyx_v_reason_for_failure);
-      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_126);
+      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1564
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1570
  *             if num_aligned_chunks == 0:
  *                 reason_for_failure = "No aligned terminals"
  *                 met_constraints = 0             # <<<<<<<<<<<<<<
@@ -54389,7 +54567,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     __pyx_L26:;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1565
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1571
  *                 reason_for_failure = "No aligned terminals"
  *                 met_constraints = 0
  *             if self.require_aligned_chunks and num_aligned_chunks < num_chunks:             # <<<<<<<<<<<<<<
@@ -54404,18 +54582,18 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     if (__pyx_t_7) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1566
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1572
  *                 met_constraints = 0
  *             if self.require_aligned_chunks and num_aligned_chunks < num_chunks:
  *                 reason_for_failure = "Unaligned chunk"             # <<<<<<<<<<<<<<
  *                 met_constraints = 0
  * 
  */
-      __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
+      __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
       __Pyx_DECREF(__pyx_v_reason_for_failure);
-      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
+      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1567
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1573
  *             if self.require_aligned_chunks and num_aligned_chunks < num_chunks:
  *                 reason_for_failure = "Unaligned chunk"
  *                 met_constraints = 0             # <<<<<<<<<<<<<<
@@ -54430,7 +54608,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
   }
   __pyx_L20:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1569
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1575
  *                 met_constraints = 0
  * 
  *         if met_constraints and self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -54445,7 +54623,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
   }
   if (__pyx_t_9) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1571
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1577
  *         if met_constraints and self.tight_phrases:
  *             # outside edge constraints are checked later
  *             for i from 0 <= i < num_chunks-1:             # <<<<<<<<<<<<<<
@@ -54455,7 +54633,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __pyx_t_12 = (__pyx_v_num_chunks - 1);
     for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_12; __pyx_v_i++) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1572
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1578
  *             # outside edge constraints are checked later
  *             for i from 0 <= i < num_chunks-1:
  *                 if f_links_low[matching.arr[matching.start+i]+chunklen[i]-f_sent_start] == -1:             # <<<<<<<<<<<<<<
@@ -54465,18 +54643,18 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_9 = ((__pyx_v_f_links_low[(((__pyx_v_matching->arr[(__pyx_v_matching->start + __pyx_v_i)]) + (__pyx_v_chunklen[__pyx_v_i])) - __pyx_v_f_sent_start)]) == -1);
       if (__pyx_t_9) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1573
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1579
  *             for i from 0 <= i < num_chunks-1:
  *                 if f_links_low[matching.arr[matching.start+i]+chunklen[i]-f_sent_start] == -1:
  *                     reason_for_failure = "Gaps are not tight phrases"             # <<<<<<<<<<<<<<
  *                     met_constraints = 0
  *                     break
  */
-        __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
+        __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
         __Pyx_DECREF(__pyx_v_reason_for_failure);
-        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
+        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1574
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1580
  *                 if f_links_low[matching.arr[matching.start+i]+chunklen[i]-f_sent_start] == -1:
  *                     reason_for_failure = "Gaps are not tight phrases"
  *                     met_constraints = 0             # <<<<<<<<<<<<<<
@@ -54485,7 +54663,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_met_constraints = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1575
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1581
  *                     reason_for_failure = "Gaps are not tight phrases"
  *                     met_constraints = 0
  *                     break             # <<<<<<<<<<<<<<
@@ -54497,7 +54675,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       }
       __pyx_L31:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1576
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1582
  *                     met_constraints = 0
  *                     break
  *                 if f_links_low[matching.arr[matching.start+i+1]-1-f_sent_start] == -1:             # <<<<<<<<<<<<<<
@@ -54507,18 +54685,18 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_9 = ((__pyx_v_f_links_low[(((__pyx_v_matching->arr[((__pyx_v_matching->start + __pyx_v_i) + 1)]) - 1) - __pyx_v_f_sent_start)]) == -1);
       if (__pyx_t_9) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1577
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1583
  *                     break
  *                 if f_links_low[matching.arr[matching.start+i+1]-1-f_sent_start] == -1:
  *                     reason_for_failure = "Gaps are not tight phrases"             # <<<<<<<<<<<<<<
  *                     met_constraints = 0
  *                     break
  */
-        __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
+        __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
         __Pyx_DECREF(__pyx_v_reason_for_failure);
-        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
+        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1578
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1584
  *                 if f_links_low[matching.arr[matching.start+i+1]-1-f_sent_start] == -1:
  *                     reason_for_failure = "Gaps are not tight phrases"
  *                     met_constraints = 0             # <<<<<<<<<<<<<<
@@ -54527,7 +54705,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_met_constraints = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1579
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1585
  *                     reason_for_failure = "Gaps are not tight phrases"
  *                     met_constraints = 0
  *                     break             # <<<<<<<<<<<<<<
@@ -54544,7 +54722,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
   }
   __pyx_L28:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1581
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1587
  *                     break
  * 
  *         f_low = matching.arr[matching.start] - f_sent_start             # <<<<<<<<<<<<<<
@@ -54553,7 +54731,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_f_low = ((__pyx_v_matching->arr[__pyx_v_matching->start]) - __pyx_v_f_sent_start);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1582
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1588
  * 
  *         f_low = matching.arr[matching.start] - f_sent_start
  *         f_high = matching.arr[matching.start + matching.size - 1] + chunklen[num_chunks-1] - f_sent_start             # <<<<<<<<<<<<<<
@@ -54562,7 +54740,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   __pyx_v_f_high = (((__pyx_v_matching->arr[((__pyx_v_matching->start + __pyx_v_matching->size) - 1)]) + (__pyx_v_chunklen[(__pyx_v_num_chunks - 1)])) - __pyx_v_f_sent_start);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1583
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1589
  *         f_low = matching.arr[matching.start] - f_sent_start
  *         f_high = matching.arr[matching.start + matching.size - 1] + chunklen[num_chunks-1] - f_sent_start
  *         if met_constraints:             # <<<<<<<<<<<<<<
@@ -54571,17 +54749,17 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   if (__pyx_v_met_constraints) {
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1585
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1591
  *         if met_constraints:
  * 
  *             if self.find_fixpoint(f_low, f_high, f_links_low, f_links_high, e_links_low, e_links_high,             # <<<<<<<<<<<<<<
  *                                 -1, -1, &e_low, &e_high, &f_back_low, &f_back_high, f_sent_len, e_sent_len,
  *                                 self.train_max_initial_size, self.train_max_initial_size,
  */
-    __pyx_t_10 = PyInt_FromLong(__pyx_v_f_high); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1585; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __pyx_t_10 = PyInt_FromLong(__pyx_v_f_high); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1591; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
     __Pyx_GOTREF(__pyx_t_10);
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1589
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1595
  *                                 self.train_max_initial_size, self.train_max_initial_size,
  *                                 self.train_min_gap_size, 0,
  *                                 self.max_nonterminals - num_chunks + 1, 1, 1, 0, 0):             # <<<<<<<<<<<<<<
@@ -54592,7 +54770,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
     if (__pyx_t_3) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1590
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1596
  *                                 self.train_min_gap_size, 0,
  *                                 self.max_nonterminals - num_chunks + 1, 1, 1, 0, 0):
  *                 gap_error = 0             # <<<<<<<<<<<<<<
@@ -54601,7 +54779,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
       __pyx_v_gap_error = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1591
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1597
  *                                 self.max_nonterminals - num_chunks + 1, 1, 1, 0, 0):
  *                 gap_error = 0
  *                 num_gaps = 0             # <<<<<<<<<<<<<<
@@ -54610,7 +54788,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
       __pyx_v_num_gaps = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1593
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1599
  *                 num_gaps = 0
  * 
  *                 if f_back_low < f_low:             # <<<<<<<<<<<<<<
@@ -54620,7 +54798,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_9 = (__pyx_v_f_back_low < __pyx_v_f_low);
       if (__pyx_t_9) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1594
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1600
  * 
  *                 if f_back_low < f_low:
  *                     f_gap_low[0] = f_back_low             # <<<<<<<<<<<<<<
@@ -54629,7 +54807,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         (__pyx_v_f_gap_low[0]) = __pyx_v_f_back_low;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1595
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1601
  *                 if f_back_low < f_low:
  *                     f_gap_low[0] = f_back_low
  *                     f_gap_high[0] = f_low             # <<<<<<<<<<<<<<
@@ -54638,7 +54816,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         (__pyx_v_f_gap_high[0]) = __pyx_v_f_low;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1596
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1602
  *                     f_gap_low[0] = f_back_low
  *                     f_gap_high[0] = f_low
  *                     num_gaps = 1             # <<<<<<<<<<<<<<
@@ -54647,7 +54825,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_num_gaps = 1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1597
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1603
  *                     f_gap_high[0] = f_low
  *                     num_gaps = 1
  *                     gap_start = 0             # <<<<<<<<<<<<<<
@@ -54656,7 +54834,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_gap_start = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1598
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1604
  *                     num_gaps = 1
  *                     gap_start = 0
  *                     phrase_len = phrase_len+1             # <<<<<<<<<<<<<<
@@ -54665,7 +54843,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_phrase_len = (__pyx_v_phrase_len + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1599
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1605
  *                     gap_start = 0
  *                     phrase_len = phrase_len+1
  *                     if phrase_len > self.max_length:             # <<<<<<<<<<<<<<
@@ -54675,7 +54853,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_9 = (__pyx_v_phrase_len > __pyx_v_self->max_length);
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1600
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1606
  *                     phrase_len = phrase_len+1
  *                     if phrase_len > self.max_length:
  *                         gap_error = 1             # <<<<<<<<<<<<<<
@@ -54687,7 +54865,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         __pyx_L36:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1601
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1607
  *                     if phrase_len > self.max_length:
  *                         gap_error = 1
  *                     if self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -54696,7 +54874,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         if (__pyx_v_self->tight_phrases) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1602
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1608
  *                         gap_error = 1
  *                     if self.tight_phrases:
  *                         if f_links_low[f_back_low] == -1 or f_links_low[f_low-1] == -1:             # <<<<<<<<<<<<<<
@@ -54712,7 +54890,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           }
           if (__pyx_t_8) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1603
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1609
  *                     if self.tight_phrases:
  *                         if f_links_low[f_back_low] == -1 or f_links_low[f_low-1] == -1:
  *                             gap_error = 1             # <<<<<<<<<<<<<<
@@ -54721,16 +54899,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_gap_error = 1;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1604
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1610
  *                         if f_links_low[f_back_low] == -1 or f_links_low[f_low-1] == -1:
  *                             gap_error = 1
  *                             reason_for_failure = "Inside edges of preceding subphrase are not tight"             # <<<<<<<<<<<<<<
  *                 else:
  *                     gap_start = 1
  */
-            __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
+            __Pyx_INCREF(((PyObject *)__pyx_kp_s_130));
             __Pyx_DECREF(__pyx_v_reason_for_failure);
-            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
+            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_130);
             goto __pyx_L38;
           }
           __pyx_L38:;
@@ -54741,7 +54919,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1606
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1612
  *                             reason_for_failure = "Inside edges of preceding subphrase are not tight"
  *                 else:
  *                     gap_start = 1             # <<<<<<<<<<<<<<
@@ -54750,7 +54928,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_gap_start = 1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1607
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1613
  *                 else:
  *                     gap_start = 1
  *                     if self.tight_phrases and f_links_low[f_low] == -1:             # <<<<<<<<<<<<<<
@@ -54765,7 +54943,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1610
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1616
  *                         # this is not a hard error.    we can't extract this phrase
  *                         # but we still might be able to extract a superphrase
  *                         met_constraints = 0             # <<<<<<<<<<<<<<
@@ -54779,7 +54957,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       }
       __pyx_L35:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1612
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1618
  *                         met_constraints = 0
  * 
  *                 for i from 0 <= i < matching.size - 1:             # <<<<<<<<<<<<<<
@@ -54789,7 +54967,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_12 = (__pyx_v_matching->size - 1);
       for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_12; __pyx_v_i++) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1613
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1619
  * 
  *                 for i from 0 <= i < matching.size - 1:
  *                     f_gap_low[1+i] = matching.arr[matching.start+i] + chunklen[i] - f_sent_start             # <<<<<<<<<<<<<<
@@ -54798,7 +54976,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         (__pyx_v_f_gap_low[(1 + __pyx_v_i)]) = (((__pyx_v_matching->arr[(__pyx_v_matching->start + __pyx_v_i)]) + (__pyx_v_chunklen[__pyx_v_i])) - __pyx_v_f_sent_start);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1614
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1620
  *                 for i from 0 <= i < matching.size - 1:
  *                     f_gap_low[1+i] = matching.arr[matching.start+i] + chunklen[i] - f_sent_start
  *                     f_gap_high[1+i] = matching.arr[matching.start+i+1] - f_sent_start             # <<<<<<<<<<<<<<
@@ -54807,7 +54985,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         (__pyx_v_f_gap_high[(1 + __pyx_v_i)]) = ((__pyx_v_matching->arr[((__pyx_v_matching->start + __pyx_v_i) + 1)]) - __pyx_v_f_sent_start);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1615
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1621
  *                     f_gap_low[1+i] = matching.arr[matching.start+i] + chunklen[i] - f_sent_start
  *                     f_gap_high[1+i] = matching.arr[matching.start+i+1] - f_sent_start
  *                     num_gaps = num_gaps + 1             # <<<<<<<<<<<<<<
@@ -54817,7 +54995,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_v_num_gaps = (__pyx_v_num_gaps + 1);
       }
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1617
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1623
  *                     num_gaps = num_gaps + 1
  * 
  *                 if f_high < f_back_high:             # <<<<<<<<<<<<<<
@@ -54827,7 +55005,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_9 = (__pyx_v_f_high < __pyx_v_f_back_high);
       if (__pyx_t_9) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1618
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1624
  * 
  *                 if f_high < f_back_high:
  *                     f_gap_low[gap_start+num_gaps] = f_high             # <<<<<<<<<<<<<<
@@ -54836,7 +55014,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         (__pyx_v_f_gap_low[(__pyx_v_gap_start + __pyx_v_num_gaps)]) = __pyx_v_f_high;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1619
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1625
  *                 if f_high < f_back_high:
  *                     f_gap_low[gap_start+num_gaps] = f_high
  *                     f_gap_high[gap_start+num_gaps] = f_back_high             # <<<<<<<<<<<<<<
@@ -54845,7 +55023,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         (__pyx_v_f_gap_high[(__pyx_v_gap_start + __pyx_v_num_gaps)]) = __pyx_v_f_back_high;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1620
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1626
  *                     f_gap_low[gap_start+num_gaps] = f_high
  *                     f_gap_high[gap_start+num_gaps] = f_back_high
  *                     num_gaps = num_gaps + 1             # <<<<<<<<<<<<<<
@@ -54854,7 +55032,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_num_gaps = (__pyx_v_num_gaps + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1621
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1627
  *                     f_gap_high[gap_start+num_gaps] = f_back_high
  *                     num_gaps = num_gaps + 1
  *                     phrase_len = phrase_len+1             # <<<<<<<<<<<<<<
@@ -54863,7 +55041,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_phrase_len = (__pyx_v_phrase_len + 1);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1622
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1628
  *                     num_gaps = num_gaps + 1
  *                     phrase_len = phrase_len+1
  *                     if phrase_len > self.max_length:             # <<<<<<<<<<<<<<
@@ -54873,7 +55051,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_9 = (__pyx_v_phrase_len > __pyx_v_self->max_length);
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1623
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1629
  *                     phrase_len = phrase_len+1
  *                     if phrase_len > self.max_length:
  *                         gap_error = 1             # <<<<<<<<<<<<<<
@@ -54885,7 +55063,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         __pyx_L43:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1624
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1630
  *                     if phrase_len > self.max_length:
  *                         gap_error = 1
  *                     if self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -54894,7 +55072,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         if (__pyx_v_self->tight_phrases) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1625
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1631
  *                         gap_error = 1
  *                     if self.tight_phrases:
  *                         if f_links_low[f_back_high-1] == -1 or f_links_low[f_high] == -1:             # <<<<<<<<<<<<<<
@@ -54910,7 +55088,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           }
           if (__pyx_t_7) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1626
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1632
  *                     if self.tight_phrases:
  *                         if f_links_low[f_back_high-1] == -1 or f_links_low[f_high] == -1:
  *                             gap_error = 1             # <<<<<<<<<<<<<<
@@ -54919,16 +55097,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_gap_error = 1;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1627
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1633
  *                         if f_links_low[f_back_high-1] == -1 or f_links_low[f_high] == -1:
  *                             gap_error = 1
  *                             reason_for_failure = "Inside edges of following subphrase are not tight"             # <<<<<<<<<<<<<<
  *                 else:
  *                     if self.tight_phrases and f_links_low[f_high-1] == -1:
  */
-            __Pyx_INCREF(((PyObject *)__pyx_kp_s_130));
+            __Pyx_INCREF(((PyObject *)__pyx_kp_s_131));
             __Pyx_DECREF(__pyx_v_reason_for_failure);
-            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_130);
+            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_131);
             goto __pyx_L45;
           }
           __pyx_L45:;
@@ -54939,7 +55117,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       }
       /*else*/ {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1629
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1635
  *                             reason_for_failure = "Inside edges of following subphrase are not tight"
  *                 else:
  *                     if self.tight_phrases and f_links_low[f_high-1] == -1:             # <<<<<<<<<<<<<<
@@ -54954,7 +55132,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1630
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1636
  *                 else:
  *                     if self.tight_phrases and f_links_low[f_high-1] == -1:
  *                         met_constraints = 0             # <<<<<<<<<<<<<<
@@ -54968,7 +55146,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       }
       __pyx_L42:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1632
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1638
  *                         met_constraints = 0
  * 
  *                 if gap_error == 0:             # <<<<<<<<<<<<<<
@@ -54978,7 +55156,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_9 = (__pyx_v_gap_error == 0);
       if (__pyx_t_9) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1633
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1639
  * 
  *                 if gap_error == 0:
  *                     e_word_count = e_high - e_low             # <<<<<<<<<<<<<<
@@ -54987,7 +55165,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_e_word_count = (__pyx_v_e_high - __pyx_v_e_low);
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1634
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1640
  *                 if gap_error == 0:
  *                     e_word_count = e_high - e_low
  *                     for i from 0 <= i < num_gaps: # check integrity of subphrases             # <<<<<<<<<<<<<<
@@ -54997,17 +55175,17 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_3 = __pyx_v_num_gaps;
         for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_3; __pyx_v_i++) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1635
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1641
  *                     e_word_count = e_high - e_low
  *                     for i from 0 <= i < num_gaps: # check integrity of subphrases
  *                         if self.find_fixpoint(f_gap_low[gap_start+i], f_gap_high[gap_start+i],             # <<<<<<<<<<<<<<
  *                                             f_links_low, f_links_high, e_links_low, e_links_high,
  *                                             -1, -1, e_gap_low+gap_start+i, e_gap_high+gap_start+i,
  */
-          __pyx_t_10 = PyInt_FromLong((__pyx_v_f_gap_high[(__pyx_v_gap_start + __pyx_v_i)])); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1635; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __pyx_t_10 = PyInt_FromLong((__pyx_v_f_gap_high[(__pyx_v_gap_start + __pyx_v_i)])); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1641; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
           __Pyx_GOTREF(__pyx_t_10);
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1640
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1646
  *                                             f_gap_low+gap_start+i, f_gap_high+gap_start+i,
  *                                             f_sent_len, e_sent_len,
  *                                             self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
@@ -55018,7 +55196,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
           if (__pyx_t_9) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1642
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1648
  *                                             self.train_max_initial_size, self.train_max_initial_size,
  *                                             0, 0, 0, 0, 0, 0, 0) == 0:
  *                             gap_error = 1             # <<<<<<<<<<<<<<
@@ -55027,18 +55205,18 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_gap_error = 1;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1643
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1649
  *                                             0, 0, 0, 0, 0, 0, 0) == 0:
  *                             gap_error = 1
  *                             reason_for_failure = "Subphrase [%d, %d] failed integrity check" % (f_gap_low[gap_start+i], f_gap_high[gap_start+i])             # <<<<<<<<<<<<<<
  *                             break
  * 
  */
-            __pyx_t_10 = PyInt_FromLong((__pyx_v_f_gap_low[(__pyx_v_gap_start + __pyx_v_i)])); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1643; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_10 = PyInt_FromLong((__pyx_v_f_gap_low[(__pyx_v_gap_start + __pyx_v_i)])); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1649; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_10);
-            __pyx_t_1 = PyInt_FromLong((__pyx_v_f_gap_high[(__pyx_v_gap_start + __pyx_v_i)])); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1643; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_1 = PyInt_FromLong((__pyx_v_f_gap_high[(__pyx_v_gap_start + __pyx_v_i)])); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1649; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_1);
-            __pyx_t_2 = PyTuple_New(2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1643; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_2 = PyTuple_New(2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1649; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_2);
             PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_10);
             __Pyx_GIVEREF(__pyx_t_10);
@@ -55046,14 +55224,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __Pyx_GIVEREF(__pyx_t_1);
             __pyx_t_10 = 0;
             __pyx_t_1 = 0;
-            __pyx_t_1 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_131), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1643; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_1 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_132), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1649; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(((PyObject *)__pyx_t_1));
             __Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
             __Pyx_DECREF(__pyx_v_reason_for_failure);
             __pyx_v_reason_for_failure = ((PyObject *)__pyx_t_1);
             __pyx_t_1 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1644
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1650
  *                             gap_error = 1
  *                             reason_for_failure = "Subphrase [%d, %d] failed integrity check" % (f_gap_low[gap_start+i], f_gap_high[gap_start+i])
  *                             break             # <<<<<<<<<<<<<<
@@ -55070,7 +55248,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       }
       __pyx_L47:;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1646
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1652
  *                             break
  * 
  *                 if gap_error == 0:             # <<<<<<<<<<<<<<
@@ -55080,7 +55258,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
       __pyx_t_9 = (__pyx_v_gap_error == 0);
       if (__pyx_t_9) {
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1647
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1653
  * 
  *                 if gap_error == 0:
  *                     i = 1             # <<<<<<<<<<<<<<
@@ -55089,21 +55267,21 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         __pyx_v_i = 1;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1648
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1654
  *                 if gap_error == 0:
  *                     i = 1
  *                     self.findexes.reset()             # <<<<<<<<<<<<<<
  *                     if f_back_low < f_low:
  *                         fphr_arr._append(sym_setindex(self.category, i))
  */
-        __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1648; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1654; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_1);
-        __pyx_t_2 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1648; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_2 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1654; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_2);
         __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
         __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1649
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1655
  *                     i = 1
  *                     self.findexes.reset()
  *                     if f_back_low < f_low:             # <<<<<<<<<<<<<<
@@ -55113,7 +55291,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_9 = (__pyx_v_f_back_low < __pyx_v_f_low);
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1650
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1656
  *                     self.findexes.reset()
  *                     if f_back_low < f_low:
  *                         fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -55122,7 +55300,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
           ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1651
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1657
  *                     if f_back_low < f_low:
  *                         fphr_arr._append(sym_setindex(self.category, i))
  *                         i = i+1             # <<<<<<<<<<<<<<
@@ -55131,16 +55309,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
           __pyx_v_i = (__pyx_v_i + 1);
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1652
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1658
  *                         fphr_arr._append(sym_setindex(self.category, i))
  *                         i = i+1
  *                         self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  *                     self.findexes.extend(self.findexes1)
  *                     for j from 0 <= j < phrase.n:
  */
-          __pyx_t_2 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1652; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __pyx_t_2 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1658; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
           __Pyx_GOTREF(__pyx_t_2);
-          __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1652; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_2); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1658; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
           __Pyx_GOTREF(__pyx_t_1);
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
           __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
@@ -55148,27 +55326,27 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         __pyx_L52:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1653
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1659
  *                         i = i+1
  *                         self.findexes.append(sym_setindex(self.category, i))
  *                     self.findexes.extend(self.findexes1)             # <<<<<<<<<<<<<<
  *                     for j from 0 <= j < phrase.n:
  *                         if sym_isvar(phrase.syms[j]):
  */
-        __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1653; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1659; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_1);
-        __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1653; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1659; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_2);
         __Pyx_INCREF(((PyObject *)__pyx_v_self->findexes1));
         PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_v_self->findexes1));
         __Pyx_GIVEREF(((PyObject *)__pyx_v_self->findexes1));
-        __pyx_t_10 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1653; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_10 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1659; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_10);
         __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
         __Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
         __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1654
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1660
  *                         self.findexes.append(sym_setindex(self.category, i))
  *                     self.findexes.extend(self.findexes1)
  *                     for j from 0 <= j < phrase.n:             # <<<<<<<<<<<<<<
@@ -55178,7 +55356,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_3 = __pyx_v_phrase->n;
         for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_3; __pyx_v_j++) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1655
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1661
  *                     self.findexes.extend(self.findexes1)
  *                     for j from 0 <= j < phrase.n:
  *                         if sym_isvar(phrase.syms[j]):             # <<<<<<<<<<<<<<
@@ -55188,7 +55366,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           __pyx_t_4 = __pyx_f_3_sa_sym_isvar((__pyx_v_phrase->syms[__pyx_v_j]));
           if (__pyx_t_4) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1656
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1662
  *                     for j from 0 <= j < phrase.n:
  *                         if sym_isvar(phrase.syms[j]):
  *                             fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -55197,7 +55375,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1657
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1663
  *                         if sym_isvar(phrase.syms[j]):
  *                             fphr_arr._append(sym_setindex(self.category, i))
  *                             i = i + 1             # <<<<<<<<<<<<<<
@@ -55209,7 +55387,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           }
           /*else*/ {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1659
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1665
  *                             i = i + 1
  *                         else:
  *                             fphr_arr._append(phrase.syms[j])             # <<<<<<<<<<<<<<
@@ -55221,7 +55399,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           __pyx_L55:;
         }
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1660
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1666
  *                         else:
  *                             fphr_arr._append(phrase.syms[j])
  *                     if f_back_high > f_high:             # <<<<<<<<<<<<<<
@@ -55231,7 +55409,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_9 = (__pyx_v_f_back_high > __pyx_v_f_high);
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1661
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1667
  *                             fphr_arr._append(phrase.syms[j])
  *                     if f_back_high > f_high:
  *                         fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -55240,16 +55418,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
           ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1662
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1668
  *                     if f_back_high > f_high:
  *                         fphr_arr._append(sym_setindex(self.category, i))
  *                         self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  * 
  *                     fphr = Phrase(fphr_arr)
  */
-          __pyx_t_10 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1662; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __pyx_t_10 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1668; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
           __Pyx_GOTREF(__pyx_t_10);
-          __pyx_t_2 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_10); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1662; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __pyx_t_2 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_10); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1668; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
           __Pyx_GOTREF(__pyx_t_2);
           __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
           __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
@@ -55257,25 +55435,25 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         __pyx_L56:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1664
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1670
  *                         self.findexes.append(sym_setindex(self.category, i))
  * 
  *                     fphr = Phrase(fphr_arr)             # <<<<<<<<<<<<<<
  *                     if met_constraints:
  *                         phrase_list = self.extract_phrases(e_low, e_high, e_gap_low + gap_start, e_gap_high + gap_start, e_links_low, num_gaps,
  */
-        __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1664; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1670; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_2);
         __Pyx_INCREF(((PyObject *)__pyx_v_fphr_arr));
         PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_v_fphr_arr));
         __Pyx_GIVEREF(((PyObject *)__pyx_v_fphr_arr));
-        __pyx_t_10 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1664; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_10 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1670; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_10);
         __Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
         __pyx_v_fphr = ((struct __pyx_obj_3_sa_Phrase *)__pyx_t_10);
         __pyx_t_10 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1665
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1671
  * 
  *                     fphr = Phrase(fphr_arr)
  *                     if met_constraints:             # <<<<<<<<<<<<<<
@@ -55284,47 +55462,47 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
         if (__pyx_v_met_constraints) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1668
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1674
  *                         phrase_list = self.extract_phrases(e_low, e_high, e_gap_low + gap_start, e_gap_high + gap_start, e_links_low, num_gaps,
  *                                             f_back_low, f_back_high, f_gap_low + gap_start, f_gap_high + gap_start, f_links_low,
  *                                             matching.sent_id, e_sent_len, e_sent_start)             # <<<<<<<<<<<<<<
  *                         if len(phrase_list) > 0:
  *                             pair_count = 1.0 / len(phrase_list)
  */
-          __pyx_t_10 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_low, __pyx_v_e_high, (__pyx_v_e_gap_low + __pyx_v_gap_start), (__pyx_v_e_gap_high + __pyx_v_gap_start), __pyx_v_e_links_low, __pyx_v_num_gaps, __pyx_v_f_back_low, __pyx_v_f_back_high, (__pyx_v_f_gap_low + __pyx_v_gap_start), (__pyx_v_f_gap_high + __pyx_v_gap_start), __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1666; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __pyx_t_10 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_low, __pyx_v_e_high, (__pyx_v_e_gap_low + __pyx_v_gap_start), (__pyx_v_e_gap_high + __pyx_v_gap_start), __pyx_v_e_links_low, __pyx_v_num_gaps, __pyx_v_f_back_low, __pyx_v_f_back_high, (__pyx_v_f_gap_low + __pyx_v_gap_start), (__pyx_v_f_gap_high + __pyx_v_gap_start), __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1672; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
           __Pyx_GOTREF(__pyx_t_10);
           __pyx_v_phrase_list = __pyx_t_10;
           __pyx_t_10 = 0;
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1669
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1675
  *                                             f_back_low, f_back_high, f_gap_low + gap_start, f_gap_high + gap_start, f_links_low,
  *                                             matching.sent_id, e_sent_len, e_sent_start)
  *                         if len(phrase_list) > 0:             # <<<<<<<<<<<<<<
  *                             pair_count = 1.0 / len(phrase_list)
  *                         else:
  */
-          __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1669; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+          __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1675; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
           __pyx_t_9 = (__pyx_t_13 > 0);
           if (__pyx_t_9) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1670
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1676
  *                                             matching.sent_id, e_sent_len, e_sent_start)
  *                         if len(phrase_list) > 0:
  *                             pair_count = 1.0 / len(phrase_list)             # <<<<<<<<<<<<<<
  *                         else:
  *                             pair_count = 0
  */
-            __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1670; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1676; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             if (unlikely(__pyx_t_13 == 0)) {
               PyErr_Format(PyExc_ZeroDivisionError, "float division");
-              {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1670; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1676; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             }
             __pyx_v_pair_count = (1.0 / __pyx_t_13);
             goto __pyx_L58;
           }
           /*else*/ {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1672
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1678
  *                             pair_count = 1.0 / len(phrase_list)
  *                         else:
  *                             pair_count = 0             # <<<<<<<<<<<<<<
@@ -55333,22 +55511,22 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_pair_count = 0.0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1673
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1679
  *                         else:
  *                             pair_count = 0
  *                             reason_for_failure = "Didn't extract anything from [%d, %d] -> [%d, %d]" % (f_back_low, f_back_high, e_low, e_high)             # <<<<<<<<<<<<<<
  *                         for (phrase2,eindexes) in phrase_list:
  *                             als1 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)
  */
-            __pyx_t_10 = PyInt_FromLong(__pyx_v_f_back_low); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1673; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_10 = PyInt_FromLong(__pyx_v_f_back_low); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1679; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_10);
-            __pyx_t_2 = PyInt_FromLong(__pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1673; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_2 = PyInt_FromLong(__pyx_v_f_back_high); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1679; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_2);
-            __pyx_t_1 = PyInt_FromLong(__pyx_v_e_low); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1673; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_1 = PyInt_FromLong(__pyx_v_e_low); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1679; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_1);
-            __pyx_t_14 = PyInt_FromLong(__pyx_v_e_high); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1673; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_14 = PyInt_FromLong(__pyx_v_e_high); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1679; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_14);
-            __pyx_t_15 = PyTuple_New(4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1673; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_15 = PyTuple_New(4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1679; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_15);
             PyTuple_SET_ITEM(__pyx_t_15, 0, __pyx_t_10);
             __Pyx_GIVEREF(__pyx_t_10);
@@ -55362,7 +55540,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __pyx_t_2 = 0;
             __pyx_t_1 = 0;
             __pyx_t_14 = 0;
-            __pyx_t_14 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_132), ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1673; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_14 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_133), ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1679; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(((PyObject *)__pyx_t_14));
             __Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
             __Pyx_DECREF(__pyx_v_reason_for_failure);
@@ -55371,7 +55549,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           }
           __pyx_L58:;
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1674
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1680
  *                             pair_count = 0
  *                             reason_for_failure = "Didn't extract anything from [%d, %d] -> [%d, %d]" % (f_back_low, f_back_high, e_low, e_high)
  *                         for (phrase2,eindexes) in phrase_list:             # <<<<<<<<<<<<<<
@@ -55382,31 +55560,23 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __pyx_t_14 = __pyx_v_phrase_list; __Pyx_INCREF(__pyx_t_14); __pyx_t_13 = 0;
             __pyx_t_16 = NULL;
           } else {
-            __pyx_t_13 = -1; __pyx_t_14 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_13 = -1; __pyx_t_14 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_14);
             __pyx_t_16 = Py_TYPE(__pyx_t_14)->tp_iternext;
           }
           for (;;) {
             if (!__pyx_t_16 && PyList_CheckExact(__pyx_t_14)) {
               if (__pyx_t_13 >= PyList_GET_SIZE(__pyx_t_14)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_15 = PyList_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              #else
-              __pyx_t_15 = PySequence_ITEM(__pyx_t_14, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              #endif
+              __pyx_t_15 = PyList_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++;
             } else if (!__pyx_t_16 && PyTuple_CheckExact(__pyx_t_14)) {
               if (__pyx_t_13 >= PyTuple_GET_SIZE(__pyx_t_14)) break;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              __pyx_t_15 = PyTuple_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              #else
-              __pyx_t_15 = PySequence_ITEM(__pyx_t_14, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              #endif
+              __pyx_t_15 = PyTuple_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++;
             } else {
               __pyx_t_15 = __pyx_t_16(__pyx_t_14);
               if (unlikely(!__pyx_t_15)) {
                 if (PyErr_Occurred()) {
                   if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) PyErr_Clear();
-                  else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 }
                 break;
               }
@@ -55414,35 +55584,29 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             if ((likely(PyTuple_CheckExact(__pyx_t_15))) || (PyList_CheckExact(__pyx_t_15))) {
               PyObject* sequence = __pyx_t_15;
-              #if CYTHON_COMPILING_IN_CPYTHON
-              Py_ssize_t size = Py_SIZE(sequence);
-              #else
-              Py_ssize_t size = PySequence_Size(sequence);
-              #endif
-              if (unlikely(size != 2)) {
-                if (size > 2) __Pyx_RaiseTooManyValuesError(2);
-                else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
-                {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              }
-              #if CYTHON_COMPILING_IN_CPYTHON
               if (likely(PyTuple_CheckExact(sequence))) {
+                if (unlikely(PyTuple_GET_SIZE(sequence) != 2)) {
+                  if (PyTuple_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                  else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                }
                 __pyx_t_1 = PyTuple_GET_ITEM(sequence, 0); 
                 __pyx_t_2 = PyTuple_GET_ITEM(sequence, 1); 
               } else {
+                if (unlikely(PyList_GET_SIZE(sequence) != 2)) {
+                  if (PyList_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                  else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                }
                 __pyx_t_1 = PyList_GET_ITEM(sequence, 0); 
                 __pyx_t_2 = PyList_GET_ITEM(sequence, 1); 
               }
               __Pyx_INCREF(__pyx_t_1);
               __Pyx_INCREF(__pyx_t_2);
-              #else
-              __pyx_t_1 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              __pyx_t_2 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              #endif
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
-            } else
-            {
+            } else {
               Py_ssize_t index = -1;
-              __pyx_t_10 = PyObject_GetIter(__pyx_t_15); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_10 = PyObject_GetIter(__pyx_t_15); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_10);
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
               __pyx_t_17 = Py_TYPE(__pyx_t_10)->tp_iternext;
@@ -55450,15 +55614,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               __Pyx_GOTREF(__pyx_t_1);
               index = 1; __pyx_t_2 = __pyx_t_17(__pyx_t_10); if (unlikely(!__pyx_t_2)) goto __pyx_L61_unpacking_failed;
               __Pyx_GOTREF(__pyx_t_2);
-              if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-              __pyx_t_17 = NULL;
+              if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
               goto __pyx_L62_unpacking_done;
               __pyx_L61_unpacking_failed:;
               __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
-              __pyx_t_17 = NULL;
-              if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
-              {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1674; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              if (PyErr_Occurred() && PyErr_ExceptionMatches(PyExc_StopIteration)) PyErr_Clear();
+              if (!PyErr_Occurred()) __Pyx_RaiseNeedMoreValuesError(index);
+              {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1680; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __pyx_L62_unpacking_done:;
             }
             __Pyx_XDECREF(__pyx_v_phrase2);
@@ -55468,40 +55631,40 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __pyx_v_eindexes = __pyx_t_2;
             __pyx_t_2 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1675
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1681
  *                             reason_for_failure = "Didn't extract anything from [%d, %d] -> [%d, %d]" % (f_back_low, f_back_high, e_low, e_high)
  *                         for (phrase2,eindexes) in phrase_list:
  *                             als1 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)             # <<<<<<<<<<<<<<
  *                             extracts.append((fphr, phrase2, pair_count, tuple(als1)))
- * 
+ *                     if (num_gaps < self.max_nonterminals and
  */
             __pyx_t_15 = ((PyObject *)__pyx_v_self->findexes);
             __Pyx_INCREF(__pyx_t_15);
-            __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_15, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1675; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_15, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1681; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_2);
             __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
             __Pyx_XDECREF(((PyObject *)__pyx_v_als1));
             __pyx_v_als1 = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_2);
             __pyx_t_2 = 0;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1676
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1682
  *                         for (phrase2,eindexes) in phrase_list:
  *                             als1 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)
  *                             extracts.append((fphr, phrase2, pair_count, tuple(als1)))             # <<<<<<<<<<<<<<
- * 
  *                     if (num_gaps < self.max_nonterminals and
+ *                         phrase_len < self.max_length and
  */
-            __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1676; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1682; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_2);
-            __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1676; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1682; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_15);
             __Pyx_INCREF(((PyObject *)__pyx_v_als1));
             PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_v_als1));
             __Pyx_GIVEREF(((PyObject *)__pyx_v_als1));
-            __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1676; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1682; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_1);
             __Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
-            __pyx_t_15 = PyTuple_New(4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1676; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_15 = PyTuple_New(4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1682; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_15);
             __Pyx_INCREF(((PyObject *)__pyx_v_fphr));
             PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_v_fphr));
@@ -55515,7 +55678,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __Pyx_GIVEREF(__pyx_t_1);
             __pyx_t_2 = 0;
             __pyx_t_1 = 0;
-            __pyx_t_1 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1676; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            __pyx_t_1 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1682; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
             __Pyx_GOTREF(__pyx_t_1);
             __Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
             __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
@@ -55525,9 +55688,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         __pyx_L57:;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1678
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1683
+ *                             als1 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)
  *                             extracts.append((fphr, phrase2, pair_count, tuple(als1)))
- * 
  *                     if (num_gaps < self.max_nonterminals and             # <<<<<<<<<<<<<<
  *                         phrase_len < self.max_length and
  *                         f_back_high - f_back_low + self.train_min_gap_size <= self.train_max_initial_size):
@@ -55535,8 +55698,8 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         __pyx_t_9 = (__pyx_v_num_gaps < __pyx_v_self->max_nonterminals);
         if (__pyx_t_9) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1679
- * 
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1684
+ *                             extracts.append((fphr, phrase2, pair_count, tuple(als1)))
  *                     if (num_gaps < self.max_nonterminals and
  *                         phrase_len < self.max_length and             # <<<<<<<<<<<<<<
  *                         f_back_high - f_back_low + self.train_min_gap_size <= self.train_max_initial_size):
@@ -55545,7 +55708,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           __pyx_t_7 = (__pyx_v_phrase_len < __pyx_v_self->max_length);
           if (__pyx_t_7) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1680
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1685
  *                     if (num_gaps < self.max_nonterminals and
  *                         phrase_len < self.max_length and
  *                         f_back_high - f_back_low + self.train_min_gap_size <= self.train_max_initial_size):             # <<<<<<<<<<<<<<
@@ -55563,7 +55726,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
         }
         if (__pyx_t_7) {
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1681
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1686
  *                         phrase_len < self.max_length and
  *                         f_back_high - f_back_low + self.train_min_gap_size <= self.train_max_initial_size):
  *                         if (f_back_low == f_low and             # <<<<<<<<<<<<<<
@@ -55573,7 +55736,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           __pyx_t_7 = (__pyx_v_f_back_low == __pyx_v_f_low);
           if (__pyx_t_7) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1682
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1687
  *                         f_back_high - f_back_low + self.train_min_gap_size <= self.train_max_initial_size):
  *                         if (f_back_low == f_low and
  *                                 f_low >= self.train_min_gap_size and             # <<<<<<<<<<<<<<
@@ -55583,7 +55746,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __pyx_t_9 = (__pyx_v_f_low >= __pyx_v_self->train_min_gap_size);
             if (__pyx_t_9) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1683
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1688
  *                         if (f_back_low == f_low and
  *                                 f_low >= self.train_min_gap_size and
  *                                 ((not self.tight_phrases) or (f_links_low[f_low-1] != -1 and f_links_low[f_back_high-1] != -1))):             # <<<<<<<<<<<<<<
@@ -55613,7 +55776,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           }
           if (__pyx_t_9) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1684
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1689
  *                                 f_low >= self.train_min_gap_size and
  *                                 ((not self.tight_phrases) or (f_links_low[f_low-1] != -1 and f_links_low[f_back_high-1] != -1))):
  *                             f_x_low = f_low-self.train_min_gap_size             # <<<<<<<<<<<<<<
@@ -55622,7 +55785,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_f_x_low = (__pyx_v_f_low - __pyx_v_self->train_min_gap_size);
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1685
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1690
  *                                 ((not self.tight_phrases) or (f_links_low[f_low-1] != -1 and f_links_low[f_back_high-1] != -1))):
  *                             f_x_low = f_low-self.train_min_gap_size
  *                             met_constraints = 1             # <<<<<<<<<<<<<<
@@ -55631,7 +55794,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_met_constraints = 1;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1686
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1691
  *                             f_x_low = f_low-self.train_min_gap_size
  *                             met_constraints = 1
  *                             if self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -55640,7 +55803,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             if (__pyx_v_self->tight_phrases) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1687
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1692
  *                             met_constraints = 1
  *                             if self.tight_phrases:
  *                                 while f_x_low >= 0 and f_links_low[f_x_low] == -1:             # <<<<<<<<<<<<<<
@@ -55657,7 +55820,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 }
                 if (!__pyx_t_18) break;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1688
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1693
  *                             if self.tight_phrases:
  *                                 while f_x_low >= 0 and f_links_low[f_x_low] == -1:
  *                                     f_x_low = f_x_low - 1             # <<<<<<<<<<<<<<
@@ -55670,7 +55833,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L65:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1689
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1694
  *                                 while f_x_low >= 0 and f_links_low[f_x_low] == -1:
  *                                     f_x_low = f_x_low - 1
  *                             if f_x_low < 0 or f_back_high - f_x_low > self.train_max_initial_size:             # <<<<<<<<<<<<<<
@@ -55686,7 +55849,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             if (__pyx_t_7) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1690
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1695
  *                                     f_x_low = f_x_low - 1
  *                             if f_x_low < 0 or f_back_high - f_x_low > self.train_max_initial_size:
  *                                 met_constraints = 0             # <<<<<<<<<<<<<<
@@ -55698,85 +55861,85 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L68:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1692
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1697
  *                                 met_constraints = 0
  * 
  *                             if (met_constraints and             # <<<<<<<<<<<<<<
- *                                 self.find_fixpoint(f_x_low, f_back_high,
+ *                                 (self.find_fixpoint(f_x_low, f_back_high,
  *                                             f_links_low, f_links_high, e_links_low, e_links_high,
  */
             if (__pyx_v_met_constraints) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1693
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1698
  * 
  *                             if (met_constraints and
- *                                 self.find_fixpoint(f_x_low, f_back_high,             # <<<<<<<<<<<<<<
+ *                                 (self.find_fixpoint(f_x_low, f_back_high,             # <<<<<<<<<<<<<<
  *                                             f_links_low, f_links_high, e_links_low, e_links_high,
  *                                             e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high,
  */
-              __pyx_t_14 = PyInt_FromLong(__pyx_v_f_back_high); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1693; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyInt_FromLong(__pyx_v_f_back_high); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1698; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1697
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1702
  *                                             e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high,
  *                                             f_sent_len, e_sent_len,
  *                                             self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
- *                                             1, 1, 1, 1, 0, 1, 0) and
+ *                                             1, 1, 1, 1, 0, 1, 0) == 1) and
  *                                 ((not self.tight_phrases) or f_links_low[f_x_low] != -1) and
  */
-              if (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_14, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 1, 1, 0, 1, 0)) {
-                __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
+              __pyx_t_7 = (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_14, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 1, 1, 0, 1, 0) == 1);
+              __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
+              if (__pyx_t_7) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1699
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1704
  *                                             self.train_max_initial_size, self.train_max_initial_size,
- *                                             1, 1, 1, 1, 0, 1, 0) and
+ *                                             1, 1, 1, 1, 0, 1, 0) == 1) and
  *                                 ((not self.tight_phrases) or f_links_low[f_x_low] != -1) and             # <<<<<<<<<<<<<<
  *                                 self.find_fixpoint(f_x_low, f_low,    # check integrity of new subphrase
  *                                             f_links_low, f_links_high, e_links_low, e_links_high,
  */
-                __pyx_t_7 = (!__pyx_v_self->tight_phrases);
-                if (!__pyx_t_7) {
-                  __pyx_t_18 = ((__pyx_v_f_links_low[__pyx_v_f_x_low]) != -1);
-                  __pyx_t_9 = __pyx_t_18;
+                __pyx_t_18 = (!__pyx_v_self->tight_phrases);
+                if (!__pyx_t_18) {
+                  __pyx_t_9 = ((__pyx_v_f_links_low[__pyx_v_f_x_low]) != -1);
+                  __pyx_t_8 = __pyx_t_9;
                 } else {
-                  __pyx_t_9 = __pyx_t_7;
+                  __pyx_t_8 = __pyx_t_18;
                 }
-                if (__pyx_t_9) {
+                if (__pyx_t_8) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1700
- *                                             1, 1, 1, 1, 0, 1, 0) and
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1705
+ *                                             1, 1, 1, 1, 0, 1, 0) == 1) and
  *                                 ((not self.tight_phrases) or f_links_low[f_x_low] != -1) and
  *                                 self.find_fixpoint(f_x_low, f_low,    # check integrity of new subphrase             # <<<<<<<<<<<<<<
  *                                             f_links_low, f_links_high, e_links_low, e_links_high,
  *                                             -1, -1, e_gap_low, e_gap_high, f_gap_low, f_gap_high,
  */
-                  __pyx_t_1 = PyInt_FromLong(__pyx_v_f_low); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1700; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __Pyx_GOTREF(__pyx_t_1);
+                  __pyx_t_14 = PyInt_FromLong(__pyx_v_f_low); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1705; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __Pyx_GOTREF(__pyx_t_14);
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1704
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1709
  *                                             -1, -1, e_gap_low, e_gap_high, f_gap_low, f_gap_high,
  *                                             f_sent_len, e_sent_len,
  *                                             self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
  *                                             0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()
  */
-                  __pyx_t_7 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, -1, -1, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 0, 0, 0, 0, 0, 0, 0);
-                  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+                  __pyx_t_18 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_14, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, -1, -1, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 0, 0, 0, 0, 0, 0, 0);
+                  __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
                 } else {
-                  __pyx_t_7 = __pyx_t_9;
+                  __pyx_t_18 = __pyx_t_8;
                 }
-                __pyx_t_9 = __pyx_t_7;
+                __pyx_t_8 = __pyx_t_18;
               } else {
-                __pyx_t_9 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_14, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 1, 1, 0, 1, 0);
-                __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
+                __pyx_t_8 = __pyx_t_7;
               }
-              __pyx_t_7 = __pyx_t_9;
+              __pyx_t_7 = __pyx_t_8;
             } else {
               __pyx_t_7 = __pyx_v_met_constraints;
             }
             if (__pyx_t_7) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1706
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1711
  *                                             self.train_max_initial_size, self.train_max_initial_size,
  *                                             0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()             # <<<<<<<<<<<<<<
@@ -55785,7 +55948,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_clear(__pyx_v_fphr_arr);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1707
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1712
  *                                             0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()
  *                                 i = 1             # <<<<<<<<<<<<<<
@@ -55794,35 +55957,35 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               __pyx_v_i = 1;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1708
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1713
  *                                 fphr_arr._clear()
  *                                 i = 1
  *                                 self.findexes.reset()             # <<<<<<<<<<<<<<
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  */
-              __pyx_t_14 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1708; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1713; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
-              __pyx_t_1 = PyObject_Call(__pyx_t_14, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1708; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyObject_Call(__pyx_t_14, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1713; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
               __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
               __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1709
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1714
  *                                 i = 1
  *                                 self.findexes.reset()
  *                                 self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 i = i+1
  */
-              __pyx_t_1 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1709; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1714; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
-              __pyx_t_14 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1709; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1714; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
               __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1710
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1715
  *                                 self.findexes.reset()
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -55831,7 +55994,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1711
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1716
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 i = i+1             # <<<<<<<<<<<<<<
@@ -55840,27 +56003,27 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               __pyx_v_i = (__pyx_v_i + 1);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1712
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1717
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 i = i+1
  *                                 self.findexes.extend(self.findexes1)             # <<<<<<<<<<<<<<
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):
  */
-              __pyx_t_14 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1712; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1717; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
-              __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1712; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1717; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
               __Pyx_INCREF(((PyObject *)__pyx_v_self->findexes1));
               PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)__pyx_v_self->findexes1));
               __Pyx_GIVEREF(((PyObject *)__pyx_v_self->findexes1));
-              __pyx_t_15 = PyObject_Call(__pyx_t_14, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1712; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyObject_Call(__pyx_t_14, ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1717; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
               __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
               __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1713
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1718
  *                                 i = i+1
  *                                 self.findexes.extend(self.findexes1)
  *                                 for j from 0 <= j < phrase.n:             # <<<<<<<<<<<<<<
@@ -55870,7 +56033,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               __pyx_t_3 = __pyx_v_phrase->n;
               for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_3; __pyx_v_j++) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1714
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1719
  *                                 self.findexes.extend(self.findexes1)
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):             # <<<<<<<<<<<<<<
@@ -55880,7 +56043,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_t_4 = __pyx_f_3_sa_sym_isvar((__pyx_v_phrase->syms[__pyx_v_j]));
                 if (__pyx_t_4) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1715
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1720
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):
  *                                         fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -55889,7 +56052,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1716
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1721
  *                                     if sym_isvar(phrase.syms[j]):
  *                                         fphr_arr._append(sym_setindex(self.category, i))
  *                                         i = i + 1             # <<<<<<<<<<<<<<
@@ -55901,7 +56064,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 }
                 /*else*/ {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1718
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1723
  *                                         i = i + 1
  *                                     else:
  *                                         fphr_arr._append(phrase.syms[j])             # <<<<<<<<<<<<<<
@@ -55913,7 +56076,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_L72:;
               }
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1719
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1724
  *                                     else:
  *                                         fphr_arr._append(phrase.syms[j])
  *                                 if f_back_high > f_high:             # <<<<<<<<<<<<<<
@@ -55923,7 +56086,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               __pyx_t_7 = (__pyx_v_f_back_high > __pyx_v_f_high);
               if (__pyx_t_7) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1720
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1725
  *                                         fphr_arr._append(phrase.syms[j])
  *                                 if f_back_high > f_high:
  *                                     fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -55932,16 +56095,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                 ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1721
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1726
  *                                 if f_back_high > f_high:
  *                                     fphr_arr._append(sym_setindex(self.category, i))
  *                                     self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  *                                 fphr = Phrase(fphr_arr)
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+1,
  */
-                __pyx_t_15 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1721; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_15 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1726; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_15);
-                __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_15); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1721; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_15); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1726; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_1);
                 __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
                 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
@@ -55949,67 +56112,67 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               }
               __pyx_L73:;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1722
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1727
  *                                     fphr_arr._append(sym_setindex(self.category, i))
  *                                     self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr = Phrase(fphr_arr)             # <<<<<<<<<<<<<<
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+1,
  *                                                     f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low, matching.sent_id,
  */
-              __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1722; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1727; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
               __Pyx_INCREF(((PyObject *)__pyx_v_fphr_arr));
               PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)__pyx_v_fphr_arr));
               __Pyx_GIVEREF(((PyObject *)__pyx_v_fphr_arr));
-              __pyx_t_15 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1722; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1727; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
               __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
               __Pyx_DECREF(((PyObject *)__pyx_v_fphr));
               __pyx_v_fphr = ((struct __pyx_obj_3_sa_Phrase *)__pyx_t_15);
               __pyx_t_15 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1725
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1730
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+1,
  *                                                     f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low, matching.sent_id,
  *                                                     e_sent_len, e_sent_start)             # <<<<<<<<<<<<<<
  *                                 if len(phrase_list) > 0:
  *                                     pair_count = 1.0 / len(phrase_list)
  */
-              __pyx_t_15 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_x_low, __pyx_v_e_x_high, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_e_links_low, (__pyx_v_num_gaps + 1), __pyx_v_f_x_low, __pyx_v_f_x_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1723; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_x_low, __pyx_v_e_x_high, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_e_links_low, (__pyx_v_num_gaps + 1), __pyx_v_f_x_low, __pyx_v_f_x_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1728; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
               __Pyx_XDECREF(__pyx_v_phrase_list);
               __pyx_v_phrase_list = __pyx_t_15;
               __pyx_t_15 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1726
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1731
  *                                                     f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low, matching.sent_id,
  *                                                     e_sent_len, e_sent_start)
  *                                 if len(phrase_list) > 0:             # <<<<<<<<<<<<<<
  *                                     pair_count = 1.0 / len(phrase_list)
  *                                 else:
  */
-              __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1726; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1731; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __pyx_t_7 = (__pyx_t_13 > 0);
               if (__pyx_t_7) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1727
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1732
  *                                                     e_sent_len, e_sent_start)
  *                                 if len(phrase_list) > 0:
  *                                     pair_count = 1.0 / len(phrase_list)             # <<<<<<<<<<<<<<
  *                                 else:
  *                                     pair_count = 0
  */
-                __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1727; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1732; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 if (unlikely(__pyx_t_13 == 0)) {
                   PyErr_Format(PyExc_ZeroDivisionError, "float division");
-                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1727; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1732; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 }
                 __pyx_v_pair_count = (1.0 / __pyx_t_13);
                 goto __pyx_L74;
               }
               /*else*/ {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1729
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1734
  *                                     pair_count = 1.0 / len(phrase_list)
  *                                 else:
  *                                     pair_count = 0             # <<<<<<<<<<<<<<
@@ -56020,7 +56183,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               }
               __pyx_L74:;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1730
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1735
  *                                 else:
  *                                     pair_count = 0
  *                                 for phrase2,eindexes in phrase_list:             # <<<<<<<<<<<<<<
@@ -56031,31 +56194,23 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_t_15 = __pyx_v_phrase_list; __Pyx_INCREF(__pyx_t_15); __pyx_t_13 = 0;
                 __pyx_t_16 = NULL;
               } else {
-                __pyx_t_13 = -1; __pyx_t_15 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_13 = -1; __pyx_t_15 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_15);
                 __pyx_t_16 = Py_TYPE(__pyx_t_15)->tp_iternext;
               }
               for (;;) {
                 if (!__pyx_t_16 && PyList_CheckExact(__pyx_t_15)) {
                   if (__pyx_t_13 >= PyList_GET_SIZE(__pyx_t_15)) break;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  __pyx_t_1 = PyList_GET_ITEM(__pyx_t_15, __pyx_t_13); __Pyx_INCREF(__pyx_t_1); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #else
-                  __pyx_t_1 = PySequence_ITEM(__pyx_t_15, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
+                  __pyx_t_1 = PyList_GET_ITEM(__pyx_t_15, __pyx_t_13); __Pyx_INCREF(__pyx_t_1); __pyx_t_13++;
                 } else if (!__pyx_t_16 && PyTuple_CheckExact(__pyx_t_15)) {
                   if (__pyx_t_13 >= PyTuple_GET_SIZE(__pyx_t_15)) break;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_15, __pyx_t_13); __Pyx_INCREF(__pyx_t_1); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #else
-                  __pyx_t_1 = PySequence_ITEM(__pyx_t_15, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
+                  __pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_15, __pyx_t_13); __Pyx_INCREF(__pyx_t_1); __pyx_t_13++;
                 } else {
                   __pyx_t_1 = __pyx_t_16(__pyx_t_15);
                   if (unlikely(!__pyx_t_1)) {
                     if (PyErr_Occurred()) {
                       if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) PyErr_Clear();
-                      else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                      else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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                     break;
                   }
@@ -56063,35 +56218,29 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 }
                 if ((likely(PyTuple_CheckExact(__pyx_t_1))) || (PyList_CheckExact(__pyx_t_1))) {
                   PyObject* sequence = __pyx_t_1;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  Py_ssize_t size = Py_SIZE(sequence);
-                  #else
-                  Py_ssize_t size = PySequence_Size(sequence);
-                  #endif
-                  if (unlikely(size != 2)) {
-                    if (size > 2) __Pyx_RaiseTooManyValuesError(2);
-                    else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
-                    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  }
-                  #if CYTHON_COMPILING_IN_CPYTHON
                   if (likely(PyTuple_CheckExact(sequence))) {
+                    if (unlikely(PyTuple_GET_SIZE(sequence) != 2)) {
+                      if (PyTuple_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                      else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                      {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                    }
                     __pyx_t_14 = PyTuple_GET_ITEM(sequence, 0); 
                     __pyx_t_2 = PyTuple_GET_ITEM(sequence, 1); 
                   } else {
+                    if (unlikely(PyList_GET_SIZE(sequence) != 2)) {
+                      if (PyList_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                      else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                      {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                    }
                     __pyx_t_14 = PyList_GET_ITEM(sequence, 0); 
                     __pyx_t_2 = PyList_GET_ITEM(sequence, 1); 
                   }
                   __Pyx_INCREF(__pyx_t_14);
                   __Pyx_INCREF(__pyx_t_2);
-                  #else
-                  __pyx_t_14 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __pyx_t_2 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
                   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
-                } else
-                {
+                } else {
                   Py_ssize_t index = -1;
-                  __pyx_t_10 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __pyx_t_10 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __Pyx_GOTREF(__pyx_t_10);
                   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
                   __pyx_t_17 = Py_TYPE(__pyx_t_10)->tp_iternext;
@@ -56099,15 +56248,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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                   __Pyx_GOTREF(__pyx_t_2);
-                  if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __pyx_t_17 = NULL;
+                  if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
                   goto __pyx_L78_unpacking_done;
                   __pyx_L77_unpacking_failed:;
                   __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
-                  __pyx_t_17 = NULL;
-                  if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
-                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1730; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  if (PyErr_Occurred() && PyErr_ExceptionMatches(PyExc_StopIteration)) PyErr_Clear();
+                  if (!PyErr_Occurred()) __Pyx_RaiseNeedMoreValuesError(index);
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1735; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __pyx_L78_unpacking_done:;
                 }
                 __Pyx_XDECREF(__pyx_v_phrase2);
@@ -56117,7 +56265,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_v_eindexes = __pyx_t_2;
                 __pyx_t_2 = 0;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1731
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1736
  *                                     pair_count = 0
  *                                 for phrase2,eindexes in phrase_list:
  *                                     als2 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)             # <<<<<<<<<<<<<<
@@ -56126,31 +56274,31 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                 __pyx_t_1 = ((PyObject *)__pyx_v_self->findexes);
                 __Pyx_INCREF(__pyx_t_1);
-                __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_1, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1731; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_1, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1736; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_2);
                 __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
                 __Pyx_XDECREF(((PyObject *)__pyx_v_als2));
                 __pyx_v_als2 = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_2);
                 __pyx_t_2 = 0;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1732
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1737
  *                                 for phrase2,eindexes in phrase_list:
  *                                     als2 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)
  *                                     extracts.append((fphr, phrase2, pair_count, tuple(als2)))             # <<<<<<<<<<<<<<
  * 
  *                         if (f_back_high == f_high and
  */
-                __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1732; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1737; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_2);
-                __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1732; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1737; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_1);
                 __Pyx_INCREF(((PyObject *)__pyx_v_als2));
                 PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)__pyx_v_als2));
                 __Pyx_GIVEREF(((PyObject *)__pyx_v_als2));
-                __pyx_t_14 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1732; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_14 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_1), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1737; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_14);
                 __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
-                __pyx_t_1 = PyTuple_New(4); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1732; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_1 = PyTuple_New(4); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1737; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_1);
                 __Pyx_INCREF(((PyObject *)__pyx_v_fphr));
                 PyTuple_SET_ITEM(__pyx_t_1, 0, ((PyObject *)__pyx_v_fphr));
@@ -56164,7 +56312,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __Pyx_GIVEREF(__pyx_t_14);
                 __pyx_t_2 = 0;
                 __pyx_t_14 = 0;
-                __pyx_t_14 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_1)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1732; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_14 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_1)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1737; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_14);
                 __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0;
                 __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
@@ -56177,7 +56325,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           }
           __pyx_L64:;
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1734
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1739
  *                                     extracts.append((fphr, phrase2, pair_count, tuple(als2)))
  * 
  *                         if (f_back_high == f_high and             # <<<<<<<<<<<<<<
@@ -56187,17 +56335,17 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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           if (__pyx_t_7) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1735
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1740
  * 
  *                         if (f_back_high == f_high and
  *                             f_sent_len - f_high >= self.train_min_gap_size and             # <<<<<<<<<<<<<<
  *                             ((not self.tight_phrases) or (f_links_low[f_high] != -1 and f_links_low[f_back_low] != -1))):
  *                             f_x_high = f_high+self.train_min_gap_size
  */
-            __pyx_t_9 = ((__pyx_v_f_sent_len - __pyx_v_f_high) >= __pyx_v_self->train_min_gap_size);
-            if (__pyx_t_9) {
+            __pyx_t_8 = ((__pyx_v_f_sent_len - __pyx_v_f_high) >= __pyx_v_self->train_min_gap_size);
+            if (__pyx_t_8) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1736
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1741
  *                         if (f_back_high == f_high and
  *                             f_sent_len - f_high >= self.train_min_gap_size and
  *                             ((not self.tight_phrases) or (f_links_low[f_high] != -1 and f_links_low[f_back_low] != -1))):             # <<<<<<<<<<<<<<
@@ -56206,28 +56354,28 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               __pyx_t_18 = (!__pyx_v_self->tight_phrases);
               if (!__pyx_t_18) {
-                __pyx_t_8 = ((__pyx_v_f_links_low[__pyx_v_f_high]) != -1);
-                if (__pyx_t_8) {
+                __pyx_t_9 = ((__pyx_v_f_links_low[__pyx_v_f_high]) != -1);
+                if (__pyx_t_9) {
                   __pyx_t_20 = ((__pyx_v_f_links_low[__pyx_v_f_back_low]) != -1);
                   __pyx_t_19 = __pyx_t_20;
                 } else {
-                  __pyx_t_19 = __pyx_t_8;
+                  __pyx_t_19 = __pyx_t_9;
                 }
-                __pyx_t_8 = __pyx_t_19;
+                __pyx_t_9 = __pyx_t_19;
               } else {
-                __pyx_t_8 = __pyx_t_18;
+                __pyx_t_9 = __pyx_t_18;
               }
-              __pyx_t_18 = __pyx_t_8;
-            } else {
               __pyx_t_18 = __pyx_t_9;
+            } else {
+              __pyx_t_18 = __pyx_t_8;
             }
-            __pyx_t_9 = __pyx_t_18;
+            __pyx_t_8 = __pyx_t_18;
           } else {
-            __pyx_t_9 = __pyx_t_7;
+            __pyx_t_8 = __pyx_t_7;
           }
-          if (__pyx_t_9) {
+          if (__pyx_t_8) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1737
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1742
  *                             f_sent_len - f_high >= self.train_min_gap_size and
  *                             ((not self.tight_phrases) or (f_links_low[f_high] != -1 and f_links_low[f_back_low] != -1))):
  *                             f_x_high = f_high+self.train_min_gap_size             # <<<<<<<<<<<<<<
@@ -56236,7 +56384,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_f_x_high = (__pyx_v_f_high + __pyx_v_self->train_min_gap_size);
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1738
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1743
  *                             ((not self.tight_phrases) or (f_links_low[f_high] != -1 and f_links_low[f_back_low] != -1))):
  *                             f_x_high = f_high+self.train_min_gap_size
  *                             met_constraints = 1             # <<<<<<<<<<<<<<
@@ -56245,7 +56393,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_met_constraints = 1;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1739
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1744
  *                             f_x_high = f_high+self.train_min_gap_size
  *                             met_constraints = 1
  *                             if self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -56254,7 +56402,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             if (__pyx_v_self->tight_phrases) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1740
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1745
  *                             met_constraints = 1
  *                             if self.tight_phrases:
  *                                 while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1:             # <<<<<<<<<<<<<<
@@ -56262,16 +56410,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  *                             if f_x_high > f_sent_len or f_x_high - f_back_low > self.train_max_initial_size:
  */
               while (1) {
-                __pyx_t_9 = (__pyx_v_f_x_high <= __pyx_v_f_sent_len);
-                if (__pyx_t_9) {
+                __pyx_t_8 = (__pyx_v_f_x_high <= __pyx_v_f_sent_len);
+                if (__pyx_t_8) {
                   __pyx_t_7 = ((__pyx_v_f_links_low[(__pyx_v_f_x_high - 1)]) == -1);
                   __pyx_t_18 = __pyx_t_7;
                 } else {
-                  __pyx_t_18 = __pyx_t_9;
+                  __pyx_t_18 = __pyx_t_8;
                 }
                 if (!__pyx_t_18) break;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1741
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1746
  *                             if self.tight_phrases:
  *                                 while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1:
  *                                     f_x_high = f_x_high + 1             # <<<<<<<<<<<<<<
@@ -56284,7 +56432,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L80:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1742
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1747
  *                                 while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1:
  *                                     f_x_high = f_x_high + 1
  *                             if f_x_high > f_sent_len or f_x_high - f_back_low > self.train_max_initial_size:             # <<<<<<<<<<<<<<
@@ -56293,14 +56441,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_t_18 = (__pyx_v_f_x_high > __pyx_v_f_sent_len);
             if (!__pyx_t_18) {
-              __pyx_t_9 = ((__pyx_v_f_x_high - __pyx_v_f_back_low) > __pyx_v_self->train_max_initial_size);
-              __pyx_t_7 = __pyx_t_9;
+              __pyx_t_8 = ((__pyx_v_f_x_high - __pyx_v_f_back_low) > __pyx_v_self->train_max_initial_size);
+              __pyx_t_7 = __pyx_t_8;
             } else {
               __pyx_t_7 = __pyx_t_18;
             }
             if (__pyx_t_7) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1743
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1748
  *                                     f_x_high = f_x_high + 1
  *                             if f_x_high > f_sent_len or f_x_high - f_back_low > self.train_max_initial_size:
  *                                 met_constraints = 0             # <<<<<<<<<<<<<<
@@ -56312,7 +56460,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L83:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1745
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1750
  *                                 met_constraints = 0
  * 
  *                             if (met_constraints and             # <<<<<<<<<<<<<<
@@ -56321,17 +56469,17 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             if (__pyx_v_met_constraints) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1746
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1751
  * 
  *                             if (met_constraints and
  *                                 self.find_fixpoint(f_back_low, f_x_high,             # <<<<<<<<<<<<<<
  *                                             f_links_low, f_links_high, e_links_low, e_links_high,
  *                                             e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high,
  */
-              __pyx_t_15 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1746; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1751; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1750
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1755
  *                                             e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high,
  *                                             f_sent_len, e_sent_len,
  *                                             self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
@@ -56341,7 +56489,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               if (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_back_low, __pyx_t_15, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 1, 0, 1, 1, 0)) {
                 __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1752
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1757
  *                                             self.train_max_initial_size, self.train_max_initial_size,
  *                                             1, 1, 1, 0, 1, 1, 0) and
  *                                 ((not self.tight_phrases) or f_links_low[f_x_high-1] != -1) and             # <<<<<<<<<<<<<<
@@ -56351,23 +56499,23 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_t_7 = (!__pyx_v_self->tight_phrases);
                 if (!__pyx_t_7) {
                   __pyx_t_18 = ((__pyx_v_f_links_low[(__pyx_v_f_x_high - 1)]) != -1);
-                  __pyx_t_9 = __pyx_t_18;
+                  __pyx_t_8 = __pyx_t_18;
                 } else {
-                  __pyx_t_9 = __pyx_t_7;
+                  __pyx_t_8 = __pyx_t_7;
                 }
-                if (__pyx_t_9) {
+                if (__pyx_t_8) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1753
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1758
  *                                             1, 1, 1, 0, 1, 1, 0) and
  *                                 ((not self.tight_phrases) or f_links_low[f_x_high-1] != -1) and
  *                                 self.find_fixpoint(f_high, f_x_high,             # <<<<<<<<<<<<<<
  *                                             f_links_low, f_links_high, e_links_low, e_links_high,
  *                                             -1, -1, e_gap_low+gap_start+num_gaps, e_gap_high+gap_start+num_gaps,
  */
-                  __pyx_t_14 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1753; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __pyx_t_14 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1758; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __Pyx_GOTREF(__pyx_t_14);
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1758
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1763
  *                                             f_gap_low+gap_start+num_gaps, f_gap_high+gap_start+num_gaps,
  *                                             f_sent_len, e_sent_len,
  *                                             self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
@@ -56377,20 +56525,20 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                   __pyx_t_7 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_high, __pyx_t_14, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, -1, -1, ((__pyx_v_e_gap_low + __pyx_v_gap_start) + __pyx_v_num_gaps), ((__pyx_v_e_gap_high + __pyx_v_gap_start) + __pyx_v_num_gaps), ((__pyx_v_f_gap_low + __pyx_v_gap_start) + __pyx_v_num_gaps), ((__pyx_v_f_gap_high + __pyx_v_gap_start) + __pyx_v_num_gaps), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 0, 0, 0, 0, 0, 0, 0);
                   __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
                 } else {
-                  __pyx_t_7 = __pyx_t_9;
+                  __pyx_t_7 = __pyx_t_8;
                 }
-                __pyx_t_9 = __pyx_t_7;
+                __pyx_t_8 = __pyx_t_7;
               } else {
-                __pyx_t_9 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_back_low, __pyx_t_15, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 1, 0, 1, 1, 0);
+                __pyx_t_8 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_back_low, __pyx_t_15, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 1, 0, 1, 1, 0);
                 __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
               }
-              __pyx_t_7 = __pyx_t_9;
+              __pyx_t_7 = __pyx_t_8;
             } else {
               __pyx_t_7 = __pyx_v_met_constraints;
             }
             if (__pyx_t_7) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1760
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1765
  *                                             self.train_max_initial_size, self.train_max_initial_size,
  *                                             0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()             # <<<<<<<<<<<<<<
@@ -56399,7 +56547,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_clear(__pyx_v_fphr_arr);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1761
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1766
  *                                             0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()
  *                                 i = 1             # <<<<<<<<<<<<<<
@@ -56408,21 +56556,21 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               __pyx_v_i = 1;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1762
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1767
  *                                 fphr_arr._clear()
  *                                 i = 1
  *                                 self.findexes.reset()             # <<<<<<<<<<<<<<
  *                                 if f_back_low < f_low:
  *                                     fphr_arr._append(sym_setindex(self.category, i))
  */
-              __pyx_t_15 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1762; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1767; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
-              __pyx_t_14 = PyObject_Call(__pyx_t_15, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1762; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyObject_Call(__pyx_t_15, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1767; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
               __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1763
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1768
  *                                 i = 1
  *                                 self.findexes.reset()
  *                                 if f_back_low < f_low:             # <<<<<<<<<<<<<<
@@ -56432,7 +56580,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               __pyx_t_7 = (__pyx_v_f_back_low < __pyx_v_f_low);
               if (__pyx_t_7) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1764
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1769
  *                                 self.findexes.reset()
  *                                 if f_back_low < f_low:
  *                                     fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -56441,7 +56589,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                 ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1765
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1770
  *                                 if f_back_low < f_low:
  *                                     fphr_arr._append(sym_setindex(self.category, i))
  *                                     i = i+1             # <<<<<<<<<<<<<<
@@ -56450,16 +56598,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                 __pyx_v_i = (__pyx_v_i + 1);
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1766
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1771
  *                                     fphr_arr._append(sym_setindex(self.category, i))
  *                                     i = i+1
  *                                     self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  *                                 self.findexes.extend(self.findexes1)
  *                                 for j from 0 <= j < phrase.n:
  */
-                __pyx_t_14 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1766; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_14 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1771; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_14);
-                __pyx_t_15 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_14); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1766; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_15 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_14); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1771; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_15);
                 __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
                 __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
@@ -56467,27 +56615,27 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               }
               __pyx_L85:;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1767
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1772
  *                                     i = i+1
  *                                     self.findexes.append(sym_setindex(self.category, i))
  *                                 self.findexes.extend(self.findexes1)             # <<<<<<<<<<<<<<
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):
  */
-              __pyx_t_15 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1767; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1772; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
-              __pyx_t_14 = PyTuple_New(1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1767; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyTuple_New(1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1772; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_INCREF(((PyObject *)__pyx_v_self->findexes1));
               PyTuple_SET_ITEM(__pyx_t_14, 0, ((PyObject *)__pyx_v_self->findexes1));
               __Pyx_GIVEREF(((PyObject *)__pyx_v_self->findexes1));
-              __pyx_t_1 = PyObject_Call(__pyx_t_15, ((PyObject *)__pyx_t_14), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1767; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyObject_Call(__pyx_t_15, ((PyObject *)__pyx_t_14), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1772; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
               __Pyx_DECREF(((PyObject *)__pyx_t_14)); __pyx_t_14 = 0;
               __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1768
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1773
  *                                     self.findexes.append(sym_setindex(self.category, i))
  *                                 self.findexes.extend(self.findexes1)
  *                                 for j from 0 <= j < phrase.n:             # <<<<<<<<<<<<<<
@@ -56497,7 +56645,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               __pyx_t_3 = __pyx_v_phrase->n;
               for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_3; __pyx_v_j++) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1769
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1774
  *                                 self.findexes.extend(self.findexes1)
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):             # <<<<<<<<<<<<<<
@@ -56507,7 +56655,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_t_4 = __pyx_f_3_sa_sym_isvar((__pyx_v_phrase->syms[__pyx_v_j]));
                 if (__pyx_t_4) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1770
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1775
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):
  *                                         fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -56516,7 +56664,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1771
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1776
  *                                     if sym_isvar(phrase.syms[j]):
  *                                         fphr_arr._append(sym_setindex(self.category, i))
  *                                         i = i + 1             # <<<<<<<<<<<<<<
@@ -56528,7 +56676,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 }
                 /*else*/ {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1773
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1778
  *                                         i = i + 1
  *                                     else:
  *                                         fphr_arr._append(phrase.syms[j])             # <<<<<<<<<<<<<<
@@ -56540,7 +56688,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_L88:;
               }
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1774
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1779
  *                                     else:
  *                                         fphr_arr._append(phrase.syms[j])
  *                                 fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -56549,81 +56697,81 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1775
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1780
  *                                         fphr_arr._append(phrase.syms[j])
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  *                                 fphr = Phrase(fphr_arr)
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low+gap_start, e_gap_high+gap_start, e_links_low, num_gaps+1,
  */
-              __pyx_t_1 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1775; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
-              __pyx_t_14 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1775; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
               __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1776
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1781
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr = Phrase(fphr_arr)             # <<<<<<<<<<<<<<
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low+gap_start, e_gap_high+gap_start, e_links_low, num_gaps+1,
  *                                                     f_x_low, f_x_high, f_gap_low+gap_start, f_gap_high+gap_start, f_links_low,
  */
-              __pyx_t_14 = PyTuple_New(1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1776; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyTuple_New(1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1781; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_INCREF(((PyObject *)__pyx_v_fphr_arr));
               PyTuple_SET_ITEM(__pyx_t_14, 0, ((PyObject *)__pyx_v_fphr_arr));
               __Pyx_GIVEREF(((PyObject *)__pyx_v_fphr_arr));
-              __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_14), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1776; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_14), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1781; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
               __Pyx_DECREF(((PyObject *)__pyx_t_14)); __pyx_t_14 = 0;
               __Pyx_DECREF(((PyObject *)__pyx_v_fphr));
               __pyx_v_fphr = ((struct __pyx_obj_3_sa_Phrase *)__pyx_t_1);
               __pyx_t_1 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1779
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1784
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low+gap_start, e_gap_high+gap_start, e_links_low, num_gaps+1,
  *                                                     f_x_low, f_x_high, f_gap_low+gap_start, f_gap_high+gap_start, f_links_low,
  *                                                     matching.sent_id, e_sent_len, e_sent_start)             # <<<<<<<<<<<<<<
  *                                 if len(phrase_list) > 0:
  *                                     pair_count = 1.0 / len(phrase_list)
  */
-              __pyx_t_1 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_x_low, __pyx_v_e_x_high, (__pyx_v_e_gap_low + __pyx_v_gap_start), (__pyx_v_e_gap_high + __pyx_v_gap_start), __pyx_v_e_links_low, (__pyx_v_num_gaps + 1), __pyx_v_f_x_low, __pyx_v_f_x_high, (__pyx_v_f_gap_low + __pyx_v_gap_start), (__pyx_v_f_gap_high + __pyx_v_gap_start), __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1777; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_x_low, __pyx_v_e_x_high, (__pyx_v_e_gap_low + __pyx_v_gap_start), (__pyx_v_e_gap_high + __pyx_v_gap_start), __pyx_v_e_links_low, (__pyx_v_num_gaps + 1), __pyx_v_f_x_low, __pyx_v_f_x_high, (__pyx_v_f_gap_low + __pyx_v_gap_start), (__pyx_v_f_gap_high + __pyx_v_gap_start), __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1782; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
               __Pyx_XDECREF(__pyx_v_phrase_list);
               __pyx_v_phrase_list = __pyx_t_1;
               __pyx_t_1 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1780
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1785
  *                                                     f_x_low, f_x_high, f_gap_low+gap_start, f_gap_high+gap_start, f_links_low,
  *                                                     matching.sent_id, e_sent_len, e_sent_start)
  *                                 if len(phrase_list) > 0:             # <<<<<<<<<<<<<<
  *                                     pair_count = 1.0 / len(phrase_list)
  *                                 else:
  */
-              __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1780; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1785; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __pyx_t_7 = (__pyx_t_13 > 0);
               if (__pyx_t_7) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1781
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1786
  *                                                     matching.sent_id, e_sent_len, e_sent_start)
  *                                 if len(phrase_list) > 0:
  *                                     pair_count = 1.0 / len(phrase_list)             # <<<<<<<<<<<<<<
  *                                 else:
  *                                     pair_count = 0
  */
-                __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1781; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1786; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 if (unlikely(__pyx_t_13 == 0)) {
                   PyErr_Format(PyExc_ZeroDivisionError, "float division");
-                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1781; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1786; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 }
                 __pyx_v_pair_count = (1.0 / __pyx_t_13);
                 goto __pyx_L89;
               }
               /*else*/ {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1783
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1788
  *                                     pair_count = 1.0 / len(phrase_list)
  *                                 else:
  *                                     pair_count = 0             # <<<<<<<<<<<<<<
@@ -56634,7 +56782,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               }
               __pyx_L89:;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1784
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1789
  *                                 else:
  *                                     pair_count = 0
  *                                 for phrase2, eindexes in phrase_list:             # <<<<<<<<<<<<<<
@@ -56645,31 +56793,23 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_t_1 = __pyx_v_phrase_list; __Pyx_INCREF(__pyx_t_1); __pyx_t_13 = 0;
                 __pyx_t_16 = NULL;
               } else {
-                __pyx_t_13 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_13 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1789; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_1);
                 __pyx_t_16 = Py_TYPE(__pyx_t_1)->tp_iternext;
               }
               for (;;) {
                 if (!__pyx_t_16 && PyList_CheckExact(__pyx_t_1)) {
                   if (__pyx_t_13 >= PyList_GET_SIZE(__pyx_t_1)) break;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  __pyx_t_14 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_13); __Pyx_INCREF(__pyx_t_14); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #else
-                  __pyx_t_14 = PySequence_ITEM(__pyx_t_1, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
+                  __pyx_t_14 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_13); __Pyx_INCREF(__pyx_t_14); __pyx_t_13++;
                 } else if (!__pyx_t_16 && PyTuple_CheckExact(__pyx_t_1)) {
                   if (__pyx_t_13 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  __pyx_t_14 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_13); __Pyx_INCREF(__pyx_t_14); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #else
-                  __pyx_t_14 = PySequence_ITEM(__pyx_t_1, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
+                  __pyx_t_14 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_13); __Pyx_INCREF(__pyx_t_14); __pyx_t_13++;
                 } else {
                   __pyx_t_14 = __pyx_t_16(__pyx_t_1);
                   if (unlikely(!__pyx_t_14)) {
                     if (PyErr_Occurred()) {
                       if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) PyErr_Clear();
-                      else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                      else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1789; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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                     break;
                   }
@@ -56677,35 +56817,29 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 }
                 if ((likely(PyTuple_CheckExact(__pyx_t_14))) || (PyList_CheckExact(__pyx_t_14))) {
                   PyObject* sequence = __pyx_t_14;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  Py_ssize_t size = Py_SIZE(sequence);
-                  #else
-                  Py_ssize_t size = PySequence_Size(sequence);
-                  #endif
-                  if (unlikely(size != 2)) {
-                    if (size > 2) __Pyx_RaiseTooManyValuesError(2);
-                    else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
-                    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  }
-                  #if CYTHON_COMPILING_IN_CPYTHON
                   if (likely(PyTuple_CheckExact(sequence))) {
+                    if (unlikely(PyTuple_GET_SIZE(sequence) != 2)) {
+                      if (PyTuple_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                      else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                      {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1789; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                    }
                     __pyx_t_15 = PyTuple_GET_ITEM(sequence, 0); 
                     __pyx_t_2 = PyTuple_GET_ITEM(sequence, 1); 
                   } else {
+                    if (unlikely(PyList_GET_SIZE(sequence) != 2)) {
+                      if (PyList_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                      else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                      {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1789; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                    }
                     __pyx_t_15 = PyList_GET_ITEM(sequence, 0); 
                     __pyx_t_2 = PyList_GET_ITEM(sequence, 1); 
                   }
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                   __Pyx_INCREF(__pyx_t_2);
-                  #else
-                  __pyx_t_15 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __pyx_t_2 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
                   __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
-                } else
-                {
+                } else {
                   Py_ssize_t index = -1;
-                  __pyx_t_10 = PyObject_GetIter(__pyx_t_14); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __pyx_t_10 = PyObject_GetIter(__pyx_t_14); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1789; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __Pyx_GOTREF(__pyx_t_10);
                   __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
                   __pyx_t_17 = Py_TYPE(__pyx_t_10)->tp_iternext;
@@ -56713,15 +56847,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                   __Pyx_GOTREF(__pyx_t_15);
                   index = 1; __pyx_t_2 = __pyx_t_17(__pyx_t_10); if (unlikely(!__pyx_t_2)) goto __pyx_L92_unpacking_failed;
                   __Pyx_GOTREF(__pyx_t_2);
-                  if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __pyx_t_17 = NULL;
+                  if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1789; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
                   goto __pyx_L93_unpacking_done;
                   __pyx_L92_unpacking_failed:;
                   __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
-                  __pyx_t_17 = NULL;
-                  if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
-                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1784; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  if (PyErr_Occurred() && PyErr_ExceptionMatches(PyExc_StopIteration)) PyErr_Clear();
+                  if (!PyErr_Occurred()) __Pyx_RaiseNeedMoreValuesError(index);
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1789; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __pyx_L93_unpacking_done:;
                 }
                 __Pyx_XDECREF(__pyx_v_phrase2);
@@ -56731,7 +56864,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_v_eindexes = __pyx_t_2;
                 __pyx_t_2 = 0;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1785
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1790
  *                                     pair_count = 0
  *                                 for phrase2, eindexes in phrase_list:
  *                                     als3 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)             # <<<<<<<<<<<<<<
@@ -56740,31 +56873,31 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                 __pyx_t_14 = ((PyObject *)__pyx_v_self->findexes);
                 __Pyx_INCREF(__pyx_t_14);
-                __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_14, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1785; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_14, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1790; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_2);
                 __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
                 __Pyx_XDECREF(((PyObject *)__pyx_v_als3));
                 __pyx_v_als3 = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_2);
                 __pyx_t_2 = 0;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1786
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1791
  *                                 for phrase2, eindexes in phrase_list:
  *                                     als3 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)
  *                                     extracts.append((fphr, phrase2, pair_count, tuple(als3)))             # <<<<<<<<<<<<<<
  *                         if (num_gaps < self.max_nonterminals - 1 and
  *                             phrase_len+1 < self.max_length and
  */
-                __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1786; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1791; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_2);
-                __pyx_t_14 = PyTuple_New(1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1786; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_14 = PyTuple_New(1); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1791; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_14);
                 __Pyx_INCREF(((PyObject *)__pyx_v_als3));
                 PyTuple_SET_ITEM(__pyx_t_14, 0, ((PyObject *)__pyx_v_als3));
                 __Pyx_GIVEREF(((PyObject *)__pyx_v_als3));
-                __pyx_t_15 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_14), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1786; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_15 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_14), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1791; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_15);
                 __Pyx_DECREF(((PyObject *)__pyx_t_14)); __pyx_t_14 = 0;
-                __pyx_t_14 = PyTuple_New(4); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1786; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_14 = PyTuple_New(4); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1791; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_14);
                 __Pyx_INCREF(((PyObject *)__pyx_v_fphr));
                 PyTuple_SET_ITEM(__pyx_t_14, 0, ((PyObject *)__pyx_v_fphr));
@@ -56778,7 +56911,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __Pyx_GIVEREF(__pyx_t_15);
                 __pyx_t_2 = 0;
                 __pyx_t_15 = 0;
-                __pyx_t_15 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_14)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1786; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_15 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_14)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1791; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_15);
                 __Pyx_DECREF(((PyObject *)__pyx_t_14)); __pyx_t_14 = 0;
                 __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
@@ -56791,7 +56924,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           }
           __pyx_L79:;
 
