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authorChris Dyer <cdyer@cs.cmu.edu>2012-07-28 18:35:20 -0400
committerChris Dyer <cdyer@cs.cmu.edu>2012-07-28 18:35:20 -0400
commit4d094af06cc0c1105a0a9c843c2b642c960711ac (patch)
tree899f19d410ff530de32165700712a75ed6a45449 /python
parentdf4a193f16f6966c83c608adbb5b0680a626ce9f (diff)
parent2ed119792bc81f56b682613cbacab8aef8a693da (diff)
Merge branch 'master' of github.com:redpony/cdec
Diffstat (limited to 'python')
-rw-r--r--python/pkg/cdec/sa/compile.py24
l---------python/src/cdec.sa._sa.pxd1
-rw-r--r--python/src/sa/_sa.c3913
-rw-r--r--python/src/sa/data_array.pxi38
-rw-r--r--python/src/sa/suffix_array.pxi8
5 files changed, 2591 insertions, 1393 deletions
diff --git a/python/pkg/cdec/sa/compile.py b/python/pkg/cdec/sa/compile.py
index 30e605a6..2a89243b 100644
--- a/python/pkg/cdec/sa/compile.py
+++ b/python/pkg/cdec/sa/compile.py
@@ -37,16 +37,22 @@ def main():
help='Number of pre-computed super-frequent patterns)')
parser.add_argument('-c', '--config', default='/dev/stdout',
help='Output configuration')
- parser.add_argument('-o', '--output', required=True,
- help='Output path')
- parser.add_argument('-f', '--source', required=True,
+ parser.add_argument('-f', '--source',
help='Source language corpus')
- parser.add_argument('-e', '--target', required=True,
+ parser.add_argument('-e', '--target',
help='Target language corpus')
+ parser.add_argument('-b', '--bitext',
+ help='Parallel text (source ||| target)')
parser.add_argument('-a', '--alignment', required=True,
help='Bitext word alignment')
+ parser.add_argument('-o', '--output', required=True,
+ help='Output path')
args = parser.parse_args()
+ if not ((args.source and args.target) or args.bitext):
+ parser.error('a parallel corpus is required\n'
+ '\tuse -f (source) with -e (target) or -b (bitext)')
+
param_names = ("max_len", "max_nt", "max_size", "min_gap", "rank1", "rank2")
params = (args.maxlen, args.maxnt, args.maxsize, args.mingap, args.rank1, args.rank2)
@@ -61,11 +67,17 @@ def main():
lex_bin = os.path.join(args.output, 'lex.bin')
logger.info('Compiling source suffix array')
- f_sa = cdec.sa.SuffixArray(from_text=args.source)
+ if args.bitext:
+ f_sa = cdec.sa.SuffixArray(from_text=args.bitext, side='source')
+ else:
+ f_sa = cdec.sa.SuffixArray(from_text=args.source)
f_sa.write_binary(f_sa_bin)
logger.info('Compiling target data array')
- e = cdec.sa.DataArray(from_text=args.target)
+ if args.bitext:
+ e = cdec.sa.DataArray(from_text=args.bitext, side='target')
+ else:
+ e = cdec.sa.DataArray(from_text=args.target)
e.write_binary(e_bin)
logger.info('Precomputing frequent phrases')
diff --git a/python/src/cdec.sa._sa.pxd b/python/src/cdec.sa._sa.pxd
new file mode 120000
index 00000000..3613f643
--- /dev/null
+++ b/python/src/cdec.sa._sa.pxd
@@ -0,0 +1 @@
+sa/_sa.pxd \ No newline at end of file
diff --git a/python/src/sa/_sa.c b/python/src/sa/_sa.c
index b7f3627a..0f9b0d22 100644
--- a/python/src/sa/_sa.c
+++ b/python/src/sa/_sa.c
@@ -1,4 +1,4 @@
-/* Generated by Cython 0.17.beta1 on Fri Jul 27 23:31:04 2012 */
+/* Generated by Cython 0.17.beta1 on Sat Jul 28 17:07:03 2012 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
@@ -383,6 +383,7 @@ static const char *__pyx_f[] = {
/*--- Type declarations ---*/
struct __pyx_obj_3_sa_HieroCachingRuleFactory;
+struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats;
struct __pyx_obj_3_sa_IntList;
struct __pyx_obj_3_sa_VEBIterator;
struct __pyx_obj_3_sa_BiLex;
@@ -390,23 +391,24 @@ struct __pyx_obj_3_sa_VEB;
struct __pyx_obj_3_sa_LCP;
struct __pyx_obj_3_sa_DataArray;
struct __pyx_obj_3_sa_BitSetIterator;
+struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext;
struct __pyx_obj_3_sa_Precomputation;
struct __pyx_obj_3_sa_SuffixArray;
+struct __pyx_obj_3_sa___pyx_scope_struct_4_input;
struct __pyx_obj_3_sa_Alphabet;
struct __pyx_obj_3_sa_Rule;
struct __pyx_obj_3_sa_PhraseLocation;
-struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats;
-struct __pyx_obj_3_sa___pyx_scope_struct_2_input;
+struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__;
struct __pyx_obj_3_sa_Alignment;
struct __pyx_obj_3_sa_BitSet;
struct __pyx_obj_3_sa_Sampler;
struct __pyx_obj_3_sa_StringMap;
-struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__;
struct __pyx_obj_3_sa_TrieNode;
struct __pyx_obj_3_sa_ExtendedTrieNode;
struct __pyx_obj_3_sa_TrieMap;
struct __pyx_obj_3_sa_Phrase;
struct __pyx_obj_3_sa_TrieTable;
+struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr;
struct __pyx_obj_3_sa_FloatList;
struct __pyx_t_3_sa__node;
struct __pyx_t_3_sa__BitSet;
@@ -563,6 +565,37 @@ struct __pyx_obj_3_sa_HieroCachingRuleFactory {
};
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/lcp.pxi":36
+ * logger.info("LCP array completed")
+ *
+ * def compute_stats(self, int max_n): # <<<<<<<<<<<<<<
+ * """Note: the output of this function is not exact. In
+ * particular, the frequency associated with each word is
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats {
+ PyObject_HEAD
+ int __pyx_v_N;
+ int __pyx_v_freq;
+ int __pyx_v_h;
+ int __pyx_v_i;
+ int __pyx_v_ii;
+ int __pyx_v_iii;
+ int __pyx_v_j;
+ int __pyx_v_k;
+ int __pyx_v_max_n;
+ int __pyx_v_n;
+ PyObject *__pyx_v_ngram;
+ struct __pyx_obj_3_sa_IntList *__pyx_v_ngram_start;
+ PyObject *__pyx_v_ngram_starts;
+ int __pyx_v_rs;
+ struct __pyx_obj_3_sa_IntList *__pyx_v_run_start;
+ struct __pyx_obj_3_sa_LCP *__pyx_v_self;
+ int __pyx_v_valid;
+ struct __pyx_obj_3_sa_VEB *__pyx_v_veb;
+ int __pyx_t_0;
+};
+
+
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/int_list.pxi":9
* from libc.string cimport memset, memcpy
*
@@ -676,6 +709,20 @@ struct __pyx_obj_3_sa_BitSetIterator {
};
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":71
+ * self.read_text_data(fp)
+ *
+ * def read_bitext(self, char* filename, int side): # <<<<<<<<<<<<<<
+ * with gzip_or_text(filename) as fp:
+ * data = (line.split(' ||| ')[side] for line in fp)
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext {
+ PyObject_HEAD
+ PyObject *__pyx_v_fp;
+ int __pyx_v_side;
+};
+
+
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/precomputation.pxi":188
*
*
@@ -713,84 +760,6 @@ struct __pyx_obj_3_sa_SuffixArray {
};
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi":7
- * cdef int INDEX_MASK = (1<<INDEX_SHIFT)-1
- *
- * cdef class Alphabet: # <<<<<<<<<<<<<<
- * cdef readonly StringMap terminals, nonterminals
- * cdef int first_nonterminal, last_nonterminal
- */
-struct __pyx_obj_3_sa_Alphabet {
- PyObject_HEAD
- struct __pyx_vtabstruct_3_sa_Alphabet *__pyx_vtab;
- struct __pyx_obj_3_sa_StringMap *terminals;
- struct __pyx_obj_3_sa_StringMap *nonterminals;
- int first_nonterminal;
- int last_nonterminal;
- PyObject *id2sym;
-};
-
-struct __pyx_obj_3_sa_Rule {
- PyObject_HEAD
- int lhs;
- struct __pyx_obj_3_sa_Phrase *f;
- struct __pyx_obj_3_sa_Phrase *e;
- float *cscores;
- int n_scores;
- PyObject *word_alignments;
-};
-
-
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":56
- * # in the suffix array; if discontiguous, it is the set of
- * # actual locations (packed into an array)
- * cdef class PhraseLocation: # <<<<<<<<<<<<<<
- * cdef int sa_low
- * cdef int sa_high
- */
-struct __pyx_obj_3_sa_PhraseLocation {
- PyObject_HEAD
- struct __pyx_vtabstruct_3_sa_PhraseLocation *__pyx_vtab;
- int sa_low;
- int sa_high;
- int arr_low;
- int arr_high;
- struct __pyx_obj_3_sa_IntList *arr;
- int num_subpatterns;
-};
-
-
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/lcp.pxi":36
- * logger.info("LCP array completed")
- *
- * def compute_stats(self, int max_n): # <<<<<<<<<<<<<<
- * """Note: the output of this function is not exact. In
- * particular, the frequency associated with each word is
- */
-struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats {
- PyObject_HEAD
- int __pyx_v_N;
- int __pyx_v_freq;
- int __pyx_v_h;
- int __pyx_v_i;
- int __pyx_v_ii;
- int __pyx_v_iii;
- int __pyx_v_j;
- int __pyx_v_k;
- int __pyx_v_max_n;
- int __pyx_v_n;
- PyObject *__pyx_v_ngram;
- struct __pyx_obj_3_sa_IntList *__pyx_v_ngram_start;
- PyObject *__pyx_v_ngram_starts;
- int __pyx_v_rs;
- struct __pyx_obj_3_sa_IntList *__pyx_v_run_start;
- struct __pyx_obj_3_sa_LCP *__pyx_v_self;
- int __pyx_v_valid;
- struct __pyx_obj_3_sa_VEB *__pyx_v_veb;
- int __pyx_t_0;
-};
-
-
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":919
* return sorted(result);
*
@@ -798,7 +767,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats {
* '''When this function is called on the RuleFactory,
* it looks up all of the rules that can be used to translate
*/
-struct __pyx_obj_3_sa___pyx_scope_struct_2_input {
+struct __pyx_obj_3_sa___pyx_scope_struct_4_input {
PyObject_HEAD
PyObject *__pyx_v_alignment;
PyObject *__pyx_v_als;
@@ -877,6 +846,68 @@ struct __pyx_obj_3_sa___pyx_scope_struct_2_input {
};
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi":7
+ * cdef int INDEX_MASK = (1<<INDEX_SHIFT)-1
+ *
+ * cdef class Alphabet: # <<<<<<<<<<<<<<
+ * cdef readonly StringMap terminals, nonterminals
+ * cdef int first_nonterminal, last_nonterminal
+ */
+struct __pyx_obj_3_sa_Alphabet {
+ PyObject_HEAD
+ struct __pyx_vtabstruct_3_sa_Alphabet *__pyx_vtab;
+ struct __pyx_obj_3_sa_StringMap *terminals;
+ struct __pyx_obj_3_sa_StringMap *nonterminals;
+ int first_nonterminal;
+ int last_nonterminal;
+ PyObject *id2sym;
+};
+
+struct __pyx_obj_3_sa_Rule {
+ PyObject_HEAD
+ int lhs;
+ struct __pyx_obj_3_sa_Phrase *f;
+ struct __pyx_obj_3_sa_Phrase *e;
+ float *cscores;
+ int n_scores;
+ PyObject *word_alignments;
+};
+
+
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":56
+ * # in the suffix array; if discontiguous, it is the set of
+ * # actual locations (packed into an array)
+ * cdef class PhraseLocation: # <<<<<<<<<<<<<<
+ * cdef int sa_low
+ * cdef int sa_high
+ */
+struct __pyx_obj_3_sa_PhraseLocation {
+ PyObject_HEAD
+ struct __pyx_vtabstruct_3_sa_PhraseLocation *__pyx_vtab;
+ int sa_low;
+ int sa_high;
+ int arr_low;
+ int arr_high;
+ struct __pyx_obj_3_sa_IntList *arr;
+ int num_subpatterns;
+};
+
+
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rule.pxi":141
+ * return self.syms[i]
+ *
+ * def __iter__(self): # <<<<<<<<<<<<<<
+ * cdef int i
+ * for i from 0 <= i < self.n:
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ {
+ PyObject_HEAD
+ int __pyx_v_i;
+ struct __pyx_obj_3_sa_Phrase *__pyx_v_self;
+ int __pyx_t_0;
+};
+
+
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/alignment.pxi":8
* # May need to revisit if things get really tight, though.
