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author | redpony <redpony@ec762483-ff6d-05da-a07a-a48fb63a330f> | 2010-10-18 23:24:01 +0000 |
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committer | redpony <redpony@ec762483-ff6d-05da-a07a-a48fb63a330f> | 2010-10-18 23:24:01 +0000 |
commit | de379496ee411993dff94e52f393f6e19437a204 (patch) | |
tree | a3fdb3b299100384e0a82dd2bc424fd52177d411 /klm | |
parent | 08ff0e0332b562dd9c1f36fce24439db81287c68 (diff) |
kenneth's LM preliminary integration
git-svn-id: https://ws10smt.googlecode.com/svn/trunk@681 ec762483-ff6d-05da-a07a-a48fb63a330f
Diffstat (limited to 'klm')
50 files changed, 4814 insertions, 0 deletions
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Such new +versions will be similar in spirit to the present version, but may +differ in detail to address new problems or concerns. + + Each version is given a distinguishing version number. If the +Library as you received it specifies that a certain numbered version +of the GNU Lesser General Public License "or any later version" +applies to it, you have the option of following the terms and +conditions either of that published version or of any later version +published by the Free Software Foundation. If the Library as you +received it does not specify a version number of the GNU Lesser +General Public License, you may choose any version of the GNU Lesser +General Public License ever published by the Free Software Foundation. + + If the Library as you received it specifies that a proxy can decide +whether future versions of the GNU Lesser General Public License shall +apply, that proxy's public statement of acceptance of any version is +permanent authorization for you to choose that version for the +Library. diff --git a/klm/LICENSE b/klm/LICENSE new file mode 100644 index 00000000..20b76c13 --- /dev/null +++ b/klm/LICENSE @@ -0,0 +1,19 @@ +Most of the code here is licensed under the LGPL. There are exceptions which have their own licenses, listed below. See comments in those files for more details. + +util/murmur_hash.cc is under the MIT license. +util/string_piece.hh and util/string_piece.cc are Google code and contains its own license. + +For the rest: + + Avenue code is free software: you can redistribute it and/or modify + it under the terms of the GNU Lesser General Public License as published + by the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + Avenue code is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Lesser General Public License for more details. + + You should have received a copy of the GNU Lesser General Public License + along with Avenue code. If not, see <http://www.gnu.org/licenses/>. diff --git a/klm/README b/klm/README new file mode 100644 index 00000000..8d1050a8 --- /dev/null +++ b/klm/README @@ -0,0 +1,31 @@ +Language model inference code by Kenneth Heafield <infer at kheafield.com> +See LICENSE for list of files by other people and their licenses. + +Compile: ./compile.sh +Run: ./query lm/test.arpa <text +Build binary format: ./build_binary lm/test.arpa test.binary +Use binary format: ./query test.binary <text + +Test (uses Boost): ./test.sh + +Currently, it loads an ARPA file in 2/3 the time SRI takes and uses 6.5 GB when SRI takes 11 GB. These are compared to the default SRI build (i.e. without their smaller structures). I'm working on optimizing this even further. + +Binary format via mmap is supported. Run ./build_binary to make one then pass the binary file name instead. + +Currently, it assumes POSIX APIs for errno, sterror_r, open, close, mmap, munmap, ftruncate, fstat, and read. This is tested on Linux and the non-UNIX Mac OS X. I welcome submissions porting (via #ifdef) to other systems (e.g. Windows) but proudly have no machine on which to test it. + +A brief note to Mac OS X users: your gcc is too old to recognize the pack pragma. The warning effectively means that, on 64-bit machines, the model will use 16 bytes instead of 12 bytes per n-gram of maximum order. + +It does not depend on Boost or ICU. However, if you use Boost and/or ICU in the