-          /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1787
+          /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1792
  *                                     als3 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)
  *                                     extracts.append((fphr, phrase2, pair_count, tuple(als3)))
  *                         if (num_gaps < self.max_nonterminals - 1 and             # <<<<<<<<<<<<<<
@@ -56801,17 +56934,17 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
           __pyx_t_7 = (__pyx_v_num_gaps < (__pyx_v_self->max_nonterminals - 1));
           if (__pyx_t_7) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1788
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1793
  *                                     extracts.append((fphr, phrase2, pair_count, tuple(als3)))
  *                         if (num_gaps < self.max_nonterminals - 1 and
  *                             phrase_len+1 < self.max_length and             # <<<<<<<<<<<<<<
  *                             f_back_high == f_high and
  *                             f_back_low == f_low and
  */
-            __pyx_t_9 = ((__pyx_v_phrase_len + 1) < __pyx_v_self->max_length);
-            if (__pyx_t_9) {
+            __pyx_t_8 = ((__pyx_v_phrase_len + 1) < __pyx_v_self->max_length);
+            if (__pyx_t_8) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1789
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1794
  *                         if (num_gaps < self.max_nonterminals - 1 and
  *                             phrase_len+1 < self.max_length and
  *                             f_back_high == f_high and             # <<<<<<<<<<<<<<
@@ -56821,17 +56954,17 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               __pyx_t_18 = (__pyx_v_f_back_high == __pyx_v_f_high);
               if (__pyx_t_18) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1790
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1795
  *                             phrase_len+1 < self.max_length and
  *                             f_back_high == f_high and
  *                             f_back_low == f_low and             # <<<<<<<<<<<<<<
  *                             f_back_high - f_back_low + (2*self.train_min_gap_size) <= self.train_max_initial_size and
  *                             f_low >= self.train_min_gap_size and
  */
-                __pyx_t_8 = (__pyx_v_f_back_low == __pyx_v_f_low);
-                if (__pyx_t_8) {
+                __pyx_t_9 = (__pyx_v_f_back_low == __pyx_v_f_low);
+                if (__pyx_t_9) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1791
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1796
  *                             f_back_high == f_high and
  *                             f_back_low == f_low and
  *                             f_back_high - f_back_low + (2*self.train_min_gap_size) <= self.train_max_initial_size and             # <<<<<<<<<<<<<<
@@ -56841,7 +56974,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                   __pyx_t_19 = (((__pyx_v_f_back_high - __pyx_v_f_back_low) + (2 * __pyx_v_self->train_min_gap_size)) <= __pyx_v_self->train_max_initial_size);
                   if (__pyx_t_19) {
 