*
@@ -933,21 +964,6 @@ struct __pyx_obj_3_sa_StringMap {
};
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rule.pxi":141
- * return self.syms[i]
- *
- * def __iter__(self): # <<<<<<<<<<<<<<
- * cdef int i
- * for i from 0 <= i < self.n:
- */
-struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ {
- PyObject_HEAD
- int __pyx_v_i;
- struct __pyx_obj_3_sa_Phrase *__pyx_v_self;
- int __pyx_t_0;
-};
-
-
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":18
* cdef int EPSILON = sym_fromstring('*EPS*', True)
*
@@ -1021,6 +1037,23 @@ struct __pyx_obj_3_sa_TrieTable {
};
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":73
+ * def read_bitext(self, char* filename, int side):
+ * with gzip_or_text(filename) as fp:
+ * data = (line.split(' ||| ')[side] for line in fp) # <<<<<<<<<<<<<<
+ * self.read_text_data(data)
+ *
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr {
+ PyObject_HEAD
+ struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *__pyx_outer_scope;
+ PyObject *__pyx_v_line;
+ PyObject *__pyx_t_0;
+ Py_ssize_t __pyx_t_1;
+ PyObject *(*__pyx_t_2)(PyObject *);
+};
+
+
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/float_list.pxi":9
* from libc.string cimport memset, strcpy, strlen
*
@@ -1539,6 +1572,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
+static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname);
+
static CYTHON_INLINE long __Pyx_div_long(long, long); /* proto */
static CYTHON_INLINE long __Pyx_mod_long(long, long); /* proto */
@@ -1746,6 +1781,18 @@ static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb);
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level); /*proto*/
+#include <string.h>
+
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+#if PY_MAJOR_VERSION >= 3
+#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
+#else
+#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
+#endif
+
static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject *);
static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject *);
@@ -1868,9 +1915,11 @@ static PyTypeObject *__pyx_ptype_3_sa_TrieTable = 0;
static PyTypeObject *__pyx_ptype_3_sa_PhraseLocation = 0;
static PyTypeObject *__pyx_ptype_3_sa_Sampler = 0;
static PyTypeObject *__pyx_ptype_3_sa_HieroCachingRuleFactory = 0;
-static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct__compute_stats = 0;
-static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_1___iter__ = 0;
-static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_2_input = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct__read_bitext = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_1_genexpr = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_2_compute_stats = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_3___iter__ = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_4_input = 0;
static int __pyx_v_3_sa_MIN_BOTTOM_SIZE;
static int __pyx_v_3_sa_MIN_BOTTOM_BITS;
static int __pyx_v_3_sa_LOWER_MASK[32];
@@ -1957,7 +2006,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_28write(struct __pyx_obj_3_sa_IntList *_
static PyObject *__pyx_pf_3_sa_7IntList_30read(struct __pyx_obj_3_sa_IntList *__pyx_v_self, char *__pyx_v_filename); /* proto */
static int __pyx_pf_3_sa_9StringMap___cinit__(struct __pyx_obj_3_sa_StringMap *__pyx_v_self); /* proto */
static void __pyx_pf_3_sa_9StringMap_2__dealloc__(struct __pyx_obj_3_sa_StringMap *__pyx_v_self); /* proto */
-static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text, int __pyx_v_use_sent_id); /* proto */
+static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text, PyObject *__pyx_v_side, int __pyx_v_use_sent_id); /* proto */
static Py_ssize_t __pyx_pf_3_sa_9DataArray_2__len__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_4getSentId(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_6getSent(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
@@ -1966,10 +2015,13 @@ static PyObject *__pyx_pf_3_sa_9DataArray_10get_id(struct __pyx_obj_3_sa_DataArr
static PyObject *__pyx_pf_3_sa_9DataArray_12get_word(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_id); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_14write_text(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_9DataArray_16read_text(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_18read_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_20write_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_22write_enhanced_handle(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_f); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_24write_enhanced(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_11read_bitext_genexpr(PyObject *__pyx_self); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_18read_bitext(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename, int __pyx_v_side); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_20read_text_data(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_data); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_22read_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_24write_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_26write_enhanced_handle(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_f); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_28write_enhanced(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_9Alignment_unlink(CYTHON_UNUSED struct __pyx_obj_3_sa_Alignment *__pyx_v_self, PyObject *__pyx_v_link); /* proto */
static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_Alignment *__pyx_v_self, int __pyx_v_sent_id); /* proto */
static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text); /* proto */
@@ -2061,12 +2113,12 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_sa_Precomputation *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3_sa_Precomputation *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_sa_Precomputation *__pyx_v_self, PyObject *__pyx_v_stats, struct __pyx_obj_3_sa_SuffixArray *__pyx_v_sarray); /* proto */
-static int __pyx_pf_3_sa_11SuffixArray___cinit__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text); /* proto */
+static int __pyx_pf_3_sa_11SuffixArray___cinit__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text, PyObject *__pyx_v_side); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_2__getitem__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_4getSentId(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_6getSent(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_8getSentPos(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_loc); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_side); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, int __pyx_v_i, int __pyx_v_j, int __pyx_v_h, struct __pyx_obj_3_sa_IntList *__pyx_v_isa, PyObject *__pyx_v_pad); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_14write_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
static PyObject *__pyx_pf_3_sa_11SuffixArray_16read_binary(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
@@ -2121,49 +2173,47 @@ static char __pyx_k_8[] = "Requested index %d:%d of %d-length IntList";
static char __pyx_k_9[] = "Illegal key type %s for IntList";
static char __pyx_k_13[] = "%s ";
static char __pyx_k_14[] = "\n";
-static char __pyx_k_18[] = "%d ";
-static char __pyx_k_22[] = "%s %d ";
-static char __pyx_k_24[] = "write_enhanced_handle";
-static char __pyx_k_28[] = "-";
-static char __pyx_k_32[] = "%d-%d ";
-static char __pyx_k_39[] = "%d-%d out of bounds (I=%d,J=%d) in line %d\n";
-static char __pyx_k_42[] = "";
-static char __pyx_k_43[] = "Sort error in CLex";
-static char __pyx_k_45[] = " ";
-static char __pyx_k_47[] = "%d %f %f ";
-static char __pyx_k_49[] = "%d %s ";
-static char __pyx_k_53[] = "%s %s %.6f %.6f\n";
-static char __pyx_k_55[] = " (";
-static char __pyx_k_56[] = ")";
-static char __pyx_k_57[] = "Constructing LCP array";
-static char __pyx_k_59[] = "LCP array completed";
-static char __pyx_k_61[] = "[%s,%d]";
-static char __pyx_k_62[] = "[%s]";
-static char __pyx_k_63[] = "\\";
-static char __pyx_k_64[] = " ";
-static char __pyx_k_65[] = "Invalid LHS symbol: %d";
-static char __pyx_k_66[] = "%d-%d";
-static char __pyx_k_67[] = " ||| ";
-static char __pyx_k_68[] = "precompute_secondary_rank";
-static char __pyx_k_69[] = "train_max_initial_size";
-static char __pyx_k_70[] = "Precomputing frequent intersections";
-static char __pyx_k_72[] = " Computing inverted indexes...";
-static char __pyx_k_74[] = " Computing collocations...";
-static char __pyx_k_76[] = " %d sentences";
-static char __pyx_k_81[] = "X ";
-static char __pyx_k_82[] = "ERROR: unexpected pattern %s in set of precomputed collocations";
-static char __pyx_k_83[] = "RANK %d\tCOUNT, COST: %d %d\tCUMUL: %d, %d";
-static char __pyx_k_84[] = "Precomputed collocations for %d patterns out of %d possible (upper bound %d)";
-static char __pyx_k_85[] = "Precomputed inverted index for %d patterns ";
-static char __pyx_k_86[] = "Precomputation took %f seconds";
-static char __pyx_k_87[] = " Bucket sort took %f seconds";
-static char __pyx_k_88[] = " Refining, sort depth = %d";
-static char __pyx_k_89[] = " Refinement took %f seconds";
-static char __pyx_k_90[] = " Finalizing sort...";
-static char __pyx_k_92[] = "Suffix array construction took %f seconds";
-static char __pyx_k_93[] = "Unexpected condition found in q3sort: sort from %d to %d";
-static char __pyx_k_98[] = "Sampling strategy: uniform, max sample size = %d";
-static char __pyx_k_99[] = "Sampling strategy: no sampling";
+static char __pyx_k_18[] = " ||| ";
+static char __pyx_k_21[] = "%d ";
+static char __pyx_k_25[] = "%s %d ";
+static char __pyx_k_27[] = "write_enhanced_handle";
+static char __pyx_k_31[] = "-";
+static char __pyx_k_35[] = "%d-%d ";
+static char __pyx_k_42[] = "%d-%d out of bounds (I=%d,J=%d) in line %d\n";
+static char __pyx_k_45[] = "";
+static char __pyx_k_46[] = "Sort error in CLex";
+static char __pyx_k_48[] = " ";
+static char __pyx_k_50[] = "%d %f %f ";
+static char __pyx_k_52[] = "%d %s ";
+static char __pyx_k_56[] = "%s %s %.6f %.6f\n";
+static char __pyx_k_58[] = " (";
+static char __pyx_k_59[] = ")";
+static char __pyx_k_60[] = "Constructing LCP array";
+static char __pyx_k_62[] = "LCP array completed";
+static char __pyx_k_64[] = "[%s,%d]";
+static char __pyx_k_65[] = "[%s]";
+static char __pyx_k_66[] = "\\";
+static char __pyx_k_67[] = " ";
+static char __pyx_k_68[] = "Invalid LHS symbol: %d";
+static char __pyx_k_69[] = "%d-%d";
+static char __pyx_k_70[] = "precompute_secondary_rank";
+static char __pyx_k_71[] = "train_max_initial_size";
+static char __pyx_k_72[] = "Precomputing frequent intersections";
+static char __pyx_k_74[] = " Computing inverted indexes...";
+static char __pyx_k_76[] = " Computing collocations...";
+static char __pyx_k_78[] = " %d sentences";
+static char __pyx_k_83[] = "X ";
+static char __pyx_k_84[] = "ERROR: unexpected pattern %s in set of precomputed collocations";
+static char __pyx_k_85[] = "RANK %d\tCOUNT, COST: %d %d\tCUMUL: %d, %d";
+static char __pyx_k_86[] = "Precomputed collocations for %d patterns out of %d possible (upper bound %d)";
+static char __pyx_k_87[] = "Precomputed inverted index for %d patterns ";
+static char __pyx_k_88[] = "Precomputation took %f seconds";
+static char __pyx_k_89[] = " Bucket sort took %f seconds";
+static char __pyx_k_90[] = " Refining, sort depth = %d";
+static char __pyx_k_91[] = " Refinement took %f seconds";
+static char __pyx_k_92[] = " Finalizing sort...";
+static char __pyx_k_94[] = "Suffix array construction took %f seconds";
+static char __pyx_k_95[] = "Unexpected condition found in q3sort: sort from %d to %d";
static char __pyx_k__0[] = "0";
static char __pyx_k__1[] = "1";
static char __pyx_k__e[] = "e";
@@ -2173,39 +2223,41 @@ static char __pyx_k__i[] = "i";
static char __pyx_k__j[] = "j";
static char __pyx_k__r[] = "r";
static char __pyx_k__w[] = "w";
-static char __pyx_k_101[] = "require_aligned_terminal";
-static char __pyx_k_102[] = "require_aligned_chunks";
-static char __pyx_k_103[] = "[X]";
-static char __pyx_k_104[] = "Must specify an alignment object";
-static char __pyx_k_106[] = "Reading precomputed data from file %s... ";
-static char __pyx_k_107[] = "Precomputation done with max nonterminals %d, decoder uses %d";
-static char __pyx_k_108[] = "Precomputation done with max terminals %d, decoder uses %d";
-static char __pyx_k_109[] = "Precomputation done with max initial size %d, decoder uses %d";
-static char __pyx_k_110[] = "Precomputation done with min gap size %d, decoder uses %d";
-static char __pyx_k_111[] = "Converting %d hash keys on precomputed inverted index... ";
-static char __pyx_k_112[] = "Converting %d hash keys on precomputed collocations... ";