rest of your code, you should define USE_BOOST and/or USE_ICU in util/string_piece.hh. Defining USE_BOOST will let you hash StringPiece. Defining USE_ICU will use ICU's StringPiece to prevent a conflict with the one provided here. By the way, ICU's StringPiece is buggy and I reported this bug: http://bugs.icu-project.org/trac/ticket/7924 . + +The recommend way to use this: +Copy the code and distribute with your decoder. +Set USE_ICU and USE_BOOST at the top of util/string_piece.hh as instructed above. +Look at compile.sh and reimplement using your build system. +Use either the interface in lm/ngram.hh or lm/virtual_interface.hh +Interface documentation is in comments of lm/virtual_interface.hh (including for lm/ngram.hh). + +I recommend copying the code and distributing it with your decoder. However, please send improvements to me so that they can be integrated into the package. + +Also included: +A wrapper to SRI with the same interface. diff --git a/klm/clean.sh b/klm/clean.sh new file mode 100755 index 00000000..685a2340 --- /dev/null +++ b/klm/clean.sh @@ -0,0 +1,2 @@ +#!/bin/bash +rm */*.o query build_binary */*_test diff --git a/klm/compile.sh b/klm/compile.sh new file mode 100755 index 00000000..d16dbe66 --- /dev/null +++ b/klm/compile.sh @@ -0,0 +1,11 @@ +#!/bin/bash +#This is just an example compilation. You should integrate these files into your build system. I can provide boost jam if you want. +#If your code uses ICU, edit util/string_piece.hh and uncomment #define USE_ICU + +set -e + +for i in util/{ersatz_progress,exception,file_piece,murmur_hash,scoped,string_piece,mmap} lm/{exception,virtual_interface,ngram}; do + g++ -I. -O3 -c $i.cc -o $i.o +done +g++ -I. -O3 lm/ngram_build_binary.cc {lm,util}/*.o -o build_binary +g++ -I. -O3 lm/ngram_query.cc {lm,util}/*.o -o query diff --git a/klm/lm/Makefile.am b/klm/lm/Makefile.am new file mode 100644 index 00000000..a0c49eb4 --- /dev/null +++ b/klm/lm/Makefile.am @@ -0,0 +1,20 @@ +if HAVE_GTEST +noinst_PROGRAMS = \ + ngram_test +TESTS = ngram_test +endif + +noinst_LIBRARIES = libklm.a + +libklm_a_SOURCES = \ + exception.cc \ + ngram.cc \ + ngram_build_binary.cc \ + ngram_query.cc \ + virtual_interface.cc + +ngram_test_SOURCES = ngram_test.cc +ngram_test_LDADD = ../util/libklm_util.a + +AM_CPPFLAGS = -W -Wall -Wno-sign-compare $(GTEST_CPPFLAGS) -I.. + diff --git a/klm/lm/exception.cc b/klm/lm/exception.cc new file mode 100644 index 00000000..59a1650d --- /dev/null +++ b/klm/lm/exception.cc @@ -0,0 +1,21 @@ +#include "lm/exception.hh" + +#include<errno.h> +#include<stdio.h> + +namespace lm { + +LoadException::LoadException() throw() {} +LoadException::~LoadException() throw() {} +VocabLoadException::VocabLoadException() throw() {} +VocabLoadException::~VocabLoadException() throw() {} + +FormatLoadException::FormatLoadException() throw() {} +FormatLoadException::~FormatLoadException() throw() {} + +SpecialWordMissingException::SpecialWordMissingException(StringPiece which) throw() { + *this << "Missing special word " << which; +} +SpecialWordMissingException::~SpecialWordMissingException() throw() {} + +} // namespace lm diff --git a/klm/lm/exception.hh b/klm/lm/exception.hh new file mode 100644 index 00000000..95109012 --- /dev/null +++ b/klm/lm/exception.hh @@ -0,0 +1,40 @@ +#ifndef LM_EXCEPTION__ +#define LM_EXCEPTION__ + +#include "util/exception.hh" +#include "util/string_piece.hh" + +#include <exception> +#include <string> + +namespace lm { + +class LoadException : public util::Exception { + public: + virtual ~LoadException() throw(); + + protected: + LoadException() throw(); +}; + +class VocabLoadException : public LoadException { + public: + virtual ~VocabLoadException() throw(); + VocabLoadException() throw(); +}; + +class FormatLoadException : public LoadException { + public: + FormatLoadException() throw(); + ~FormatLoadException() throw(); +}; + +class SpecialWordMissingException : public VocabLoadException { + public: + explicit SpecialWordMissingException(StringPiece which) throw(); + ~SpecialWordMissingException() throw(); +}; + +} // namespace lm + +#endif diff --git a/klm/lm/facade.hh b/klm/lm/facade.hh new file mode 100644 index 00000000..8b186017 --- /dev/null +++ b/klm/lm/facade.hh @@ -0,0 +1,64 @@ +#ifndef LM_FACADE__ +#define LM_FACADE__ + +#include "lm/virtual_interface.hh" +#include "util/string_piece.hh" + +#include <string> + +namespace lm { +namespace base { + +// Common model interface that depends on knowing the specific classes. +// Curiously recurring template pattern. +template <class Child, class StateT, class VocabularyT> class ModelFacade : public Model { + public: + typedef StateT State; + typedef VocabularyT Vocabulary; + + // Default Score function calls FullScore. Model can override this. + float Score(const State &in_state, const WordIndex new_word, State &out_state) const { + return static_cast<const Child*>(this)->FullScore(in_state, new_word, out_state).prob; + } + + /* Translate from void* to State */ + FullScoreReturn FullScore(const void *in_state, const WordIndex new_word, void *out_state) const { + return static_cast<const Child*>(this)->FullScore( + *reinterpret_cast<const State*>(in_state), + new_word, + *reinterpret_cast<State*>(out_state)); + } + float Score(const void *in_state, const WordIndex new_word, void *out_state) const { + return static_cast<const Child*>(this)->Score( + *reinterpret_cast<const State*>(in_state), + new_word, + *reinterpret_cast<State*>(out_state)); + } + + const State &BeginSentenceState() const { return begin_sentence_; } + const State &NullContextState() const { return null_context_; } + const Vocabulary &GetVocabulary() const { return *static_cast<const Vocabulary*>(&BaseVocabulary()); } + + protected: + ModelFacade() : Model(sizeof(State)) {} + + virtual ~ModelFacade() {} + + // begin_sentence and null_context can disappear after. vocab should stay. + void Init(const State &begin_sentence, const State &null_context, const Vocabulary &vocab, unsigned char order) { + begin_sentence_ = begin_sentence; + null_context_ = null_context; + begin_sentence_memory_ = &begin_sentence_; + null_context_memory_ = &null_context_; + base_vocab_ = &vocab; + order_ = order; + } + + private: + State begin_sentence_, null_context_; +}; + +} // mamespace base +} // namespace lm + +#endif // LM_FACADE__ diff --git a/klm/lm/ngram.cc b/klm/lm/ngram.cc new file mode 100644 index 00000000..a87c82aa --- /dev/null +++ b/klm/lm/ngram.cc @@ -0,0 +1,522 @@ +#include "lm/ngram.hh" + +#include "lm/exception.hh" +#include "util/file_piece.hh" +#include "util/joint_sort.hh" +#include "util/murmur_hash.hh" +#include "util/probing_hash_table.hh" + +#include <algorithm> +#include <functional> +#include <numeric> +#include <limits> +#include <string> + +#include <cmath> +#include <fcntl.h> +#include <errno.h> +#include <stdlib.h> +#include <sys/mman.h> +#include <sys/types.h> +#include <sys/stat.h> +#include <unistd.h> + +namespace lm { +namespace ngram { + +size_t hash_value(const State &state) { + return util::MurmurHashNative(state.history_, sizeof(WordIndex) * state.valid_length_); +} + +namespace detail { +uint64_t HashForVocab(const char *str, std::size_t len) { + // This proved faster than Boost's hash in speed trials: total load time Murmur 67090000, Boost 72210000 + // Chose to use 64A instead of native so binary format will be portable across 64 and 32 bit. + return util::MurmurHash64A(str, len, 0); +} + +void Prob::SetBackoff(float to) { + UTIL_THROW(FormatLoadException, "Attempt to set backoff " << to << " for the highest order n-gram"); +} + +// Normally static initialization is a bad idea but MurmurHash is pure arithmetic, so this is ok. +const uint64_t kUnknownHash = HashForVocab("<unk>", 5); +// Sadly some LMs have <UNK>. +const uint64_t kUnknownCapHash = HashForVocab("<UNK>", 5); + +} // namespace detail + +SortedVocabulary::SortedVocabulary() : begin_(NULL), end_(NULL) {} + +std::size_t SortedVocabulary::Size(std::size_t entries, float ignored) { + // Lead with the number of entries. + return sizeof(uint64_t) + sizeof(Entry) * entries; +} + +void SortedVocabulary::Init(void *start, std::size_t allocated, std::size_t