-                    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1792
+                    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1797
  *                             f_back_low == f_low and
  *                             f_back_high - f_back_low + (2*self.train_min_gap_size) <= self.train_max_initial_size and
  *                             f_low >= self.train_min_gap_size and             # <<<<<<<<<<<<<<
@@ -56851,7 +56984,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                     __pyx_t_20 = (__pyx_v_f_low >= __pyx_v_self->train_min_gap_size);
                     if (__pyx_t_20) {
 
-                      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1793
+                      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1798
  *                             f_back_high - f_back_low + (2*self.train_min_gap_size) <= self.train_max_initial_size and
  *                             f_low >= self.train_min_gap_size and
  *                             f_high <= f_sent_len - self.train_min_gap_size and             # <<<<<<<<<<<<<<
@@ -56861,7 +56994,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                       __pyx_t_21 = (__pyx_v_f_high <= (__pyx_v_f_sent_len - __pyx_v_self->train_min_gap_size));
                       if (__pyx_t_21) {
 
-                        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1794
+                        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1799
  *                             f_low >= self.train_min_gap_size and
  *                             f_high <= f_sent_len - self.train_min_gap_size and
  *                             ((not self.tight_phrases) or (f_links_low[f_low-1] != -1 and f_links_low[f_high] != -1))):             # <<<<<<<<<<<<<<
@@ -56895,23 +57028,23 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                   }
                   __pyx_t_19 = __pyx_t_20;
                 } else {
-                  __pyx_t_19 = __pyx_t_8;
+                  __pyx_t_19 = __pyx_t_9;
                 }
-                __pyx_t_8 = __pyx_t_19;
+                __pyx_t_9 = __pyx_t_19;
               } else {
-                __pyx_t_8 = __pyx_t_18;
+                __pyx_t_9 = __pyx_t_18;
               }
-              __pyx_t_18 = __pyx_t_8;
-            } else {
               __pyx_t_18 = __pyx_t_9;
+            } else {
+              __pyx_t_18 = __pyx_t_8;
             }
-            __pyx_t_9 = __pyx_t_18;
+            __pyx_t_8 = __pyx_t_18;
           } else {
-            __pyx_t_9 = __pyx_t_7;
+            __pyx_t_8 = __pyx_t_7;
           }
-          if (__pyx_t_9) {
+          if (__pyx_t_8) {
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1796
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1801
  *                             ((not self.tight_phrases) or (f_links_low[f_low-1] != -1 and f_links_low[f_high] != -1))):
  * 
  *                             met_constraints = 1             # <<<<<<<<<<<<<<
@@ -56920,7 +57053,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_met_constraints = 1;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1797
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1802
  * 
  *                             met_constraints = 1
  *                             f_x_low = f_low-self.train_min_gap_size             # <<<<<<<<<<<<<<
@@ -56929,7 +57062,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_f_x_low = (__pyx_v_f_low - __pyx_v_self->train_min_gap_size);
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1798
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1803
  *                             met_constraints = 1
  *                             f_x_low = f_low-self.train_min_gap_size
  *                             if self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -56938,7 +57071,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             if (__pyx_v_self->tight_phrases) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1799
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1804
  *                             f_x_low = f_low-self.train_min_gap_size
  *                             if self.tight_phrases:
  *                                 while f_x_low >= 0 and f_links_low[f_x_low] == -1:             # <<<<<<<<<<<<<<
@@ -56946,16 +57079,16 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  *                             if f_x_low < 0:
  */
               while (1) {
-                __pyx_t_9 = (__pyx_v_f_x_low >= 0);
-                if (__pyx_t_9) {
+                __pyx_t_8 = (__pyx_v_f_x_low >= 0);
+                if (__pyx_t_8) {
                   __pyx_t_7 = ((__pyx_v_f_links_low[__pyx_v_f_x_low]) == -1);
                   __pyx_t_18 = __pyx_t_7;
                 } else {
-                  __pyx_t_18 = __pyx_t_9;
+                  __pyx_t_18 = __pyx_t_8;
                 }
                 if (!__pyx_t_18) break;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1800
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1805
  *                             if self.tight_phrases:
  *                                 while f_x_low >= 0 and f_links_low[f_x_low] == -1:
  *                                     f_x_low = f_x_low - 1             # <<<<<<<<<<<<<<
@@ -56968,7 +57101,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L95:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1801
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1806
  *                                 while f_x_low >= 0 and f_links_low[f_x_low] == -1:
  *                                     f_x_low = f_x_low - 1
  *                             if f_x_low < 0:             # <<<<<<<<<<<<<<
@@ -56978,7 +57111,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __pyx_t_18 = (__pyx_v_f_x_low < 0);
             if (__pyx_t_18) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1802
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1807
  *                                     f_x_low = f_x_low - 1
  *                             if f_x_low < 0:
  *                                 met_constraints = 0             # <<<<<<<<<<<<<<
@@ -56990,7 +57123,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L98:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1804
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1809
  *                                 met_constraints = 0
  * 
  *                             f_x_high = f_high+self.train_min_gap_size             # <<<<<<<<<<<<<<
@@ -56999,7 +57132,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             __pyx_v_f_x_high = (__pyx_v_f_high + __pyx_v_self->train_min_gap_size);
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1805
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1810
  * 
  *                             f_x_high = f_high+self.train_min_gap_size
  *                             if self.tight_phrases:             # <<<<<<<<<<<<<<
@@ -57008,7 +57141,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
             if (__pyx_v_self->tight_phrases) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1806
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1811
  *                             f_x_high = f_high+self.train_min_gap_size
  *                             if self.tight_phrases:
  *                                 while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1:             # <<<<<<<<<<<<<<
@@ -57018,14 +57151,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               while (1) {
                 __pyx_t_18 = (__pyx_v_f_x_high <= __pyx_v_f_sent_len);
                 if (__pyx_t_18) {
-                  __pyx_t_9 = ((__pyx_v_f_links_low[(__pyx_v_f_x_high - 1)]) == -1);
-                  __pyx_t_7 = __pyx_t_9;
+                  __pyx_t_8 = ((__pyx_v_f_links_low[(__pyx_v_f_x_high - 1)]) == -1);
+                  __pyx_t_7 = __pyx_t_8;
                 } else {
                   __pyx_t_7 = __pyx_t_18;
                 }
                 if (!__pyx_t_7) break;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1807
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1812
  *                             if self.tight_phrases:
  *                                 while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1:
  *                                     f_x_high = f_x_high + 1             # <<<<<<<<<<<<<<
@@ -57038,7 +57171,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L99:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1808
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1813
  *                                 while f_x_high <= f_sent_len and f_links_low[f_x_high-1] == -1:
  *                                     f_x_high = f_x_high + 1
  *                             if f_x_high > f_sent_len or f_x_high - f_x_low > self.train_max_initial_size:             # <<<<<<<<<<<<<<
@@ -57048,13 +57181,13 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             __pyx_t_7 = (__pyx_v_f_x_high > __pyx_v_f_sent_len);
             if (!__pyx_t_7) {
               __pyx_t_18 = ((__pyx_v_f_x_high - __pyx_v_f_x_low) > __pyx_v_self->train_max_initial_size);
-              __pyx_t_9 = __pyx_t_18;
+              __pyx_t_8 = __pyx_t_18;
             } else {
-              __pyx_t_9 = __pyx_t_7;
+              __pyx_t_8 = __pyx_t_7;
             }
-            if (__pyx_t_9) {
+            if (__pyx_t_8) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1809
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1814
  *                                     f_x_high = f_x_high + 1
  *                             if f_x_high > f_sent_len or f_x_high - f_x_low > self.train_max_initial_size:
  *                                 met_constraints = 0             # <<<<<<<<<<<<<<
@@ -57066,117 +57199,117 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
             }
             __pyx_L102:;
 
-            /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1811
+            /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1816
  *                                 met_constraints = 0
  * 
  *                             if (met_constraints and             # <<<<<<<<<<<<<<
- *                                 self.find_fixpoint(f_x_low, f_x_high,
+ *                                 (self.find_fixpoint(f_x_low, f_x_high,
  *                                                 f_links_low, f_links_high, e_links_low, e_links_high,
  */
             if (__pyx_v_met_constraints) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1812
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1817
  * 
  *                             if (met_constraints and
- *                                 self.find_fixpoint(f_x_low, f_x_high,             # <<<<<<<<<<<<<<
+ *                                 (self.find_fixpoint(f_x_low, f_x_high,             # <<<<<<<<<<<<<<
  *                                                 f_links_low, f_links_high, e_links_low, e_links_high,
  *                                                 e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high,
  */
-              __pyx_t_1 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1812; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1817; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1816
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1821
  *                                                 e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high,
  *                                                 f_sent_len, e_sent_len,
  *                                                 self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
- *                                                 1, 1, 2, 1, 1, 1, 1) and
+ *                                                 1, 1, 2, 1, 1, 1, 1) == 1) and
  *                                 ((not self.tight_phrases) or (f_links_low[f_x_low] != -1 and f_links_low[f_x_high-1] != -1)) and
  */
-              if (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 2, 1, 1, 1, 1)) {
-                __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+              __pyx_t_8 = (((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 2, 1, 1, 1, 1) == 1);
+              __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+              if (__pyx_t_8) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1818
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1823
  *                                                 self.train_max_initial_size, self.train_max_initial_size,
- *                                                 1, 1, 2, 1, 1, 1, 1) and
+ *                                                 1, 1, 2, 1, 1, 1, 1) == 1) and
  *                                 ((not self.tight_phrases) or (f_links_low[f_x_low] != -1 and f_links_low[f_x_high-1] != -1)) and             # <<<<<<<<<<<<<<
  *                                 self.find_fixpoint(f_x_low, f_low,
  *                                                 f_links_low, f_links_high, e_links_low, e_links_high,
  */
-                __pyx_t_9 = (!__pyx_v_self->tight_phrases);
-                if (!__pyx_t_9) {
-                  __pyx_t_7 = ((__pyx_v_f_links_low[__pyx_v_f_x_low]) != -1);
-                  if (__pyx_t_7) {
-                    __pyx_t_18 = ((__pyx_v_f_links_low[(__pyx_v_f_x_high - 1)]) != -1);
-                    __pyx_t_8 = __pyx_t_18;
+                __pyx_t_7 = (!__pyx_v_self->tight_phrases);
+                if (!__pyx_t_7) {
+                  __pyx_t_18 = ((__pyx_v_f_links_low[__pyx_v_f_x_low]) != -1);
+                  if (__pyx_t_18) {
+                    __pyx_t_9 = ((__pyx_v_f_links_low[(__pyx_v_f_x_high - 1)]) != -1);
+                    __pyx_t_19 = __pyx_t_9;
                   } else {
-                    __pyx_t_8 = __pyx_t_7;
+                    __pyx_t_19 = __pyx_t_18;
                   }
-                  __pyx_t_7 = __pyx_t_8;
+                  __pyx_t_18 = __pyx_t_19;
                 } else {
-                  __pyx_t_7 = __pyx_t_9;
+                  __pyx_t_18 = __pyx_t_7;
                 }
-                if (__pyx_t_7) {
+                if (__pyx_t_18) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1819
- *                                                 1, 1, 2, 1, 1, 1, 1) and
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1824
+ *                                                 1, 1, 2, 1, 1, 1, 1) == 1) and
  *                                 ((not self.tight_phrases) or (f_links_low[f_x_low] != -1 and f_links_low[f_x_high-1] != -1)) and
  *                                 self.find_fixpoint(f_x_low, f_low,             # <<<<<<<<<<<<<<
  *                                                 f_links_low, f_links_high, e_links_low, e_links_high,
  *                                                 -1, -1, e_gap_low, e_gap_high, f_gap_low, f_gap_high,
  */
-                  __pyx_t_15 = PyInt_FromLong(__pyx_v_f_low); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1819; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __Pyx_GOTREF(__pyx_t_15);
+                  __pyx_t_1 = PyInt_FromLong(__pyx_v_f_low); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1824; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __Pyx_GOTREF(__pyx_t_1);
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1823
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1828
  *                                                 -1, -1, e_gap_low, e_gap_high, f_gap_low, f_gap_high,
  *                                                 f_sent_len, e_sent_len,
  *                                                 self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
  *                                                 0, 0, 0, 0, 0, 0, 0) and
  *                                 self.find_fixpoint(f_high, f_x_high,
  */
-                  __pyx_t_3 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_15, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, -1, -1, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 0, 0, 0, 0, 0, 0, 0);
-                  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
+                  __pyx_t_3 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, -1, -1, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 0, 0, 0, 0, 0, 0, 0);
+                  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
                   if (__pyx_t_3) {
 