-static char __pyx_k_113[] = "Processing precomputations took %f seconds";
-static char __pyx_k_114[] = "{";
- static char __pyx_k_115[] = "(";
-static char __pyx_k_116[] = "}";
-static char __pyx_k_117[] = "get_precomputed_collocation";
-static char __pyx_k_118[] = "double binary";
-static char __pyx_k_119[] = "Keyword trie error";
-static char __pyx_k_121[] = "get_all_nodes_isteps_away";
-static char __pyx_k_122[] = "Total time for rule lookup, extraction, and scoring = %f seconds";
-static char __pyx_k_123[] = " Extract time = %f seconds";
-static char __pyx_k_124[] = "No aligned terminals";
-static char __pyx_k_125[] = "Unaligned chunk";
-static char __pyx_k_126[] = "Gaps are not tight phrases";
-static char __pyx_k_127[] = "Inside edges of preceding subphrase are not tight";
-static char __pyx_k_128[] = "Inside edges of following subphrase are not tight";
-static char __pyx_k_129[] = "Subphrase [%d, %d] failed integrity check";
-static char __pyx_k_130[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
-static char __pyx_k_131[] = "Unable to extract basic phrase";
-static char __pyx_k_134[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/_sa.pyx";
-static char __pyx_k_135[] = "cdec.sa";
-static char __pyx_k_139[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi";
-static char __pyx_k_140[] = "*EPS*";
+static char __pyx_k_100[] = "Sampling strategy: uniform, max sample size = %d";
+static char __pyx_k_101[] = "Sampling strategy: no sampling";
+static char __pyx_k_103[] = "require_aligned_terminal";
+static char __pyx_k_104[] = "require_aligned_chunks";
+static char __pyx_k_105[] = "[X]";
+static char __pyx_k_106[] = "Must specify an alignment object";
+static char __pyx_k_108[] = "Reading precomputed data from file %s... ";
+static char __pyx_k_109[] = "Precomputation done with max nonterminals %d, decoder uses %d";
+static char __pyx_k_110[] = "Precomputation done with max terminals %d, decoder uses %d";
+static char __pyx_k_111[] = "Precomputation done with max initial size %d, decoder uses %d";
+static char __pyx_k_112[] = "Precomputation done with min gap size %d, decoder uses %d";
+static char __pyx_k_113[] = "Converting %d hash keys on precomputed inverted index... ";
+static char __pyx_k_114[] = "Converting %d hash keys on precomputed collocations... ";
+static char __pyx_k_115[] = "Processing precomputations took %f seconds";
+static char __pyx_k_116[] = "{";
+ static char __pyx_k_117[] = "(";
+static char __pyx_k_118[] = "}";
+static char __pyx_k_119[] = "get_precomputed_collocation";
+static char __pyx_k_120[] = "double binary";
+static char __pyx_k_121[] = "Keyword trie error";
+static char __pyx_k_123[] = "get_all_nodes_isteps_away";
+static char __pyx_k_124[] = "Total time for rule lookup, extraction, and scoring = %f seconds";
+static char __pyx_k_125[] = " Extract time = %f seconds";
+static char __pyx_k_126[] = "No aligned terminals";
+static char __pyx_k_127[] = "Unaligned chunk";
+static char __pyx_k_128[] = "Gaps are not tight phrases";
+static char __pyx_k_129[] = "Inside edges of preceding subphrase are not tight";
+static char __pyx_k_130[] = "Inside edges of following subphrase are not tight";
+static char __pyx_k_131[] = "Subphrase [%d, %d] failed integrity check";
+static char __pyx_k_132[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
+static char __pyx_k_133[] = "Unable to extract basic phrase";
+static char __pyx_k_136[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/_sa.pyx";
+static char __pyx_k_137[] = "cdec.sa";
+static char __pyx_k_141[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi";
+static char __pyx_k_142[] = "*EPS*";
static char __pyx_k__gc[] = "gc";
static char __pyx_k__sa[] = "sa";
static char __pyx_k___sa[] = "_sa";
@@ -2229,6 +2281,7 @@ static char __pyx_k__info[] = "info";
static char __pyx_k__join[] = "join";
static char __pyx_k__open[] = "open";
static char __pyx_k__seek[] = "seek";
+static char __pyx_k__side[] = "side";
static char __pyx_k__size[] = "size";
static char __pyx_k__skip[] = "skip";
static char __pyx_k__stop[] = "stop";
@@ -2266,6 +2319,7 @@ static char __pyx_k__sample[] = "sample";
static char __pyx_k__sarray[] = "sarray";
static char __pyx_k__scores[] = "scores";
static char __pyx_k__sorted[] = "sorted";
+static char __pyx_k__source[] = "source";
static char __pyx_k__string[] = "string";
static char __pyx_k__unlink[] = "unlink";
static char __pyx_k__advance[] = "advance";
@@ -2334,6 +2388,7 @@ static char __pyx_k__initial_len[] = "initial_len";
static char __pyx_k__next_states[] = "next_states";
static char __pyx_k__precomputed[] = "precomputed";
static char __pyx_k__read_binary[] = "read_binary";
+static char __pyx_k__read_bitext[] = "read_bitext";
static char __pyx_k__sample_size[] = "sample_size";
static char __pyx_k__suffix_link[] = "suffix_link";
static char __pyx_k__use_sent_id[] = "use_sent_id";
@@ -2344,6 +2399,7 @@ static char __pyx_k__StopIteration[] = "StopIteration";
static char __pyx_k__alphabet_size[] = "alphabet_size";
static char __pyx_k__tight_phrases[] = "tight_phrases";
static char __pyx_k__pattern2phrase[] = "pattern2phrase";
+static char __pyx_k__read_text_data[] = "read_text_data";
static char __pyx_k__sym_fromstring[] = "sym_fromstring";
static char __pyx_k__by_slack_factor[] = "by_slack_factor";
static char __pyx_k__get_next_states[] = "get_next_states";
@@ -2362,11 +2418,11 @@ static char __pyx_k__max_target_length[] = "max_target_length";
static char __pyx_k__train_min_gap_size[] = "train_min_gap_size";
static char __pyx_k__pattern2phrase_plus[] = "pattern2phrase_plus";
static PyObject *__pyx_kp_s_1;
-static PyObject *__pyx_n_s_101;
-static PyObject *__pyx_n_s_102;
-static PyObject *__pyx_kp_s_104;
+static PyObject *__pyx_kp_s_100;
+static PyObject *__pyx_kp_s_101;
+static PyObject *__pyx_n_s_103;
+static PyObject *__pyx_n_s_104;
static PyObject *__pyx_kp_s_106;
-static PyObject *__pyx_kp_s_107;
static PyObject *__pyx_kp_s_108;
static PyObject *__pyx_kp_s_109;
static PyObject *__pyx_kp_s_110;
@@ -2376,12 +2432,12 @@ static PyObject *__pyx_kp_s_113;
static PyObject *__pyx_kp_s_114;
static PyObject *__pyx_kp_s_115;
static PyObject *__pyx_kp_s_116;
-static PyObject *__pyx_n_s_117;
+static PyObject *__pyx_kp_s_117;
static PyObject *__pyx_kp_s_118;
-static PyObject *__pyx_kp_s_119;
-static PyObject *__pyx_n_s_121;
-static PyObject *__pyx_kp_s_122;
-static PyObject *__pyx_kp_s_123;
+static PyObject *__pyx_n_s_119;
+static PyObject *__pyx_kp_s_120;
+static PyObject *__pyx_kp_s_121;
+static PyObject *__pyx_n_s_123;
static PyObject *__pyx_kp_s_124;
static PyObject *__pyx_kp_s_125;
static PyObject *__pyx_kp_s_126;
@@ -2391,49 +2447,49 @@ static PyObject *__pyx_kp_s_129;
static PyObject *__pyx_kp_s_13;
static PyObject *__pyx_kp_s_130;
static PyObject *__pyx_kp_s_131;
-static PyObject *__pyx_kp_s_134;
-static PyObject *__pyx_kp_s_135;
-static PyObject *__pyx_kp_s_139;
+static PyObject *__pyx_kp_s_132;
+static PyObject *__pyx_kp_s_133;
+static PyObject *__pyx_kp_s_136;
+static PyObject *__pyx_kp_s_137;
static PyObject *__pyx_kp_s_14;
-static PyObject *__pyx_kp_s_140;
+static PyObject *__pyx_kp_s_141;
+static PyObject *__pyx_kp_s_142;
static PyObject *__pyx_kp_s_18;
static PyObject *__pyx_kp_s_2;
-static PyObject *__pyx_kp_s_22;
-static PyObject *__pyx_n_s_24;
-static PyObject *__pyx_kp_s_28;
+static PyObject *__pyx_kp_s_21;
+static PyObject *__pyx_kp_s_25;
+static PyObject *__pyx_n_s_27;
static PyObject *__pyx_kp_s_3;
-static PyObject *__pyx_kp_s_32;
-static PyObject *__pyx_kp_s_39;
+static PyObject *__pyx_kp_s_31;
+static PyObject *__pyx_kp_s_35;
static PyObject *__pyx_kp_s_4;
static PyObject *__pyx_kp_s_42;
-static PyObject *__pyx_kp_s_43;
static PyObject *__pyx_kp_s_45;
-static PyObject *__pyx_kp_s_47;
-static PyObject *__pyx_kp_s_49;
+static PyObject *__pyx_kp_s_46;
+static PyObject *__pyx_kp_s_48;
static PyObject *__pyx_kp_s_5;
-static PyObject *__pyx_kp_s_53;
-static PyObject *__pyx_kp_s_55;
+static PyObject *__pyx_kp_s_50;
+static PyObject *__pyx_kp_s_52;
static PyObject *__pyx_kp_s_56;
-static PyObject *__pyx_kp_s_57;
+static PyObject *__pyx_kp_s_58;
static PyObject *__pyx_kp_s_59;
static PyObject *__pyx_kp_s_6;
-static PyObject *__pyx_kp_s_61;
+static PyObject *__pyx_kp_s_60;
static PyObject *__pyx_kp_s_62;
-static PyObject *__pyx_kp_s_63;
static PyObject *__pyx_kp_s_64;
static PyObject *__pyx_kp_s_65;
static PyObject *__pyx_kp_s_66;
static PyObject *__pyx_kp_s_67;
-static PyObject *__pyx_n_s_68;
-static PyObject *__pyx_n_s_69;
+static PyObject *__pyx_kp_s_68;
+static PyObject *__pyx_kp_s_69;
static PyObject *__pyx_kp_s_7;
-static PyObject *__pyx_kp_s_70;
+static PyObject *__pyx_n_s_70;
+static PyObject *__pyx_n_s_71;
static PyObject *__pyx_kp_s_72;
static PyObject *__pyx_kp_s_74;
static PyObject *__pyx_kp_s_76;
+static PyObject *__pyx_kp_s_78;
static PyObject *__pyx_kp_s_8;
-static PyObject *__pyx_kp_s_81;
-static PyObject *__pyx_kp_s_82;
static PyObject *__pyx_kp_s_83;
static PyObject *__pyx_kp_s_84;
static PyObject *__pyx_kp_s_85;
@@ -2443,10 +2499,10 @@ static PyObject *__pyx_kp_s_88;
static PyObject *__pyx_kp_s_89;
static PyObject *__pyx_kp_s_9;
static PyObject *__pyx_kp_s_90;
+static PyObject *__pyx_kp_s_91;
static PyObject *__pyx_kp_s_92;
-static PyObject *__pyx_kp_s_93;
-static PyObject *__pyx_kp_s_98;
-static PyObject *__pyx_kp_s_99;
+static PyObject *__pyx_kp_s_94;
+static PyObject *__pyx_kp_s_95;
static PyObject *__pyx_kp_s__0;
static PyObject *__pyx_kp_s__1;
static PyObject *__pyx_n_s__END_OF_FILE;
@@ -2564,7 +2620,9 @@ static PyObject *__pyx_n_s__range;
static PyObject *__pyx_n_s__reachable;
static PyObject *__pyx_n_s__reachable_buffer;
static PyObject *__pyx_n_s__read_binary;
+static PyObject *__pyx_n_s__read_bitext;
static PyObject *__pyx_n_s__read_text;
+static PyObject *__pyx_n_s__read_text_data;
static PyObject *__pyx_n_s__res;
static PyObject *__pyx_n_s__reset;
static PyObject *__pyx_n_s__resource;
@@ -2581,9 +2639,11 @@ static PyObject *__pyx_n_s__scores;
static PyObject *__pyx_n_s__seek;
static PyObject *__pyx_n_s__setdefault;
static PyObject *__pyx_n_s__shortest;
+static PyObject *__pyx_n_s__side;
static PyObject *__pyx_n_s__size;
static PyObject *__pyx_n_s__skip;
static PyObject *__pyx_n_s__sorted;
+static PyObject *__pyx_n_s__source;
static PyObject *__pyx_n_s__spanlen;
static PyObject *__pyx_n_s__split;
static PyObject *__pyx_n_s__start;
@@ -2618,8 +2678,8 @@ static PyObject *__pyx_int_10;
static PyObject *__pyx_int_20;
static PyObject *__pyx_int_1000;
static PyObject *__pyx_int_65536;
-static PyObject *__pyx_k_38;
-static PyObject *__pyx_k_97;
+static PyObject *__pyx_k_41;
+static PyObject *__pyx_k_99;
static PyObject *__pyx_k_tuple_10;
static PyObject *__pyx_k_tuple_11;
static PyObject *__pyx_k_tuple_12;
@@ -2628,49 +2688,51 @@ static PyObject *__pyx_k_tuple_16;
static PyObject *__pyx_k_tuple_17;
static PyObject *__pyx_k_tuple_19;
static PyObject *__pyx_k_tuple_20;
-static PyObject *__pyx_k_tuple_21;
+static PyObject *__pyx_k_tuple_22;
static PyObject *__pyx_k_tuple_23;
-static PyObject *__pyx_k_tuple_25;
+static PyObject *__pyx_k_tuple_24;
static PyObject *__pyx_k_tuple_26;
-static PyObject *__pyx_k_tuple_27;
+static PyObject *__pyx_k_tuple_28;
static PyObject *__pyx_k_tuple_29;
static PyObject *__pyx_k_tuple_30;
-static PyObject *__pyx_k_tuple_31;
+static PyObject *__pyx_k_tuple_32;
static PyObject *__pyx_k_tuple_33;
static PyObject *__pyx_k_tuple_34;
-static PyObject *__pyx_k_tuple_35;
static PyObject *__pyx_k_tuple_36;
static PyObject *__pyx_k_tuple_37;
+static PyObject *__pyx_k_tuple_38;
+static PyObject *__pyx_k_tuple_39;
static PyObject *__pyx_k_tuple_40;
-static PyObject *__pyx_k_tuple_41;
+static PyObject *__pyx_k_tuple_43;
static PyObject *__pyx_k_tuple_44;
-static PyObject *__pyx_k_tuple_46;
-static PyObject *__pyx_k_tuple_48;
-static PyObject *__pyx_k_tuple_50;
+static PyObject *__pyx_k_tuple_47;
+static PyObject *__pyx_k_tuple_49;
static PyObject *__pyx_k_tuple_51;
-static PyObject *__pyx_k_tuple_52;
+static PyObject *__pyx_k_tuple_53;
static PyObject *__pyx_k_tuple_54;
-static PyObject *__pyx_k_tuple_58;
-static PyObject *__pyx_k_tuple_60;
-static PyObject *__pyx_k_tuple_71;
+static PyObject *__pyx_k_tuple_55;
+static PyObject *__pyx_k_tuple_57;
+static PyObject *__pyx_k_tuple_61;
+static PyObject *__pyx_k_tuple_63;
static PyObject *__pyx_k_tuple_73;
static PyObject *__pyx_k_tuple_75;
static PyObject *__pyx_k_tuple_77;
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static PyObject *__pyx_k_tuple_79;
static PyObject *__pyx_k_tuple_80;
-static PyObject *__pyx_k_tuple_91;
-static PyObject *__pyx_k_tuple_94;
-static PyObject *__pyx_k_tuple_95;
+static PyObject *__pyx_k_tuple_81;