entries) { + assert(allocated >= Size(entries)); + // Leave space for number of entries. + begin_ = reinterpret_cast<Entry*>(reinterpret_cast<uint64_t*>(start) + 1); + end_ = begin_; + saw_unk_ = false; +} + +WordIndex SortedVocabulary::Insert(const StringPiece &str) { + uint64_t hashed = detail::HashForVocab(str); + if (hashed == detail::kUnknownHash || hashed == detail::kUnknownCapHash) { + saw_unk_ = true; + return 0; + } + end_->key = hashed; + ++end_; + // This is 1 + the offset where it was inserted to make room for unk. + return end_ - begin_; +} + +bool SortedVocabulary::FinishedLoading(detail::ProbBackoff *reorder_vocab) { + util::JointSort(begin_, end_, reorder_vocab + 1); + SetSpecial(Index("<s>"), Index("</s>"), 0, end_ - begin_ + 1); + // Save size. + *(reinterpret_cast<uint64_t*>(begin_) - 1) = end_ - begin_; + return saw_unk_; +} + +void SortedVocabulary::LoadedBinary() { + end_ = begin_ + *(reinterpret_cast<const uint64_t*>(begin_) - 1); + SetSpecial(Index("<s>"), Index("</s>"), 0, end_ - begin_ + 1); +} + +namespace detail { + +template <class Search> MapVocabulary<Search>::MapVocabulary() {} + +template <class Search> void MapVocabulary<Search>::Init(void *start, std::size_t allocated, std::size_t entries) { + lookup_ = Lookup(start, allocated); + available_ = 1; + // Later if available_ != expected_available_ then we can throw UnknownMissingException. + saw_unk_ = false; +} + +template <class Search> WordIndex MapVocabulary<Search>::Insert(const StringPiece &str) { + uint64_t hashed = HashForVocab(str); + // Prevent unknown from going into the table. + if (hashed == kUnknownHash || hashed == kUnknownCapHash) { + saw_unk_ = true; + return 0; + } else { + lookup_.Insert(Lookup::Packing::Make(hashed, available_)); + return available_++; + } +} + +template <class Search> bool MapVocabulary<Search>::FinishedLoading(ProbBackoff *reorder_vocab) { + lookup_.FinishedInserting(); + SetSpecial(Index("<s>"), Index("</s>"), 0, available_); + return saw_unk_; +} + +template <class Search> void MapVocabulary<Search>::LoadedBinary() { + lookup_.LoadedBinary(); + SetSpecial(Index("<s>"), Index("</s>"), 0, available_); +} + +/* All of the entropy is in low order bits and boost::hash does poorly with + * these. Odd numbers near 2^64 chosen by mashing on the keyboard. There is a + * stable point: 0. But 0 is <unk> which won't be queried here anyway. + */ +inline uint64_t CombineWordHash(uint64_t current, const WordIndex next) { + uint64_t ret = (current * 8978948897894561157ULL) ^ (static_cast<uint64_t>(next) * 17894857484156487943ULL); + return ret; +} + +uint64_t ChainedWordHash(const WordIndex *word, const WordIndex *word_end) { + if (word == word_end) return 0; + uint64_t current = static_cast<uint64_t>(*word); + for (++word; word != word_end; ++word) { + current = CombineWordHash(current, *word); + } + return current; +} + +bool IsEntirelyWhiteSpace(const StringPiece &line) { + for (size_t i = 0; i < static_cast<size_t>(line.size()); ++i) { + if (!isspace(line.data()[i])) return false; + } + return true; +} + +void ReadARPACounts(util::FilePiece &in, std::vector<size_t> &number) { + number.clear(); + StringPiece line; + if (!IsEntirelyWhiteSpace(line = in.ReadLine())) UTIL_THROW(FormatLoadException, "First line was \"" << line << "\" not blank"); + if ((line = in.ReadLine()) != "\\data\\") UTIL_THROW(FormatLoadException, "second line was \"" << line << "\" not \\data\\."); + while (!IsEntirelyWhiteSpace(line = in.ReadLine())) { + if (line.size() < 6 || strncmp(line.data(), "ngram ", 6)) UTIL_THROW(FormatLoadException, "count line \"" << line << "\"doesn't begin with \"ngram \""); + // So strtol doesn't go off the end of line. + std::string remaining(line.data() + 6, line.size() - 6); + char *end_ptr; + unsigned long int length = std::strtol(remaining.c_str(), &end_ptr, 10); + if ((end_ptr == remaining.c_str()) || (length - 1 != number.size())) UTIL_THROW(FormatLoadException, "ngram count lengths should be consecutive starting with 1: " << line); + if (*end_ptr != '=') UTIL_THROW(FormatLoadException, "Expected = immediately following the first number in the count line " << line); + ++end_ptr; + const char *start = end_ptr; + long int count = std::strtol(start, &end_ptr, 10); + if (count < 0) UTIL_THROW(FormatLoadException, "Negative n-gram count " << count); + if (start == end_ptr) UTIL_THROW(FormatLoadException, "Couldn't parse n-gram count from " << line); + number.push_back(count); + } +} + +void ReadNGramHeader(util::FilePiece &in, unsigned int length) { + StringPiece line; + while (IsEntirelyWhiteSpace(line = in.ReadLine())) {} + std::stringstream expected; + expected << '\\' << length << "-grams:"; + if (line != expected.str()) UTIL_THROW(FormatLoadException, "Was expecting n-gram header " << expected.str() << " but got " << line << " instead."); +} + +// Special unigram reader because unigram's data structure is different and because we're inserting vocab words. +template <class Voc> void Read1Grams(util::FilePiece &f, const size_t count, Voc &vocab, ProbBackoff *unigrams) { + ReadNGramHeader(f, 1); + for (size_t i = 0; i < count; ++i) { + try { + float prob = f.ReadFloat(); + if (f.get() != '\t') UTIL_THROW(FormatLoadException, "Expected tab after probability"); + ProbBackoff &value = unigrams[vocab.Insert(f.ReadDelimited())]; + value.prob = prob; + switch (f.get()) { + case '\t': + value.SetBackoff(f.ReadFloat()); + if ((f.get() != '\n')) UTIL_THROW(FormatLoadException, "Expected newline after backoff"); + break; + case '\n': + value.ZeroBackoff(); + break; + default: + UTIL_THROW(FormatLoadException, "Expected tab or newline after unigram"); + } + } catch(util::Exception &e) { + e << " in the " << i << "th 1-gram at byte " << f.Offset(); + throw; + } + } + if (f.ReadLine().size()) UTIL_THROW(FormatLoadException, "Expected blank line after unigrams at byte " << f.Offset()); +} + +template <class Voc, class Store> void ReadNGrams(util::FilePiece &f, const unsigned int n, const size_t count, const Voc &vocab, Store &store) { + ReadNGramHeader(f, n); + + // vocab ids of words in reverse order + WordIndex vocab_ids[n]; + typename Store::Packing::Value value; + for (size_t i = 0; i < count; ++i) { + try { + value.prob = f.ReadFloat(); + for (WordIndex *vocab_out = &vocab_ids[n-1]; vocab_out >= vocab_ids; --vocab_out) { + *vocab_out = vocab.Index(f.ReadDelimited()); + } + uint64_t key = ChainedWordHash(vocab_ids, vocab_ids + n); + + switch (f.get()) { + case '\t': + value.SetBackoff(f.ReadFloat()); + if ((f.get() != '\n')) UTIL_THROW(FormatLoadException, "Expected newline after backoff"); + break; + case '\n': + value.ZeroBackoff(); + break; + default: + UTIL_THROW(FormatLoadException, "Expected tab or newline after n-gram"); + } + store.Insert(Store::Packing::Make(key, value)); + } catch(util::Exception &e) { + e << " in the " << i << "th " << n << "-gram at byte " << f.Offset(); + throw; + } + } + + if (f.ReadLine().size()) UTIL_THROW(FormatLoadException, "Expected blank line after " << n << "-grams at byte " << f.Offset()); + store.FinishedInserting(); +} + +template <class Search, class VocabularyT> size_t GenericModel<Search, VocabularyT>::Size(const std::vector<size_t> &counts, const Config &config) { + if (counts.size() > kMaxOrder) UTIL_THROW(FormatLoadException, "This model has order " << counts.size() << ". Edit ngram.hh's kMaxOrder to at least this value and recompile."); + if (counts.size() < 2) UTIL_THROW(FormatLoadException, "This ngram implementation assumes at least a bigram model."); + size_t memory_size = VocabularyT::Size(counts[0], config.probing_multiplier); + memory_size += sizeof(ProbBackoff) * (counts[0] + 1); // +1 for hallucinate <unk> + for (unsigned char n = 2; n < counts.size(); ++n) { + memory_size += Middle::Size(counts[n - 1], config.probing_multiplier); + } + memory_size += Longest::Size(counts.back(), config.probing_multiplier); + return memory_size; +} + +template <class Search, class VocabularyT> void GenericModel<Search, VocabularyT>::SetupMemory(char *base, const std::vector<size_t> &counts, const Config &config) { + char *start = base; + size_t allocated = VocabularyT::Size(counts[0], config.probing_multiplier); + vocab_.Init(start, allocated, counts[0]); + start += allocated; + unigram_ = reinterpret_cast<ProbBackoff*>(start); + start += sizeof(ProbBackoff) * (counts[0] + 1); + for (unsigned int n = 2; n < counts.size(); ++n) { + allocated = Middle::Size(counts[n - 1], config.probing_multiplier); + middle_.push_back(Middle(start, allocated)); + start += allocated; + } + allocated = Longest::Size(counts.back(), config.probing_multiplier); + longest_ = Longest(start, allocated); + start += allocated; + if (static_cast<std::size_t>(start - base) != Size(counts, config)) UTIL_THROW(FormatLoadException, "The data structures took " << (start - base) << " but Size says they should take " << Size(counts, config)); +} + +const char kMagicBytes[] = "mmap lm http://kheafield.com/code format version 0\n\0"; +struct BinaryFileHeader { + char magic[sizeof(kMagicBytes)]; + float zero_f, one_f, minus_half_f; + WordIndex one_word_index, max_word_index; + uint64_t one_uint64; + + void SetToReference() { + std::memcpy(magic, kMagicBytes, sizeof(magic)); + zero_f = 0.0; one_f = 1.0; minus_half_f = -0.5; + one_word_index = 1; + max_word_index = std::numeric_limits<WordIndex>::max(); + one_uint64 = 1; + } +}; + +bool IsBinaryFormat(int fd, off_t size) { + if (size == util::kBadSize || (size <= static_cast<off_t>(sizeof(BinaryFileHeader)))) return false; + // Try reading the header. + util::scoped_mmap memory(mmap(NULL, sizeof(BinaryFileHeader), PROT_READ, MAP_FILE | MAP_PRIVATE, fd, 0), sizeof(BinaryFileHeader)); + if (memory.get() == MAP_FAILED) return false; + BinaryFileHeader reference_header = BinaryFileHeader(); + reference_header.SetToReference(); + if (!memcmp(memory.get(), &reference_header, sizeof(BinaryFileHeader))) return true; + if (!memcmp(memory.get(), "mmap lm ", 8)) UTIL_THROW(FormatLoadException, "File looks like it should be loaded with mmap, but the test values don't match. Was it built on a different machine or with a different compiler?"); + return false; +} + +std::size_t Align8(std::size_t in) { + std::size_t off = in % 8; + if (!off) return in; + return in + 8 - off; +} + +std::size_t TotalHeaderSize(unsigned int order) { + return Align8(sizeof(BinaryFileHeader) + 1 /* order */ + sizeof(uint64_t) * order /* counts */ + sizeof(float) /* probing multiplier */ + 1 /* search_tag */); +} + +void ReadBinaryHeader(const void *from, off_t size, std::vector<size_t> &out, float &probing_multiplier, unsigned char &search_tag) { + const char *from_char = reinterpret_cast<const char*>(from); + if (size < static_cast<off_t>(1 + sizeof(BinaryFileHeader))) UTIL_THROW(FormatLoadException, "File too short to have count information."); + // Skip over the BinaryFileHeader which was read by IsBinaryFormat. + from_char += sizeof(BinaryFileHeader); + unsigned char order = *reinterpret_cast<const unsigned char*>(from_char); + if (size < static_cast<off_t>(TotalHeaderSize(order))) UTIL_THROW(FormatLoadException, "File too short to have full header."); + out.resize(static_cast<std::size_t>(order)); + const uint64_t *counts = reinterpret_cast<const uint64_t*>(from_char + 1); + for (std::size_t i = 0; i < out.size(); ++i) { + out[i] = static_cast<std::size_t>(counts[i]); + } + const float *probing_ptr = reinterpret_cast<const float*>(counts + out.size()); + probing_multiplier = *probing_ptr; + search_tag = *reinterpret_cast<const char*>(probing_ptr + 1); +} + +void WriteBinaryHeader(void *to, const std::vector<size_t> &from, float probing_multiplier, char search_tag) { + BinaryFileHeader header = BinaryFileHeader(); + header.SetToReference(); + memcpy(to, &header, sizeof(BinaryFileHeader)); + char *out = reinterpret_cast<char*>(to) + sizeof(BinaryFileHeader); + *reinterpret_cast<unsigned char*>(out) = static_cast<unsigned char>(from.size()); + uint64_t *counts = reinterpret_cast<uint64_t*>(out + 1); + for (std::size_t i = 0; i < from.size(); ++i) { + counts[i] = from[i]; + } + float *probing_ptr = reinterpret_cast<float*>(counts + from.size()); + *probing_ptr = probing_multiplier; + *reinterpret_cast<char*>(probing_ptr + 