-                    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1825
+                    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1830
  *                                                 self.train_max_initial_size, self.train_max_initial_size,
  *                                                 0, 0, 0, 0, 0, 0, 0) and
  *                                 self.find_fixpoint(f_high, f_x_high,             # <<<<<<<<<<<<<<
  *                                                 f_links_low, f_links_high, e_links_low, e_links_high,
  *                                                 -1, -1, e_gap_low+1+num_gaps, e_gap_high+1+num_gaps,
  */
-                    __pyx_t_15 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1825; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                    __Pyx_GOTREF(__pyx_t_15);
+                    __pyx_t_1 = PyInt_FromLong(__pyx_v_f_x_high); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1830; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                    __Pyx_GOTREF(__pyx_t_1);
 
-                    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1830
+                    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1835
  *                                                 f_gap_low+1+num_gaps, f_gap_high+1+num_gaps,
  *                                                 f_sent_len, e_sent_len,
  *                                                 self.train_max_initial_size, self.train_max_initial_size,             # <<<<<<<<<<<<<<
  *                                                 0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()
  */
-                    __pyx_t_4 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_high, __pyx_t_15, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, -1, -1, ((__pyx_v_e_gap_low + 1) + __pyx_v_num_gaps), ((__pyx_v_e_gap_high + 1) + __pyx_v_num_gaps), ((__pyx_v_f_gap_low + 1) + __pyx_v_num_gaps), ((__pyx_v_f_gap_high + 1) + __pyx_v_num_gaps), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 0, 0, 0, 0, 0, 0, 0);
-                    __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
-                    __pyx_t_9 = __pyx_t_4;
+                    __pyx_t_4 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_high, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, -1, -1, ((__pyx_v_e_gap_low + 1) + __pyx_v_num_gaps), ((__pyx_v_e_gap_high + 1) + __pyx_v_num_gaps), ((__pyx_v_f_gap_low + 1) + __pyx_v_num_gaps), ((__pyx_v_f_gap_high + 1) + __pyx_v_num_gaps), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 0, 0, 0, 0, 0, 0, 0);
+                    __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+                    __pyx_t_7 = __pyx_t_4;
                   } else {
-                    __pyx_t_9 = __pyx_t_3;
+                    __pyx_t_7 = __pyx_t_3;
                   }
-                  __pyx_t_8 = __pyx_t_9;
+                  __pyx_t_19 = __pyx_t_7;
                 } else {
-                  __pyx_t_8 = __pyx_t_7;
+                  __pyx_t_19 = __pyx_t_18;
                 }
-                __pyx_t_7 = __pyx_t_8;
+                __pyx_t_18 = __pyx_t_19;
               } else {
-                __pyx_t_7 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->find_fixpoint(__pyx_v_self, __pyx_v_f_x_low, __pyx_t_1, __pyx_v_f_links_low, __pyx_v_f_links_high, __pyx_v_e_links_low, __pyx_v_e_links_high, __pyx_v_e_low, __pyx_v_e_high, (&__pyx_v_e_x_low), (&__pyx_v_e_x_high), (&__pyx_v_f_x_low), (&__pyx_v_f_x_high), __pyx_v_f_sent_len, __pyx_v_e_sent_len, __pyx_v_self->train_max_initial_size, __pyx_v_self->train_max_initial_size, 1, 1, 2, 1, 1, 1, 1);
-                __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+                __pyx_t_18 = __pyx_t_8;
               }
-              __pyx_t_8 = __pyx_t_7;
+              __pyx_t_8 = __pyx_t_18;
             } else {
               __pyx_t_8 = __pyx_v_met_constraints;
             }
             if (__pyx_t_8) {
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1832
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1837
  *                                                 self.train_max_initial_size, self.train_max_initial_size,
  *                                                 0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()             # <<<<<<<<<<<<<<
@@ -57185,7 +57318,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_clear(__pyx_v_fphr_arr);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1833
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1838
  *                                                 0, 0, 0, 0, 0, 0, 0)):
  *                                 fphr_arr._clear()
  *                                 i = 1             # <<<<<<<<<<<<<<
@@ -57194,35 +57327,35 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               __pyx_v_i = 1;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1834
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1839
  *                                 fphr_arr._clear()
  *                                 i = 1
  *                                 self.findexes.reset()             # <<<<<<<<<<<<<<
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  */
-              __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1834; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__reset); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1839; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
-              __pyx_t_15 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1834; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_empty_tuple), NULL); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1839; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
               __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1835
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1840
  *                                 i = 1
  *                                 self.findexes.reset()
  *                                 self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 i = i+1
  */
-              __pyx_t_15 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1835; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1840; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
-              __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_15); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1835; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_15); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1840; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
               __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1836
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1841
  *                                 self.findexes.reset()
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -57231,7 +57364,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1837
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1842
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 i = i+1             # <<<<<<<<<<<<<<
@@ -57240,27 +57373,27 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               __pyx_v_i = (__pyx_v_i + 1);
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1838
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1843
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 i = i+1
  *                                 self.findexes.extend(self.findexes1)             # <<<<<<<<<<<<<<
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):
  */
-              __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1838; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self->findexes), __pyx_n_s__extend); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1843; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_1);
-              __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1838; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1843; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
               __Pyx_INCREF(((PyObject *)__pyx_v_self->findexes1));
               PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_v_self->findexes1));
               __Pyx_GIVEREF(((PyObject *)__pyx_v_self->findexes1));
-              __pyx_t_14 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1838; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyObject_Call(__pyx_t_1, ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1843; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
               __Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
               __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1839
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1844
  *                                 i = i+1
  *                                 self.findexes.extend(self.findexes1)
  *                                 for j from 0 <= j < phrase.n:             # <<<<<<<<<<<<<<
@@ -57270,7 +57403,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               __pyx_t_3 = __pyx_v_phrase->n;
               for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_3; __pyx_v_j++) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1840
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1845
  *                                 self.findexes.extend(self.findexes1)
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):             # <<<<<<<<<<<<<<
@@ -57280,7 +57413,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_t_4 = __pyx_f_3_sa_sym_isvar((__pyx_v_phrase->syms[__pyx_v_j]));
                 if (__pyx_t_4) {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1841
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1846
  *                                 for j from 0 <= j < phrase.n:
  *                                     if sym_isvar(phrase.syms[j]):
  *                                         fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -57289,7 +57422,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
                   ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1842
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1847
  *                                     if sym_isvar(phrase.syms[j]):
  *                                         fphr_arr._append(sym_setindex(self.category, i))
  *                                         i = i + 1             # <<<<<<<<<<<<<<
@@ -57301,7 +57434,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 }
                 /*else*/ {
 
-                  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1844
+                  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1849
  *                                         i = i + 1
  *                                     else:
  *                                         fphr_arr._append(phrase.syms[j])             # <<<<<<<<<<<<<<
@@ -57313,7 +57446,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_L106:;
               }
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1845
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1850
  *                                     else:
  *                                         fphr_arr._append(phrase.syms[j])
  *                                 fphr_arr._append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
@@ -57322,81 +57455,81 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
               ((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_fphr_arr->__pyx_vtab)->_append(__pyx_v_fphr_arr, __pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i));
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1846
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1851
  *                                         fphr_arr._append(phrase.syms[j])
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 self.findexes.append(sym_setindex(self.category, i))             # <<<<<<<<<<<<<<
  *                                 fphr = Phrase(fphr_arr)
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+2,
  */
-              __pyx_t_14 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1846; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyInt_FromLong(__pyx_f_3_sa_sym_setindex(__pyx_v_self->category, __pyx_v_i)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1851; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
-              __pyx_t_15 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_14); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1846; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = __Pyx_PyObject_Append(((PyObject *)__pyx_v_self->findexes), __pyx_t_14); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1851; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
               __Pyx_DECREF(__pyx_t_14); __pyx_t_14 = 0;
               __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1847
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1852
  *                                 fphr_arr._append(sym_setindex(self.category, i))
  *                                 self.findexes.append(sym_setindex(self.category, i))
  *                                 fphr = Phrase(fphr_arr)             # <<<<<<<<<<<<<<
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+2,
  *                                                     f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low,
  */
-              __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1847; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1852; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_15);
               __Pyx_INCREF(((PyObject *)__pyx_v_fphr_arr));
               PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_v_fphr_arr));
               __Pyx_GIVEREF(((PyObject *)__pyx_v_fphr_arr));
-              __pyx_t_14 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1847; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_Phrase)), ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1852; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
               __Pyx_DECREF(((PyObject *)__pyx_v_fphr));
               __pyx_v_fphr = ((struct __pyx_obj_3_sa_Phrase *)__pyx_t_14);
               __pyx_t_14 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1850
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1855
  *                                 phrase_list = self.extract_phrases(e_x_low, e_x_high, e_gap_low, e_gap_high, e_links_low, num_gaps+2,
  *                                                     f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low,
  *                                                     matching.sent_id, e_sent_len, e_sent_start)             # <<<<<<<<<<<<<<
  *                                 if len(phrase_list) > 0:
  *                                     pair_count = 1.0 / len(phrase_list)
  */
-              __pyx_t_14 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_x_low, __pyx_v_e_x_high, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_e_links_low, (__pyx_v_num_gaps + 2), __pyx_v_f_x_low, __pyx_v_f_x_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1848; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_14 = ((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->extract_phrases(__pyx_v_self, __pyx_v_e_x_low, __pyx_v_e_x_high, __pyx_v_e_gap_low, __pyx_v_e_gap_high, __pyx_v_e_links_low, (__pyx_v_num_gaps + 2), __pyx_v_f_x_low, __pyx_v_f_x_high, __pyx_v_f_gap_low, __pyx_v_f_gap_high, __pyx_v_f_links_low, __pyx_v_matching->sent_id, __pyx_v_e_sent_len, __pyx_v_e_sent_start); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1853; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __Pyx_GOTREF(__pyx_t_14);
               __Pyx_XDECREF(__pyx_v_phrase_list);
               __pyx_v_phrase_list = __pyx_t_14;
               __pyx_t_14 = 0;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1851
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1856
  *                                                     f_x_low, f_x_high, f_gap_low, f_gap_high, f_links_low,
  *                                                     matching.sent_id, e_sent_len, e_sent_start)
  *                                 if len(phrase_list) > 0:             # <<<<<<<<<<<<<<
  *                                     pair_count = 1.0 / len(phrase_list)
  *                                 else:
  */
-              __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1851; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1856; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
               __pyx_t_8 = (__pyx_t_13 > 0);
               if (__pyx_t_8) {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1852
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1857
  *                                                     matching.sent_id, e_sent_len, e_sent_start)
  *                                 if len(phrase_list) > 0:
  *                                     pair_count = 1.0 / len(phrase_list)             # <<<<<<<<<<<<<<
  *                                 else:
  *                                     pair_count = 0
  */
-                __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1852; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_13 = PyObject_Length(__pyx_v_phrase_list); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 if (unlikely(__pyx_t_13 == 0)) {
                   PyErr_Format(PyExc_ZeroDivisionError, "float division");
-                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1852; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 }
                 __pyx_v_pair_count = (1.0 / __pyx_t_13);
                 goto __pyx_L107;
               }
               /*else*/ {
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1854
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1859
  *                                     pair_count = 1.0 / len(phrase_list)
  *                                 else:
  *                                     pair_count = 0             # <<<<<<<<<<<<<<
@@ -57407,7 +57540,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
               }
               __pyx_L107:;
 
-              /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1855
+              /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1860
  *                                 else:
  *                                     pair_count = 0
  *                                 for phrase2, eindexes in phrase_list:             # <<<<<<<<<<<<<<
@@ -57418,31 +57551,23 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_t_14 = __pyx_v_phrase_list; __Pyx_INCREF(__pyx_t_14); __pyx_t_13 = 0;
                 __pyx_t_16 = NULL;
               } else {
-                __pyx_t_13 = -1; __pyx_t_14 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_13 = -1; __pyx_t_14 = PyObject_GetIter(__pyx_v_phrase_list); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_14);
                 __pyx_t_16 = Py_TYPE(__pyx_t_14)->tp_iternext;
               }
               for (;;) {
                 if (!__pyx_t_16 && PyList_CheckExact(__pyx_t_14)) {
                   if (__pyx_t_13 >= PyList_GET_SIZE(__pyx_t_14)) break;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  __pyx_t_15 = PyList_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #else
-                  __pyx_t_15 = PySequence_ITEM(__pyx_t_14, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
+                  __pyx_t_15 = PyList_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++;
                 } else if (!__pyx_t_16 && PyTuple_CheckExact(__pyx_t_14)) {
                   if (__pyx_t_13 >= PyTuple_GET_SIZE(__pyx_t_14)) break;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  __pyx_t_15 = PyTuple_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #else
-                  __pyx_t_15 = PySequence_ITEM(__pyx_t_14, __pyx_t_13); __pyx_t_13++; if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
+                  __pyx_t_15 = PyTuple_GET_ITEM(__pyx_t_14, __pyx_t_13); __Pyx_INCREF(__pyx_t_15); __pyx_t_13++;
                 } else {
                   __pyx_t_15 = __pyx_t_16(__pyx_t_14);
                   if (unlikely(!__pyx_t_15)) {
                     if (PyErr_Occurred()) {
                       if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) PyErr_Clear();
-                      else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                      else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                     }
                     break;
                   }
@@ -57450,35 +57575,29 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 }
                 if ((likely(PyTuple_CheckExact(__pyx_t_15))) || (PyList_CheckExact(__pyx_t_15))) {
                   PyObject* sequence = __pyx_t_15;
-                  #if CYTHON_COMPILING_IN_CPYTHON
-                  Py_ssize_t size = Py_SIZE(sequence);
-                  #else
-                  Py_ssize_t size = PySequence_Size(sequence);
-                  #endif
-                  if (unlikely(size != 2)) {
-                    if (size > 2) __Pyx_RaiseTooManyValuesError(2);
-                    else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
-                    {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  }
-                  #if CYTHON_COMPILING_IN_CPYTHON
                   if (likely(PyTuple_CheckExact(sequence))) {
+                    if (unlikely(PyTuple_GET_SIZE(sequence) != 2)) {
+                      if (PyTuple_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                      else __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(sequence));
+                      {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                    }
                     __pyx_t_1 = PyTuple_GET_ITEM(sequence, 0); 
                     __pyx_t_2 = PyTuple_GET_ITEM(sequence, 1); 
                   } else {
+                    if (unlikely(PyList_GET_SIZE(sequence) != 2)) {
+                      if (PyList_GET_SIZE(sequence) > 2) __Pyx_RaiseTooManyValuesError(2);
+                      else __Pyx_RaiseNeedMoreValuesError(PyList_GET_SIZE(sequence));
+                      {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                    }
                     __pyx_t_1 = PyList_GET_ITEM(sequence, 0); 
                     __pyx_t_2 = PyList_GET_ITEM(sequence, 1); 
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                   __Pyx_INCREF(__pyx_t_2);
-                  #else
-                  __pyx_t_1 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __pyx_t_2 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  #endif
                   __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
-                } else
-                {
+                } else {
                   Py_ssize_t index = -1;
-                  __pyx_t_10 = PyObject_GetIter(__pyx_t_15); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  __pyx_t_10 = PyObject_GetIter(__pyx_t_15); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -57486,15 +57605,14 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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                   __Pyx_GOTREF(__pyx_t_2);
-                  if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-                  __pyx_t_17 = NULL;
+                  if (__Pyx_IternextUnpackEndCheck(__pyx_t_17(__pyx_t_10), 2) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                   __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
                   goto __pyx_L111_unpacking_done;
                   __pyx_L110_unpacking_failed:;
                   __Pyx_DECREF(__pyx_t_10); __pyx_t_10 = 0;
-                  __pyx_t_17 = NULL;
-                  if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
-                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1855; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                  if (PyErr_Occurred() && PyErr_ExceptionMatches(PyExc_StopIteration)) PyErr_Clear();
+                  if (!PyErr_Occurred()) __Pyx_RaiseNeedMoreValuesError(index);
+                  {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1860; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -57504,7 +57622,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __pyx_v_eindexes = __pyx_t_2;
                 __pyx_t_2 = 0;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1856
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1861
  *                                     pair_count = 0
  *                                 for phrase2, eindexes in phrase_list:
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@@ -57513,31 +57631,31 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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                 __pyx_t_15 = ((PyObject *)__pyx_v_self->findexes);
                 __Pyx_INCREF(__pyx_t_15);
-                __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_15, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1856; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_2 = ((PyObject *)((struct __pyx_vtabstruct_3_sa_HieroCachingRuleFactory *)__pyx_v_self->__pyx_vtab)->create_alignments(__pyx_v_self, __pyx_v_sent_links, __pyx_v_num_links, __pyx_t_15, __pyx_v_eindexes)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1861; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_2);
                 __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
                 __Pyx_XDECREF(((PyObject *)__pyx_v_als4));
                 __pyx_v_als4 = ((struct __pyx_obj_3_sa_IntList *)__pyx_t_2);
                 __pyx_t_2 = 0;
 
-                /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1857
+                /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1862
  *                                 for phrase2, eindexes in phrase_list:
  *                                     als4 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)
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  *             else:
  *                 reason_for_failure = "Unable to extract basic phrase"
  */
-                __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_2 = PyFloat_FromDouble(__pyx_v_pair_count); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_2);
-                __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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                 __Pyx_INCREF(((PyObject *)__pyx_v_als4));
                 PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_v_als4));
                 __Pyx_GIVEREF(((PyObject *)__pyx_v_als4));
-                __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)(&PyTuple_Type))), ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-                __pyx_t_15 = PyTuple_New(4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_15 = PyTuple_New(4); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_15);
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                 PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_v_fphr));
@@ -57551,7 +57669,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
                 __Pyx_GIVEREF(__pyx_t_1);
                 __pyx_t_2 = 0;
                 __pyx_t_1 = 0;
-                __pyx_t_1 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1857; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+                __pyx_t_1 = __Pyx_PyObject_Append(__pyx_v_extracts, ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1862; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                 __Pyx_GOTREF(__pyx_t_1);
                 __Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
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@@ -57573,23 +57691,23 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
     }
     /*else*/ {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1859
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1864
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  *                 reason_for_failure = "Unable to extract basic phrase"             # <<<<<<<<<<<<<<
  * 
  *         free(sent_links)
  */
-      __Pyx_INCREF(((PyObject *)__pyx_kp_s_133));
+      __Pyx_INCREF(((PyObject *)__pyx_kp_s_134));
       __Pyx_DECREF(__pyx_v_reason_for_failure);
-      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_133);
+      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_134);
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     __pyx_L34:;
     goto __pyx_L33;
   }
   __pyx_L33:;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1861
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1866
  *                 reason_for_failure = "Unable to extract basic phrase"
  * 
  *         free(sent_links)             # <<<<<<<<<<<<<<
@@ -57598,7 +57716,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_sent_links);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1862
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1867
  * 
  *         free(sent_links)
  *         free(f_links_low)             # <<<<<<<<<<<<<<
@@ -57607,7 +57725,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_f_links_low);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1863
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1868
  *         free(sent_links)
  *         free(f_links_low)
  *         free(f_links_high)             # <<<<<<<<<<<<<<
@@ -57616,7 +57734,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_f_links_high);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1864
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1869
  *         free(f_links_low)
  *         free(f_links_high)
  *         free(e_links_low)             # <<<<<<<<<<<<<<
@@ -57625,7 +57743,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_e_links_low);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1865
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1870
  *         free(f_links_high)
  *         free(e_links_low)
  *         free(e_links_high)             # <<<<<<<<<<<<<<
@@ -57634,7 +57752,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_e_links_high);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1866
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1871
  *         free(e_links_low)
  *         free(e_links_high)
  *         free(f_gap_low)             # <<<<<<<<<<<<<<
@@ -57643,7 +57761,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_f_gap_low);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1867
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1872
  *         free(e_links_high)
  *         free(f_gap_low)
  *         free(f_gap_high)             # <<<<<<<<<<<<<<
@@ -57652,7 +57770,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_f_gap_high);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1868
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1873
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  *         free(f_gap_high)
  *         free(e_gap_low)             # <<<<<<<<<<<<<<
@@ -57661,7 +57779,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_e_gap_low);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1869
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1874
  *         free(f_gap_high)
  *         free(e_gap_low)
  *         free(e_gap_high)             # <<<<<<<<<<<<<<
@@ -57670,7 +57788,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  */
   free(__pyx_v_e_gap_high);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1871
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1876
  *         free(e_gap_high)
  * 
  *         return extracts             # <<<<<<<<<<<<<<
@@ -57718,11 +57836,11 @@ static PyObject *__pyx_pw_3_sa_23HieroCachingRuleFactory_26add_instance(PyObject
   PyObject *__pyx_v_f_words = 0;
   PyObject *__pyx_v_e_words = 0;
   PyObject *__pyx_v_alignment = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__f_words,&__pyx_n_s__e_words,&__pyx_n_s__alignment,0};
   PyObject *__pyx_r = 0;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("add_instance (wrapper)", 0);
   {
-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__f_words,&__pyx_n_s__e_words,&__pyx_n_s__alignment,0};
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     if (unlikely(__pyx_kwds)) {
       Py_ssize_t kw_args;
@@ -57737,21 +57855,24 @@ static PyObject *__pyx_pw_3_sa_23HieroCachingRuleFactory_26add_instance(PyObject
       kw_args = PyDict_Size(__pyx_kwds);
       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__f_words)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__f_words);
+        if (likely(values[0])) kw_args--;
         else goto __pyx_L5_argtuple_error;
         case  1:
-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__e_words)) != 0)) kw_args--;
+        values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__e_words);
+        if (likely(values[1])) kw_args--;
         else {
-          __Pyx_RaiseArgtupleInvalid("add_instance", 1, 3, 3, 1); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1879; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+          __Pyx_RaiseArgtupleInvalid("add_instance", 1, 3, 3, 1); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1884; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
         case  2:
-        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__alignment)) != 0)) kw_args--;
+        values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__alignment);
+        if (likely(values[2])) kw_args--;
         else {
-          __Pyx_RaiseArgtupleInvalid("add_instance", 1, 3, 3, 2); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1879; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+          __Pyx_RaiseArgtupleInvalid("add_instance", 1, 3, 3, 2); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1884; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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       }
       if (unlikely(kw_args > 0)) {
-        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "add_instance") < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1879; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+        if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "add_instance") < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1884; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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       goto __pyx_L5_argtuple_error;
@@ -57766,7 +57887,7 @@ static PyObject *__pyx_pw_3_sa_23HieroCachingRuleFactory_26add_instance(PyObject
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   goto __pyx_L4_argument_unpacking_done;
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-  __Pyx_RaiseArgtupleInvalid("add_instance", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1879; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+  __Pyx_RaiseArgtupleInvalid("add_instance", 1, 3, 3, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1884; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
   __pyx_L3_error:;
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@@ -57790,11 +57911,12 @@ static PyObject *__pyx_pw_3_sa_23HieroCachingRuleFactory_12add_instance_1extract
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   PyObject *__pyx_v_nt_open = 0;
+  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__f_i,&__pyx_n_s__f_j,&__pyx_n_s__e_i,&__pyx_n_s__e_j,&__pyx_n_s__min_bound,&__pyx_n_s__wc,&__pyx_n_s__links,&__pyx_n_s__nt,&__pyx_n_s__nt_open,0};
   PyObject *__pyx_r = 0;
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("extract (wrapper)", 0);
+  __pyx_self = __pyx_self;
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-    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__f_i,&__pyx_n_s__f_j,&__pyx_n_s__e_i,&__pyx_n_s__e_j,&__pyx_n_s__min_bound,&__pyx_n_s__wc,&__pyx_n_s__links,&__pyx_n_s__nt,&__pyx_n_s__nt_open,0};
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@@ -57815,51 +57937,60 @@ static PyObject *__pyx_pw_3_sa_23HieroCachingRuleFactory_12add_instance_1extract
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       switch (pos_args) {
         case  0:
-        if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__f_i)) != 0)) kw_args--;
+        values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__f_i);
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-        if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__f_j)) != 0)) kw_args--;
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-          __Pyx_RaiseArgtupleInvalid("extract", 1, 9, 9, 1); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1913; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+          __Pyx_RaiseArgtupleInvalid("extract", 1, 9, 9, 1); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1918; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
         }
         case  2:
-        if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__e_i)) != 0)) kw_args--;
+        values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s__e_i);
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1945
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-        __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1956; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-        #endif
+        __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_7); __Pyx_INCREF(__pyx_t_4); __pyx_t_7++;
       } else {
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             if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) PyErr_Clear();
-            else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1956; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+            else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1961; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58672,21 +58808,21 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
       __pyx_v_link = __pyx_t_4;
       __pyx_t_4 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1957
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1962
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-      __pyx_t_4 = PyObject_GetItem(__pyx_cur_scope->__pyx_v_e_nt_cover, __pyx_v_link); if (!__pyx_t_4) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1957; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      if (unlikely(!__pyx_cur_scope->__pyx_v_e_nt_cover)) { __Pyx_RaiseClosureNameError("e_nt_cover"); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1962; __pyx_clineno = __LINE__; goto __pyx_L1_error;} }
+      __pyx_t_4 = PyObject_GetItem(__pyx_cur_scope->__pyx_v_e_nt_cover, __pyx_v_link); if (!__pyx_t_4) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1962; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1957; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1962; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1958
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1963
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@@ -58700,7 +58836,7 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
     }
     __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1961
+    /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1966
  *                 # Non-terminal collisions block word extraction and extension, but
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  *                 if not nt_collision and wc < self.max_length:             # <<<<<<<<<<<<<<
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     __pyx_t_3 = (!__pyx_v_nt_collision);
     if (__pyx_t_3) {
-      __pyx_t_2 = PyInt_FromLong(__pyx_cur_scope->__pyx_v_self->max_length); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1961; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = PyInt_FromLong(__pyx_cur_scope->__pyx_v_self->max_length); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1966; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       __Pyx_GOTREF(__pyx_t_2);
-      __pyx_t_4 = PyObject_RichCompare(__pyx_v_wc, __pyx_t_2, Py_LT); __Pyx_XGOTREF(__pyx_t_4); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1961; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = PyObject_RichCompare(__pyx_v_wc, __pyx_t_2, Py_LT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1966; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __Pyx_GOTREF(__pyx_t_4);
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
-      __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1961; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1966; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58721,32 +58858,32 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
     }
     if (__pyx_t_5) {
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1962
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1967
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  *                     plus_links = []             # <<<<<<<<<<<<<<
  *                     for link in al[f_j]:
  *                         plus_links.append((f_j, link))
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-      __pyx_t_4 = PyList_New(0); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1962; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = PyList_New(0); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1967; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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       __pyx_v_plus_links = __pyx_t_4;
       __pyx_t_4 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1963
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1968
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  *                     for link in al[f_j]:             # <<<<<<<<<<<<<<
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-      __pyx_t_4 = PyObject_GetItem(__pyx_cur_scope->__pyx_v_al, __pyx_v_f_j); if (!__pyx_t_4) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1963; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = PyObject_GetItem(__pyx_cur_scope->__pyx_v_al, __pyx_v_f_j); if (!__pyx_t_4) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1968; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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         __pyx_t_2 = __pyx_t_4; __Pyx_INCREF(__pyx_t_2); __pyx_t_7 = 0;
         __pyx_t_12 = NULL;
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-        __pyx_t_7 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1963; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_7 = -1; __pyx_t_2 = PyObject_GetIter(__pyx_t_4); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1968; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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         __pyx_t_12 = Py_TYPE(__pyx_t_2)->tp_iternext;
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@@ -58754,24 +58891,16 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
       for (;;) {
         if (!__pyx_t_12 && PyList_CheckExact(__pyx_t_2)) {
           if (__pyx_t_7 >= PyList_GET_SIZE(__pyx_t_2)) break;
-          #if CYTHON_COMPILING_IN_CPYTHON
-          __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_7); __Pyx_INCREF(__pyx_t_4); __pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1963; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          #else
-          __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1963; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          #endif
+          __pyx_t_4 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_7); __Pyx_INCREF(__pyx_t_4); __pyx_t_7++;
         } else if (!__pyx_t_12 && PyTuple_CheckExact(__pyx_t_2)) {
           if (__pyx_t_7 >= PyTuple_GET_SIZE(__pyx_t_2)) break;
-          #if CYTHON_COMPILING_IN_CPYTHON
-          __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_7); __Pyx_INCREF(__pyx_t_4); __pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1963; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          #else
-          __pyx_t_4 = PySequence_ITEM(__pyx_t_2, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1963; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          #endif
+          __pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_7); __Pyx_INCREF(__pyx_t_4); __pyx_t_7++;
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           __pyx_t_4 = __pyx_t_12(__pyx_t_2);
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               if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) PyErr_Clear();
-              else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1963; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1968; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58781,14 +58910,14 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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         __pyx_t_4 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1964
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1969
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  *                     for link in al[f_j]:
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-        __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1964; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_4 = PyTuple_New(2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1969; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58796,10 +58925,10 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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-        __pyx_t_13 = PyList_Append(__pyx_v_plus_links, ((PyObject *)__pyx_t_4)); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1964; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_13 = PyList_Append(__pyx_v_plus_links, ((PyObject *)__pyx_t_4)); if (unlikely(__pyx_t_13 == -1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1969; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_DECREF(((PyObject *)__pyx_t_4)); __pyx_t_4 = 0;
 