+static PyObject *__pyx_k_tuple_82;
+static PyObject *__pyx_k_tuple_93;
static PyObject *__pyx_k_tuple_96;
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-static PyObject *__pyx_k_tuple_105;
-static PyObject *__pyx_k_tuple_120;
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-static PyObject *__pyx_k_tuple_136;
-static PyObject *__pyx_k_tuple_137;
-static PyObject *__pyx_k_codeobj_133;
-static PyObject *__pyx_k_codeobj_138;
+static PyObject *__pyx_k_tuple_97;
+static PyObject *__pyx_k_tuple_98;
+static PyObject *__pyx_k_tuple_102;
+static PyObject *__pyx_k_tuple_107;
+static PyObject *__pyx_k_tuple_122;
+static PyObject *__pyx_k_tuple_134;
+static PyObject *__pyx_k_tuple_138;
+static PyObject *__pyx_k_tuple_139;
+static PyObject *__pyx_k_codeobj_135;
+static PyObject *__pyx_k_codeobj_140;
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static int __pyx_pw_3_sa_9DataArray_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
PyObject *__pyx_v_from_binary = 0;
PyObject *__pyx_v_from_text = 0;
+ PyObject *__pyx_v_side = 0;
int __pyx_v_use_sent_id;
int __pyx_r;
__Pyx_RefNannyDeclarations
__Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
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- PyObject* values[3] = {0,0,0};
+ static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_binary,&__pyx_n_s__from_text,&__pyx_n_s__side,&__pyx_n_s__use_sent_id,0};
+ PyObject* values[4] = {0,0,0,0};
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* cdef bint use_sent_id
*
- * def __cinit__(self, from_binary=None, from_text=None, bint use_sent_id=False): # <<<<<<<<<<<<<<
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* self.id2word = ["END_OF_FILE", "END_OF_LINE"]
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values[0] = ((PyObject *)Py_None);
values[1] = ((PyObject *)Py_None);
+ values[2] = ((PyObject *)Py_None);
if (unlikely(__pyx_kwds)) {
Py_ssize_t kw_args;
const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
switch (pos_args) {
+ case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
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}
case 2:
if (kw_args > 0) {
- PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s__use_sent_id);
+ PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s__side);
if (value) { values[2] = value; kw_args--; }
}
+ case 3:
+ if (kw_args > 0) {
+ PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s__use_sent_id);
+ if (value) { values[3] = value; kw_args--; }
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switch (PyTuple_GET_SIZE(__pyx_args)) {
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case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
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+ __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 0, 4, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[3]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+ __pyx_r = __pyx_pf_3_sa_9DataArray___cinit__(((struct __pyx_obj_3_sa_DataArray *)__pyx_v_self), __pyx_v_from_binary, __pyx_v_from_text, __pyx_v_side, __pyx_v_use_sent_id);
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PyObject *__pyx_t_1 = NULL;
int __pyx_t_2;
PyObject *__pyx_t_3 = NULL;
PyObject *__pyx_t_4 = NULL;
+ long __pyx_t_5;
int __pyx_lineno = 0;
const char *__pyx_filename = NULL;
int __pyx_clineno = 0;
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*
- * def __cinit__(self, from_binary=None, from_text=None, bint use_sent_id=False):
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* elif from_text: # <<<<<<<<<<<<<<
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*/
((struct __pyx_vtabstruct_3_sa_DataArray *)__pyx_v_self->__pyx_vtab)->read_handle(__pyx_v_self, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":85
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":97
* f = fopen(filename, "r")
* self.read_handle(f)
* fclose(f) # <<<<<<<<<<<<<<
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return __pyx_r;
}
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":87
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":99
* fclose(f)
*
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int __pyx_clineno = 0;
__Pyx_RefNannySetupContext("read_handle", 0);
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* cdef char* c_word
* cdef bytes py_word
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*/
((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->data->__pyx_vtab)->read_handle(__pyx_v_self->data, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":93
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":105
* cdef bytes py_word
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*/
((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_index->__pyx_vtab)->read_handle(__pyx_v_self->sent_index, __pyx_v_f);
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* self.data.read_handle(f)
* self.sent_index.read_handle(f)
* self.sent_id.read_handle(f) # <<<<<<<<<<<<<<
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*/
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* self.sent_index.read_handle(f)
* self.sent_id.read_handle(f)
* fread(&(num_words), sizeof(int), 1, f) # <<<<<<<<<<<<<<
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*/
fread((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":96
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* self.sent_id.read_handle(f)
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* fread(&(num_words), sizeof(int), 1, f)
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fread((&__pyx_v_word_len), (sizeof(int)), 1, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":98
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* for i in range(num_words):
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free(__pyx_v_c_word);
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__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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* self.word2id[py_word] = len(self.id2word)
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+ __pyx_t_4 = PyObject_Length(__pyx_t_3); if (unlikely(__pyx_t_4 == -1)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 116; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":105
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* self.id2word.append(py_word)
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}
/*else*/ {
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+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":119
* self.use_sent_id = False
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* self.use_sent_id = True
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__Pyx_RefNannySetupContext("write_handle", 0);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":113
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* cdef int num_words
* cdef char* c_word
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((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->data->__pyx_vtab)->write_handle(__pyx_v_self->data, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":114
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":126
* cdef char* c_word
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* self.sent_index.write_handle(f) # <<<<<<<<<<<<<<
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((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_index->__pyx_vtab)->write_handle(__pyx_v_self->sent_index, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":115
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":127
* self.data.write_handle(f)
* self.sent_index.write_handle(f)
* self.sent_id.write_handle(f) # <<<<<<<<<<<<<<
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((struct __pyx_vtabstruct_3_sa_IntList *)__pyx_v_self->sent_id->__pyx_vtab)->write_handle(__pyx_v_self->sent_id, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":116
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__pyx_v_num_words = (__pyx_t_2 - 2);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":117
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fwrite((&__pyx_v_num_words), (sizeof(int)), 1, __pyx_v_f);
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":118
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break;
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__pyx_v_word = __pyx_t_1;
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- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":119
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}
/*finally:*/ {
if (__pyx_t_3) {
- __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_34, NULL);
+ __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_37, NULL);
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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+ __pyx_t_2 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_link); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__Pyx_GOTREF(__pyx_t_4);
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+ __pyx_t_2 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_k_tuple_38), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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+ __pyx_t_10 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_i); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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}
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if (__pyx_t_3) {
- __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_37, NULL);
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values[0] = ((PyObject *)Py_None);
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+ __pyx_t_12 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_42), ((PyObject *)__pyx_t_13)); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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+ __pyx_t_2 = PyNumber_Add(__pyx_v_pad, ((PyObject *)__pyx_kp_s_48)); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 359; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
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*
*
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+ __pyx_t_4 = PyNumber_Add(__pyx_v_pad, ((PyObject *)__pyx_kp_s_48)); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 360; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_4);
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__Pyx_GOTREF(__pyx_t_1);
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+ __pyx_t_2 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_i); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(((PyObject *)__pyx_t_2));
__pyx_t_10 = PyTuple_New(1); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 366; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__pyx_t_4 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 367; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(__pyx_t_4);
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+ __pyx_t_2 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_k_tuple_49), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 367; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
@@ -15450,7 +16051,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
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__Pyx_GIVEREF(__pyx_v_s2);
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+ __pyx_t_1 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_50), ((PyObject *)__pyx_t_11)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 369; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__Pyx_DECREF(((PyObject *)__pyx_t_11)); __pyx_t_11 = 0;
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__pyx_t_2 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 370; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(__pyx_t_2);
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@@ -15552,7 +16153,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_12write_enhanced(struct __pyx_obj_3_sa_BiL
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PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_v_w);
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+ __pyx_t_10 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_52), ((PyObject *)__pyx_t_4)); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 372; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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PyObject *__pyx_v_from_binary = 0;
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Py_ssize_t kw_args;
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PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s__from_text);
if (value) { values[1] = value; kw_args--; }
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__Pyx_GIVEREF(__pyx_t_10);
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PyTuple_SET_ITEM(__pyx_t_11, 1, __pyx_t_10);
__Pyx_GIVEREF(__pyx_t_10);
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{
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PyObject* values[5] = {0,0,0,0,0};
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Py_ssize_t kw_args;
const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
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__Pyx_GOTREF(__pyx_t_6);
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__Pyx_GOTREF(__pyx_t_8);
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__Pyx_GOTREF(__pyx_t_6);
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@@ -32811,7 +33458,7 @@ static PyObject *__pyx_pf_3_sa_11SuffixArray_20write_enhanced(struct __pyx_obj_3
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+ __pyx_t_4 = PyObject_GetAttr(((PyObject *)__pyx_v_self->darray), __pyx_n_s_27); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 199; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(__pyx_t_4);
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__pyx_t_1 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 201; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(__pyx_t_1);
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+ __pyx_t_4 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_a_i); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 201; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(((PyObject *)__pyx_t_4));
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__Pyx_GOTREF(__pyx_t_2);
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__Pyx_GOTREF(__pyx_t_2);
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+ __pyx_t_10 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_w_i); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 204; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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__pyx_t_4 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[13]; __pyx_lineno = 205; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
__Pyx_GOTREF(__pyx_t_4);
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}
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if (__pyx_t_3) {
- __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_96, NULL);
+ __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_98, NULL);
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{
static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__extended,0};
PyObject* values[1] = {0};
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if (unlikely(__pyx_kwds)) {
Py_ssize_t kw_args;
const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
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__Pyx_GOTREF(__pyx_t_4);
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- PyTuple_SET_ITEM(__pyx_t_4, 0, ((PyObject *)__pyx_kp_s_98));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_98));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_100));
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+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_100));
PyTuple_SET_ITEM(__pyx_t_4, 1, __pyx_t_2);
__Pyx_GIVEREF(__pyx_t_2);
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}
case 11:
if (kw_args > 0) {
- PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_68);
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case 12:
@@ -35962,17 +36609,17 @@ static int __pyx_pw_3_sa_23HieroCachingRuleFactory_1__cinit__(PyObject *__pyx_v_
}
case 13:
if (kw_args > 0) {
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case 14:
if (kw_args > 0) {
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case 15:
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@@ -50167,9 +50814,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
* met_constraints = 0
*
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_125));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_125);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1489
* if self.require_aligned_chunks and num_aligned_chunks < num_chunks:
@@ -50227,9 +50874,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
* met_constraints = 0
* break
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_126));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_126);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1496
* if f_links_low[matching.arr[matching.start+i]+chunklen[i]-f_sent_start] == -1:
@@ -50269,9 +50916,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
* met_constraints = 0
* break
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_126));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_126);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1500
* if f_links_low[matching.arr[matching.start+i+1]-1-f_sent_start] == -1:
@@ -50483,9 +51130,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
* else:
* gap_start = 1
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
goto __pyx_L38;
}
__pyx_L38:;
@@ -50681,9 +51328,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
* else:
* if self.tight_phrases and f_links_low[f_high-1] == -1:
*/
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+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_130));
__Pyx_DECREF(__pyx_v_reason_for_failure);
- __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_130);
goto __pyx_L45;
}
__pyx_L45:;
@@ -50801,7 +51448,7 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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__pyx_t_10 = 0;
__pyx_t_1 = 0;
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+ __pyx_t_1 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_131), ((PyObject *)__pyx_t_2)); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1565; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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__Pyx_DECREF(((PyObject *)__pyx_t_2)); __pyx_t_2 = 0;
__Pyx_DECREF(__pyx_v_reason_for_failure);
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__pyx_t_1 = 0;
__pyx_t_14 = 0;
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+ __pyx_t_14 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_132), ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1595; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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__Pyx_DECREF(((PyObject *)__pyx_t_15)); __pyx_t_15 = 0;
__Pyx_DECREF(__pyx_v_reason_for_failure);
@@ -53335,9 +53982,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
*
* free(sent_links)
*/
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_131));
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__Pyx_DECREF(__pyx_v_reason_for_failure);
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+ __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_133);
}
__pyx_L34:;
goto __pyx_L33;
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- {__Pyx_NAMESTR("write_enhanced"), (PyCFunction)__pyx_pw_3_sa_9DataArray_25write_enhanced, METH_O, __Pyx_DOCSTR(0)},
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+ {__Pyx_NAMESTR("read_text_data"), (PyCFunction)__pyx_pw_3_sa_9DataArray_21read_text_data, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("read_binary"), (PyCFunction)__pyx_pw_3_sa_9DataArray_23read_binary, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("write_binary"), (PyCFunction)__pyx_pw_3_sa_9DataArray_25write_binary, METH_O, __Pyx_DOCSTR(0)},
+ {__Pyx_NAMESTR("write_enhanced_handle"), (PyCFunction)__pyx_pw_3_sa_9DataArray_27write_enhanced_handle, METH_O, __Pyx_DOCSTR(0)},
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{__Pyx_NAMESTR("getSentPos"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_9getSentPos, METH_O, __Pyx_DOCSTR(0)},
- {__Pyx_NAMESTR("read_text"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_11read_text, METH_O, __Pyx_DOCSTR(__pyx_doc_3_sa_11SuffixArray_10read_text)},
+ {__Pyx_NAMESTR("read_text"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_11read_text, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_3_sa_11SuffixArray_10read_text)},
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{__Pyx_NAMESTR("read_binary"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_17read_binary, METH_O, __Pyx_DOCSTR(0)},
@@ -58455,11 +59104,409 @@ static PyTypeObject __pyx_type_3_sa_HieroCachingRuleFactory = {
#endif
};
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+}
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+}
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+}
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+}
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+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_1_genexpr = {
+ #if PY_MAJOR_VERSION < 3
+ 0, /*bf_getreadbuffer*/
+ #endif
+ #if PY_MAJOR_VERSION < 3
+ 0, /*bf_getwritebuffer*/
+ #endif
+ #if PY_MAJOR_VERSION < 3
+ 0, /*bf_getsegcount*/
+ #endif
+ #if PY_MAJOR_VERSION < 3
+ 0, /*bf_getcharbuffer*/
+ #endif
+ #if PY_VERSION_HEX >= 0x02060000
+ 0, /*bf_getbuffer*/
+ #endif
+ #if PY_VERSION_HEX >= 0x02060000
+ 0, /*bf_releasebuffer*/
+ #endif
+};
+
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1_genexpr = {
+ PyVarObject_HEAD_INIT(0, 0)
+ __Pyx_NAMESTR("_sa.__pyx_scope_struct_1_genexpr"), /*tp_name*/
+ sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr), /*tp_basicsize*/
+ 0, /*tp_itemsize*/
+ __pyx_tp_dealloc_3_sa___pyx_scope_struct_1_genexpr, /*tp_dealloc*/
+ 0, /*tp_print*/
+ 0, /*tp_getattr*/
+ 0, /*tp_setattr*/
+ #if PY_MAJOR_VERSION < 3
+ 0, /*tp_compare*/
+ #else
+ 0, /*reserved*/
+ #endif
+ 0, /*tp_repr*/
+ &__pyx_tp_as_number___pyx_scope_struct_1_genexpr, /*tp_as_number*/
+ &__pyx_tp_as_sequence___pyx_scope_struct_1_genexpr, /*tp_as_sequence*/
+ &__pyx_tp_as_mapping___pyx_scope_struct_1_genexpr, /*tp_as_mapping*/
+ 0, /*tp_hash*/
+ 0, /*tp_call*/
+ 0, /*tp_str*/
+ 0, /*tp_getattro*/
+ 0, /*tp_setattro*/
+ &__pyx_tp_as_buffer___pyx_scope_struct_1_genexpr, /*tp_as_buffer*/
+ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
+ 0, /*tp_doc*/
+ __pyx_tp_traverse_3_sa___pyx_scope_struct_1_genexpr, /*tp_traverse*/
+ __pyx_tp_clear_3_sa___pyx_scope_struct_1_genexpr, /*tp_clear*/
+ 0, /*tp_richcompare*/
+ 0, /*tp_weaklistoffset*/
+ 0, /*tp_iter*/
+ 0, /*tp_iternext*/
+ __pyx_methods_3_sa___pyx_scope_struct_1_genexpr, /*tp_methods*/
+ 0, /*tp_members*/
+ 0, /*tp_getset*/
+ 0, /*tp_base*/
+ 0, /*tp_dict*/
+ 0, /*tp_descr_get*/
+ 0, /*tp_descr_set*/
+ 0, /*tp_dictoffset*/
+ 0, /*tp_init*/
+ 0, /*tp_alloc*/
+ __pyx_tp_new_3_sa___pyx_scope_struct_1_genexpr, /*tp_new*/
+ 0, /*tp_free*/
+ 0, /*tp_is_gc*/
+ 0, /*tp_bases*/
+ 0, /*tp_mro*/
+ 0, /*tp_cache*/
+ 0, /*tp_subclasses*/
+ 0, /*tp_weaklist*/
+ 0, /*tp_del*/
+ #if PY_VERSION_HEX >= 0x02060000
+ 0, /*tp_version_tag*/
+ #endif
+};
+
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_compute_stats(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p;
PyObject *o = (*t->tp_alloc)(t, 0);
if (!o) return 0;
- p = ((struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o);
+ p = ((struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o);
p->__pyx_v_ngram = 0;
p->__pyx_v_ngram_start = 0;
p->__pyx_v_ngram_starts = 0;
@@ -58469,8 +59516,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct__compute_stats(PyTypeObjec
return o;
}
-static void __pyx_tp_dealloc_3_sa___pyx_scope_struct__compute_stats(PyObject *o) {
- struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o;
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_compute_stats(PyObject *o) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o;
Py_XDECREF(((PyObject *)p->__pyx_v_ngram));
Py_XDECREF(((PyObject *)p->__pyx_v_ngram_start));
Py_XDECREF(((PyObject *)p->__pyx_v_ngram_starts));
@@ -58480,9 +59527,9 @@ static void __pyx_tp_dealloc_3_sa___pyx_scope_struct__compute_stats(PyObject *o)
(*Py_TYPE(o)->tp_free)(o);
}
-static int __pyx_tp_traverse_3_sa___pyx_scope_struct__compute_stats(PyObject *o, visitproc v, void *a) {
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct_2_compute_stats(PyObject *o, visitproc v, void *a) {
int e;
- struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o;
+ struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o;
if (p->__pyx_v_ngram) {
e = (*v)(p->__pyx_v_ngram, a); if (e) return e;
}
@@ -58504,8 +59551,8 @@ static int __pyx_tp_traverse_3_sa___pyx_scope_struct__compute_stats(PyObject *o,
return 0;
}
-static int __pyx_tp_clear_3_sa___pyx_scope_struct__compute_stats(PyObject *o) {
- struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o;
+static int __pyx_tp_clear_3_sa___pyx_scope_struct_2_compute_stats(PyObject *o) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o;
PyObject* tmp;
tmp = ((PyObject*)p->__pyx_v_ngram);