-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1965
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1970
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-        __pyx_t_8 = PyObject_GetItem(__pyx_cur_scope->__pyx_v_cover, __pyx_t_4); if (!__pyx_t_8) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1965; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        if (unlikely(!__pyx_cur_scope->__pyx_v_cover)) { __Pyx_RaiseClosureNameError("cover"); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1970; __pyx_clineno = __LINE__; goto __pyx_L1_error;} }
+        __pyx_t_8 = PyObject_GetItem(__pyx_cur_scope->__pyx_v_cover, __pyx_t_4); if (!__pyx_t_8) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1970; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        __pyx_t_1 = PyNumber_InPlaceAdd(__pyx_t_8, __pyx_int_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1965; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_1 = PyNumber_InPlaceAdd(__pyx_t_8, __pyx_int_1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1970; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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         __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
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-        if (PyObject_SetItem(__pyx_cur_scope->__pyx_v_cover, __pyx_t_4, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1965; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        if (unlikely(!__pyx_cur_scope->__pyx_v_cover)) { __Pyx_RaiseClosureNameError("cover"); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1970; __pyx_clineno = __LINE__; goto __pyx_L1_error;} }
+        if (PyObject_SetItem(__pyx_cur_scope->__pyx_v_cover, __pyx_t_4, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1970; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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       }
       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1966
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1971
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  *                         cover[link] += 1
  *                     links.append(plus_links)             # <<<<<<<<<<<<<<
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-      __pyx_t_2 = __Pyx_PyObject_Append(__pyx_v_links, ((PyObject *)__pyx_v_plus_links)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1966; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_2 = __Pyx_PyObject_Append(__pyx_v_links, ((PyObject *)__pyx_v_plus_links)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1971; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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       __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1967
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1972
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  *                     links.append(plus_links)
  *                     if links and f_j >= new_min_bound:             # <<<<<<<<<<<<<<
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-      __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_v_links); if (unlikely(__pyx_t_5 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1967; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_5 = __Pyx_PyObject_IsTrue(__pyx_v_links); if (unlikely(__pyx_t_5 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1972; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       if (__pyx_t_5) {
-        __pyx_t_2 = PyObject_RichCompare(__pyx_v_f_j, __pyx_v_new_min_bound, Py_GE); __Pyx_XGOTREF(__pyx_t_2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1967; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1967; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_2 = PyObject_RichCompare(__pyx_v_f_j, __pyx_v_new_min_bound, Py_GE); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1972; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __Pyx_GOTREF(__pyx_t_2);
+        __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_3 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1972; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58850,35 +58980,35 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
       }
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1968
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1973
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+        __pyx_t_8 = __Pyx_PySequence_GetSlice(__pyx_cur_scope->__pyx_v_e_words, __pyx_t_14, __pyx_t_7); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1973; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+        __pyx_t_15 = PyTuple_New(6); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1973; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58898,16 +59028,16 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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+        __pyx_t_8 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1973; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+        __pyx_t_15 = PyTuple_New(1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1973; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+        __pyx_t_8 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_t_15), NULL); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1973; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58916,21 +59046,21 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
       }
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1969
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1974
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+      if (unlikely(!__pyx_cur_scope->__pyx_v_extract)) { __Pyx_RaiseClosureNameError("extract"); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1974; __pyx_clineno = __LINE__; goto __pyx_L1_error;} }
+      __pyx_t_8 = PyNumber_Add(__pyx_v_f_j, __pyx_int_1); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1974; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_15 = PyNumber_Add(__pyx_v_wc, __pyx_int_1); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1974; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_2 = __Pyx_PyBool_FromLong(0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1974; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      __pyx_t_4 = PyTuple_New(9); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1969; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_4 = PyTuple_New(9); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1974; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58959,36 +59089,36 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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+      __pyx_t_2 = PyObject_Call(__pyx_cur_scope->__pyx_v_extract, ((PyObject *)__pyx_t_4), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1974; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1970
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1975
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+      __pyx_t_2 = __Pyx_PyObject_Pop(__pyx_v_links); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1975; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1971
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+        __pyx_t_7 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_2); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1976; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -58996,24 +59126,16 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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-          #if CYTHON_COMPILING_IN_CPYTHON
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-          #else
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-          #endif
+          __pyx_t_2 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_7); __Pyx_INCREF(__pyx_t_2); __pyx_t_7++;
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-          #if CYTHON_COMPILING_IN_CPYTHON
-          __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_7); __Pyx_INCREF(__pyx_t_2); __pyx_t_7++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1971; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-          #else
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-          #endif
+          __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_7); __Pyx_INCREF(__pyx_t_2); __pyx_t_7++;
         } else {
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               if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) PyErr_Clear();
-              else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1971; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+              else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1976; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -59023,7 +59145,7 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1972
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1977
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1980
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+      __pyx_t_4 = PyTuple_New(3); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1987; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1983
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1988
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+      if (unlikely(!__pyx_cur_scope->__pyx_v_e_nt_cover)) { __Pyx_RaiseClosureNameError("e_nt_cover"); {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1988; __pyx_clineno = __LINE__; goto __pyx_L1_error;} }
+      __pyx_t_4 = __Pyx_GetItemInt(__pyx_v_nt, -1, sizeof(long), PyInt_FromLong); if (!__pyx_t_4) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1988; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_4 = PyNumber_Subtract(__pyx_t_8, __pyx_int_1); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1988; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_8 = PyTuple_New(3); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1988; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -59247,64 +59371,65 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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+      __pyx_t_4 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_t_8), NULL); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1988; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1984
+      /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1989
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+      __pyx_t_4 = __Pyx_GetItemInt(__pyx_v_nt, -1, sizeof(long), PyInt_FromLong); if (!__pyx_t_4) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1989; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1985
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+    __pyx_t_4 = PyObject_RichCompare(__pyx_v_link_j, __pyx_t_8, Py_GT); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1990; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+    __Pyx_GOTREF(__pyx_t_4);
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+    __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_4); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1990; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_8 = PyNumber_Add(__pyx_t_2, __pyx_int_1); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1991; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_2 = PyTuple_New(3); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1991; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -59315,25 +59440,25 @@ static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_12add_instance_extract(
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+      __pyx_t_8 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_t_2), NULL); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1991; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_8); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1986; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+      __pyx_t_6 = __Pyx_PyObject_IsTrue(__pyx_t_8); if (unlikely(__pyx_t_6 < 0)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1991; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1987
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1992
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1988
+        /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1993
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1989
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+      __pyx_t_8 = __Pyx_GetName(__pyx_m, __pyx_n_s__span_inc); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1994; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+      __pyx_t_2 = __Pyx_GetItemInt(__pyx_v_nt, -1, sizeof(long), PyInt_FromLong); if (!__pyx_t_2) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1994; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1990
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1991
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1992
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1995
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1996
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+      __pyx_t_15 = PyTuple_New(3); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2002; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1998
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1999
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2013
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2014
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+    __pyx_t_15 = PyTuple_New(3); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2020; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2016
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+    __pyx_t_15 = PyTuple_New(3); if (unlikely(!__pyx_t_15)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2021; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-/* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1879
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1881
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1888
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1890
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1891
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2028
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-      #endif
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-          else {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2028; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2032
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2042
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-      #endif
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-      #endif
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2044
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2053
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2108
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2109
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-    /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2144
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-        /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2189
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2163
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     __pyx_t_6 = 0;
 
-    /* "/home/m/workspace/cdec/python/src/sa/features.pxi":32
+    /* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":32
  *         cdef FeatureVector scores = FeatureVector()
  *         for name, model in self.models:
  *             scores.set(name, model(ctx))             # <<<<<<<<<<<<<<
@@ -66975,7 +66925,7 @@ static struct __pyx_obj_3_sa_FeatureVector *__pyx_f_3_sa_6Scorer_score(struct __
   }
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/features.pxi":33
+  /* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":33
  *         for name, model in self.models:
  *             scores.set(name, model(ctx))
  *         return scores             # <<<<<<<<<<<<<<
@@ -67421,7 +67371,7 @@ static PyTypeObject __pyx_type_3_sa_IntList = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa_FeatureVector(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_FeatureVector(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa_FeatureVector *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -67436,8 +67386,8 @@ static PyObject *__pyx_tp_new_3_sa_FeatureVector(PyTypeObject *t, CYTHON_UNUSED
 
 static void __pyx_tp_dealloc_3_sa_FeatureVector(PyObject *o) {
   struct __pyx_obj_3_sa_FeatureVector *p = (struct __pyx_obj_3_sa_FeatureVector *)o;
-  Py_CLEAR(p->names);
-  Py_CLEAR(p->values);
+  Py_XDECREF(((PyObject *)p->names));
+  Py_XDECREF(((PyObject *)p->values));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -67657,7 +67607,7 @@ static PyObject *__pyx_sq_item_3_sa_Phrase(PyObject *o, Py_ssize_t i) {
   return r;
 }
 
-static PyObject *__pyx_getprop_3_sa_6Phrase_words(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_6Phrase_words(PyObject *o, void *x) {
   return __pyx_pw_3_sa_6Phrase_5words_1__get__(o);
 }
 
@@ -67849,10 +67799,10 @@ static PyObject *__pyx_tp_new_3_sa_Rule(PyTypeObject *t, PyObject *a, PyObject *
 
 static void __pyx_tp_dealloc_3_sa_Rule(PyObject *o) {
   struct __pyx_obj_3_sa_Rule *p = (struct __pyx_obj_3_sa_Rule *)o;
-  Py_CLEAR(p->f);
-  Py_CLEAR(p->e);
-  Py_CLEAR(p->scores);
-  Py_CLEAR(p->word_alignments);
+  Py_XDECREF(((PyObject *)p->f));
+  Py_XDECREF(((PyObject *)p->e));
+  Py_XDECREF(((PyObject *)p->scores));
+  Py_XDECREF(p->word_alignments);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -67892,11 +67842,11 @@ static int __pyx_tp_clear_3_sa_Rule(PyObject *o) {
   return 0;
 }
 
-static PyObject *__pyx_getprop_3_sa_4Rule_f(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_4Rule_f(PyObject *o, void *x) {
   return __pyx_pw_3_sa_4Rule_1f_1__get__(o);
 }
 
-static PyObject *__pyx_getprop_3_sa_4Rule_e(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_4Rule_e(PyObject *o, void *x) {
   return __pyx_pw_3_sa_4Rule_1e_1__get__(o);
 }
 
@@ -68068,7 +68018,7 @@ static PyTypeObject __pyx_type_3_sa_Rule = {
 };
 static struct __pyx_vtabstruct_3_sa_StringMap __pyx_vtable_3_sa_StringMap;
 
-static PyObject *__pyx_tp_new_3_sa_StringMap(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_StringMap(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa_StringMap *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -68271,11 +68221,11 @@ static PyObject *__pyx_tp_new_3_sa_DataArray(PyTypeObject *t, PyObject *a, PyObj
 
 static void __pyx_tp_dealloc_3_sa_DataArray(PyObject *o) {
   struct __pyx_obj_3_sa_DataArray *p = (struct __pyx_obj_3_sa_DataArray *)o;
-  Py_CLEAR(p->word2id);
-  Py_CLEAR(p->id2word);
-  Py_CLEAR(p->data);
-  Py_CLEAR(p->sent_id);
-  Py_CLEAR(p->sent_index);
+  Py_XDECREF(p->word2id);
+  Py_XDECREF(p->id2word);
+  Py_XDECREF(((PyObject *)p->data));
+  Py_XDECREF(((PyObject *)p->sent_id));
+  Py_XDECREF(((PyObject *)p->sent_index));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -68328,11 +68278,11 @@ static PyObject *__pyx_sq_item_3_sa_DataArray(PyObject *o, Py_ssize_t i) {
   return r;
 }
 
-static PyObject *__pyx_getprop_3_sa_9DataArray_word2id(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9DataArray_word2id(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9DataArray_7word2id_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9DataArray_word2id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9DataArray_word2id(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9DataArray_7word2id_3__set__(o, v);
   }
@@ -68341,11 +68291,11 @@ static int __pyx_setprop_3_sa_9DataArray_word2id(PyObject *o, PyObject *v, CYTHO
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_9DataArray_id2word(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9DataArray_id2word(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9DataArray_7id2word_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9DataArray_id2word(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9DataArray_id2word(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9DataArray_7id2word_3__set__(o, v);
   }
@@ -68354,11 +68304,11 @@ static int __pyx_setprop_3_sa_9DataArray_id2word(PyObject *o, PyObject *v, CYTHO
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_9DataArray_data(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9DataArray_data(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9DataArray_4data_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9DataArray_data(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9DataArray_data(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9DataArray_4data_3__set__(o, v);
   }
@@ -68367,11 +68317,11 @@ static int __pyx_setprop_3_sa_9DataArray_data(PyObject *o, PyObject *v, CYTHON_U
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_9DataArray_sent_id(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9DataArray_sent_id(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9DataArray_7sent_id_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9DataArray_sent_id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9DataArray_sent_id(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9DataArray_7sent_id_3__set__(o, v);
   }
@@ -68380,11 +68330,11 @@ static int __pyx_setprop_3_sa_9DataArray_sent_id(PyObject *o, PyObject *v, CYTHO
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_9DataArray_sent_index(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9DataArray_sent_index(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9DataArray_10sent_index_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9DataArray_sent_index(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9DataArray_sent_index(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9DataArray_10sent_index_3__set__(o, v);
   }
@@ -68589,8 +68539,8 @@ static PyObject *__pyx_tp_new_3_sa_Alignment(PyTypeObject *t, PyObject *a, PyObj
 
 static void __pyx_tp_dealloc_3_sa_Alignment(PyObject *o) {
   struct __pyx_obj_3_sa_Alignment *p = (struct __pyx_obj_3_sa_Alignment *)o;
-  Py_CLEAR(p->links);
-  Py_CLEAR(p->sent_index);
+  Py_XDECREF(((PyObject *)p->links));
+  Py_XDECREF(((PyObject *)p->sent_index));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -68807,14 +68757,14 @@ static PyObject *__pyx_tp_new_3_sa_BiLex(PyTypeObject *t, PyObject *a, PyObject
 
 static void __pyx_tp_dealloc_3_sa_BiLex(PyObject *o) {
   struct __pyx_obj_3_sa_BiLex *p = (struct __pyx_obj_3_sa_BiLex *)o;
-  Py_CLEAR(p->col1);
-  Py_CLEAR(p->col2);
-  Py_CLEAR(p->f_index);
-  Py_CLEAR(p->e_index);
-  Py_CLEAR(p->id2eword);
-  Py_CLEAR(p->id2fword);
-  Py_CLEAR(p->eword2id);
-  Py_CLEAR(p->fword2id);
+  Py_XDECREF(((PyObject *)p->col1));
+  Py_XDECREF(((PyObject *)p->col2));
+  Py_XDECREF(((PyObject *)p->f_index));
+  Py_XDECREF(((PyObject *)p->e_index));
+  Py_XDECREF(p->id2eword);
+  Py_XDECREF(p->id2fword);
+  Py_XDECREF(p->eword2id);
+  Py_XDECREF(p->fword2id);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -69044,7 +68994,7 @@ static PyTypeObject __pyx_type_3_sa_BiLex = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa_BitSetIterator(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_BitSetIterator(PyTypeObject *t, PyObject *a, PyObject *k) {
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
   return o;
@@ -69213,7 +69163,7 @@ static PyTypeObject __pyx_type_3_sa_BitSetIterator = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa_BitSet(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_BitSet(PyTypeObject *t, PyObject *a, PyObject *k) {
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
   if (__pyx_pw_3_sa_6BitSet_1__cinit__(o, __pyx_empty_tuple, NULL) < 0) {
@@ -69397,7 +69347,7 @@ static PyTypeObject __pyx_type_3_sa_BitSet = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa_VEBIterator(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_VEBIterator(PyTypeObject *t, PyObject *a, PyObject *k) {
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
   return o;
@@ -69767,8 +69717,8 @@ static PyObject *__pyx_tp_new_3_sa_LCP(PyTypeObject *t, PyObject *a, PyObject *k
 
 static void __pyx_tp_dealloc_3_sa_LCP(PyObject *o) {
   struct __pyx_obj_3_sa_LCP *p = (struct __pyx_obj_3_sa_LCP *)o;
-  Py_CLEAR(p->sa);
-  Py_CLEAR(p->lcp);
+  Py_XDECREF(((PyObject *)p->sa));
+  Py_XDECREF(((PyObject *)p->lcp));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -69956,7 +69906,7 @@ static PyTypeObject __pyx_type_3_sa_LCP = {
 };
 static struct __pyx_vtabstruct_3_sa_Alphabet __pyx_vtable_3_sa_Alphabet;
 
-static PyObject *__pyx_tp_new_3_sa_Alphabet(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_Alphabet(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa_Alphabet *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -69982,9 +69932,9 @@ static void __pyx_tp_dealloc_3_sa_Alphabet(PyObject *o) {
     --Py_REFCNT(o);
     PyErr_Restore(etype, eval, etb);
   }
-  Py_CLEAR(p->terminals);
-  Py_CLEAR(p->nonterminals);
-  Py_CLEAR(p->id2sym);
+  Py_XDECREF(((PyObject *)p->terminals));
+  Py_XDECREF(((PyObject *)p->nonterminals));
+  Py_XDECREF(((PyObject *)p->id2sym));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -70018,11 +69968,11 @@ static int __pyx_tp_clear_3_sa_Alphabet(PyObject *o) {
   return 0;
 }
 
-static PyObject *__pyx_getprop_3_sa_8Alphabet_terminals(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_8Alphabet_terminals(PyObject *o, void *x) {
   return __pyx_pw_3_sa_8Alphabet_9terminals_1__get__(o);
 }
 
-static PyObject *__pyx_getprop_3_sa_8Alphabet_nonterminals(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_8Alphabet_nonterminals(PyObject *o, void *x) {
   return __pyx_pw_3_sa_8Alphabet_12nonterminals_1__get__(o);
 }
 
@@ -70394,8 +70344,8 @@ static PyObject *__pyx_tp_new_3_sa_Precomputation(PyTypeObject *t, PyObject *a,
 
 static void __pyx_tp_dealloc_3_sa_Precomputation(PyObject *o) {
   struct __pyx_obj_3_sa_Precomputation *p = (struct __pyx_obj_3_sa_Precomputation *)o;
-  Py_CLEAR(p->precomputed_index);
-  Py_CLEAR(p->precomputed_collocations);
+  Py_XDECREF(p->precomputed_index);
+  Py_XDECREF(p->precomputed_collocations);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -70602,9 +70552,9 @@ static PyObject *__pyx_tp_new_3_sa_SuffixArray(PyTypeObject *t, PyObject *a, PyO
 
 static void __pyx_tp_dealloc_3_sa_SuffixArray(PyObject *o) {
   struct __pyx_obj_3_sa_SuffixArray *p = (struct __pyx_obj_3_sa_SuffixArray *)o;
-  Py_CLEAR(p->darray);
-  Py_CLEAR(p->sa);
-  Py_CLEAR(p->ha);
+  Py_XDECREF(((PyObject *)p->darray));
+  Py_XDECREF(((PyObject *)p->sa));
+  Py_XDECREF(((PyObject *)p->ha));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -70810,7 +70760,7 @@ static PyTypeObject __pyx_type_3_sa_SuffixArray = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa_TrieNode(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_TrieNode(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa_TrieNode *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -70824,7 +70774,7 @@ static PyObject *__pyx_tp_new_3_sa_TrieNode(PyTypeObject *t, CYTHON_UNUSED PyObj
 
 static void __pyx_tp_dealloc_3_sa_TrieNode(PyObject *o) {
   struct __pyx_obj_3_sa_TrieNode *p = (struct __pyx_obj_3_sa_TrieNode *)o;
-  Py_CLEAR(p->children);
+  Py_XDECREF(p->children);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -70846,11 +70796,11 @@ static int __pyx_tp_clear_3_sa_TrieNode(PyObject *o) {
   return 0;
 }
 
-static PyObject *__pyx_getprop_3_sa_8TrieNode_children(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_8TrieNode_children(PyObject *o, void *x) {
   return __pyx_pw_3_sa_8TrieNode_8children_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_8TrieNode_children(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_8TrieNode_children(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_8TrieNode_8children_3__set__(o, v);
   }
@@ -71038,9 +70988,9 @@ static PyObject *__pyx_tp_new_3_sa_ExtendedTrieNode(PyTypeObject *t, PyObject *a
 
 static void __pyx_tp_dealloc_3_sa_ExtendedTrieNode(PyObject *o) {
   struct __pyx_obj_3_sa_ExtendedTrieNode *p = (struct __pyx_obj_3_sa_ExtendedTrieNode *)o;
-  Py_CLEAR(p->phrase);
-  Py_CLEAR(p->phrase_location);
-  Py_CLEAR(p->suffix_link);
+  Py_XDECREF(p->phrase);
+  Py_XDECREF(p->phrase_location);
+  Py_XDECREF(p->suffix_link);
   __pyx_tp_dealloc_3_sa_TrieNode(o);
 }
 
@@ -71076,11 +71026,11 @@ static int __pyx_tp_clear_3_sa_ExtendedTrieNode(PyObject *o) {
   return 0;
 }
 
-static PyObject *__pyx_getprop_3_sa_16ExtendedTrieNode_phrase(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_16ExtendedTrieNode_phrase(PyObject *o, void *x) {
   return __pyx_pw_3_sa_16ExtendedTrieNode_6phrase_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_16ExtendedTrieNode_phrase(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_16ExtendedTrieNode_phrase(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_16ExtendedTrieNode_6phrase_3__set__(o, v);
   }
@@ -71089,11 +71039,11 @@ static int __pyx_setprop_3_sa_16ExtendedTrieNode_phrase(PyObject *o, PyObject *v
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_16ExtendedTrieNode_phrase_location(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_16ExtendedTrieNode_phrase_location(PyObject *o, void *x) {
   return __pyx_pw_3_sa_16ExtendedTrieNode_15phrase_location_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_16ExtendedTrieNode_phrase_location(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_16ExtendedTrieNode_phrase_location(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_16ExtendedTrieNode_15phrase_location_3__set__(o, v);
   }
@@ -71102,11 +71052,11 @@ static int __pyx_setprop_3_sa_16ExtendedTrieNode_phrase_location(PyObject *o, Py
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_16ExtendedTrieNode_suffix_link(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_16ExtendedTrieNode_suffix_link(PyObject *o, void *x) {
   return __pyx_pw_3_sa_16ExtendedTrieNode_11suffix_link_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_16ExtendedTrieNode_suffix_link(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_16ExtendedTrieNode_suffix_link(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_16ExtendedTrieNode_11suffix_link_3__set__(o, v);
   }
@@ -71294,7 +71244,7 @@ static PyObject *__pyx_tp_new_3_sa_TrieTable(PyTypeObject *t, PyObject *a, PyObj
 
 static void __pyx_tp_dealloc_3_sa_TrieTable(PyObject *o) {
   struct __pyx_obj_3_sa_TrieTable *p = (struct __pyx_obj_3_sa_TrieTable *)o;
-  Py_CLEAR(p->root);
+  Py_XDECREF(p->root);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -71316,11 +71266,11 @@ static int __pyx_tp_clear_3_sa_TrieTable(PyObject *o) {
   return 0;
 }
 
-static PyObject *__pyx_getprop_3_sa_9TrieTable_extended(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9TrieTable_extended(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9TrieTable_8extended_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9TrieTable_extended(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9TrieTable_extended(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9TrieTable_8extended_3__set__(o, v);
   }
@@ -71330,11 +71280,11 @@ static int __pyx_setprop_3_sa_9TrieTable_extended(PyObject *o, PyObject *v, CYTH
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_9TrieTable_count(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9TrieTable_count(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9TrieTable_5count_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9TrieTable_count(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9TrieTable_count(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9TrieTable_5count_3__set__(o, v);
   }
@@ -71344,11 +71294,11 @@ static int __pyx_setprop_3_sa_9TrieTable_count(PyObject *o, PyObject *v, CYTHON_
   }
 }
 
-static PyObject *__pyx_getprop_3_sa_9TrieTable_root(PyObject *o, CYTHON_UNUSED void *x) {
+static PyObject *__pyx_getprop_3_sa_9TrieTable_root(PyObject *o, void *x) {
   return __pyx_pw_3_sa_9TrieTable_4root_1__get__(o);
 }
 
-static int __pyx_setprop_3_sa_9TrieTable_root(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) {
+static int __pyx_setprop_3_sa_9TrieTable_root(PyObject *o, PyObject *v, void *x) {
   if (v) {
     return __pyx_pw_3_sa_9TrieTable_4root_3__set__(o, v);
   }
@@ -71538,7 +71488,7 @@ static PyObject *__pyx_tp_new_3_sa_PhraseLocation(PyTypeObject *t, PyObject *a,
 
 static void __pyx_tp_dealloc_3_sa_PhraseLocation(PyObject *o) {
   struct __pyx_obj_3_sa_PhraseLocation *p = (struct __pyx_obj_3_sa_PhraseLocation *)o;
-  Py_CLEAR(p->arr);
+  Py_XDECREF(((PyObject *)p->arr));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -71732,7 +71682,7 @@ static PyObject *__pyx_tp_new_3_sa_Sampler(PyTypeObject *t, PyObject *a, PyObjec
 
 static void __pyx_tp_dealloc_3_sa_Sampler(PyObject *o) {
   struct __pyx_obj_3_sa_Sampler *p = (struct __pyx_obj_3_sa_Sampler *)o;
-  Py_CLEAR(p->sa);
+  Py_XDECREF(((PyObject *)p->sa));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -71952,30 +71902,30 @@ static PyObject *__pyx_tp_new_3_sa_HieroCachingRuleFactory(PyTypeObject *t, PyOb
 
 static void __pyx_tp_dealloc_3_sa_HieroCachingRuleFactory(PyObject *o) {
   struct __pyx_obj_3_sa_HieroCachingRuleFactory *p = (struct __pyx_obj_3_sa_HieroCachingRuleFactory *)o;
-  Py_CLEAR(p->rules);
-  Py_CLEAR(p->sampler);
-  Py_CLEAR(p->scorer);
-  Py_CLEAR(p->precomputed_index);
-  Py_CLEAR(p->precomputed_collocations);
-  Py_CLEAR(p->precompute_file);
-  Py_CLEAR(p->max_rank);
-  Py_CLEAR(p->prev_norm_prefix);
-  Py_CLEAR(p->fsa);
-  Py_CLEAR(p->fda);
-  Py_CLEAR(p->eda);
-  Py_CLEAR(p->alignment);
-  Py_CLEAR(p->eid2symid);
-  Py_CLEAR(p->fid2symid);
-  Py_CLEAR(p->findexes);
-  Py_CLEAR(p->findexes1);
-  Py_CLEAR(p->samples_f);
-  Py_CLEAR(p->phrases_f);
-  Py_CLEAR(p->phrases_e);
-  Py_CLEAR(p->phrases_fe);
-  Py_CLEAR(p->phrases_al);
-  Py_CLEAR(p->bilex_f);
-  Py_CLEAR(p->bilex_e);
-  Py_CLEAR(p->bilex_fe);
+  Py_XDECREF(((PyObject *)p->rules));
+  Py_XDECREF(((PyObject *)p->sampler));
+  Py_XDECREF(((PyObject *)p->scorer));
+  Py_XDECREF(p->precomputed_index);
+  Py_XDECREF(p->precomputed_collocations);
+  Py_XDECREF(p->precompute_file);
+  Py_XDECREF(p->max_rank);
+  Py_XDECREF(p->prev_norm_prefix);
+  Py_XDECREF(((PyObject *)p->fsa));
+  Py_XDECREF(((PyObject *)p->fda));
+  Py_XDECREF(((PyObject *)p->eda));
+  Py_XDECREF(((PyObject *)p->alignment));
+  Py_XDECREF(((PyObject *)p->eid2symid));
+  Py_XDECREF(((PyObject *)p->fid2symid));
+  Py_XDECREF(((PyObject *)p->findexes));
+  Py_XDECREF(((PyObject *)p->findexes1));
+  Py_XDECREF(p->samples_f);
+  Py_XDECREF(p->phrases_f);
+  Py_XDECREF(p->phrases_e);
+  Py_XDECREF(p->phrases_fe);
+  Py_XDECREF(p->phrases_al);
+  Py_XDECREF(p->bilex_f);
+  Py_XDECREF(p->bilex_e);
+  Py_XDECREF(p->bilex_fe);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -72312,7 +72262,7 @@ static PyTypeObject __pyx_type_3_sa_HieroCachingRuleFactory = {
 };
 static struct __pyx_vtabstruct_3_sa_Scorer __pyx_vtable_3_sa_Scorer;
 
-static PyObject *__pyx_tp_new_3_sa_Scorer(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa_Scorer(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa_Scorer *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -72324,7 +72274,7 @@ static PyObject *__pyx_tp_new_3_sa_Scorer(PyTypeObject *t, CYTHON_UNUSED PyObjec
 