p->__pyx_v_ngram = ((PyObject*)Py_None); Py_INCREF(Py_None);
@@ -58528,11 +59575,11 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct__compute_stats(PyObject *o) {
return 0;
}
-static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct__compute_stats[] = {
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_2_compute_stats[] = {
{0, 0, 0, 0}
};
-static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct__compute_stats = {
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_2_compute_stats = {
0, /*nb_add*/
0, /*nb_subtract*/
0, /*nb_multiply*/
@@ -58590,7 +59637,7 @@ static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct__compute_stats = {
#endif
};
-static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct__compute_stats = {
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_2_compute_stats = {
0, /*sq_length*/
0, /*sq_concat*/
0, /*sq_repeat*/
@@ -58603,13 +59650,13 @@ static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct__compute_stats
0, /*sq_inplace_repeat*/
};
-static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct__compute_stats = {
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_2_compute_stats = {
0, /*mp_length*/
0, /*mp_subscript*/
0, /*mp_ass_subscript*/
};
-static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct__compute_stats = {
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_2_compute_stats = {
#if PY_MAJOR_VERSION < 3
0, /*bf_getreadbuffer*/
#endif
@@ -58630,12 +59677,12 @@ static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct__compute_stats = {
#endif
};
-static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_compute_stats = {
PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("_sa.__pyx_scope_struct__compute_stats"), /*tp_name*/
- sizeof(struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats), /*tp_basicsize*/
+ __Pyx_NAMESTR("_sa.__pyx_scope_struct_2_compute_stats"), /*tp_name*/
+ sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats), /*tp_basicsize*/
0, /*tp_itemsize*/
- __pyx_tp_dealloc_3_sa___pyx_scope_struct__compute_stats, /*tp_dealloc*/
+ __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_compute_stats, /*tp_dealloc*/
0, /*tp_print*/
0, /*tp_getattr*/
0, /*tp_setattr*/
@@ -58645,24 +59692,24 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
0, /*reserved*/
#endif
0, /*tp_repr*/
- &__pyx_tp_as_number___pyx_scope_struct__compute_stats, /*tp_as_number*/
- &__pyx_tp_as_sequence___pyx_scope_struct__compute_stats, /*tp_as_sequence*/
- &__pyx_tp_as_mapping___pyx_scope_struct__compute_stats, /*tp_as_mapping*/
+ &__pyx_tp_as_number___pyx_scope_struct_2_compute_stats, /*tp_as_number*/
+ &__pyx_tp_as_sequence___pyx_scope_struct_2_compute_stats, /*tp_as_sequence*/
+ &__pyx_tp_as_mapping___pyx_scope_struct_2_compute_stats, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
0, /*tp_str*/
0, /*tp_getattro*/
0, /*tp_setattro*/
- &__pyx_tp_as_buffer___pyx_scope_struct__compute_stats, /*tp_as_buffer*/
+ &__pyx_tp_as_buffer___pyx_scope_struct_2_compute_stats, /*tp_as_buffer*/
Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
0, /*tp_doc*/
- __pyx_tp_traverse_3_sa___pyx_scope_struct__compute_stats, /*tp_traverse*/
- __pyx_tp_clear_3_sa___pyx_scope_struct__compute_stats, /*tp_clear*/
+ __pyx_tp_traverse_3_sa___pyx_scope_struct_2_compute_stats, /*tp_traverse*/
+ __pyx_tp_clear_3_sa___pyx_scope_struct_2_compute_stats, /*tp_clear*/
0, /*tp_richcompare*/
0, /*tp_weaklistoffset*/
0, /*tp_iter*/
0, /*tp_iternext*/
- __pyx_methods_3_sa___pyx_scope_struct__compute_stats, /*tp_methods*/
+ __pyx_methods_3_sa___pyx_scope_struct_2_compute_stats, /*tp_methods*/
0, /*tp_members*/
0, /*tp_getset*/
0, /*tp_base*/
@@ -58672,7 +59719,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
0, /*tp_dictoffset*/
0, /*tp_init*/
0, /*tp_alloc*/
- __pyx_tp_new_3_sa___pyx_scope_struct__compute_stats, /*tp_new*/
+ __pyx_tp_new_3_sa___pyx_scope_struct_2_compute_stats, /*tp_new*/
0, /*tp_free*/
0, /*tp_is_gc*/
0, /*tp_bases*/
@@ -58686,32 +59733,32 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
#endif
};
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_1___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
- struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p;
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_3___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p;
PyObject *o = (*t->tp_alloc)(t, 0);
if (!o) return 0;
- p = ((struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o);
+ p = ((struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o);
p->__pyx_v_self = 0;
return o;
}
-static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_1___iter__(PyObject *o) {
- struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o;
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_3___iter__(PyObject *o) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o;
Py_XDECREF(((PyObject *)p->__pyx_v_self));
(*Py_TYPE(o)->tp_free)(o);
}
-static int __pyx_tp_traverse_3_sa___pyx_scope_struct_1___iter__(PyObject *o, visitproc v, void *a) {
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct_3___iter__(PyObject *o, visitproc v, void *a) {
int e;
- struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o;
+ struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o;
if (p->__pyx_v_self) {
e = (*v)(((PyObject*)p->__pyx_v_self), a); if (e) return e;
}
return 0;
}
-static int __pyx_tp_clear_3_sa___pyx_scope_struct_1___iter__(PyObject *o) {
- struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o;
+static int __pyx_tp_clear_3_sa___pyx_scope_struct_3___iter__(PyObject *o) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o;
PyObject* tmp;
tmp = ((PyObject*)p->__pyx_v_self);
p->__pyx_v_self = ((struct __pyx_obj_3_sa_Phrase *)Py_None); Py_INCREF(Py_None);
@@ -58719,11 +59766,11 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct_1___iter__(PyObject *o) {
return 0;
}
-static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_1___iter__[] = {
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_3___iter__[] = {
{0, 0, 0, 0}
};
-static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_1___iter__ = {
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_3___iter__ = {
0, /*nb_add*/
0, /*nb_subtract*/
0, /*nb_multiply*/
@@ -58781,7 +59828,7 @@ static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_1___iter__ = {
#endif
};
-static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_1___iter__ = {
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_3___iter__ = {
0, /*sq_length*/
0, /*sq_concat*/
0, /*sq_repeat*/
@@ -58794,13 +59841,13 @@ static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_1___iter__ = {
0, /*sq_inplace_repeat*/
};
-static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_1___iter__ = {
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_3___iter__ = {
0, /*mp_length*/
0, /*mp_subscript*/
0, /*mp_ass_subscript*/
};
-static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_1___iter__ = {
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_3___iter__ = {
#if PY_MAJOR_VERSION < 3
0, /*bf_getreadbuffer*/
#endif
@@ -58821,12 +59868,12 @@ static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_1___iter__ = {
#endif
};
-static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_3___iter__ = {
PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("_sa.__pyx_scope_struct_1___iter__"), /*tp_name*/
- sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__), /*tp_basicsize*/
+ __Pyx_NAMESTR("_sa.__pyx_scope_struct_3___iter__"), /*tp_name*/
+ sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__), /*tp_basicsize*/
0, /*tp_itemsize*/
- __pyx_tp_dealloc_3_sa___pyx_scope_struct_1___iter__, /*tp_dealloc*/
+ __pyx_tp_dealloc_3_sa___pyx_scope_struct_3___iter__, /*tp_dealloc*/
0, /*tp_print*/
0, /*tp_getattr*/
0, /*tp_setattr*/
@@ -58836,24 +59883,24 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
0, /*reserved*/
#endif
0, /*tp_repr*/
- &__pyx_tp_as_number___pyx_scope_struct_1___iter__, /*tp_as_number*/
- &__pyx_tp_as_sequence___pyx_scope_struct_1___iter__, /*tp_as_sequence*/
- &__pyx_tp_as_mapping___pyx_scope_struct_1___iter__, /*tp_as_mapping*/
+ &__pyx_tp_as_number___pyx_scope_struct_3___iter__, /*tp_as_number*/
+ &__pyx_tp_as_sequence___pyx_scope_struct_3___iter__, /*tp_as_sequence*/
+ &__pyx_tp_as_mapping___pyx_scope_struct_3___iter__, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
0, /*tp_str*/
0, /*tp_getattro*/
0, /*tp_setattro*/
- &__pyx_tp_as_buffer___pyx_scope_struct_1___iter__, /*tp_as_buffer*/
+ &__pyx_tp_as_buffer___pyx_scope_struct_3___iter__, /*tp_as_buffer*/
Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
0, /*tp_doc*/
- __pyx_tp_traverse_3_sa___pyx_scope_struct_1___iter__, /*tp_traverse*/
- __pyx_tp_clear_3_sa___pyx_scope_struct_1___iter__, /*tp_clear*/
+ __pyx_tp_traverse_3_sa___pyx_scope_struct_3___iter__, /*tp_traverse*/
+ __pyx_tp_clear_3_sa___pyx_scope_struct_3___iter__, /*tp_clear*/
0, /*tp_richcompare*/
0, /*tp_weaklistoffset*/
0, /*tp_iter*/
0, /*tp_iternext*/
- __pyx_methods_3_sa___pyx_scope_struct_1___iter__, /*tp_methods*/
+ __pyx_methods_3_sa___pyx_scope_struct_3___iter__, /*tp_methods*/
0, /*tp_members*/
0, /*tp_getset*/
0, /*tp_base*/
@@ -58863,7 +59910,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
0, /*tp_dictoffset*/
0, /*tp_init*/
0, /*tp_alloc*/
- __pyx_tp_new_3_sa___pyx_scope_struct_1___iter__, /*tp_new*/
+ __pyx_tp_new_3_sa___pyx_scope_struct_3___iter__, /*tp_new*/
0, /*tp_free*/
0, /*tp_is_gc*/
0, /*tp_bases*/
@@ -58877,11 +59924,11 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
#endif
};
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_input(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
- struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p;
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_4_input(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p;
PyObject *o = (*t->tp_alloc)(t, 0);
if (!o) return 0;
- p = ((struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o);
+ p = ((struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o);
p->__pyx_v_alignment = 0;
p->__pyx_v_als = 0;
p->__pyx_v_alslist = 0;
@@ -58935,8 +59982,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_input(PyTypeObject *t, C
return o;
}
-static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_input(PyObject *o) {
- struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o;
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_4_input(PyObject *o) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o;
Py_XDECREF(p->__pyx_v_alignment);
Py_XDECREF(p->__pyx_v_als);
Py_XDECREF(p->__pyx_v_alslist);
@@ -58990,9 +60037,9 @@ static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_input(PyObject *o) {
(*Py_TYPE(o)->tp_free)(o);
}
-static int __pyx_tp_traverse_3_sa___pyx_scope_struct_2_input(PyObject *o, visitproc v, void *a) {
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct_4_input(PyObject *o, visitproc v, void *a) {
int e;
- struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o;
+ struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o;
if (p->__pyx_v_alignment) {
e = (*v)(p->__pyx_v_alignment, a); if (e) return e;
}
@@ -59146,8 +60193,8 @@ static int __pyx_tp_traverse_3_sa___pyx_scope_struct_2_input(PyObject *o, visitp
return 0;
}
-static int __pyx_tp_clear_3_sa___pyx_scope_struct_2_input(PyObject *o) {
- struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o;
+static int __pyx_tp_clear_3_sa___pyx_scope_struct_4_input(PyObject *o) {
+ struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o;
PyObject* tmp;
tmp = ((PyObject*)p->__pyx_v_alignment);
p->__pyx_v_alignment = Py_None; Py_INCREF(Py_None);
@@ -59302,11 +60349,11 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct_2_input(PyObject *o) {
return 0;
}
-static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_2_input[] = {
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_4_input[] = {
{0, 0, 0, 0}
};
-static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_2_input = {
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_4_input = {
0, /*nb_add*/
0, /*nb_subtract*/
0, /*nb_multiply*/
@@ -59364,7 +60411,7 @@ static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_2_input = {
#endif
};
-static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_2_input = {
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_4_input = {
0, /*sq_length*/
0, /*sq_concat*/
0, /*sq_repeat*/
@@ -59377,13 +60424,13 @@ static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_2_input = {
0, /*sq_inplace_repeat*/
};
-static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_2_input = {
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_4_input = {
0, /*mp_length*/
0, /*mp_subscript*/
0, /*mp_ass_subscript*/