 static void __pyx_tp_dealloc_3_sa_Scorer(PyObject *o) {
   struct __pyx_obj_3_sa_Scorer *p = (struct __pyx_obj_3_sa_Scorer *)o;
-  Py_CLEAR(p->models);
+  Py_XDECREF(p->models);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -72504,7 +72454,7 @@ static PyTypeObject __pyx_type_3_sa_Scorer = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct____iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct____iter__(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct____iter__ *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -72515,7 +72465,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct____iter__(PyTypeObject *t,
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct____iter__(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct____iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct____iter__ *)o;
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -72695,7 +72645,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct____iter__ = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_1_read_bitext(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_1_read_bitext(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_1_read_bitext *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -72706,7 +72656,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_1_read_bitext(PyTypeObject
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_1_read_bitext(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_1_read_bitext *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1_read_bitext *)o;
-  Py_CLEAR(p->__pyx_v_fp);
+  Py_XDECREF(p->__pyx_v_fp);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -72886,7 +72836,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1_read_bitext = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_2_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -72899,9 +72849,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_genexpr(PyTypeObject *t,
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_2_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_line);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_line);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -73093,7 +73043,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_3_compute_stats(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_3_compute_stats(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_3_compute_stats *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -73109,12 +73059,12 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_3_compute_stats(PyTypeObje
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_3_compute_stats(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_3_compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct_3_compute_stats *)o;
-  Py_CLEAR(p->__pyx_v_ngram);
-  Py_CLEAR(p->__pyx_v_ngram_start);
-  Py_CLEAR(p->__pyx_v_ngram_starts);
-  Py_CLEAR(p->__pyx_v_run_start);
-  Py_CLEAR(p->__pyx_v_self);
-  Py_CLEAR(p->__pyx_v_veb);
+  Py_XDECREF(((PyObject *)p->__pyx_v_ngram));
+  Py_XDECREF(((PyObject *)p->__pyx_v_ngram_start));
+  Py_XDECREF(((PyObject *)p->__pyx_v_ngram_starts));
+  Py_XDECREF(((PyObject *)p->__pyx_v_run_start));
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
+  Py_XDECREF(((PyObject *)p->__pyx_v_veb));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -73324,7 +73274,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_3_compute_stats = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_4_make_lattice(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_4_make_lattice(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_4_make_lattice *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -73336,8 +73286,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_4_make_lattice(PyTypeObjec
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_4_make_lattice(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_4_make_lattice *p = (struct __pyx_obj_3_sa___pyx_scope_struct_4_make_lattice *)o;
-  Py_CLEAR(p->__pyx_v_word_ids);
-  Py_CLEAR(p->__pyx_v_words);
+  Py_XDECREF(p->__pyx_v_word_ids);
+  Py_XDECREF(p->__pyx_v_words);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -73523,7 +73473,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_4_make_lattice = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_5_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_5_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_5_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -73536,9 +73486,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_5_genexpr(PyTypeObject *t,
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_5_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_5_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_5_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_word);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_word);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -73730,7 +73680,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_5_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_6_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_6_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_6_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -73743,9 +73693,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_6_genexpr(PyTypeObject *t,
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_6_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_6_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_6_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_word);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_word);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -73937,7 +73887,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_6_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_7_decode_lattice(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_7_decode_lattice(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_7_decode_lattice *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -73948,7 +73898,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_7_decode_lattice(PyTypeObj
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_7_decode_lattice(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_7_decode_lattice *p = (struct __pyx_obj_3_sa___pyx_scope_struct_7_decode_lattice *)o;
-  Py_CLEAR(p->__pyx_v_lattice);
+  Py_XDECREF(p->__pyx_v_lattice);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -74128,7 +74078,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_7_decode_lattice = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_8_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_8_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_8_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -74147,15 +74097,15 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_8_genexpr(PyTypeObject *t,
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_8_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_8_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_8_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_arc);
-  Py_CLEAR(p->__pyx_v_dist);
-  Py_CLEAR(p->__pyx_v_node);
-  Py_CLEAR(p->__pyx_v_sym);
-  Py_CLEAR(p->__pyx_v_weight);
-  Py_CLEAR(p->__pyx_t_0);
-  Py_CLEAR(p->__pyx_t_3);
-  Py_CLEAR(p->__pyx_t_4);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_arc);
+  Py_XDECREF(p->__pyx_v_dist);
+  Py_XDECREF(p->__pyx_v_node);
+  Py_XDECREF(p->__pyx_v_sym);
+  Py_XDECREF(p->__pyx_v_weight);
+  Py_XDECREF(p->__pyx_t_0);
+  Py_XDECREF(p->__pyx_t_3);
+  Py_XDECREF(p->__pyx_t_4);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -74383,7 +74333,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_8_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_9_decode_sentence(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_9_decode_sentence(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_9_decode_sentence *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -74394,7 +74344,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_9_decode_sentence(PyTypeOb
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_9_decode_sentence(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_9_decode_sentence *p = (struct __pyx_obj_3_sa___pyx_scope_struct_9_decode_sentence *)o;
-  Py_CLEAR(p->__pyx_v_lattice);
+  Py_XDECREF(p->__pyx_v_lattice);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -74574,7 +74524,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_9_decode_sentence = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_10_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_10_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_10_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -74588,10 +74538,10 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_10_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_10_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_10_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_10_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v__);
-  Py_CLEAR(p->__pyx_v_sym);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v__);
+  Py_XDECREF(p->__pyx_v_sym);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -74789,7 +74739,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_10_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_11_encode_words(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_11_encode_words(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_11_encode_words *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -74800,7 +74750,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_11_encode_words(PyTypeObje
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_11_encode_words(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_11_encode_words *p = (struct __pyx_obj_3_sa___pyx_scope_struct_11_encode_words *)o;
-  Py_CLEAR(p->__pyx_v_words);
+  Py_XDECREF(p->__pyx_v_words);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -74980,7 +74930,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_11_encode_words = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_12_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_12_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_12_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -74993,9 +74943,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_12_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_12_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_12_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_12_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_word);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_word);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -75187,7 +75137,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_12_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_13_decode_words(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_13_decode_words(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_13_decode_words *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -75198,7 +75148,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_13_decode_words(PyTypeObje
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_13_decode_words(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_13_decode_words *p = (struct __pyx_obj_3_sa___pyx_scope_struct_13_decode_words *)o;
-  Py_CLEAR(p->__pyx_v_syms);
+  Py_XDECREF(p->__pyx_v_syms);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -75378,7 +75328,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_13_decode_words = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_14_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_14_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_14_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -75391,9 +75341,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_14_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_14_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_14_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_14_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_sym);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_sym);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -75585,7 +75535,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_14_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_15___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_15___iter__(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_15___iter__ *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -75596,7 +75546,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_15___iter__(PyTypeObject *
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_15___iter__(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_15___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_15___iter__ *)o;
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -75776,7 +75726,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_15___iter__ = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_16___str__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_16___str__(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_16___str__ *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -75787,7 +75737,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_16___str__(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_16___str__(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_16___str__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_16___str__ *)o;
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -75967,7 +75917,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_16___str__ = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_17_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_17_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_17_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -75980,9 +75930,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_17_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_17_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_17_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_17_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_a);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_a);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -76174,7 +76124,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_17_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_18_alignments(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_18_alignments(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_18_alignments *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -76187,9 +76137,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_18_alignments(PyTypeObject
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_18_alignments(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_18_alignments *p = (struct __pyx_obj_3_sa___pyx_scope_struct_18_alignments *)o;
-  Py_CLEAR(p->__pyx_v_point);
-  Py_CLEAR(p->__pyx_v_self);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(p->__pyx_v_point);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -76381,7 +76331,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_18_alignments = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_19_input(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_19_input(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_19_input *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -76407,6 +76357,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_19_input(PyTypeObject *t,
   p->__pyx_v_genexpr = 0;
   p->__pyx_v_hiero_phrase = 0;
   p->__pyx_v_input_match = 0;
+  p->__pyx_v_intersect_start_time = 0;
+  p->__pyx_v_intersect_stop_time = 0;
   p->__pyx_v_is_shadow_path = 0;
   p->__pyx_v_key = 0;
   p->__pyx_v_lex_i = 0;
@@ -76438,69 +76390,71 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_19_input(PyTypeObject *t,
   p->__pyx_v_xcat_index = 0;
   p->__pyx_v_xnode = 0;
   p->__pyx_v_xroot = 0;
-  p->__pyx_t_1 = 0;
+  p->__pyx_t_2 = 0;
+  p->__pyx_t_3 = 0;
   p->__pyx_t_4 = 0;
-  p->__pyx_t_5 = 0;
   return o;
 }
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_19_input(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_19_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_19_input *)o;
-  Py_CLEAR(p->__pyx_v_alignment);
-  Py_CLEAR(p->__pyx_v_als);
-  Py_CLEAR(p->__pyx_v_alslist);
-  Py_CLEAR(p->__pyx_v_chunklen);
-  Py_CLEAR(p->__pyx_v_count);
-  Py_CLEAR(p->__pyx_v_e);
-  Py_CLEAR(p->__pyx_v_elist);
-  Py_CLEAR(p->__pyx_v_extract);
-  Py_CLEAR(p->__pyx_v_extract_start);
-  Py_CLEAR(p->__pyx_v_extract_stop);
-  Py_CLEAR(p->__pyx_v_extracts);
-  Py_CLEAR(p->__pyx_v_f);
-  Py_CLEAR(p->__pyx_v_f_syms);
-  Py_CLEAR(p->__pyx_v_fcount);
-  Py_CLEAR(p->__pyx_v_fphrases);
-  Py_CLEAR(p->__pyx_v_frontier);
-  Py_CLEAR(p->__pyx_v_frontier_nodes);
-  Py_CLEAR(p->__pyx_v_fwords);
-  Py_CLEAR(p->__pyx_v_genexpr);
-  Py_CLEAR(p->__pyx_v_hiero_phrase);
-  Py_CLEAR(p->__pyx_v_input_match);
-  Py_CLEAR(p->__pyx_v_is_shadow_path);
-  Py_CLEAR(p->__pyx_v_key);
-  Py_CLEAR(p->__pyx_v_lex_i);
-  Py_CLEAR(p->__pyx_v_lex_j);
-  Py_CLEAR(p->__pyx_v_loc);
-  Py_CLEAR(p->__pyx_v_locs);
-  Py_CLEAR(p->__pyx_v_max_locs);
-  Py_CLEAR(p->__pyx_v_meta);
-  Py_CLEAR(p->__pyx_v_new_frontier);
-  Py_CLEAR(p->__pyx_v_new_node);
-  Py_CLEAR(p->__pyx_v_next_states);
-  Py_CLEAR(p->__pyx_v_node);
-  Py_CLEAR(p->__pyx_v_nodes_isteps_away_buffer);
-  Py_CLEAR(p->__pyx_v_pathlen);
-  Py_CLEAR(p->__pyx_v_phrase);
-  Py_CLEAR(p->__pyx_v_phrase_location);
-  Py_CLEAR(p->__pyx_v_prefix);
-  Py_CLEAR(p->__pyx_v_reachable_buffer);
-  Py_CLEAR(p->__pyx_v_sa_range);
-  Py_CLEAR(p->__pyx_v_sample);
-  Py_CLEAR(p->__pyx_v_scores);
-  Py_CLEAR(p->__pyx_v_seen_phrases);
-  Py_CLEAR(p->__pyx_v_self);
-  Py_CLEAR(p->__pyx_v_spanlen);
-  Py_CLEAR(p->__pyx_v_stop_time);
-  Py_CLEAR(p->__pyx_v_suffix_link);
-  Py_CLEAR(p->__pyx_v_suffix_link_xcat_index);
-  Py_CLEAR(p->__pyx_v_word_id);
-  Py_CLEAR(p->__pyx_v_xcat_index);
-  Py_CLEAR(p->__pyx_v_xnode);
-  Py_CLEAR(p->__pyx_v_xroot);
-  Py_CLEAR(p->__pyx_t_1);
-  Py_CLEAR(p->__pyx_t_4);
-  Py_CLEAR(p->__pyx_t_5);
+  Py_XDECREF(p->__pyx_v_alignment);
+  Py_XDECREF(p->__pyx_v_als);
+  Py_XDECREF(p->__pyx_v_alslist);
+  Py_XDECREF(((PyObject *)p->__pyx_v_chunklen));
+  Py_XDECREF(p->__pyx_v_count);
+  Py_XDECREF(p->__pyx_v_e);
+  Py_XDECREF(p->__pyx_v_elist);
+  Py_XDECREF(p->__pyx_v_extract);
+  Py_XDECREF(p->__pyx_v_extract_start);
+  Py_XDECREF(p->__pyx_v_extract_stop);
+  Py_XDECREF(((PyObject *)p->__pyx_v_extracts));
+  Py_XDECREF(p->__pyx_v_f);
+  Py_XDECREF(((PyObject *)p->__pyx_v_f_syms));
+  Py_XDECREF(p->__pyx_v_fcount);
+  Py_XDECREF(p->__pyx_v_fphrases);
+  Py_XDECREF(((PyObject *)p->__pyx_v_frontier));
+  Py_XDECREF(p->__pyx_v_frontier_nodes);
+  Py_XDECREF(p->__pyx_v_fwords);
+  Py_XDECREF(p->__pyx_v_genexpr);
+  Py_XDECREF(((PyObject *)p->__pyx_v_hiero_phrase));
+  Py_XDECREF(p->__pyx_v_input_match);
+  Py_XDECREF(p->__pyx_v_intersect_start_time);
+  Py_XDECREF(p->__pyx_v_intersect_stop_time);
+  Py_XDECREF(p->__pyx_v_is_shadow_path);
+  Py_XDECREF(((PyObject *)p->__pyx_v_key));
+  Py_XDECREF(p->__pyx_v_lex_i);
+  Py_XDECREF(p->__pyx_v_lex_j);
+  Py_XDECREF(p->__pyx_v_loc);
+  Py_XDECREF(((PyObject *)p->__pyx_v_locs));
+  Py_XDECREF(p->__pyx_v_max_locs);
+  Py_XDECREF(p->__pyx_v_meta);
+  Py_XDECREF(((PyObject *)p->__pyx_v_new_frontier));
+  Py_XDECREF(p->__pyx_v_new_node);
+  Py_XDECREF(((PyObject *)p->__pyx_v_next_states));
+  Py_XDECREF(p->__pyx_v_node);
+  Py_XDECREF(((PyObject *)p->__pyx_v_nodes_isteps_away_buffer));
+  Py_XDECREF(p->__pyx_v_pathlen);
+  Py_XDECREF(p->__pyx_v_phrase);
+  Py_XDECREF(((PyObject *)p->__pyx_v_phrase_location));
+  Py_XDECREF(p->__pyx_v_prefix);
+  Py_XDECREF(((PyObject *)p->__pyx_v_reachable_buffer));
+  Py_XDECREF(p->__pyx_v_sa_range);
+  Py_XDECREF(((PyObject *)p->__pyx_v_sample));
+  Py_XDECREF(((PyObject *)p->__pyx_v_scores));
+  Py_XDECREF(((PyObject *)p->__pyx_v_seen_phrases));
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
+  Py_XDECREF(p->__pyx_v_spanlen);
+  Py_XDECREF(p->__pyx_v_stop_time);
+  Py_XDECREF(p->__pyx_v_suffix_link);
+  Py_XDECREF(p->__pyx_v_suffix_link_xcat_index);
+  Py_XDECREF(p->__pyx_v_word_id);
+  Py_XDECREF(p->__pyx_v_xcat_index);
+  Py_XDECREF(p->__pyx_v_xnode);
+  Py_XDECREF(p->__pyx_v_xroot);
+  Py_XDECREF(p->__pyx_t_2);
+  Py_XDECREF(p->__pyx_t_3);
+  Py_XDECREF(p->__pyx_t_4);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -76570,6 +76524,12 @@ static int __pyx_tp_traverse_3_sa___pyx_scope_struct_19_input(PyObject *o, visit
   if (p->__pyx_v_input_match) {
     e = (*v)(p->__pyx_v_input_match, a); if (e) return e;
   }
+  if (p->__pyx_v_intersect_start_time) {
+    e = (*v)(p->__pyx_v_intersect_start_time, a); if (e) return e;
+  }
+  if (p->__pyx_v_intersect_stop_time) {
+    e = (*v)(p->__pyx_v_intersect_stop_time, a); if (e) return e;
+  }
   if (p->__pyx_v_is_shadow_path) {
     e = (*v)(p->__pyx_v_is_shadow_path, a); if (e) return e;
   }
@@ -76663,15 +76623,15 @@ static int __pyx_tp_traverse_3_sa___pyx_scope_struct_19_input(PyObject *o, visit
   if (p->__pyx_v_xroot) {
     e = (*v)(p->__pyx_v_xroot, a); if (e) return e;
   }
-  if (p->__pyx_t_1) {
-    e = (*v)(p->__pyx_t_1, a); if (e) return e;
+  if (p->__pyx_t_2) {
+    e = (*v)(p->__pyx_t_2, a); if (e) return e;
+  }
+  if (p->__pyx_t_3) {
+    e = (*v)(p->__pyx_t_3, a); if (e) return e;
   }
   if (p->__pyx_t_4) {
     e = (*v)(p->__pyx_t_4, a); if (e) return e;
   }
-  if (p->__pyx_t_5) {
-    e = (*v)(p->__pyx_t_5, a); if (e) return e;
-  }
   return 0;
 }
 
@@ -76741,6 +76701,12 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct_19_input(PyObject *o) {
   tmp = ((PyObject*)p->__pyx_v_input_match);
   p->__pyx_v_input_match = Py_None; Py_INCREF(Py_None);
   Py_XDECREF(tmp);
+  tmp = ((PyObject*)p->__pyx_v_intersect_start_time);
+  p->__pyx_v_intersect_start_time = Py_None; Py_INCREF(Py_None);
+  Py_XDECREF(tmp);
+  tmp = ((PyObject*)p->__pyx_v_intersect_stop_time);
+  p->__pyx_v_intersect_stop_time = Py_None; Py_INCREF(Py_None);
+  Py_XDECREF(tmp);
   tmp = ((PyObject*)p->__pyx_v_is_shadow_path);
   p->__pyx_v_is_shadow_path = Py_None; Py_INCREF(Py_None);
   Py_XDECREF(tmp);
@@ -76834,15 +76800,15 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct_19_input(PyObject *o) {
   tmp = ((PyObject*)p->__pyx_v_xroot);
   p->__pyx_v_xroot = Py_None; Py_INCREF(Py_None);
   Py_XDECREF(tmp);
-  tmp = ((PyObject*)p->__pyx_t_1);
-  p->__pyx_t_1 = Py_None; Py_INCREF(Py_None);
+  tmp = ((PyObject*)p->__pyx_t_2);
+  p->__pyx_t_2 = Py_None; Py_INCREF(Py_None);
+  Py_XDECREF(tmp);
+  tmp = ((PyObject*)p->__pyx_t_3);
+  p->__pyx_t_3 = Py_None; Py_INCREF(Py_None);
   Py_XDECREF(tmp);
   tmp = ((PyObject*)p->__pyx_t_4);
   p->__pyx_t_4 = Py_None; Py_INCREF(Py_None);
   Py_XDECREF(tmp);
-  tmp = ((PyObject*)p->__pyx_t_5);
-  p->__pyx_t_5 = Py_None; Py_INCREF(Py_None);
-  Py_XDECREF(tmp);
   return 0;
 }
 
@@ -77004,7 +76970,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_19_input = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_20_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_20_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_20_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -77017,9 +76983,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_20_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_20_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_20_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_20_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_word);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_word);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -77211,7 +77177,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_20_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_21_add_instance(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_21_add_instance(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_21_add_instance *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -77232,17 +77198,17 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_21_add_instance(PyTypeObje
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_21_add_instance(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_21_add_instance *p = (struct __pyx_obj_3_sa___pyx_scope_struct_21_add_instance *)o;
-  Py_CLEAR(p->__pyx_v_al);
-  Py_CLEAR(p->__pyx_v_cover);
-  Py_CLEAR(p->__pyx_v_e_nt_cover);
-  Py_CLEAR(p->__pyx_v_e_words);
-  Py_CLEAR(p->__pyx_v_ef_span);
-  Py_CLEAR(p->__pyx_v_extract);
-  Py_CLEAR(p->__pyx_v_f_len);
-  Py_CLEAR(p->__pyx_v_f_words);
-  Py_CLEAR(p->__pyx_v_fe_span);
-  Py_CLEAR(p->__pyx_v_rules);
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(p->__pyx_v_al);
+  Py_XDECREF(p->__pyx_v_cover);
+  Py_XDECREF(p->__pyx_v_e_nt_cover);
+  Py_XDECREF(p->__pyx_v_e_words);
+  Py_XDECREF(p->__pyx_v_ef_span);
+  Py_XDECREF(p->__pyx_v_extract);
+  Py_XDECREF(p->__pyx_v_f_len);
+  Py_XDECREF(p->__pyx_v_f_words);
+  Py_XDECREF(p->__pyx_v_fe_span);
+  Py_XDECREF(p->__pyx_v_rules);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -77482,7 +77448,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_21_add_instance = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_22_form_rule(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_22_form_rule(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_22_form_rule *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -77494,8 +77460,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_22_form_rule(PyTypeObject
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_22_form_rule(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_22_form_rule *p = (struct __pyx_obj_3_sa___pyx_scope_struct_22_form_rule *)o;
-  Py_CLEAR(p->__pyx_v_links);
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(p->__pyx_v_links);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -77681,7 +77647,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_22_form_rule = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_23_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_23_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_23_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -77695,10 +77661,10 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_23_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_23_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_23_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_23_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_i);
-  Py_CLEAR(p->__pyx_v_j);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_i);
+  Py_XDECREF(p->__pyx_v_j);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -77896,7 +77862,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_23_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_24_fmt_rule(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_24_fmt_rule(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_24_fmt_rule *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -77908,8 +77874,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_24_fmt_rule(PyTypeObject *
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_24_fmt_rule(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_24_fmt_rule *p = (struct __pyx_obj_3_sa___pyx_scope_struct_24_fmt_rule *)o;
-  Py_CLEAR(p->__pyx_v_a);
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(p->__pyx_v_a);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -78095,7 +78061,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_24_fmt_rule = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_25_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_25_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_25_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -78108,9 +78074,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_25_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_25_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_25_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_25_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_packed);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_packed);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -78302,7 +78268,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_25_genexpr = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_26_get_f_phrases(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_26_get_f_phrases(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_26_get_f_phrases *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -78317,11 +78283,11 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_26_get_f_phrases(PyTypeObj
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_26_get_f_phrases(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_26_get_f_phrases *p = (struct __pyx_obj_3_sa___pyx_scope_struct_26_get_f_phrases *)o;
-  Py_CLEAR(p->__pyx_v_extract);
-  Py_CLEAR(p->__pyx_v_f_len);
-  Py_CLEAR(p->__pyx_v_f_words);
-  Py_CLEAR(p->__pyx_v_phrases);
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(p->__pyx_v_extract);
+  Py_XDECREF(p->__pyx_v_f_len);
+  Py_XDECREF(p->__pyx_v_f_words);
+  Py_XDECREF(p->__pyx_v_phrases);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -78525,7 +78491,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_26_get_f_phrases = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_27___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_27___iter__(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_27___iter__ *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -78536,7 +78502,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_27___iter__(PyTypeObject *
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_27___iter__(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_27___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_27___iter__ *)o;
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -78716,7 +78682,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_27___iter__ = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_28___str__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_28___str__(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_28___str__ *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -78727,7 +78693,7 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_28___str__(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_28___str__(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_28___str__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_28___str__ *)o;
-  Py_CLEAR(p->__pyx_v_self);
+  Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -78907,7 +78873,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_28___str__ = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_29_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_29_genexpr(PyTypeObject *t, PyObject *a, PyObject *k) {
   struct __pyx_obj_3_sa___pyx_scope_struct_29_genexpr *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
@@ -78920,9 +78886,9 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_29_genexpr(PyTypeObject *t
 
 static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_29_genexpr(PyObject *o) {
   struct __pyx_obj_3_sa___pyx_scope_struct_29_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_29_genexpr *)o;
-  Py_CLEAR(p->__pyx_outer_scope);
-  Py_CLEAR(p->__pyx_v_feat);
-  Py_CLEAR(p->__pyx_t_0);
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_feat);
+  Py_XDECREF(p->__pyx_t_0);
   (*Py_TYPE(o)->tp_free)(o);
 }
 
@@ -79165,18 +79131,19 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
   {&__pyx_kp_s_131, __pyx_k_131, sizeof(__pyx_k_131), 0, 0, 1, 0},
   {&__pyx_kp_s_132, __pyx_k_132, sizeof(__pyx_k_132), 0, 0, 1, 0},
   {&__pyx_kp_s_133, __pyx_k_133, sizeof(__pyx_k_133), 0, 0, 1, 0},
-  {&__pyx_kp_s_136, __pyx_k_136, sizeof(__pyx_k_136), 0, 0, 1, 0},
+  {&__pyx_kp_s_134, __pyx_k_134, sizeof(__pyx_k_134), 0, 0, 1, 0},
   {&__pyx_kp_s_137, __pyx_k_137, sizeof(__pyx_k_137), 0, 0, 1, 0},
   {&__pyx_kp_s_138, __pyx_k_138, sizeof(__pyx_k_138), 0, 0, 1, 0},
   {&__pyx_kp_s_139, __pyx_k_139, sizeof(__pyx_k_139), 0, 0, 1, 0},
   {&__pyx_kp_s_14, __pyx_k_14, sizeof(__pyx_k_14), 0, 0, 1, 0},
-  {&__pyx_kp_s_141, __pyx_k_141, sizeof(__pyx_k_141), 0, 0, 1, 0},
-  {&__pyx_kp_s_145, __pyx_k_145, sizeof(__pyx_k_145), 0, 0, 1, 0},
-  {&__pyx_n_s_151, __pyx_k_151, sizeof(__pyx_k_151), 0, 0, 1, 1},
-  {&__pyx_kp_s_154, __pyx_k_154, sizeof(__pyx_k_154), 0, 0, 1, 0},
+  {&__pyx_kp_s_140, __pyx_k_140, sizeof(__pyx_k_140), 0, 0, 1, 0},
+  {&__pyx_kp_s_142, __pyx_k_142, sizeof(__pyx_k_142), 0, 0, 1, 0},
+  {&__pyx_kp_s_146, __pyx_k_146, sizeof(__pyx_k_146), 0, 0, 1, 0},
+  {&__pyx_n_s_152, __pyx_k_152, sizeof(__pyx_k_152), 0, 0, 1, 1},
+  {&__pyx_kp_s_155, __pyx_k_155, sizeof(__pyx_k_155), 0, 0, 1, 0},
   {&__pyx_kp_s_157, __pyx_k_157, sizeof(__pyx_k_157), 0, 0, 1, 0},
-  {&__pyx_kp_s_158, __pyx_k_158, sizeof(__pyx_k_158), 0, 0, 1, 0},
-  {&__pyx_kp_s_162, __pyx_k_162, sizeof(__pyx_k_162), 0, 0, 1, 0},
+  {&__pyx_kp_s_160, __pyx_k_160, sizeof(__pyx_k_160), 0, 0, 1, 0},
+  {&__pyx_kp_s_164, __pyx_k_164, sizeof(__pyx_k_164), 0, 0, 1, 0},
   {&__pyx_kp_s_18, __pyx_k_18, sizeof(__pyx_k_18), 0, 0, 1, 0},
   {&__pyx_kp_s_2, __pyx_k_2, sizeof(__pyx_k_2), 0, 0, 1, 0},
   {&__pyx_kp_s_21, __pyx_k_21, sizeof(__pyx_k_21), 0, 0, 1, 0},
@@ -79383,6 +79350,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
   {&__pyx_n_s__min_bound, __pyx_k__min_bound, sizeof(__pyx_k__min_bound), 0, 0, 1, 1},
   {&__pyx_n_s__min_dist, __pyx_k__min_dist, sizeof(__pyx_k__min_dist), 0, 0, 1, 1},
   {&__pyx_n_s__min_gap_size, __pyx_k__min_gap_size, sizeof(__pyx_k__min_gap_size), 0, 0, 1, 1},
+  {&__pyx_n_s__monitor_cpu, __pyx_k__monitor_cpu, sizeof(__pyx_k__monitor_cpu), 0, 0, 1, 1},
   {&__pyx_n_s__name, __pyx_k__name, sizeof(__pyx_k__name), 0, 0, 1, 1},
   {&__pyx_n_s__namedtuple, __pyx_k__namedtuple, sizeof(__pyx_k__namedtuple), 0, 0, 1, 1},
   {&__pyx_n_s__new_e_i, __pyx_k__new_e_i, sizeof(__pyx_k__new_e_i), 0, 0, 1, 1},
@@ -79492,8 +79460,8 @@ static int __Pyx_InitCachedBuiltins(void) {
   __pyx_builtin_zip = __Pyx_GetName(__pyx_b, __pyx_n_s__zip); if (!__pyx_builtin_zip) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 363; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_builtin_StopIteration = __Pyx_GetName(__pyx_b, __pyx_n_s__StopIteration); if (!__pyx_builtin_StopIteration) {__pyx_filename = __pyx_f[6]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_builtin_cmp = __Pyx_GetName(__pyx_b, __pyx_n_s__cmp); if (!__pyx_builtin_cmp) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 173; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __pyx_builtin_sorted = __Pyx_GetName(__pyx_b, __pyx_n_s__sorted); if (!__pyx_builtin_sorted) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 970; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
-  __pyx_builtin_max = __Pyx_GetName(__pyx_b, __pyx_n_s__max); if (!__pyx_builtin_max) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1143; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_builtin_sorted = __Pyx_GetName(__pyx_b, __pyx_n_s__sorted); if (!__pyx_builtin_sorted) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 971; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_builtin_max = __Pyx_GetName(__pyx_b, __pyx_n_s__max); if (!__pyx_builtin_max) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1148; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   return 0;
   __pyx_L1_error:;
   return -1;
@@ -79503,7 +79471,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_RefNannyDeclarations
   __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":20
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":20
  *         self.word2id = {"END_OF_FILE":0, "END_OF_LINE":1}
  *         self.id2word = ["END_OF_FILE", "END_OF_LINE"]
  *         self.data = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -79520,7 +79488,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_1000);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_10));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":21
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":21
  *         self.id2word = ["END_OF_FILE", "END_OF_LINE"]
  *         self.data = IntList(1000,1000)
  *         self.sent_id = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -79537,7 +79505,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_1000);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_11));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":22
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":22
  *         self.data = IntList(1000,1000)
  *         self.sent_id = IntList(1000,1000)
  *         self.sent_index = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -79554,7 +79522,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_1000);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_12));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":66
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":66
  *                     f.write("%s " % self.get_word(w_id))
  *                 if w_id == 1:
  *                     f.write("\n")             # <<<<<<<<<<<<<<
@@ -79568,7 +79536,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_15));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":61
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":61
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  *     def write_text(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -79588,7 +79556,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_16));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":69
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":69
  * 
  *     def read_text(self, char* filename):
  *         with gzip_or_text(filename) as fp:             # <<<<<<<<<<<<<<
@@ -79608,7 +79576,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_17));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":74
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":74
  *     def read_bitext(self, char* filename, int side):
  *         with gzip_or_text(filename) as fp:
  *             data = (line.split(' ||| ')[side] for line in fp)             # <<<<<<<<<<<<<<
@@ -79622,7 +79590,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_18));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_19));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":73
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":73
  * 
  *     def read_bitext(self, char* filename, int side):
  *         with gzip_or_text(filename) as fp:             # <<<<<<<<<<<<<<
@@ -79642,7 +79610,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_20));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":144
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":144
  *         for i in self.data:
  *             f.write("%d " %i)
  *         f.write("\n")             # <<<<<<<<<<<<<<
@@ -79656,7 +79624,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_22));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":147
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":147
  *         for i in self.sent_index:
  *             f.write("%d " %i)
  *         f.write("\n")             # <<<<<<<<<<<<<<
@@ -79670,7 +79638,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_23));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":150
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":150
  *         for i in self.sent_id:
  *             f.write("%d " %i)
  *         f.write("\n")             # <<<<<<<<<<<<<<
@@ -79684,7 +79652,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_24));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":153
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":153
  *         for word in self.id2word:
  *             f.write("%s %d " % (word, self.word2id[word]))
  *         f.write("\n")             # <<<<<<<<<<<<<<
@@ -79698,7 +79666,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_26));
 
-  /* "/home/m/workspace/cdec/python/src/sa/data_array.pxi":156
+  /* "/home/paulb/workspace/cdec/python/src/sa/data_array.pxi":156
  * 
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -79717,7 +79685,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_28));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":46
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":46
  * 
  *     def __cinit__(self, from_binary=None, from_text=None):
  *         self.links = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -79734,7 +79702,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_1000);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_29));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":47
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":47
  *     def __cinit__(self, from_binary=None, from_text=None):
  *         self.links = IntList(1000,1000)
  *         self.sent_index = IntList(1000,1000)             # <<<<<<<<<<<<<<
@@ -79751,7 +79719,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_1000);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_30));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":59
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":59
  *                 pairs = line.split()
  *                 for pair in pairs:
  *                     (i, j) = map(int, pair.split('-'))             # <<<<<<<<<<<<<<
@@ -79765,7 +79733,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_31));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_32));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":54
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":54
  * 
  *     def read_text(self, char* filename):
  *         with gzip_or_text(filename) as f:             # <<<<<<<<<<<<<<
@@ -79785,7 +79753,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_33));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":75
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":75
  *             for i, link in enumerate(self.links):
  *                 while i >= self.sent_index[sent_num]:
  *                     f.write("\n")             # <<<<<<<<<<<<<<
@@ -79799,7 +79767,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_34));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":78
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":78
  *                     sent_num = sent_num + 1
  *                 f.write("%d-%d " % self.unlink(link))
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -79813,7 +79781,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_36));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":71
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":71
  * 
  *     def write_text(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -79833,7 +79801,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_37));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":92
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":92
  *             for link in self.links:
  *                 f.write("%d " % link)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -79847,7 +79815,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_38));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":95
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":95
  *             for i in self.sent_index:
  *                 f.write("%d " % i)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -79861,7 +79829,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_39));
 
-  /* "/home/m/workspace/cdec/python/src/sa/alignment.pxi":88
+  /* "/home/paulb/workspace/cdec/python/src/sa/alignment.pxi":88
  * 
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -79881,7 +79849,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_40));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":297
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":297
  * 
  *             # Re-read file, placing words into buckets
  *             f.seek(0)             # <<<<<<<<<<<<<<
@@ -79895,7 +79863,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_0);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_43));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":273
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":273
  * 
  *         fcount = IntList()
  *         with gzip_or_text(filename) as f:             # <<<<<<<<<<<<<<
@@ -79915,7 +79883,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_44));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":339
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":339
  * 
  *         if i > j:
  *             raise Exception("Sort error in CLex")             # <<<<<<<<<<<<<<
@@ -79929,7 +79897,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_46));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_47));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":362
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":362
  *             for i in self.f_index:
  *                 f.write("%d " % i)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -79943,7 +79911,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_49));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":365
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":365
  *             for i, s1, s2 in zip(self.e_index, self.col1, self.col2):
  *                 f.write("%d %f %f " % (i, s1, s2))
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -79957,7 +79925,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_51));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":368
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":368
  *             for i, w in enumerate(self.id2fword):
  *                 f.write("%d %s " % (i, w))
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -79971,7 +79939,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_53));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":371
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":371
  *             for i, w in enumerate(self.id2eword):
  *                 f.write("%d %s " % (i, w))
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -79985,7 +79953,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_54));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":359
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":359
  * 
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -80005,7 +79973,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_55));
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":404
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":404
  *         cdef i, N, e_id, f_id
  * 
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -80025,7 +79993,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_57));
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":13
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":13
  *         cdef IntList rank
  * 
  *         logger.info("Constructing LCP array")             # <<<<<<<<<<<<<<
@@ -80039,7 +80007,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_60));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_61));
 
-  /* "/home/m/workspace/cdec/python/src/sa/lcp.pxi":34
+  /* "/home/paulb/workspace/cdec/python/src/sa/lcp.pxi":34
  *             if h > 0:
  *                 h = h-1
  *         logger.info("LCP array completed")             # <<<<<<<<<<<<<<
@@ -80053,7 +80021,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_62));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_63));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":297
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":297
  *         pattern_rank = {}
  * 
  *         logger.info("Precomputing frequent intersections")             # <<<<<<<<<<<<<<
@@ -80067,7 +80035,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_72));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_73));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":314
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":314
  *         queue = IntList(increment=1000)
  * 
  *         logger.info("    Computing inverted indexes...")             # <<<<<<<<<<<<<<
@@ -80081,7 +80049,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_74));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_75));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":329
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":329
  *                     trie_node_data_append(node, i)
  * 
  *         logger.info("    Computing collocations...")             # <<<<<<<<<<<<<<
@@ -80095,7 +80063,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_76));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_77));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":393
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":393
  *             for pattern2 in J_set:
  *                 if len(pattern1) + len(pattern2) + 1 < self.max_length:
  *                     combined_pattern = pattern1 + (-1,) + pattern2             # <<<<<<<<<<<<<<
@@ -80109,7 +80077,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_neg_1);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_79));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":400
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":400
  *                 x = x+1
  *                 if len(pattern1) + len(pattern2) + 1 <= self.max_length:
  *                     combined_pattern = pattern1 + (-1,) + pattern2             # <<<<<<<<<<<<<<
@@ -80123,7 +80091,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_neg_1);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_80));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":407
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":407
  *                 x = x+2
  *                 if len(pattern1) + len(pattern2) + 1<= self.max_length:
  *                     combined_pattern = pattern1 + (-1,) + pattern2             # <<<<<<<<<<<<<<
@@ -80137,7 +80105,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_neg_1);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_81));
 
-  /* "/home/m/workspace/cdec/python/src/sa/precomputation.pxi":409
+  /* "/home/paulb/workspace/cdec/python/src/sa/precomputation.pxi":409
  *                     combined_pattern = pattern1 + (-1,) + pattern2
  *                     IJ_set.add(combined_pattern)
  *                     combined_pattern = pattern2 + (-1,) + pattern1             # <<<<<<<<<<<<<<
@@ -80151,7 +80119,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(__pyx_int_neg_1);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_82));
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":94
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":94
  * 
  *         '''Step 3: read off suffix array from inverse suffix array'''
  *         logger.info("    Finalizing sort...")             # <<<<<<<<<<<<<<
@@ -80165,7 +80133,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_92));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_93));
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":193
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":193
  *             for a_i in self.sa:
  *                 f.write("%d " % a_i)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -80179,7 +80147,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_96));
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":196
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":196
  *             for w_i in self.ha:
  *                 f.write("%d " % w_i)
  *             f.write("\n")             # <<<<<<<<<<<<<<
@@ -80193,7 +80161,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_97));
 