};
-static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_2_input = {
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_4_input = {
#if PY_MAJOR_VERSION < 3
0, /*bf_getreadbuffer*/
#endif
@@ -59404,12 +60451,12 @@ static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_2_input = {
#endif
};
-static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_input = {
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_4_input = {
PyVarObject_HEAD_INIT(0, 0)
- __Pyx_NAMESTR("_sa.__pyx_scope_struct_2_input"), /*tp_name*/
- sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_2_input), /*tp_basicsize*/
+ __Pyx_NAMESTR("_sa.__pyx_scope_struct_4_input"), /*tp_name*/
+ sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_4_input), /*tp_basicsize*/
0, /*tp_itemsize*/
- __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_input, /*tp_dealloc*/
+ __pyx_tp_dealloc_3_sa___pyx_scope_struct_4_input, /*tp_dealloc*/
0, /*tp_print*/
0, /*tp_getattr*/
0, /*tp_setattr*/
@@ -59419,24 +60466,24 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_input = {
0, /*reserved*/
#endif
0, /*tp_repr*/
- &__pyx_tp_as_number___pyx_scope_struct_2_input, /*tp_as_number*/
- &__pyx_tp_as_sequence___pyx_scope_struct_2_input, /*tp_as_sequence*/
- &__pyx_tp_as_mapping___pyx_scope_struct_2_input, /*tp_as_mapping*/
+ &__pyx_tp_as_number___pyx_scope_struct_4_input, /*tp_as_number*/
+ &__pyx_tp_as_sequence___pyx_scope_struct_4_input, /*tp_as_sequence*/
+ &__pyx_tp_as_mapping___pyx_scope_struct_4_input, /*tp_as_mapping*/
0, /*tp_hash*/
0, /*tp_call*/
0, /*tp_str*/
0, /*tp_getattro*/
0, /*tp_setattro*/
- &__pyx_tp_as_buffer___pyx_scope_struct_2_input, /*tp_as_buffer*/
+ &__pyx_tp_as_buffer___pyx_scope_struct_4_input, /*tp_as_buffer*/
Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
0, /*tp_doc*/
- __pyx_tp_traverse_3_sa___pyx_scope_struct_2_input, /*tp_traverse*/
- __pyx_tp_clear_3_sa___pyx_scope_struct_2_input, /*tp_clear*/
+ __pyx_tp_traverse_3_sa___pyx_scope_struct_4_input, /*tp_traverse*/
+ __pyx_tp_clear_3_sa___pyx_scope_struct_4_input, /*tp_clear*/
0, /*tp_richcompare*/
0, /*tp_weaklistoffset*/
0, /*tp_iter*/
0, /*tp_iternext*/
- __pyx_methods_3_sa___pyx_scope_struct_2_input, /*tp_methods*/
+ __pyx_methods_3_sa___pyx_scope_struct_4_input, /*tp_methods*/
0, /*tp_members*/
0, /*tp_getset*/
0, /*tp_base*/
@@ -59446,7 +60493,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_input = {
0, /*tp_dictoffset*/
0, /*tp_init*/
0, /*tp_alloc*/
- __pyx_tp_new_3_sa___pyx_scope_struct_2_input, /*tp_new*/
+ __pyx_tp_new_3_sa___pyx_scope_struct_4_input, /*tp_new*/
0, /*tp_free*/
0, /*tp_is_gc*/
0, /*tp_bases*/
@@ -59480,11 +60527,11 @@ static struct PyModuleDef __pyx_moduledef = {
static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_1, __pyx_k_1, sizeof(__pyx_k_1), 0, 0, 1, 0},
- {&__pyx_n_s_101, __pyx_k_101, sizeof(__pyx_k_101), 0, 0, 1, 1},
- {&__pyx_n_s_102, __pyx_k_102, sizeof(__pyx_k_102), 0, 0, 1, 1},
- {&__pyx_kp_s_104, __pyx_k_104, sizeof(__pyx_k_104), 0, 0, 1, 0},
+ {&__pyx_kp_s_100, __pyx_k_100, sizeof(__pyx_k_100), 0, 0, 1, 0},
+ {&__pyx_kp_s_101, __pyx_k_101, sizeof(__pyx_k_101), 0, 0, 1, 0},
+ {&__pyx_n_s_103, __pyx_k_103, sizeof(__pyx_k_103), 0, 0, 1, 1},
+ {&__pyx_n_s_104, __pyx_k_104, sizeof(__pyx_k_104), 0, 0, 1, 1},
{&__pyx_kp_s_106, __pyx_k_106, sizeof(__pyx_k_106), 0, 0, 1, 0},
- {&__pyx_kp_s_107, __pyx_k_107, sizeof(__pyx_k_107), 0, 0, 1, 0},
{&__pyx_kp_s_108, __pyx_k_108, sizeof(__pyx_k_108), 0, 0, 1, 0},
{&__pyx_kp_s_109, __pyx_k_109, sizeof(__pyx_k_109), 0, 0, 1, 0},
{&__pyx_kp_s_110, __pyx_k_110, sizeof(__pyx_k_110), 0, 0, 1, 0},
@@ -59494,12 +60541,12 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_114, __pyx_k_114, sizeof(__pyx_k_114), 0, 0, 1, 0},
{&__pyx_kp_s_115, __pyx_k_115, sizeof(__pyx_k_115), 0, 0, 1, 0},
{&__pyx_kp_s_116, __pyx_k_116, sizeof(__pyx_k_116), 0, 0, 1, 0},
- {&__pyx_n_s_117, __pyx_k_117, sizeof(__pyx_k_117), 0, 0, 1, 1},
+ {&__pyx_kp_s_117, __pyx_k_117, sizeof(__pyx_k_117), 0, 0, 1, 0},
{&__pyx_kp_s_118, __pyx_k_118, sizeof(__pyx_k_118), 0, 0, 1, 0},
- {&__pyx_kp_s_119, __pyx_k_119, sizeof(__pyx_k_119), 0, 0, 1, 0},
- {&__pyx_n_s_121, __pyx_k_121, sizeof(__pyx_k_121), 0, 0, 1, 1},
- {&__pyx_kp_s_122, __pyx_k_122, sizeof(__pyx_k_122), 0, 0, 1, 0},
- {&__pyx_kp_s_123, __pyx_k_123, sizeof(__pyx_k_123), 0, 0, 1, 0},
+ {&__pyx_n_s_119, __pyx_k_119, sizeof(__pyx_k_119), 0, 0, 1, 1},
+ {&__pyx_kp_s_120, __pyx_k_120, sizeof(__pyx_k_120), 0, 0, 1, 0},
+ {&__pyx_kp_s_121, __pyx_k_121, sizeof(__pyx_k_121), 0, 0, 1, 0},
+ {&__pyx_n_s_123, __pyx_k_123, sizeof(__pyx_k_123), 0, 0, 1, 1},
{&__pyx_kp_s_124, __pyx_k_124, sizeof(__pyx_k_124), 0, 0, 1, 0},
{&__pyx_kp_s_125, __pyx_k_125, sizeof(__pyx_k_125), 0, 0, 1, 0},
{&__pyx_kp_s_126, __pyx_k_126, sizeof(__pyx_k_126), 0, 0, 1, 0},
@@ -59509,49 +60556,49 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_13, __pyx_k_13, sizeof(__pyx_k_13), 0, 0, 1, 0},
{&__pyx_kp_s_130, __pyx_k_130, sizeof(__pyx_k_130), 0, 0, 1, 0},
{&__pyx_kp_s_131, __pyx_k_131, sizeof(__pyx_k_131), 0, 0, 1, 0},
- {&__pyx_kp_s_134, __pyx_k_134, sizeof(__pyx_k_134), 0, 0, 1, 0},
- {&__pyx_kp_s_135, __pyx_k_135, sizeof(__pyx_k_135), 0, 0, 1, 0},
- {&__pyx_kp_s_139, __pyx_k_139, sizeof(__pyx_k_139), 0, 0, 1, 0},
+ {&__pyx_kp_s_132, __pyx_k_132, sizeof(__pyx_k_132), 0, 0, 1, 0},
+ {&__pyx_kp_s_133, __pyx_k_133, sizeof(__pyx_k_133), 0, 0, 1, 0},
+ {&__pyx_kp_s_136, __pyx_k_136, sizeof(__pyx_k_136), 0, 0, 1, 0},
+ {&__pyx_kp_s_137, __pyx_k_137, sizeof(__pyx_k_137), 0, 0, 1, 0},
{&__pyx_kp_s_14, __pyx_k_14, sizeof(__pyx_k_14), 0, 0, 1, 0},
- {&__pyx_kp_s_140, __pyx_k_140, sizeof(__pyx_k_140), 0, 0, 1, 0},
+ {&__pyx_kp_s_141, __pyx_k_141, sizeof(__pyx_k_141), 0, 0, 1, 0},
+ {&__pyx_kp_s_142, __pyx_k_142, sizeof(__pyx_k_142), 0, 0, 1, 0},
{&__pyx_kp_s_18, __pyx_k_18, sizeof(__pyx_k_18), 0, 0, 1, 0},
{&__pyx_kp_s_2, __pyx_k_2, sizeof(__pyx_k_2), 0, 0, 1, 0},
- {&__pyx_kp_s_22, __pyx_k_22, sizeof(__pyx_k_22), 0, 0, 1, 0},
- {&__pyx_n_s_24, __pyx_k_24, sizeof(__pyx_k_24), 0, 0, 1, 1},
- {&__pyx_kp_s_28, __pyx_k_28, sizeof(__pyx_k_28), 0, 0, 1, 0},
+ {&__pyx_kp_s_21, __pyx_k_21, sizeof(__pyx_k_21), 0, 0, 1, 0},
+ {&__pyx_kp_s_25, __pyx_k_25, sizeof(__pyx_k_25), 0, 0, 1, 0},
+ {&__pyx_n_s_27, __pyx_k_27, sizeof(__pyx_k_27), 0, 0, 1, 1},
{&__pyx_kp_s_3, __pyx_k_3, sizeof(__pyx_k_3), 0, 0, 1, 0},
- {&__pyx_kp_s_32, __pyx_k_32, sizeof(__pyx_k_32), 0, 0, 1, 0},
- {&__pyx_kp_s_39, __pyx_k_39, sizeof(__pyx_k_39), 0, 0, 1, 0},
+ {&__pyx_kp_s_31, __pyx_k_31, sizeof(__pyx_k_31), 0, 0, 1, 0},
+ {&__pyx_kp_s_35, __pyx_k_35, sizeof(__pyx_k_35), 0, 0, 1, 0},
{&__pyx_kp_s_4, __pyx_k_4, sizeof(__pyx_k_4), 0, 0, 1, 0},
{&__pyx_kp_s_42, __pyx_k_42, sizeof(__pyx_k_42), 0, 0, 1, 0},
- {&__pyx_kp_s_43, __pyx_k_43, sizeof(__pyx_k_43), 0, 0, 1, 0},
{&__pyx_kp_s_45, __pyx_k_45, sizeof(__pyx_k_45), 0, 0, 1, 0},
- {&__pyx_kp_s_47, __pyx_k_47, sizeof(__pyx_k_47), 0, 0, 1, 0},
- {&__pyx_kp_s_49, __pyx_k_49, sizeof(__pyx_k_49), 0, 0, 1, 0},
+ {&__pyx_kp_s_46, __pyx_k_46, sizeof(__pyx_k_46), 0, 0, 1, 0},
+ {&__pyx_kp_s_48, __pyx_k_48, sizeof(__pyx_k_48), 0, 0, 1, 0},
{&__pyx_kp_s_5, __pyx_k_5, sizeof(__pyx_k_5), 0, 0, 1, 0},
- {&__pyx_kp_s_53, __pyx_k_53, sizeof(__pyx_k_53), 0, 0, 1, 0},
- {&__pyx_kp_s_55, __pyx_k_55, sizeof(__pyx_k_55), 0, 0, 1, 0},
+ {&__pyx_kp_s_50, __pyx_k_50, sizeof(__pyx_k_50), 0, 0, 1, 0},
+ {&__pyx_kp_s_52, __pyx_k_52, sizeof(__pyx_k_52), 0, 0, 1, 0},
{&__pyx_kp_s_56, __pyx_k_56, sizeof(__pyx_k_56), 0, 0, 1, 0},
- {&__pyx_kp_s_57, __pyx_k_57, sizeof(__pyx_k_57), 0, 0, 1, 0},
+ {&__pyx_kp_s_58, __pyx_k_58, sizeof(__pyx_k_58), 0, 0, 1, 0},
{&__pyx_kp_s_59, __pyx_k_59, sizeof(__pyx_k_59), 0, 0, 1, 0},
{&__pyx_kp_s_6, __pyx_k_6, sizeof(__pyx_k_6), 0, 0, 1, 0},
- {&__pyx_kp_s_61, __pyx_k_61, sizeof(__pyx_k_61), 0, 0, 1, 0},
+ {&__pyx_kp_s_60, __pyx_k_60, sizeof(__pyx_k_60), 0, 0, 1, 0},
{&__pyx_kp_s_62, __pyx_k_62, sizeof(__pyx_k_62), 0, 0, 1, 0},
- {&__pyx_kp_s_63, __pyx_k_63, sizeof(__pyx_k_63), 0, 0, 1, 0},
{&__pyx_kp_s_64, __pyx_k_64, sizeof(__pyx_k_64), 0, 0, 1, 0},
{&__pyx_kp_s_65, __pyx_k_65, sizeof(__pyx_k_65), 0, 0, 1, 0},
{&__pyx_kp_s_66, __pyx_k_66, sizeof(__pyx_k_66), 0, 0, 1, 0},
{&__pyx_kp_s_67, __pyx_k_67, sizeof(__pyx_k_67), 0, 0, 1, 0},
- {&__pyx_n_s_68, __pyx_k_68, sizeof(__pyx_k_68), 0, 0, 1, 1},
- {&__pyx_n_s_69, __pyx_k_69, sizeof(__pyx_k_69), 0, 0, 1, 1},
+ {&__pyx_kp_s_68, __pyx_k_68, sizeof(__pyx_k_68), 0, 0, 1, 0},
+ {&__pyx_kp_s_69, __pyx_k_69, sizeof(__pyx_k_69), 0, 0, 1, 0},
{&__pyx_kp_s_7, __pyx_k_7, sizeof(__pyx_k_7), 0, 0, 1, 0},
- {&__pyx_kp_s_70, __pyx_k_70, sizeof(__pyx_k_70), 0, 0, 1, 0},
+ {&__pyx_n_s_70, __pyx_k_70, sizeof(__pyx_k_70), 0, 0, 1, 1},
+ {&__pyx_n_s_71, __pyx_k_71, sizeof(__pyx_k_71), 0, 0, 1, 1},
{&__pyx_kp_s_72, __pyx_k_72, sizeof(__pyx_k_72), 0, 0, 1, 0},
{&__pyx_kp_s_74, __pyx_k_74, sizeof(__pyx_k_74), 0, 0, 1, 0},
{&__pyx_kp_s_76, __pyx_k_76, sizeof(__pyx_k_76), 0, 0, 1, 0},
+ {&__pyx_kp_s_78, __pyx_k_78, sizeof(__pyx_k_78), 0, 0, 1, 0},
{&__pyx_kp_s_8, __pyx_k_8, sizeof(__pyx_k_8), 0, 0, 1, 0},
- {&__pyx_kp_s_81, __pyx_k_81, sizeof(__pyx_k_81), 0, 0, 1, 0},
- {&__pyx_kp_s_82, __pyx_k_82, sizeof(__pyx_k_82), 0, 0, 1, 0},
{&__pyx_kp_s_83, __pyx_k_83, sizeof(__pyx_k_83), 0, 0, 1, 0},
{&__pyx_kp_s_84, __pyx_k_84, sizeof(__pyx_k_84), 0, 0, 1, 0},
{&__pyx_kp_s_85, __pyx_k_85, sizeof(__pyx_k_85), 0, 0, 1, 0},
@@ -59561,10 +60608,10 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_kp_s_89, __pyx_k_89, sizeof(__pyx_k_89), 0, 0, 1, 0},
{&__pyx_kp_s_9, __pyx_k_9, sizeof(__pyx_k_9), 0, 0, 1, 0},
{&__pyx_kp_s_90, __pyx_k_90, sizeof(__pyx_k_90), 0, 0, 1, 0},
+ {&__pyx_kp_s_91, __pyx_k_91, sizeof(__pyx_k_91), 0, 0, 1, 0},
{&__pyx_kp_s_92, __pyx_k_92, sizeof(__pyx_k_92), 0, 0, 1, 0},
- {&__pyx_kp_s_93, __pyx_k_93, sizeof(__pyx_k_93), 0, 0, 1, 0},
- {&__pyx_kp_s_98, __pyx_k_98, sizeof(__pyx_k_98), 0, 0, 1, 0},
- {&__pyx_kp_s_99, __pyx_k_99, sizeof(__pyx_k_99), 0, 0, 1, 0},
+ {&__pyx_kp_s_94, __pyx_k_94, sizeof(__pyx_k_94), 0, 0, 1, 0},
+ {&__pyx_kp_s_95, __pyx_k_95, sizeof(__pyx_k_95), 0, 0, 1, 0},
{&__pyx_kp_s__0, __pyx_k__0, sizeof(__pyx_k__0), 0, 0, 1, 0},
{&__pyx_kp_s__1, __pyx_k__1, sizeof(__pyx_k__1), 0, 0, 1, 0},
{&__pyx_n_s__END_OF_FILE, __pyx_k__END_OF_FILE, sizeof(__pyx_k__END_OF_FILE), 0, 0, 1, 1},
@@ -59682,7 +60729,9 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_n_s__reachable, __pyx_k__reachable, sizeof(__pyx_k__reachable), 0, 0, 1, 1},
{&__pyx_n_s__reachable_buffer, __pyx_k__reachable_buffer, sizeof(__pyx_k__reachable_buffer), 0, 0, 1, 1},
{&__pyx_n_s__read_binary, __pyx_k__read_binary, sizeof(__pyx_k__read_binary), 0, 0, 1, 1},
+ {&__pyx_n_s__read_bitext, __pyx_k__read_bitext, sizeof(__pyx_k__read_bitext), 0, 0, 1, 1},
{&__pyx_n_s__read_text, __pyx_k__read_text, sizeof(__pyx_k__read_text), 0, 0, 1, 1},
+ {&__pyx_n_s__read_text_data, __pyx_k__read_text_data, sizeof(__pyx_k__read_text_data), 0, 0, 1, 1},
{&__pyx_n_s__res, __pyx_k__res, sizeof(__pyx_k__res), 0, 0, 1, 1},
{&__pyx_n_s__reset, __pyx_k__reset, sizeof(__pyx_k__reset), 0, 0, 1, 1},
{&__pyx_n_s__resource, __pyx_k__resource, sizeof(__pyx_k__resource), 0, 0, 1, 1},
@@ -59699,9 +60748,11 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
{&__pyx_n_s__seek, __pyx_k__seek, sizeof(__pyx_k__seek), 0, 0, 1, 1},
{&__pyx_n_s__setdefault, __pyx_k__setdefault, sizeof(__pyx_k__setdefault), 0, 0, 1, 1},
{&__pyx_n_s__shortest, __pyx_k__shortest, sizeof(__pyx_k__shortest), 0, 0, 1, 1},
+ {&__pyx_n_s__side, __pyx_k__side, sizeof(__pyx_k__side), 0, 0, 1, 1},
{&__pyx_n_s__size, __pyx_k__size, sizeof(__pyx_k__size), 0, 0, 1, 1},
{&__pyx_n_s__skip, __pyx_k__skip, sizeof(__pyx_k__skip), 0, 0, 1, 1},
{&__pyx_n_s__sorted, __pyx_k__sorted, sizeof(__pyx_k__sorted), 0, 0, 1, 1},
+ {&__pyx_n_s__source, __pyx_k__source, sizeof(__pyx_k__source), 0, 0, 1, 1},
{&__pyx_n_s__spanlen, __pyx_k__spanlen, sizeof(__pyx_k__spanlen), 0, 0, 1, 1},
{&__pyx_n_s__split, __pyx_k__split, sizeof(__pyx_k__split), 0, 0, 1, 1},
{&__pyx_n_s__start, __pyx_k__start, sizeof(__pyx_k__start), 0, 0, 1, 1},
@@ -59734,7 +60785,7 @@ static int __Pyx_InitCachedBuiltins(void) {
__pyx_builtin_IndexError = __Pyx_GetName(__pyx_b, __pyx_n_s__IndexError); if (!__pyx_builtin_IndexError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_builtin_range = __Pyx_GetName(__pyx_b, __pyx_n_s__range); if (!__pyx_builtin_range) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 27; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_builtin_TypeError = __Pyx_GetName(__pyx_b, __pyx_n_s__TypeError); if (!__pyx_builtin_TypeError) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __pyx_builtin_enumerate = __Pyx_GetName(__pyx_b, __pyx_n_s__enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 67; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_builtin_enumerate = __Pyx_GetName(__pyx_b, __pyx_n_s__enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 78; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_builtin_map = __Pyx_GetName(__pyx_b, __pyx_n_s__map); if (!__pyx_builtin_map) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_builtin_Exception = __Pyx_GetName(__pyx_b, __pyx_n_s__Exception); if (!__pyx_builtin_Exception) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_builtin_zip = __Pyx_GetName(__pyx_b, __pyx_n_s__zip); if (!__pyx_builtin_zip) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 368; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -59802,28 +60853,28 @@ static int __Pyx_InitCachedConstants(void) {
__Pyx_GIVEREF(__pyx_int_1000);
__Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_12));
- /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":62
+ /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":65
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__Pyx_GIVEREF(((PyObject *)__pyx_n_s__terminal));
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- __pyx_k_codeobj_138 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_137, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_139, __pyx_n_s__sym_fromstring, 104, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_138)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 104; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_139));
+ __pyx_k_codeobj_140 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_k_tuple_139, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_141, __pyx_n_s__sym_fromstring, 104, __pyx_empty_bytes); if (unlikely(!__pyx_k_codeobj_140)) {__pyx_filename = __pyx_f[10]; __pyx_lineno = 104; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_RefNannyFinishContext();
return 0;
__pyx_L1_error:;
@@ -60776,12 +61861,16 @@ PyMODINIT_FUNC PyInit__sa(void)
if (__Pyx_SetVtable(__pyx_type_3_sa_HieroCachingRuleFactory.tp_dict, __pyx_vtabptr_3_sa_HieroCachingRuleFactory) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 201; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
if (__Pyx_SetAttrString(__pyx_m, "HieroCachingRuleFactory", (PyObject *)&__pyx_type_3_sa_HieroCachingRuleFactory) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 201; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__pyx_ptype_3_sa_HieroCachingRuleFactory = &__pyx_type_3_sa_HieroCachingRuleFactory;
- if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct__compute_stats) < 0) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __pyx_ptype_3_sa___pyx_scope_struct__compute_stats = &__pyx_type_3_sa___pyx_scope_struct__compute_stats;
- if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_1___iter__) < 0) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __pyx_ptype_3_sa___pyx_scope_struct_1___iter__ = &__pyx_type_3_sa___pyx_scope_struct_1___iter__;
- if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_2_input) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 919; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
- __pyx_ptype_3_sa___pyx_scope_struct_2_input = &__pyx_type_3_sa___pyx_scope_struct_2_input;
+ if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct__read_bitext) < 0) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 71; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_ptype_3_sa___pyx_scope_struct__read_bitext = &__pyx_type_3_sa___pyx_scope_struct__read_bitext;
+ if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_1_genexpr) < 0) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 73; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_ptype_3_sa___pyx_scope_struct_1_genexpr = &__pyx_type_3_sa___pyx_scope_struct_1_genexpr;
+ if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_2_compute_stats) < 0) {__pyx_filename = __pyx_f[9]; __pyx_lineno = 36; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_ptype_3_sa___pyx_scope_struct_2_compute_stats = &__pyx_type_3_sa___pyx_scope_struct_2_compute_stats;
+ if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_3___iter__) < 0) {__pyx_filename = __pyx_f[7]; __pyx_lineno = 141; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_ptype_3_sa___pyx_scope_struct_3___iter__ = &__pyx_type_3_sa___pyx_scope_struct_3___iter__;
+ if (PyType_Ready(&__pyx_type_3_sa___pyx_scope_struct_4_input) < 0) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 919; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_ptype_3_sa___pyx_scope_struct_4_input = &__pyx_type_3_sa___pyx_scope_struct_4_input;
/*--- Type import code ---*/
/*--- Variable import code ---*/
/*--- Function import code ---*/
@@ -60844,7 +61933,7 @@ PyMODINIT_FUNC PyInit__sa(void)
__pyx_t_2 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__getLogger); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
- __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_136), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_138), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_1);
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
if (PyObject_SetAttr(__pyx_m, __pyx_n_s__logger, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -60859,7 +61948,7 @@ PyMODINIT_FUNC PyInit__sa(void)
*/
__pyx_t_1 = __Pyx_PyBool_FromLong(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_1);
- __pyx_k_38 = __pyx_t_1;
+ __pyx_k_41 = __pyx_t_1;
__Pyx_GIVEREF(__pyx_t_1);
__pyx_t_1 = 0;
@@ -60986,9 +62075,9 @@ PyMODINIT_FUNC PyInit__sa(void)
__Pyx_GOTREF(__pyx_t_2);
__pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 16; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_3);
- __Pyx_INCREF(((PyObject *)__pyx_kp_s_140));
- PyTuple_SET_ITEM(__pyx_t_3, 0, ((PyObject *)__pyx_kp_s_140));
- __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_140));
+ __Pyx_INCREF(((PyObject *)__pyx_kp_s_142));
+ PyTuple_SET_ITEM(__pyx_t_3, 0, ((PyObject *)__pyx_kp_s_142));
+ __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_142));
PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_2);
__Pyx_GIVEREF(__pyx_t_2);
__pyx_t_2 = 0;
@@ -61009,7 +62098,7 @@ PyMODINIT_FUNC PyInit__sa(void)
*/
__pyx_t_2 = __Pyx_PyBool_FromLong(0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 39; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
__Pyx_GOTREF(__pyx_t_2);
- __pyx_k_97 = __pyx_t_2;
+ __pyx_k_99 = __pyx_t_2;
__Pyx_GIVEREF(__pyx_t_2);
__pyx_t_2 = 0;
@@ -61451,6 +62540,10 @@ bad:
return -1;
}
+static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname) {
+ PyErr_Format(PyExc_NameError, "free variable '%s' referenced before assignment in enclosing scope", varname);
+}
+
static CYTHON_INLINE long __Pyx_div_long(long a, long b) {
long q = a / b;
long r = a - q*b;
@@ -61836,6 +62929,86 @@ bad:
return module;
}
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
+#if CYTHON_COMPILING_IN_PYPY
+ return PyObject_RichCompareBool(s1, s2, equals);
+#else
+ if (s1 == s2) {
+ return (equals == Py_EQ);
+ } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
+ if (PyBytes_GET_SIZE(s1) != PyBytes_GET_SIZE(s2)) {
+ return (equals == Py_NE);
+ } else if (PyBytes_GET_SIZE(s1) == 1) {
+ if (equals == Py_EQ)
+ return (PyBytes_AS_STRING(s1)[0] == PyBytes_AS_STRING(s2)[0]);
+ else
+ return (PyBytes_AS_STRING(s1)[0] != PyBytes_AS_STRING(s2)[0]);
+ } else {
+ int result = memcmp(PyBytes_AS_STRING(s1), PyBytes_AS_STRING(s2), (size_t)PyBytes_GET_SIZE(s1));
+ return (equals == Py_EQ) ? (result == 0) : (result != 0);
+ }
+ } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
+ return (equals == Py_NE);
+ } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
+ return (equals == Py_NE);
+ } else {
+ int result;
+ PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+ if (!py_result)
+ return -1;
+ result = __Pyx_PyObject_IsTrue(py_result);
+ Py_DECREF(py_result);
+ return result;
+ }
+#endif
+}
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
+#if CYTHON_COMPILING_IN_PYPY
+ return PyObject_RichCompareBool(s1, s2, equals);
+#else
+ if (s1 == s2) {
+ return (equals == Py_EQ);
+ } else if (PyUnicode_CheckExact(s1) & PyUnicode_CheckExact(s2)) {
+ #if CYTHON_PEP393_ENABLED
+ if ((PyUnicode_READY(s1) < 0) || (PyUnicode_READY(s2) < 0))
+ return -1;
+ if (PyUnicode_GET_LENGTH(s1) != PyUnicode_GET_LENGTH(s2)) {
+ return (equals == Py_NE);
+ } else if (PyUnicode_GET_LENGTH(s1) == 1) {
+ Py_UCS4 ch1 = PyUnicode_READ_CHAR(s1, 0);
+ Py_UCS4 ch2 = PyUnicode_READ_CHAR(s2, 0);
+ return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+ #else
+ if (PyUnicode_GET_SIZE(s1) != PyUnicode_GET_SIZE(s2)) {
+ return (equals == Py_NE);
+ } else if (PyUnicode_GET_SIZE(s1) == 1) {
+ Py_UNICODE ch1 = PyUnicode_AS_UNICODE(s1)[0];
+ Py_UNICODE ch2 = PyUnicode_AS_UNICODE(s2)[0];
+ return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+ #endif
+ } else {
+ int result = PyUnicode_Compare(s1, s2);
+ if ((result == -1) && unlikely(PyErr_Occurred()))
+ return -1;
+ return (equals == Py_EQ) ? (result == 0) : (result != 0);
+ }
+ } else if ((s1 == Py_None) & PyUnicode_CheckExact(s2)) {
+ return (equals == Py_NE);
+ } else if ((s2 == Py_None) & PyUnicode_CheckExact(s1)) {
+ return (equals == Py_NE);
+ } else {
+ int result;
+ PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+ if (!py_result)
+ return -1;
+ result = __Pyx_PyObject_IsTrue(py_result);
+ Py_DECREF(py_result);
+ return result;
+ }
+#endif
+}
+
static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject* x) {
const unsigned char neg_one = (unsigned char)-1, const_zero = 0;
const int is_unsigned = neg_one > const_zero;
diff --git a/python/src/sa/data_array.pxi b/python/src/sa/data_array.pxi
index 1c044694..7a102a7e 100644
--- a/python/src/sa/data_array.pxi
+++ b/python/src/sa/data_array.pxi
@@ -14,7 +14,7 @@ cdef class DataArray:
cdef IntList sent_index
cdef bint use_sent_id
- def __cinit__(self, from_binary=None, from_text=None, bint use_sent_id=False):
+ def __cinit__(self, from_binary=None, from_text=None, side=None, bint use_sent_id=False):
self.word2id = {"END_OF_FILE":0, "END_OF_LINE":1}
self.id2word = ["END_OF_FILE", "END_OF_LINE"]
self.data = IntList(1000,1000)
@@ -24,7 +24,10 @@ cdef class DataArray:
if from_binary:
self.read_binary(from_binary)
elif from_text:
- self.read_text(from_text)
+ if side:
+ self.read_bitext(from_text, (0 if side == 'source' else 1))
+ else:
+ self.read_text(from_text)
def __len__(self):
return len(self.data)
@@ -62,21 +65,30 @@ cdef class DataArray:
f.write("\n")
def read_text(self, char* filename):
- cdef int word_count = 0
with gzip_or_text(filename) as fp:
- for line_num, line in enumerate(fp):
- self.sent_index.append(word_count)
- for word in line.split():
- self.data.append(self.get_id(word))
- if self.use_sent_id:
- self.sent_id.append(line_num)
- word_count = word_count + 1
- self.data.append(1)
+ self.read_text_data(fp)
+
+ def read_bitext(self, char* filename, int side):
+ with gzip_or_text(filename) as fp:
+ data = (line.split(' ||| ')[side] for line in fp)
+ self.read_text_data(data)
+
+ def read_text_data(self, data):
+ cdef int word_count = 0
+ for line_num, line in enumerate(data):
+ self.sent_index.append(word_count)
+ for word in line.split():
+ self.data.append(self.get_id(word))
if self.use_sent_id:
self.sent_id.append(line_num)
word_count = word_count + 1
- self.data.append(0)
- self.sent_index.append(word_count)
+ self.data.append(1)
+ if self.use_sent_id:
+ self.sent_id.append(line_num)
+ word_count = word_count + 1
+ self.data.append(0)
+ self.sent_index.append(word_count)
+
def read_binary(self, char* filename):
cdef FILE* f
diff --git a/python/src/sa/suffix_array.pxi b/python/src/sa/suffix_array.pxi
index 20e6261d..d86e8ea6 100644
--- a/python/src/sa/suffix_array.pxi
+++ b/python/src/sa/suffix_array.pxi
@@ -8,14 +8,14 @@ cdef class SuffixArray:
cdef IntList sa
cdef IntList ha
- def __cinit__(self, from_binary=None, from_text=None):
+ def __cinit__(self, from_binary=None, from_text=None, side=None):
self.darray = DataArray()
self.sa = IntList()
self.ha = IntList()
if from_binary:
self.read_binary(from_binary)
elif from_text:
- self.read_text(from_text)
+ self.read_text(from_text, side)
def __getitem__(self, i):
return self.sa.arr[i]
@@ -29,13 +29,13 @@ cdef class SuffixArray:
def getSentPos(self, loc):
return self.darray.getSentPos(loc)
- def read_text(self, char* filename):
+ def read_text(self, filename, side):
'''Constructs suffix array using the algorithm
of Larsson & Sadahkane (1999)'''
cdef int V, N, i, j, h, a_i, n, current_run, skip
cdef IntList isa, word_count
- self.darray = DataArray(from_text=filename, use_sent_id=True)
+ self.darray = DataArray(from_text=filename, side=side, use_sent_id=True)
N = len(self.darray)
V = len(self.darray.id2word)