-  /* "/home/m/workspace/cdec/python/src/sa/suffix_array.pxi":189
+  /* "/home/paulb/workspace/cdec/python/src/sa/suffix_array.pxi":189
  * 
  *     def write_enhanced(self, char* filename):
  *         with open(filename, "w") as f:             # <<<<<<<<<<<<<<
@@ -80213,7 +80181,7 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(Py_None);
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_98));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":119
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":119
  *             logger.info("Sampling strategy: uniform, max sample size = %d", sample_size)
  *         else:
  *             logger.info("Sampling strategy: no sampling")             # <<<<<<<<<<<<<<
@@ -80227,270 +80195,279 @@ static int __Pyx_InitCachedConstants(void) {
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_101));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_102));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":338
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":339
  *         self.rules.root = ExtendedTrieNode(phrase_location=PhraseLocation())
  *         if alignment is None:
  *             raise Exception("Must specify an alignment object")             # <<<<<<<<<<<<<<
  *         self.alignment = alignment
  * 
  */
-  __pyx_k_tuple_107 = PyTuple_New(1); if (unlikely(!__pyx_k_tuple_107)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 338; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_k_tuple_107 = PyTuple_New(1); if (unlikely(!__pyx_k_tuple_107)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 339; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_k_tuple_107);
   __Pyx_INCREF(((PyObject *)__pyx_kp_s_106));
   PyTuple_SET_ITEM(__pyx_k_tuple_107, 0, ((PyObject *)__pyx_kp_s_106));
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_106));
   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_107));
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":1062
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":1064
  *                         else:
  *                             #ERROR: We never get here
  *                             raise Exception("Keyword trie error")             # <<<<<<<<<<<<<<
  *                 # checking whether lookup_required
  *                 if lookup_required:
  */
-  __pyx_k_tuple_122 = PyTuple_New(1); if (unlikely(!__pyx_k_tuple_122)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1062; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_k_tuple_122 = PyTuple_New(1); if (unlikely(!__pyx_k_tuple_122)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1064; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_k_tuple_122);
   __Pyx_INCREF(((PyObject *)__pyx_kp_s_121));
   PyTuple_SET_ITEM(__pyx_k_tuple_122, 0, ((PyObject *)__pyx_kp_s_121));
   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_121));
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2120
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2125
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2121
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2126
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2133
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-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2166
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2171
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+
+  /* "_sa.pyx":5
+ * import gzip
+ * 
+ * def monitor_cpu():             # <<<<<<<<<<<<<<
+ *     return (resource.getrusage(resource.RUSAGE_SELF).ru_utime+
+ *             resource.getrusage(resource.RUSAGE_SELF).ru_stime)
+ */
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   /* "_sa.pyx":9
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+  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_158));
+  __pyx_k_codeobj_159 = (PyObject*)__Pyx_PyCode_New(1, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_158, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_157, __pyx_n_s__gzip_or_text, 9, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_159)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
   /* "_sa.pyx":15
  *         return open(filename)
@@ -80517,209 +80494,209 @@ static int __Pyx_InitCachedConstants(void) {
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  * include "float_list.pxi"
  */
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_158));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_159));
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+  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_160));
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":107
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":107
  *     return ALPHABET.fromstring(string, terminal)
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":110
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":110
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-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":114
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":114
  *     return tuple(((word, None, 1), ) for word in word_ids)
  * 
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+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":118
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-  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_22_form_rule) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2049; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_22_form_rule) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2054; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_23_genexpr) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2110; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_23_genexpr) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2115; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_24_fmt_rule) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2114; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_24_fmt_rule) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2119; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_ptype_3_sa___pyx_scope_struct_24_fmt_rule = &__pyx_type_3_sa___pyx_scope_struct_24_fmt_rule;
-  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_25_genexpr) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2115; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_25_genexpr) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2120; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_ptype_3_sa___pyx_scope_struct_25_genexpr = &__pyx_type_3_sa___pyx_scope_struct_25_genexpr;
-  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_26_get_f_phrases) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2161; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_26_get_f_phrases) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2166; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_ptype_3_sa___pyx_scope_struct_26_get_f_phrases = &__pyx_type_3_sa___pyx_scope_struct_26_get_f_phrases;
   if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_27___iter__) < 0) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __pyx_ptype_3_sa___pyx_scope_struct_27___iter__ = &__pyx_type_3_sa___pyx_scope_struct_27___iter__;
@@ -81076,13 +81054,25 @@ PyMODINIT_FUNC PyInit__sa(void)
  * import resource
  * import gzip             # <<<<<<<<<<<<<<
  * 
- * cdef float monitor_cpu():
+ * def monitor_cpu():
  */
   __pyx_t_1 = __Pyx_Import(((PyObject *)__pyx_n_s__gzip), 0, -1); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 3; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__gzip, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 3; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
+  /* "_sa.pyx":5
+ * import gzip
+ * 
+ * def monitor_cpu():             # <<<<<<<<<<<<<<
+ *     return (resource.getrusage(resource.RUSAGE_SELF).ru_utime+
+ *             resource.getrusage(resource.RUSAGE_SELF).ru_stime)
+ */
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_1monitor_cpu, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 5; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_GOTREF(__pyx_t_1);
+  if (PyObject_SetAttr(__pyx_m, __pyx_n_s__monitor_cpu, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 5; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
+
   /* "_sa.pyx":9
  *             resource.getrusage(resource.RUSAGE_SELF).ru_stime)
  * 
@@ -81090,7 +81080,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  *     if filename.endswith('.gz'):
  *         return gzip.GzipFile(filename)
  */
-  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_1gzip_or_text, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_3gzip_or_text, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__gzip_or_text, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 9; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
@@ -81107,13 +81097,13 @@ PyMODINIT_FUNC PyInit__sa(void)
   __pyx_t_2 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__getLogger); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
-  __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_159), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_161), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__logger, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/bilex.pxi":54
+  /* "/home/paulb/workspace/cdec/python/src/sa/bilex.pxi":54
  *     cdef id2eword, id2fword, eword2id, fword2id
  * 
  *     def __cinit__(self, from_text=None, from_data=False, from_binary=None,             # <<<<<<<<<<<<<<
@@ -81126,7 +81116,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   __Pyx_GIVEREF(__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":17
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":17
  * from libc.string cimport memset
  * 
  * cdef int MIN_BOTTOM_SIZE = 32             # <<<<<<<<<<<<<<
@@ -81135,7 +81125,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_v_3_sa_MIN_BOTTOM_SIZE = 32;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":18
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":18
  * 
  * cdef int MIN_BOTTOM_SIZE = 32
  * cdef int MIN_BOTTOM_BITS = 5             # <<<<<<<<<<<<<<
@@ -81144,7 +81134,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_v_3_sa_MIN_BOTTOM_BITS = 5;
 
-  /* "/home/m/workspace/cdec/python/src/sa/veb.pxi":28
+  /* "/home/paulb/workspace/cdec/python/src/sa/veb.pxi":28
  *         LOWER_MASK[i] = mask
  * 
  * _init_lower_mask()             # <<<<<<<<<<<<<<
@@ -81153,7 +81143,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_f_3_sa__init_lower_mask();
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":4
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":4
  * from libc.stdlib cimport malloc, realloc, strtol
  * 
  * cdef int INDEX_SHIFT = 3             # <<<<<<<<<<<<<<
@@ -81162,7 +81152,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_v_3_sa_INDEX_SHIFT = 3;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":5
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":5
  * 
  * cdef int INDEX_SHIFT = 3
  * cdef int INDEX_MASK = (1<<INDEX_SHIFT)-1             # <<<<<<<<<<<<<<
@@ -81171,7 +81161,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_v_3_sa_INDEX_MASK = ((1 << __pyx_v_3_sa_INDEX_SHIFT) - 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":87
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":87
  *             return self.terminals.index(s)
  * 
  * cdef Alphabet ALPHABET = Alphabet()             # <<<<<<<<<<<<<<
@@ -81186,78 +81176,78 @@ PyMODINIT_FUNC PyInit__sa(void)
   __pyx_v_3_sa_ALPHABET = ((struct __pyx_obj_3_sa_Alphabet *)__pyx_t_1);
   __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":107
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":107
  *     return ALPHABET.fromstring(string, terminal)
  * 
  * def isvar(sym):             # <<<<<<<<<<<<<<
  *     return sym_isvar(sym)
  * 
  */
-  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_3isvar, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 107; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_5isvar, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 107; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__isvar, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 107; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":110
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":110
  *     return sym_isvar(sym)
  * 
  * def make_lattice(words):             # <<<<<<<<<<<<<<
  *     word_ids = (sym_fromstring(word, True) for word in words)
  *     return tuple(((word, None, 1), ) for word in word_ids)
  */
-  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_5make_lattice, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 110; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_7make_lattice, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 110; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__make_lattice, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 110; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":114
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":114
  *     return tuple(((word, None, 1), ) for word in word_ids)
  * 
  * def decode_lattice(lattice):             # <<<<<<<<<<<<<<
  *     return tuple((sym_tostring(sym), weight, dist) for (sym, weight, dist) in arc
  *             for arc in node for node in lattice)
  */
-  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_7decode_lattice, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 114; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_9decode_lattice, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 114; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__decode_lattice, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 114; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":118
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":118
  *             for arc in node for node in lattice)
  * 
  * def decode_sentence(lattice):             # <<<<<<<<<<<<<<
  *     return tuple(sym_tostring(sym) for ((sym, _, _),) in lattice)
  * 
  */
-  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_9decode_sentence, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_11decode_sentence, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__decode_sentence, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 118; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":121
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":121
  *     return tuple(sym_tostring(sym) for ((sym, _, _),) in lattice)
  * 
  * def encode_words(words):             # <<<<<<<<<<<<<<
  *     return tuple(sym_fromstring(word, True) for word in words)
  * 
  */
-  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_11encode_words, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 121; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_13encode_words, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 121; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__encode_words, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 121; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/sym.pxi":124
+  /* "/home/paulb/workspace/cdec/python/src/sa/sym.pxi":124
  *     return tuple(sym_fromstring(word, True) for word in words)
  * 
  * def decode_words(syms):             # <<<<<<<<<<<<<<
  *     return tuple(sym_tostring(sym) for sym in syms)
  */
-  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_13decode_words, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3_sa_15decode_words, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__decode_words, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":5
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":5
  * # Much faster than the Python numbers reported there.
  * # Note to reader: this code is closer to C than Python
  * import gc             # <<<<<<<<<<<<<<
@@ -81269,7 +81259,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__gc, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 5; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":6
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":6
  * # Note to reader: this code is closer to C than Python
  * import gc
  * import itertools             # <<<<<<<<<<<<<<
@@ -81281,7 +81271,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__itertools, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 6; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":12
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":12
  * from libc.math cimport fmod, ceil, floor, log
  * 
  * from collections import defaultdict, Counter, namedtuple             # <<<<<<<<<<<<<<
@@ -81328,7 +81318,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":14
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":14
  * from collections import defaultdict, Counter, namedtuple
  * 
  * FeatureContext = namedtuple('FeatureContext',             # <<<<<<<<<<<<<<
@@ -81338,7 +81328,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   __pyx_t_2 = __Pyx_GetName(__pyx_m, __pyx_n_s__namedtuple); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 14; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":15
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":15
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  *     ['fphrase',             # <<<<<<<<<<<<<<
@@ -81401,7 +81391,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__FeatureContext, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 14; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":30
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":30
  *     ])
  * 
  * OnlineFeatureContext = namedtuple('OnlineFeatureContext',             # <<<<<<<<<<<<<<
@@ -81411,7 +81401,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   __pyx_t_1 = __Pyx_GetName(__pyx_m, __pyx_n_s__namedtuple); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":31
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":31
  * 
  * OnlineFeatureContext = namedtuple('OnlineFeatureContext',
  *     ['fcount',             # <<<<<<<<<<<<<<
@@ -81440,9 +81430,9 @@ PyMODINIT_FUNC PyInit__sa(void)
   __Pyx_GIVEREF(((PyObject *)__pyx_n_s__bilex_fe));
   __pyx_t_2 = PyTuple_New(2); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
-  __Pyx_INCREF(((PyObject *)__pyx_n_s_151));
-  PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_n_s_151));
-  __Pyx_GIVEREF(((PyObject *)__pyx_n_s_151));
+  __Pyx_INCREF(((PyObject *)__pyx_n_s_152));
+  PyTuple_SET_ITEM(__pyx_t_2, 0, ((PyObject *)__pyx_n_s_152));
+  __Pyx_GIVEREF(((PyObject *)__pyx_n_s_152));
   PyTuple_SET_ITEM(__pyx_t_2, 1, ((PyObject *)__pyx_t_3));
   __Pyx_GIVEREF(((PyObject *)__pyx_t_3));
   __pyx_t_3 = 0;
@@ -81450,10 +81440,10 @@ PyMODINIT_FUNC PyInit__sa(void)
   __Pyx_GOTREF(__pyx_t_3);
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
   __Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
-  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_151, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyObject_SetAttr(__pyx_m, __pyx_n_s_152, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 30; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":39
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":39
  *     ])
  * 
  * cdef int PRECOMPUTE = 0             # <<<<<<<<<<<<<<
@@ -81462,7 +81452,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_v_3_sa_PRECOMPUTE = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":40
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":40
  * 
  * cdef int PRECOMPUTE = 0
  * cdef int MERGE = 1             # <<<<<<<<<<<<<<
@@ -81471,7 +81461,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_v_3_sa_MERGE = 1;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":41
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":41
  * cdef int PRECOMPUTE = 0
  * cdef int MERGE = 1
  * cdef int BAEZA_YATES = 2             # <<<<<<<<<<<<<<
@@ -81480,16 +81470,16 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_v_3_sa_BAEZA_YATES = 2;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":44
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":44
  * 
  * # NOTE: was encoded as a non-terminal in the previous version
  * cdef int EPSILON = sym_fromstring('*EPS*', True)             # <<<<<<<<<<<<<<
  * 
  * cdef class TrieNode:
  */
-  __pyx_v_3_sa_EPSILON = __pyx_f_3_sa_sym_fromstring(__pyx_k_173, 1);
+  __pyx_v_3_sa_EPSILON = __pyx_f_3_sa_sym_fromstring(__pyx_k_175, 1);
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":67
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":67
  *     cdef public int count
  *     cdef public root
  *     def __cinit__(self, extended=False):             # <<<<<<<<<<<<<<
@@ -81502,43 +81492,43 @@ PyMODINIT_FUNC PyInit__sa(void)
   __Pyx_GIVEREF(__pyx_t_3);
   __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2200
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2205
  * 
  * # Spans are _inclusive_ on both ends [i, j]
  * def span_check(vec, i, j):             # <<<<<<<<<<<<<<
  *     k = i
  *     while k <= j:
  */
-  __pyx_t_3 = PyCFunction_NewEx(&__pyx_mdef_3_sa_15span_check, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_3 = PyCFunction_NewEx(&__pyx_mdef_3_sa_17span_check, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2205; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_3);
-  if (PyObject_SetAttr(__pyx_m, __pyx_n_s__span_check, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2200; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyObject_SetAttr(__pyx_m, __pyx_n_s__span_check, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2205; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2208
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2213
  *     return True
  * 
  * def span_inc(vec, i, j):             # <<<<<<<<<<<<<<
  *     k = i
  *     while k <= j:
  */
-  __pyx_t_3 = PyCFunction_NewEx(&__pyx_mdef_3_sa_17span_inc, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2208; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_3 = PyCFunction_NewEx(&__pyx_mdef_3_sa_19span_inc, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2213; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_3);
-  if (PyObject_SetAttr(__pyx_m, __pyx_n_s__span_inc, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2208; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyObject_SetAttr(__pyx_m, __pyx_n_s__span_inc, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2213; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/rulefactory.pxi":2214
+  /* "/home/paulb/workspace/cdec/python/src/sa/rulefactory.pxi":2219
  *         k += 1
  * 
  * def span_dec(vec, i, j):             # <<<<<<<<<<<<<<
  *     k = i
  *     while k <= j:
  */
-  __pyx_t_3 = PyCFunction_NewEx(&__pyx_mdef_3_sa_19span_dec, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2214; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_3 = PyCFunction_NewEx(&__pyx_mdef_3_sa_21span_dec, NULL, __pyx_n_s___sa); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2219; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_3);
-  if (PyObject_SetAttr(__pyx_m, __pyx_n_s__span_dec, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2214; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  if (PyObject_SetAttr(__pyx_m, __pyx_n_s__span_dec, __pyx_t_3) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 2219; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/features.pxi":1
+  /* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":1
  * cdef StringMap FD = StringMap() # Feature name dictionary             # <<<<<<<<<<<<<<
  * 
  * INITIAL_CAPACITY = 7 # default number of features
@@ -81551,7 +81541,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   __pyx_v_3_sa_FD = ((struct __pyx_obj_3_sa_StringMap *)__pyx_t_3);
   __pyx_t_3 = 0;
 
-  /* "/home/m/workspace/cdec/python/src/sa/features.pxi":3
+  /* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":3
  * cdef StringMap FD = StringMap() # Feature name dictionary
  * 
  * INITIAL_CAPACITY = 7 # default number of features             # <<<<<<<<<<<<<<
@@ -81560,7 +81550,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__INITIAL_CAPACITY, __pyx_int_7) < 0) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 3; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
 
-  /* "/home/m/workspace/cdec/python/src/sa/features.pxi":4
+  /* "/home/paulb/workspace/cdec/python/src/sa/features.pxi":4
  * 
  * INITIAL_CAPACITY = 7 # default number of features
  * INCREMENT = INITIAL_CAPACITY # double size             # <<<<<<<<<<<<<<
@@ -81642,7 +81632,7 @@ static void __Pyx_RaiseDoubleKeywordsError(
         "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
         #else
         "%s() got multiple values for keyword argument '%s'", func_name,
-        PyString_AsString(kw_name));
+        PyString_AS_STRING(kw_name));
         #endif
 }
 
@@ -81663,72 +81653,48 @@ static int __Pyx_ParseOptionalKeywords(
         while (*name && (**name != key)) name++;
         if (*name) {
             values[name-argnames] = value;
-            continue;
-        }
-        name = first_kw_arg;
-        #if PY_MAJOR_VERSION < 3
-        if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) {
-            while (*name) {
-                if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
-                        && _PyString_Eq(**name, key)) {
-                    values[name-argnames] = value;
-                    break;
-                }
-                name++;
-            }
-            if (*name) continue;
-            else {
-                PyObject*** argname = argnames;
-                while (argname != first_kw_arg) {
-                    if ((**argname == key) || (
-                            (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
-                             && _PyString_Eq(**argname, key))) {
-                        goto arg_passed_twice;
-                    }
-                    argname++;
+        } else {
+            #if PY_MAJOR_VERSION < 3
+            if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key))) {
+            #else
+            if (unlikely(!PyUnicode_Check(key))) {
+            #endif
+                goto invalid_keyword_type;
+            } else {
+                for (name = first_kw_arg; *name; name++) {
+                    #if PY_MAJOR_VERSION >= 3
+                    if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) &&
+                        PyUnicode_Compare(**name, key) == 0) break;
+                    #else
+                    if (PyString_GET_SIZE(**name) == PyString_GET_SIZE(key) &&
+                        _PyString_Eq(**name, key)) break;
+                    #endif
                 }
-            }
-        } else
-        #endif
-        if (likely(PyUnicode_Check(key))) {
-            while (*name) {
-                int cmp = (**name == key) ? 0 :
-                #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
-                    (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
-                #endif
-                    PyUnicode_Compare(**name, key);
-                if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
-                if (cmp == 0) {
+                if (*name) {
                     values[name-argnames] = value;
-                    break;
-                }
-                name++;
-            }
-            if (*name) continue;
-            else {
-                PyObject*** argname = argnames;
-                while (argname != first_kw_arg) {
-                    int cmp = (**argname == key) ? 0 :
-                    #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
-                        (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
-                    #endif
-                        PyUnicode_Compare(**argname, key);
-                    if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
-                    if (cmp == 0) goto arg_passed_twice;
-                    argname++;
+                } else {
+                    for (name=argnames; name != first_kw_arg; name++) {
+                        if (**name == key) goto arg_passed_twice;
+                        #if PY_MAJOR_VERSION >= 3
+                        if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) &&
+                            PyUnicode_Compare(**name, key) == 0) goto arg_passed_twice;
+                        #else
+                        if (PyString_GET_SIZE(**name) == PyString_GET_SIZE(key) &&
+                            _PyString_Eq(**name, key)) goto arg_passed_twice;
+                        #endif
+                    }
+                    if (kwds2) {
+                        if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
+                    } else {
+                        goto invalid_keyword;
+                    }
                 }
             }
-        } else
-            goto invalid_keyword_type;
-        if (kwds2) {
-            if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
-        } else {
-            goto invalid_keyword;
         }
     }
     return 0;
 arg_passed_twice:
-    __Pyx_RaiseDoubleKeywordsError(function_name, key);
+    __Pyx_RaiseDoubleKeywordsError(function_name, **name);
     goto bad;
 invalid_keyword_type:
     PyErr_Format(PyExc_TypeError,
@@ -81767,7 +81733,7 @@ static void __Pyx_RaiseArgtupleInvalid(
         more_or_less = "exactly";
     }
     PyErr_Format(PyExc_TypeError,
-                 "%s() takes %s %" CYTHON_FORMAT_SSIZE_T "d positional argument%s (%" CYTHON_FORMAT_SSIZE_T "d given)",
+                 "%s() takes %s %"PY_FORMAT_SIZE_T"d positional argument%s (%"PY_FORMAT_SIZE_T"d given)",
                  func_name, more_or_less, num_expected,
                  (num_expected == 1) ? "" : "s", num_found);
 }
@@ -81807,38 +81773,33 @@ static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyOb
 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
                         CYTHON_UNUSED PyObject *cause) {
     Py_XINCREF(type);
-    if (!value || value == Py_None)
-        value = NULL;
-    else
+    Py_XINCREF(value);
+    Py_XINCREF(tb);
+    if (tb == Py_None) {
+        Py_DECREF(tb);
+        tb = 0;
+    }
+    else if (tb != NULL && !PyTraceBack_Check(tb)) {
+        PyErr_SetString(PyExc_TypeError,
+            "raise: arg 3 must be a traceback or None");
+        goto raise_error;
+    }
+    if (value == NULL) {
+        value = Py_None;
         Py_INCREF(value);
-    if (!tb || tb == Py_None)
-        tb = NULL;
-    else {
-        Py_INCREF(tb);
-        if (!PyTraceBack_Check(tb)) {
-            PyErr_SetString(PyExc_TypeError,
-                "raise: arg 3 must be a traceback or None");
-            goto raise_error;
-        }
     }
     #if PY_VERSION_HEX < 0x02050000
-    if (PyClass_Check(type)) {
+    if (!PyClass_Check(type))
     #else
-    if (PyType_Check(type)) {
+    if (!PyType_Check(type))
     #endif
-#if CYTHON_COMPILING_IN_PYPY
-        if (!value) {
-            Py_INCREF(Py_None);
-            value = Py_None;
-        }
-#endif
-        PyErr_NormalizeException(&type, &value, &tb);
-    } else {
-        if (value) {
+    {
+        if (value != Py_None) {
             PyErr_SetString(PyExc_TypeError,
                 "instance exception may not have a separate value");
             goto raise_error;
         }
+        Py_DECREF(value);
         value = type;
         #if PY_VERSION_HEX < 0x02050000
             if (PyInstance_Check(type)) {
@@ -81871,7 +81832,6 @@ raise_error:
 }
 #else /* Python 3+ */
 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
-    PyObject* owned_instance = NULL;
     if (tb == Py_None) {
         tb = 0;
     } else if (tb && !PyTraceBack_Check(tb)) {
@@ -81889,36 +81849,12 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject
         }
         value = type;
         type = (PyObject*) Py_TYPE(value);
-    } else if (PyExceptionClass_Check(type)) {
-        PyObject *args;
-        if (!value)
-            args = PyTuple_New(0);
-        else if (PyTuple_Check(value)) {
-            Py_INCREF(value);
-            args = value;
-        }
-        else
-            args = PyTuple_Pack(1, value);
-        if (!args)
-            goto bad;
-        owned_instance = PyEval_CallObject(type, args);
-        Py_DECREF(args);
-        if (!owned_instance)
-            goto bad;
-        value = owned_instance;
-        if (!PyExceptionInstance_Check(value)) {
-            PyErr_Format(PyExc_TypeError,
-                         "calling %R should have returned an instance of "
-                         "BaseException, not %R",
-                         type, Py_TYPE(value));
-            goto bad;
-        }
-    } else {
+    } else if (!PyExceptionClass_Check(type)) {
         PyErr_SetString(PyExc_TypeError,
             "raise: exception class must be a subclass of BaseException");
         goto bad;
     }
-    if (cause && cause != Py_None) {
+    if (cause) {
         PyObject *fixed_cause;
         if (PyExceptionClass_Check(cause)) {
             fixed_cause = PyObject_CallObject(cause, NULL);
@@ -81935,6 +81871,9 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject
                             "BaseException");
             goto bad;
         }
+        if (!value) {
+            value = PyObject_CallObject(type, NULL);
+        }
         PyException_SetCause(value, fixed_cause);
     }
     PyErr_SetObject(type, value);
@@ -81948,7 +81887,6 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject
         }
     }
 bad:
-    Py_XDECREF(owned_instance);
     return;
 }
 #endif
@@ -81972,17 +81910,13 @@ static CYTHON_INLINE int __Pyx_CheckKeywordStrings(
 {
     PyObject* key = 0;
     Py_ssize_t pos = 0;
-#if CPYTHON_COMPILING_IN_PYPY
-    if (!kw_allowed && PyDict_Next(kwdict, &pos, &key, 0))
-        goto invalid_keyword;
-    return 1;
-#else
     while (PyDict_Next(kwdict, &pos, &key, 0)) {
         #if PY_MAJOR_VERSION < 3
         if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key)))
+        #else
+        if (unlikely(!PyUnicode_Check(key)))
         #endif
-            if (unlikely(!PyUnicode_Check(key)))
-                goto invalid_keyword_type;
+            goto invalid_keyword_type;
     }
     if ((!kw_allowed) && unlikely(key))
         goto invalid_keyword;
@@ -81991,7 +81925,6 @@ invalid_keyword_type:
     PyErr_Format(PyExc_TypeError,
         "%s() keywords must be strings", function_name);
     return 0;
-#endif
 invalid_keyword:
     PyErr_Format(PyExc_TypeError,
     #if PY_MAJOR_VERSION < 3
@@ -82004,9 +81937,10 @@ invalid_keyword:
     return 0;
 }
 
+
+
 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
     PyObject *local_type, *local_value, *local_tb;
-#if CYTHON_COMPILING_IN_CPYTHON
     PyObject *tmp_type, *tmp_value, *tmp_tb;
     PyThreadState *tstate = PyThreadState_GET();
     local_type = tstate->curexc_type;
@@ -82015,27 +81949,19 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
     tstate->curexc_type = 0;
     tstate->curexc_value = 0;
     tstate->curexc_traceback = 0;
-#else
-    PyErr_Fetch(&local_type, &local_value, &local_tb);
-#endif
     PyErr_NormalizeException(&local_type, &local_value, &local_tb);
-#if CYTHON_COMPILING_IN_CPYTHON
     if (unlikely(tstate->curexc_type))
-#else
-    if (unlikely(PyErr_Occurred()))
-#endif
         goto bad;
     #if PY_MAJOR_VERSION >= 3
     if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
         goto bad;
     #endif
-    Py_INCREF(local_type);
-    Py_INCREF(local_value);
-    Py_INCREF(local_tb);
     *type = local_type;
     *value = local_value;
     *tb = local_tb;
-#if CYTHON_COMPILING_IN_CPYTHON
+    Py_INCREF(local_type);
+    Py_INCREF(local_value);
+    Py_INCREF(local_tb);
     tmp_type = tstate->exc_type;
     tmp_value = tstate->exc_value;
     tmp_tb = tstate->exc_traceback;
@@ -82043,13 +81969,10 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb)
     tstate->exc_value = local_value;
     tstate->exc_traceback = local_tb;
     /* Make sure tstate is in a consistent state when we XDECREF
-       these objects (DECREF may run arbitrary code). */
+       these objects (XDECREF may run arbitrary code). */
     Py_XDECREF(tmp_type);
     Py_XDECREF(tmp_value);
     Py_XDECREF(tmp_tb);
-#else
-    PyErr_SetExcInfo(local_type, local_value, local_tb);
-#endif
     return 0;
 bad:
     *type = 0;
@@ -82078,40 +82001,23 @@ static CYTHON_INLINE long __Pyx_mod_long(long a, long b) {
     return r;
 }
 
-static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
+static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
     PyErr_Format(PyExc_ValueError,
-                 "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
+                 "need more than %"PY_FORMAT_SIZE_T"d value%s to unpack",
+                 index, (index == 1) ? "" : "s");
 }
 
-static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
+static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
     PyErr_Format(PyExc_ValueError,
-                 "need more than %" CYTHON_FORMAT_SSIZE_T "d value%s to unpack",
-                 index, (index == 1) ? "" : "s");
+                 "too many values to unpack (expected %"PY_FORMAT_SIZE_T"d)", expected);
 }
 
-static CYTHON_INLINE int __Pyx_IterFinish(void) {
-#if CYTHON_COMPILING_IN_CPYTHON
-    PyThreadState *tstate = PyThreadState_GET();
-    PyObject* exc_type = tstate->curexc_type;
-    if (unlikely(exc_type)) {
-        if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) {
-            PyObject *exc_value, *exc_tb;
-            exc_value = tstate->curexc_value;
-            exc_tb = tstate->curexc_traceback;
-            tstate->curexc_type = 0;
-            tstate->curexc_value = 0;
-            tstate->curexc_traceback = 0;
-            Py_DECREF(exc_type);
-            Py_XDECREF(exc_value);
-            Py_XDECREF(exc_tb);
-            return 0;
-        } else {
-            return -1;
-        }
-    }
-    return 0;
-#else
-    if (unlikely(PyErr_Occurred())) {
+static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
+    if (unlikely(retval)) {
+        Py_DECREF(retval);
+        __Pyx_RaiseTooManyValuesError(expected);
+        return -1;
+    } else if (PyErr_Occurred()) {
         if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
             PyErr_Clear();
             return 0;
@@ -82120,25 +82026,12 @@ static CYTHON_INLINE int __Pyx_IterFinish(void) {
         }
     }
     return 0;
-#endif
 }
 
-static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
-    if (unlikely(retval)) {
-        Py_DECREF(retval);
-        __Pyx_RaiseTooManyValuesError(expected);
-        return -1;
-    } else {
-        return __Pyx_IterFinish();
-    }
-    return 0;
-}
+
 
 static double __Pyx__PyObject_AsDouble(PyObject* obj) {
     PyObject* float_value;
-#if CYTHON_COMPILING_IN_PYPY
-    float_value = PyNumber_Float(obj);
-#else
     if (Py_TYPE(obj)->tp_as_number && Py_TYPE(obj)->tp_as_number->nb_float) {
         return PyFloat_AsDouble(obj);
     } else if (PyUnicode_CheckExact(obj) || PyBytes_CheckExact(obj)) {
@@ -82155,7 +82048,6 @@ static double __Pyx__PyObject_AsDouble(PyObject* obj) {
         PyTuple_SET_ITEM(args, 0, 0);
         Py_DECREF(args);
     }
-#endif
     if (likely(float_value)) {
         double value = PyFloat_AS_DOUBLE(float_value);
         Py_DECREF(float_value);
@@ -82189,158 +82081,8 @@ static int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed
     return 0;
 }
 
-static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
-    PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
-}
-
-static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) {
-    if (t == Py_None) {
-      __Pyx_RaiseNoneNotIterableError();
-    } else if (PyTuple_GET_SIZE(t) < index) {
-      __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t));
-    } else {
-      __Pyx_RaiseTooManyValuesError(index);
-    }
-}
-
-static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2,
-                                             int is_tuple, int has_known_size, int decref_tuple) {
-    Py_ssize_t index;
-    PyObject *value1 = NULL, *value2 = NULL, *iter = NULL;
-    if (!is_tuple && unlikely(!PyTuple_Check(tuple))) {
-        iternextfunc iternext;
-        iter = PyObject_GetIter(tuple);
-        if (unlikely(!iter)) goto bad;
-        if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; }
-        iternext = Py_TYPE(iter)->tp_iternext;
-        value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; }
-        value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; }
-        if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad;
-        Py_DECREF(iter);
-    } else {
-        if (!has_known_size && unlikely(PyTuple_GET_SIZE(tuple) != 2)) {
-            __Pyx_UnpackTupleError(tuple, 2);
-            goto bad;
-        }
-#if CYTHON_COMPILING_IN_PYPY
-        value1 = PySequence_ITEM(tuple, 0);
-        if (unlikely(!value1)) goto bad;
-        value2 = PySequence_ITEM(tuple, 1);
-        if (unlikely(!value2)) goto bad;
-#else
-        value1 = PyTuple_GET_ITEM(tuple, 0);
-        value2 = PyTuple_GET_ITEM(tuple, 1);
-        Py_INCREF(value1);
-        Py_INCREF(value2);
-#endif
-        if (decref_tuple) { Py_DECREF(tuple); }
-    }
-    *pvalue1 = value1;
-    *pvalue2 = value2;
-    return 0;
-unpacking_failed:
-    if (!has_known_size && __Pyx_IterFinish() == 0)
-        __Pyx_RaiseNeedMoreValuesError(index);
-bad:
-    Py_XDECREF(iter);
-    Py_XDECREF(value1);
-    Py_XDECREF(value2);
-    if (decref_tuple) { Py_XDECREF(tuple); }
-    return -1;
-}
-
-static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name,
-                                                   Py_ssize_t* p_orig_length, int* p_source_is_dict) {
-    is_dict = is_dict || likely(PyDict_CheckExact(iterable));
-    *p_source_is_dict = is_dict;
-#if !CYTHON_COMPILING_IN_PYPY
-    if (is_dict) {
-        *p_orig_length = PyDict_Size(iterable);
-        Py_INCREF(iterable);
-        return iterable;
-    }
-#endif
-    *p_orig_length = 0;
-    if (method_name) {
-        PyObject* iter;
-        iterable = PyObject_CallMethodObjArgs(iterable, method_name, NULL);
-        if (!iterable)
-            return NULL;
-#if !CYTHON_COMPILING_IN_PYPY
-        if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable))
-            return iterable;
-#endif
-        iter = PyObject_GetIter(iterable);
-        Py_DECREF(iterable);
-        return iter;
-    }
-    return PyObject_GetIter(iterable);
-}
-static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* iter_obj, Py_ssize_t orig_length, Py_ssize_t* ppos,
-                                              PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) {
-    PyObject* next_item;
-#if !CYTHON_COMPILING_IN_PYPY
-    if (source_is_dict) {
-        PyObject *key, *value;
-        if (unlikely(orig_length != PyDict_Size(iter_obj))) {
-            PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration");
-            return -1;
-        }
-        if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) {
-            return 0;
-        }
-        if (pitem) {
-            PyObject* tuple = PyTuple_New(2);
-            if (unlikely(!tuple)) {
-                return -1;
-            }
-            Py_INCREF(key);
-            Py_INCREF(value);
-            PyTuple_SET_ITEM(tuple, 0, key);
-            PyTuple_SET_ITEM(tuple, 1, value);
-            *pitem = tuple;
-        } else {
-            if (pkey) {
-                Py_INCREF(key);
-                *pkey = key;
-            }
-            if (pvalue) {
-                Py_INCREF(value);
-                *pvalue = value;
-            }
-        }
-        return 1;
-    } else if (PyTuple_CheckExact(iter_obj)) {
-        Py_ssize_t pos = *ppos;
-        if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0;
-        *ppos = pos + 1;
-        next_item = PyTuple_GET_ITEM(iter_obj, pos);
-        Py_INCREF(next_item);
-    } else if (PyList_CheckExact(iter_obj)) {
-        Py_ssize_t pos = *ppos;
-        if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0;
-        *ppos = pos + 1;
-        next_item = PyList_GET_ITEM(iter_obj, pos);
-        Py_INCREF(next_item);
-    } else
-#endif
-    {
-        next_item = PyIter_Next(iter_obj);
-        if (unlikely(!next_item)) {
-            return __Pyx_IterFinish();
-        }
-    }
-    if (pitem) {
-        *pitem = next_item;
-    } else if (pkey && pvalue) {
-        if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1))
-            return -1;
-    } else if (pkey) {
-        *pkey = next_item;
-    } else {
-        *pvalue = next_item;
-    }
-    return 1;
+static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void) {
+    PyErr_SetString(PyExc_TypeError, "'NoneType' object is unsubscriptable");
 }
 
 static CYTHON_INLINE int __Pyx_div_int(int a, int b) {
@@ -82351,7 +82093,6 @@ static CYTHON_INLINE int __Pyx_div_int(int a, int b) {
 }
 
 static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) {
-#if CYTHON_COMPILING_IN_CPYTHON
     PyThreadState *tstate = PyThreadState_GET();
     *type = tstate->exc_type;
     *value = tstate->exc_value;
@@ -82359,12 +82100,8 @@ static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value,
     Py_XINCREF(*type);
     Py_XINCREF(*value);
     Py_XINCREF(*tb);
-#else
-    PyErr_GetExcInfo(type, value, tb);
-#endif
 }
 static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) {
-#if CYTHON_COMPILING_IN_CPYTHON
     PyObject *tmp_type, *tmp_value, *tmp_tb;
     PyThreadState *tstate = PyThreadState_GET();
     tmp_type = tstate->exc_type;
@@ -82376,9 +82113,6 @@ static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb)
     Py_XDECREF(tmp_type);
     Py_XDECREF(tmp_value);
     Py_XDECREF(tmp_tb);
-#else
-    PyErr_SetExcInfo(type, value, tb);
-#endif
 }
 
 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level) {
@@ -82459,6 +82193,78 @@ static CYTHON_INLINE void __Pyx_RaiseImportError(PyObject *name) {
 #endif
 }
 
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
+    if (s1 == s2) {
+        return (equals == Py_EQ);
+    } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
+        if (PyBytes_GET_SIZE(s1) != PyBytes_GET_SIZE(s2)) {
+            return (equals == Py_NE);
+        } else if (PyBytes_GET_SIZE(s1) == 1) {
+            if (equals == Py_EQ)
+                return (PyBytes_AS_STRING(s1)[0] == PyBytes_AS_STRING(s2)[0]);
+            else
+                return (PyBytes_AS_STRING(s1)[0] != PyBytes_AS_STRING(s2)[0]);
+        } else {
+            int result = memcmp(PyBytes_AS_STRING(s1), PyBytes_AS_STRING(s2), (size_t)PyBytes_GET_SIZE(s1));
+            return (equals == Py_EQ) ? (result == 0) : (result != 0);
+        }
+    } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
+        return (equals == Py_NE);
+    } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
+        return (equals == Py_NE);
+    } else {
+        int result;
+        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+        if (!py_result)
+            return -1;
+        result = __Pyx_PyObject_IsTrue(py_result);
+        Py_DECREF(py_result);
+        return result;
+    }
+}
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
+    if (s1 == s2) {
+        return (equals == Py_EQ);
+    } else if (PyUnicode_CheckExact(s1) & PyUnicode_CheckExact(s2)) {
+        #if CYTHON_PEP393_ENABLED
+        if ((PyUnicode_READY(s1) < 0) || (PyUnicode_READY(s2) < 0))
+            return -1;
+        if (PyUnicode_GET_LENGTH(s1) != PyUnicode_GET_LENGTH(s2)) {
+            return (equals == Py_NE);
+        } else if (PyUnicode_GET_LENGTH(s1) == 1) {
+            Py_UCS4 ch1 = PyUnicode_READ_CHAR(s1, 0);
+            Py_UCS4 ch2 = PyUnicode_READ_CHAR(s2, 0);
+            return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+        #else
+        if (PyUnicode_GET_SIZE(s1) != PyUnicode_GET_SIZE(s2)) {
+            return (equals == Py_NE);
+        } else if (PyUnicode_GET_SIZE(s1) == 1) {
+            Py_UNICODE ch1 = PyUnicode_AS_UNICODE(s1)[0];
+            Py_UNICODE ch2 = PyUnicode_AS_UNICODE(s2)[0];
+            return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+        #endif
+        } else {
+            int result = PyUnicode_Compare(s1, s2);
+            if ((result == -1) && unlikely(PyErr_Occurred()))
+                return -1;
+            return (equals == Py_EQ) ? (result == 0) : (result != 0);
+        }
+    } else if ((s1 == Py_None) & PyUnicode_CheckExact(s2)) {
+        return (equals == Py_NE);
+    } else if ((s2 == Py_None) & PyUnicode_CheckExact(s1)) {
+        return (equals == Py_NE);
+    } else {
+        int result;
+        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+        if (!py_result)
+            return -1;
+        result = __Pyx_PyObject_IsTrue(py_result);
+        Py_DECREF(py_result);
+        return result;
+    }
+}
+
 static PyObject *
 __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
 {
@@ -82739,56 +82545,6 @@ __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
                                PyString_AsString(func_name), (void *)op);
 #endif
 }
-#if CYTHON_COMPILING_IN_PYPY
-static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
-    PyCFunctionObject* f = (PyCFunctionObject*)func;
-    PyCFunction meth = PyCFunction_GET_FUNCTION(func);
-    PyObject *self = PyCFunction_GET_SELF(func);
-    Py_ssize_t size;
-    switch (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST)) {
-    case METH_VARARGS:
-        if (likely(kw == NULL) || PyDict_Size(kw) == 0)
-            return (*meth)(self, arg);
-        break;
-    case METH_VARARGS | METH_KEYWORDS:
-        return (*(PyCFunctionWithKeywords)meth)(self, arg, kw);
-    case METH_NOARGS:
-        if (likely(kw == NULL) || PyDict_Size(kw) == 0) {
-            size = PyTuple_GET_SIZE(arg);
-            if (size == 0)
-                return (*meth)(self, NULL);
-            PyErr_Format(PyExc_TypeError,
-                "%.200s() takes no arguments (%zd given)",
-                f->m_ml->ml_name, size);
-            return NULL;
-        }
-        break;
-    case METH_O:
-        if (likely(kw == NULL) || PyDict_Size(kw) == 0) {
-            size = PyTuple_GET_SIZE(arg);
-            if (size == 1)
-                return (*meth)(self, PyTuple_GET_ITEM(arg, 0));
-            PyErr_Format(PyExc_TypeError,
-                "%.200s() takes exactly one argument (%zd given)",
-                f->m_ml->ml_name, size);
-            return NULL;
-        }
-        break;
-    default:
-        PyErr_SetString(PyExc_SystemError, "Bad call flags in "
-                        "__Pyx_CyFunction_Call. METH_OLDARGS is no "
-                        "longer supported!");
-        return NULL;
-    }
-    PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments",
-                 f->m_ml->ml_name);
-    return NULL;
-}
-#else
-static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
-	return PyCFunction_Call(func, arg, kw);
-}
-#endif
 static PyTypeObject __pyx_CyFunctionType_type = {
     PyVarObject_HEAD_INIT(0, 0)
     __Pyx_NAMESTR("cython_function_or_method"), /*tp_name*/
@@ -82808,7 +82564,7 @@ static PyTypeObject __pyx_CyFunctionType_type = {
     0,                                  /*tp_as_sequence*/
     0,                                  /*tp_as_mapping*/
     0,                                  /*tp_hash*/
-    __Pyx_CyFunction_Call,              /*tp_call*/
+    __Pyx_PyCFunction_Call,             /*tp_call*/
     0,                                  /*tp_str*/
     0,                                  /*tp_getattro*/
     0,                                  /*tp_setattro*/
@@ -82844,16 +82600,15 @@ static PyTypeObject __pyx_CyFunctionType_type = {
     0,                                  /*tp_version_tag*/
 #endif
 };
-static int __Pyx_CyFunction_init(void) {
-#if !CYTHON_COMPILING_IN_PYPY
-    __pyx_CyFunctionType_type.tp_call = PyCFunction_Call;
-#endif
+static int __Pyx_CyFunction_init(void)
+{
     if (PyType_Ready(&__pyx_CyFunctionType_type) < 0)
         return -1;
     __pyx_CyFunctionType = &__pyx_CyFunctionType_type;
     return 0;
 }
-static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
+void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects)
+{
     __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
     m->defaults = PyMem_Malloc(size);
     if (!m->defaults)
@@ -82862,7 +82617,8 @@ static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t
     m->defaults_pyobjects = pyobjects;
     return m->defaults;
 }
-static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
+static void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple)
+{
     __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
     m->defaults_tuple = tuple;
     Py_INCREF(tuple);
@@ -83268,8 +83024,8 @@ static CYTHON_INLINE signed PY_LONG_LONG __Pyx_PyInt_AsSignedLongLong(PyObject*
     }
 }
 
-static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
-                                  CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename) {
+static void __Pyx_WriteUnraisable(const char *name, int clineno,
+                                  int lineno, const char *filename) {
     PyObject *old_exc, *old_val, *old_tb;
     PyObject *ctx;
     __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
@@ -83289,7 +83045,6 @@ static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
 
 static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) {
     PyObject *tmp_type, *tmp_value, *tmp_tb;
-#if CYTHON_COMPILING_IN_CPYTHON
     PyThreadState *tstate = PyThreadState_GET();
     tmp_type = tstate->exc_type;
     tmp_value = tstate->exc_value;
@@ -83297,10 +83052,6 @@ static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value,
     tstate->exc_type = *type;
     tstate->exc_value = *value;
     tstate->exc_traceback = *tb;
-#else
-    PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb);
-    PyErr_SetExcInfo(*type, *value, *tb);
-#endif
     *type = tmp_type;
     *value = tmp_value;
     *tb = tmp_tb;
@@ -83310,70 +83061,9 @@ static PyObject *__Pyx_Generator_Next(PyObject *self);
 static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value);
 static PyObject *__Pyx_Generator_Close(PyObject *self);
 static PyObject *__Pyx_Generator_Throw(PyObject *gen, PyObject *args);
-static PyTypeObject *__pyx_GeneratorType = 0;
-#define __Pyx_Generator_CheckExact(obj) (Py_TYPE(obj) == __pyx_GeneratorType)
-#define __Pyx_Generator_Undelegate(gen) Py_CLEAR((gen)->yieldfrom)
-#if 1 || PY_VERSION_HEX < 0x030300B0
-static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue) {
-    PyObject *et, *ev, *tb;
-    PyObject *value = NULL;
-    __Pyx_ErrFetch(&et, &ev, &tb);
-    if (!et) {
-        Py_XDECREF(tb);
-        Py_XDECREF(ev);
-        Py_INCREF(Py_None);
-        *pvalue = Py_None;
-        return 0;
-    }
-    if (unlikely(et != PyExc_StopIteration) &&
-            unlikely(!PyErr_GivenExceptionMatches(et, PyExc_StopIteration))) {
-        __Pyx_ErrRestore(et, ev, tb);
-        return -1;
-    }
-    if (likely(et == PyExc_StopIteration)) {
-        if (likely(!ev) || !PyObject_IsInstance(ev, PyExc_StopIteration)) {
-            if (!ev) {
-                Py_INCREF(Py_None);
-                ev = Py_None;
-            }
-            Py_XDECREF(tb);
-            Py_DECREF(et);
-            *pvalue = ev;
-            return 0;
-        }
-    }
-    PyErr_NormalizeException(&et, &ev, &tb);
-    if (unlikely(!PyObject_IsInstance(ev, PyExc_StopIteration))) {
-        __Pyx_ErrRestore(et, ev, tb);
-        return -1;
-    }
-    Py_XDECREF(tb);
-    Py_DECREF(et);
-#if PY_VERSION_HEX >= 0x030300A0
-    value = ((PyStopIterationObject *)ev)->value;
-    Py_INCREF(value);
-    Py_DECREF(ev);
-#else
-    {
-        PyObject* args = PyObject_GetAttrString(ev, "args");
-        Py_DECREF(ev);
-        if (likely(args)) {
-            value = PyObject_GetItem(args, 0);
-            Py_DECREF(args);
-        }
-        if (unlikely(!value)) {
-            __Pyx_ErrRestore(NULL, NULL, NULL);
-            Py_INCREF(Py_None);
-            value = Py_None;
-        }
-    }
-#endif
-    *pvalue = value;
-    return 0;
-}
-#endif
 static CYTHON_INLINE
-void __Pyx_Generator_ExceptionClear(__pyx_GeneratorObject *self) {
+void __Pyx_Generator_ExceptionClear(__pyx_GeneratorObject *self)
+{
     PyObject *exc_type = self->exc_type;
     PyObject *exc_value = self->exc_value;
     PyObject *exc_traceback = self->exc_traceback;
@@ -83385,18 +83075,14 @@ void __Pyx_Generator_ExceptionClear(__pyx_GeneratorObject *self) {
     Py_XDECREF(exc_traceback);
 }
 static CYTHON_INLINE
-int __Pyx_Generator_CheckRunning(__pyx_GeneratorObject *gen) {
-    if (unlikely(gen->is_running)) {
+PyObject *__Pyx_Generator_SendEx(__pyx_GeneratorObject *self, PyObject *value)
+{
+    PyObject *retval;
+    if (unlikely(self->is_running)) {
         PyErr_SetString(PyExc_ValueError,
                         "generator already executing");
-        return 1;
+        return NULL;
     }
-    return 0;
-}
-static CYTHON_INLINE
-PyObject *__Pyx_Generator_SendEx(__pyx_GeneratorObject *self, PyObject *value) {
-    PyObject *retval;
-    assert(!self->is_running);
     if (unlikely(self->resume_label == 0)) {
         if (unlikely(value && value != Py_None)) {
             PyErr_SetString(PyExc_TypeError,
@@ -83409,240 +83095,81 @@ PyObject *__Pyx_Generator_SendEx(__pyx_GeneratorObject *self, PyObject *value) {
         PyErr_SetNone(PyExc_StopIteration);
         return NULL;
     }
-    if (value) {
-#if CYTHON_COMPILING_IN_PYPY
-#else
-        /* Generators always return to their most recent caller, not
-         * necessarily their creator. */
-        if (self->exc_traceback) {
-            PyThreadState *tstate = PyThreadState_GET();
-            PyTracebackObject *tb = (PyTracebackObject *) self->exc_traceback;
-            PyFrameObject *f = tb->tb_frame;
-            Py_XINCREF(tstate->frame);
-            assert(f->f_back == NULL);
-            f->f_back = tstate->frame;
-        }
-#endif
-        __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value,
-                            &self->exc_traceback);
-    } else {
+    if (value)
+        __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value, &self->exc_traceback);
+    else
         __Pyx_Generator_ExceptionClear(self);
-    }
     self->is_running = 1;
     retval = self->body((PyObject *) self, value);
     self->is_running = 0;
-    if (retval) {
-        __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value,
-                            &self->exc_traceback);
-#if CYTHON_COMPILING_IN_PYPY
-#else
-        /* Don't keep the reference to f_back any longer than necessary.  It
-         * may keep a chain of frames alive or it could create a reference
-         * cycle. */
-        if (self->exc_traceback) {
-            PyTracebackObject *tb = (PyTracebackObject *) self->exc_traceback;
-            PyFrameObject *f = tb->tb_frame;
-            Py_CLEAR(f->f_back);
-        }
-#endif
-    } else {
+    if (retval)
+        __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value, &self->exc_traceback);
+    else
         __Pyx_Generator_ExceptionClear(self);
-    }
     return retval;
 }
-static CYTHON_INLINE
-PyObject *__Pyx_Generator_FinishDelegation(__pyx_GeneratorObject *gen) {
-    PyObject *ret;
-    PyObject *val = NULL;
-    __Pyx_Generator_Undelegate(gen);
-    __Pyx_PyGen_FetchStopIterationValue(&val);
-    ret = __Pyx_Generator_SendEx(gen, val);
-    Py_XDECREF(val);
-    return ret;
-}
-static PyObject *__Pyx_Generator_Next(PyObject *self) {
-    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject*) self;
-    PyObject *yf = gen->yieldfrom;
-    if (unlikely(__Pyx_Generator_CheckRunning(gen)))
-        return NULL;
-    if (yf) {
-        PyObject *ret;
-        gen->is_running = 1;
-        ret = Py_TYPE(yf)->tp_iternext(yf);
-        gen->is_running = 0;
-        if (likely(ret)) {
-            return ret;
-        }
-        return __Pyx_Generator_FinishDelegation(gen);
-    }
-    return __Pyx_Generator_SendEx(gen, Py_None);
-}
-static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value) {
-    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject*) self;
-    PyObject *yf = gen->yieldfrom;
-    if (unlikely(__Pyx_Generator_CheckRunning(gen)))
-        return NULL;
-    if (yf) {
-        PyObject *ret;
-        gen->is_running = 1;
-        if (__Pyx_Generator_CheckExact(yf)) {
-            ret = __Pyx_Generator_Send(yf, value);
-        } else {
-            if (value == Py_None)
-                ret = PyIter_Next(yf);
-            else
-                ret = PyObject_CallMethod(yf, (char*)"send", (char*)"O", value);
-        }
-        gen->is_running = 0;
-        if (likely(ret)) {
-            return ret;
-        }
-        return __Pyx_Generator_FinishDelegation(gen);
-    }
-    return __Pyx_Generator_SendEx(gen, value);
+static PyObject *__Pyx_Generator_Next(PyObject *self)
+{
+    return __Pyx_Generator_SendEx((__pyx_GeneratorObject *) self, Py_None);
 }
-static int __Pyx_Generator_CloseIter(__pyx_GeneratorObject *gen, PyObject *yf) {
-    PyObject *retval = NULL;
-    int err = 0;
-    if (__Pyx_Generator_CheckExact(yf)) {
-        retval = __Pyx_Generator_Close(yf);
-        if (!retval)
-            return -1;
-    } else {
-        PyObject *meth;
-        gen->is_running = 1;
-        meth = PyObject_GetAttrString(yf, "close");
-        if (unlikely(!meth)) {
-            if (!PyErr_ExceptionMatches(PyExc_AttributeError)) {
-                PyErr_WriteUnraisable(yf);
-            }
-            PyErr_Clear();
-        } else {
-            retval = PyObject_CallFunction(meth, NULL);
-            Py_DECREF(meth);
-            if (!retval)
-                err = -1;
-        }
-        gen->is_running = 0;
-    }
-    Py_XDECREF(retval);
-    return err;
+static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value)
+{
+    return __Pyx_Generator_SendEx((__pyx_GeneratorObject *) self, value);
 }
-static PyObject *__Pyx_Generator_Close(PyObject *self) {
-    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
-    PyObject *retval, *raised_exception;
-    PyObject *yf = gen->yieldfrom;
-    int err = 0;
-    if (unlikely(__Pyx_Generator_CheckRunning(gen)))
-        return NULL;
-    if (yf) {
-        Py_INCREF(yf);
-        err = __Pyx_Generator_CloseIter(gen, yf);
-        __Pyx_Generator_Undelegate(gen);
-        Py_DECREF(yf);
-    }
-    if (err == 0)
+static PyObject *__Pyx_Generator_Close(PyObject *self)
+{
+    __pyx_GeneratorObject *generator = (__pyx_GeneratorObject *) self;
+    PyObject *retval;
 #if PY_VERSION_HEX < 0x02050000
-        PyErr_SetNone(PyExc_StopIteration);
+    PyErr_SetNone(PyExc_StopIteration);
 #else
-        PyErr_SetNone(PyExc_GeneratorExit);
+    PyErr_SetNone(PyExc_GeneratorExit);
 #endif
-    retval = __Pyx_Generator_SendEx(gen, NULL);
+    retval = __Pyx_Generator_SendEx(generator, NULL);
     if (retval) {
         Py_DECREF(retval);
         PyErr_SetString(PyExc_RuntimeError,
                         "generator ignored GeneratorExit");
         return NULL;
     }
-    raised_exception = PyErr_Occurred();
-    if (!raised_exception
-        || raised_exception == PyExc_StopIteration
-#if PY_VERSION_HEX >= 0x02050000
-        || raised_exception == PyExc_GeneratorExit
-        || PyErr_GivenExceptionMatches(raised_exception, PyExc_GeneratorExit)
+#if PY_VERSION_HEX < 0x02050000
+    if (PyErr_ExceptionMatches(PyExc_StopIteration))
+#else
+    if (PyErr_ExceptionMatches(PyExc_StopIteration)
+        || PyErr_ExceptionMatches(PyExc_GeneratorExit))
 #endif
-        || PyErr_GivenExceptionMatches(raised_exception, PyExc_StopIteration))
     {
-        if (raised_exception) PyErr_Clear();      /* ignore these errors */
+        PyErr_Clear();          /* ignore these errors */
         Py_INCREF(Py_None);
         return Py_None;
     }
     return NULL;
 }
-static PyObject *__Pyx_Generator_Throw(PyObject *self, PyObject *args) {
-    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
+static PyObject *__Pyx_Generator_Throw(PyObject *self, PyObject *args)
+{
+    __pyx_GeneratorObject *generator = (__pyx_GeneratorObject *) self;
     PyObject *typ;
     PyObject *tb = NULL;
     PyObject *val = NULL;
-    PyObject *yf = gen->yieldfrom;
     if (!PyArg_UnpackTuple(args, (char *)"throw", 1, 3, &typ, &val, &tb))
         return NULL;
-    if (unlikely(__Pyx_Generator_CheckRunning(gen)))
-        return NULL;
-    if (yf) {
-        PyObject *ret;
-        Py_INCREF(yf);
-#if PY_VERSION_HEX >= 0x02050000
-        if (PyErr_GivenExceptionMatches(typ, PyExc_GeneratorExit)) {
-            int err = __Pyx_Generator_CloseIter(gen, yf);
-            Py_DECREF(yf);
-            __Pyx_Generator_Undelegate(gen);
-            if (err < 0)
-                return __Pyx_Generator_SendEx(gen, NULL);
-            goto throw_here;
-        }
-#endif
-        gen->is_running = 1;
-        if (__Pyx_Generator_CheckExact(yf)) {
-            ret = __Pyx_Generator_Throw(yf, args);
-        } else {
-            PyObject *meth = PyObject_GetAttrString(yf, "throw");
-            if (unlikely(!meth)) {
-                Py_DECREF(yf);
-                if (!PyErr_ExceptionMatches(PyExc_AttributeError)) {
-                    gen->is_running = 0;
-                    return NULL;
-                }
-                PyErr_Clear();
-                __Pyx_Generator_Undelegate(gen);
-                gen->is_running = 0;
-                goto throw_here;
-            }
-            ret = PyObject_CallObject(meth, args);
-            Py_DECREF(meth);
-        }
-        gen->is_running = 0;
-        Py_DECREF(yf);
-        if (!ret) {
-            ret = __Pyx_Generator_FinishDelegation(gen);
-        }
-        return ret;
-    }
-throw_here:
     __Pyx_Raise(typ, val, tb, NULL);
-    return __Pyx_Generator_SendEx(gen, NULL);
+    return __Pyx_Generator_SendEx(generator, NULL);
 }
-static int __Pyx_Generator_traverse(PyObject *self, visitproc visit, void *arg) {
+static int
+__Pyx_Generator_traverse(PyObject *self, visitproc visit, void *arg)
+{
     __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
     Py_VISIT(gen->closure);
     Py_VISIT(gen->classobj);
-    Py_VISIT(gen->yieldfrom);
     Py_VISIT(gen->exc_type);
     Py_VISIT(gen->exc_value);
     Py_VISIT(gen->exc_traceback);
     return 0;
 }
-static int __Pyx_Generator_clear(PyObject *self) {
-    __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
-    Py_CLEAR(gen->closure);
-    Py_CLEAR(gen->classobj);
-    Py_CLEAR(gen->yieldfrom);
-    Py_CLEAR(gen->exc_type);
-    Py_CLEAR(gen->exc_value);
-    Py_CLEAR(gen->exc_traceback);
-    return 0;
-}
-static void __Pyx_Generator_dealloc(PyObject *self) {
+static void
+__Pyx_Generator_dealloc(PyObject *self)
+{
     __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
     PyObject_GC_UnTrack(gen);
     if (gen->gi_weakreflist != NULL)
@@ -83654,10 +83181,16 @@ static void __Pyx_Generator_dealloc(PyObject *self) {
             return;                     /* resurrected.  :( */
     }
     PyObject_GC_UnTrack(self);
-    __Pyx_Generator_clear(self);
+    Py_CLEAR(gen->closure);
+    Py_CLEAR(gen->classobj);
+    Py_CLEAR(gen->exc_type);
+    Py_CLEAR(gen->exc_value);
+    Py_CLEAR(gen->exc_traceback);
     PyObject_GC_Del(gen);
 }
-static void __Pyx_Generator_del(PyObject *self) {
+static void
+__Pyx_Generator_del(PyObject *self)
+{
     PyObject *res;
     PyObject *error_type, *error_value, *error_traceback;
     __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
@@ -83686,13 +83219,11 @@ static void __Pyx_Generator_del(PyObject *self) {
         _Py_NewReference(self);
         self->ob_refcnt = refcnt;
     }
-#if CYTHON_COMPILING_FOR_CPYTHON
     assert(PyType_IS_GC(self->ob_type) &&
            _Py_AS_GC(self)->gc.gc_refs != _PyGC_REFS_UNTRACKED);
     /* If Py_REF_DEBUG, _Py_NewReference bumped _Py_RefTotal, so
      * we need to undo that. */
     _Py_DEC_REFTOTAL;
-#endif
     /* If Py_TRACE_REFS, _Py_NewReference re-added self to the object
      * chain, so no more to do there.
      * If COUNT_ALLOCS, the original decref bumped tp_frees, and
@@ -83700,17 +83231,13 @@ static void __Pyx_Generator_del(PyObject *self) {
      * undone.
      */
 #ifdef COUNT_ALLOCS
-    --Py_TYPE(self)->tp_frees;
-    --Py_TYPE(self)->tp_allocs;
+    --self->ob_type->tp_frees;
+    --self->ob_type->tp_allocs;
 #endif
 }
 static PyMemberDef __pyx_Generator_memberlist[] = {
     {(char *) "gi_running",
-#if PY_VERSION_HEX >= 0x02060000
-     T_BOOL,
-#else
-     T_BYTE,
-#endif
+     T_INT,
      offsetof(__pyx_GeneratorObject, is_running),
      READONLY,
      NULL},
@@ -83722,7 +83249,7 @@ static PyMethodDef __pyx_Generator_methods[] = {
     {__Pyx_NAMESTR("close"), (PyCFunction) __Pyx_Generator_Close, METH_NOARGS, 0},
     {0, 0, 0, 0}
 };
-static PyTypeObject __pyx_GeneratorType_type = {
+static PyTypeObject __pyx_GeneratorType = {
     PyVarObject_HEAD_INIT(0, 0)
     __Pyx_NAMESTR("generator"),         /*tp_name*/
     sizeof(__pyx_GeneratorObject),      /*tp_basicsize*/
@@ -83743,7 +83270,7 @@ static PyTypeObject __pyx_GeneratorType_type = {
     0,                                  /*tp_hash*/
     0,                                  /*tp_call*/
     0,                                  /*tp_str*/
-    0,                                  /*tp_getattro*/
+    PyObject_GenericGetAttr,            /*tp_getattro*/
     0,                                  /*tp_setattro*/
     0,                                  /*tp_as_buffer*/
     Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC, /* tp_flags*/
@@ -83752,7 +83279,7 @@ static PyTypeObject __pyx_GeneratorType_type = {
     0,                                  /*tp_clear*/
     0,                                  /*tp_richcompare*/
     offsetof(__pyx_GeneratorObject, gi_weakreflist), /* tp_weaklistoffse */
-    0,                                  /*tp_iter*/
+    PyObject_SelfIter,                  /*tp_iter*/
     (iternextfunc) __Pyx_Generator_Next, /*tp_iternext*/
     __pyx_Generator_methods,            /*tp_methods*/
     __pyx_Generator_memberlist,         /*tp_members*/
@@ -83777,10 +83304,12 @@ static PyTypeObject __pyx_GeneratorType_type = {
     0,                                  /*tp_version_tag*/
 #endif
 };
-static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
-                                                  PyObject *closure) {
+static
+__pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
+                                           PyObject *closure)
+{
     __pyx_GeneratorObject *gen =
-        PyObject_GC_New(__pyx_GeneratorObject, &__pyx_GeneratorType_type);
+        PyObject_GC_New(__pyx_GeneratorObject, &__pyx_GeneratorType);
     if (gen == NULL)
         return NULL;
     gen->body = body;
@@ -83789,7 +83318,6 @@ static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
     gen->is_running = 0;
     gen->resume_label = 0;
     gen->classobj = NULL;
-    gen->yieldfrom = NULL;
     gen->exc_type = NULL;
     gen->exc_value = NULL;
     gen->exc_traceback = NULL;
@@ -83797,14 +83325,9 @@ static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
     PyObject_GC_Track(gen);
     return gen;
 }
-static int __pyx_Generator_init(void) {
-    __pyx_GeneratorType_type.tp_getattro = PyObject_GenericGetAttr;
-    __pyx_GeneratorType_type.tp_iter = PyObject_SelfIter;
-    if (PyType_Ready(&__pyx_GeneratorType_type)) {
-        return -1;
-    }
-    __pyx_GeneratorType = &__pyx_GeneratorType_type;
-    return 0;
+static int __pyx_Generator_init(void)
+{
+    return PyType_Ready(&__pyx_GeneratorType);
 }
 
 static int __Pyx_check_binary_version(void) {
diff --git a/python/src/sa/_sa.pyx b/python/src/sa/_sa.pyx
index 50da4235..4716d174 100644
--- a/python/src/sa/_sa.pyx
+++ b/python/src/sa/_sa.pyx
@@ -2,7 +2,7 @@ import logging
 import resource
 import gzip
 
-cdef float monitor_cpu():
+def monitor_cpu():
     return (resource.getrusage(resource.RUSAGE_SELF).ru_utime+
             resource.getrusage(resource.RUSAGE_SELF).ru_stime)
 
diff --git a/python/src/sa/rulefactory.pxi b/python/src/sa/rulefactory.pxi
index 7063c2da..559e8396 100644
--- a/python/src/sa/rulefactory.pxi
+++ b/python/src/sa/rulefactory.pxi
@@ -260,6 +260,7 @@ cdef class HieroCachingRuleFactory:
 
     cdef prev_norm_prefix
     cdef float extract_time
+    cdef float intersect_time
     cdef SuffixArray fsa
     cdef DataArray fda
     cdef DataArray eda
@@ -979,10 +980,11 @@ cdef class HieroCachingRuleFactory:
         cdef IntList sample, chunklen
         cdef Matching matching
         cdef Phrase hiero_phrase
-        
+
         flen = len(fwords)
         start_time = monitor_cpu()
         self.extract_time = 0.0
+        self.intersect_time = 0.0
         nodes_isteps_away_buffer = {}
         hit = 0
         reachable_buffer = {}
@@ -1072,7 +1074,10 @@ cdef class HieroCachingRuleFactory:
                     else:
                         if arity > 0:
                             # Intersecting because of arity > 0
+                            intersect_start_time = monitor_cpu()
                             phrase_location = self.intersect(node, node.suffix_link.children[word_id], hiero_phrase)
+                            intersect_stop_time = monitor_cpu()
+                            self.intersect_time += intersect_stop_time - intersect_start_time
                         else:
                             # Suffix array search
                             phrase_location = node.phrase_location
@@ -1203,6 +1208,7 @@ cdef class HieroCachingRuleFactory:
         logger.info("Total time for rule lookup, extraction, and scoring = %f seconds", (stop_time - start_time))
         gc.collect()
         logger.info("    Extract time = %f seconds", self.extract_time)
+        logger.info("    Intersect time = %f seconds", self.intersect_time)
 
 
     cdef int find_fixpoint(self, 
@@ -1674,7 +1680,6 @@ cdef class HieroCachingRuleFactory:
                         for (phrase2,eindexes) in phrase_list:
                             als1 = self.create_alignments(sent_links,num_links,self.findexes,eindexes)        
                             extracts.append((fphr, phrase2, pair_count, tuple(als1)))
-
                     if (num_gaps < self.max_nonterminals and
                         phrase_len < self.max_length and
                         f_back_high - f_back_low + self.train_min_gap_size <= self.train_max_initial_size):
@@ -1690,12 +1695,12 @@ cdef class HieroCachingRuleFactory:
                                 met_constraints = 0
 
                             if (met_constraints and
-                                self.find_fixpoint(f_x_low, f_back_high,
+                                (self.find_fixpoint(f_x_low, f_back_high,
                                             f_links_low, f_links_high, e_links_low, e_links_high, 
                                             e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high, 
                                             f_sent_len, e_sent_len, 
                                             self.train_max_initial_size, self.train_max_initial_size, 
-                                            1, 1, 1, 1, 0, 1, 0) and
+                                            1, 1, 1, 1, 0, 1, 0) == 1) and
                                 ((not self.tight_phrases) or f_links_low[f_x_low] != -1) and
                                 self.find_fixpoint(f_x_low, f_low,    # check integrity of new subphrase
                                             f_links_low, f_links_high, e_links_low, e_links_high,
@@ -1809,12 +1814,12 @@ cdef class HieroCachingRuleFactory:
                                 met_constraints = 0
 
                             if (met_constraints and
-                                self.find_fixpoint(f_x_low, f_x_high,
+                                (self.find_fixpoint(f_x_low, f_x_high,
                                                 f_links_low, f_links_high, e_links_low, e_links_high,
                                                 e_low, e_high, &e_x_low, &e_x_high, &f_x_low, &f_x_high, 
                                                 f_sent_len, e_sent_len,
                                                 self.train_max_initial_size, self.train_max_initial_size, 
-                                                1, 1, 2, 1, 1, 1, 1) and
+                                                1, 1, 2, 1, 1, 1, 1) == 1) and
                                 ((not self.tight_phrases) or (f_links_low[f_x_low] != -1 and f_links_low[f_x_high-1] != -1)) and
                                 self.find_fixpoint(f_x_low, f_low,
                                                 f_links_low, f_links_high, e_links_low, e_links_high,