1) = search_tag; +} + +template <class Search, class VocabularyT> GenericModel<Search, VocabularyT>::GenericModel(const char *file, Config config) : mapped_file_(util::OpenReadOrThrow(file)) { + const off_t file_size = util::SizeFile(mapped_file_.get()); + + std::vector<size_t> counts; + + if (IsBinaryFormat(mapped_file_.get(), file_size)) { + memory_.reset(util::MapForRead(file_size, config.prefault, mapped_file_.get()), file_size); + + unsigned char search_tag; + ReadBinaryHeader(memory_.begin(), file_size, counts, config.probing_multiplier, search_tag); + if (config.probing_multiplier < 1.0) UTIL_THROW(FormatLoadException, "Binary format claims to have a probing multiplier of " << config.probing_multiplier << " which is < 1.0."); + if (search_tag != Search::kBinaryTag) UTIL_THROW(FormatLoadException, "The binary file has a different search strategy than the one requested."); + size_t memory_size = Size(counts, config); + + char *start = reinterpret_cast<char*>(memory_.get()) + TotalHeaderSize(counts.size()); + if (memory_size != static_cast<size_t>(memory_.end() - start)) UTIL_THROW(FormatLoadException, "The mmap file " << file << " has size " << file_size << " but " << (memory_size + TotalHeaderSize(counts.size())) << " was expected based on the number of counts and configuration."); + + SetupMemory(start, counts, config); + vocab_.LoadedBinary(); + for (typename std::vector<Middle>::iterator i = middle_.begin(); i != middle_.end(); ++i) { + i->LoadedBinary(); + } + longest_.LoadedBinary(); + + } else { + if (config.probing_multiplier <= 1.0) UTIL_THROW(FormatLoadException, "probing multiplier must be > 1.0"); + + util::FilePiece f(file, mapped_file_.release(), config.messages); + ReadARPACounts(f, counts); + size_t memory_size = Size(counts, config); + char *start; + + if (config.write_mmap) { + // Write out an mmap file. + util::MapZeroedWrite(config.write_mmap, TotalHeaderSize(counts.size()) + memory_size, mapped_file_, memory_); + WriteBinaryHeader(memory_.get(), counts, config.probing_multiplier, Search::kBinaryTag); + start = reinterpret_cast<char*>(memory_.get()) + TotalHeaderSize(counts.size()); + } else { + memory_.reset(util::MapAnonymous(memory_size), memory_size); + start = reinterpret_cast<char*>(memory_.get()); + } + SetupMemory(start, counts, config); + try { + LoadFromARPA(f, counts, config); + } catch (FormatLoadException &e) { + e << " in file " << file; + throw; + } + } + + // g++ prints warnings unless these are fully initialized. + State begin_sentence = State(); + begin_sentence.valid_length_ = 1; + begin_sentence.history_[0] = vocab_.BeginSentence(); + begin_sentence.backoff_[0] = unigram_[begin_sentence.history_[0]].backoff; + State null_context = State(); + null_context.valid_length_ = 0; + P::Init(begin_sentence, null_context, vocab_, counts.size()); +} + +template <class Search, class VocabularyT> void GenericModel<Search, VocabularyT>::LoadFromARPA(util::FilePiece &f, const std::vector<size_t> &counts, const Config &config) { + // Read the unigrams. + Read1Grams(f, counts[0], vocab_, unigram_); + bool saw_unk = vocab_.FinishedLoading(unigram_); + if (!saw_unk) { + switch(config.unknown_missing) { + case Config::THROW_UP: + { + SpecialWordMissingException e("<unk>"); + e << " and configuration was set to throw if unknown is missing"; + throw e; + } + case Config::COMPLAIN: + if (config.messages) *config.messages << "Language model is missing <unk>. Substituting probability " << config.unknown_missing_prob << "." << std::endl; + // There's no break;. This is by design. + case Config::SILENT: + // Default probabilities for unknown. + unigram_[0].backoff = 0.0; + unigram_[0].prob = config.unknown_missing_prob; + break; + } + } + + // Read the n-grams. + for (unsigned int n = 2; n < counts.size(); ++n) { + ReadNGrams(f, n, counts[n-1], vocab_, middle_[n-2]); + } + ReadNGrams(f, counts.size(), counts[counts.size() - 1], vocab_, longest_); + if (std::fabs(unigram_[0].backoff) > 0.0000001) UTIL_THROW(FormatLoadException, "Backoff for unknown word should be zero, but was given as " << unigram_[0].backoff); +} + +/* Ugly optimized function. + * in_state contains the previous ngram's length and backoff probabilites to + * be used here. out_state is populated with the found ngram length and + * backoffs that the next call will find useful. + * + * The search goes in increasing order of ngram length. + */ +template <class Search, class VocabularyT> FullScoreReturn GenericModel<Search, VocabularyT>::FullScore( + const State &in_state, + const WordIndex new_word, + State &out_state) const { + + FullScoreReturn ret; + // This is end pointer passed to SumBackoffs. + const ProbBackoff &unigram = unigram_[new_word]; + if (new_word == 0) { + ret.ngram_length = out_state.valid_length_ = 0; + // all of backoff. + ret.prob = std::accumulate( + in_state.backoff_, + in_state.backoff_ + in_state.valid_length_, + unigram.prob); + return ret; + } + float *backoff_out(out_state.backoff_); + *backoff_out = unigram.backoff; + ret.prob = unigram.prob; + out_state.history_[0] = new_word; + if (in_state.valid_length_ == 0) { + ret.ngram_length = out_state.valid_length_ = 1; + // No backoff because NGramLength() == 0 and unknown can't have backoff. + return ret; + } + ++backoff_out; + + // Ok now we now that the bigram contains known words. Start by looking it up. + + uint64_t lookup_hash = static_cast<uint64_t>(new_word); + const WordIndex *hist_iter = in_state.history_; + const WordIndex *const hist_end = hist_iter + in_state.valid_length_; + typename std::vector<Middle>::const_iterator mid_iter = middle_.begin(); + for (; ; ++mid_iter, ++hist_iter, ++backoff_out) { + if (hist_iter == hist_end) { + // Used history [in_state.history_, hist_end) and ran out. No backoff. + std::copy(in_state.history_, hist_end, out_state.history_ + 1); + ret.ngram_length = out_state.valid_length_ = in_state.valid_length_ + 1; + // ret.prob was already set. + return ret; + } + lookup_hash = CombineWordHash(lookup_hash, *hist_iter); + if (mid_iter == middle_.end()) break; + typename Middle::ConstIterator found; + if (!mid_iter->Find(lookup_hash, found)) { + // Didn't find an ngram using hist_iter. + // The history used in the found n-gram is [in_state.history_, hist_iter). + std::copy(in_state.history_, hist_iter, out_state.history_ + 1); + // Therefore, we found a (hist_iter - in_state.history_ + 1)-gram including the last word. + ret.ngram_length = out_state.valid_length_ = (hist_iter - in_state.history_) + 1; + ret.prob = std::accumulate( + in_state.backoff_ + (mid_iter - middle_.begin()), + in_state.backoff_ + in_state.valid_length_, + ret.prob); + return ret; + } + *backoff_out = found->GetValue().backoff; + ret.prob = found->GetValue().prob; + } + + typename Longest::ConstIterator found; + if (!longest_.Find(lookup_hash, found)) { + // It's an (P::Order()-1)-gram + std::copy(in_state.history_, in_state.history_ + P::Order() - 2, out_state.history_ + 1); + ret.ngram_length = out_state.valid_length_ = P::Order() - 1; + ret.prob += in_state.backoff_[P::Order() - 2]; + return ret; + } + // It's an P::Order()-gram + // out_state.valid_length_ is still P::Order() - 1 because the next lookup will only need that much. + std::copy(in_state.history_, in_state.history_ + P::Order() - 2, out_state.history_ + 1); + out_state.valid_length_ = P::Order() - 1; + ret.ngram_length = P::Order(); + ret.prob = found->GetValue().prob; + return ret; +} + +template class GenericModel<ProbingSearch, MapVocabulary<ProbingSearch> >; +template class GenericModel<SortedUniformSearch, SortedVocabulary>; +} // namespace detail +} // namespace ngram +} // namespace lm diff --git a/klm/lm/ngram.hh b/klm/lm/ngram.hh new file mode 100644 index 00000000..899a80e8 --- /dev/null +++ b/klm/lm/ngram.hh @@ -0,0 +1,226 @@ +#ifndef LM_NGRAM__ +#define LM_NGRAM__ + +#include "lm/facade.hh" +#include "lm/ngram_config.hh" +#include "util/key_value_packing.hh" +#include "util/mmap.hh" +#include "util/probing_hash_table.hh" +#include "util/scoped.hh" +#include "util/sorted_uniform.hh" +#include "util/string_piece.hh" + +#include <algorithm> +#include <memory> +#include <vector> + +namespace util { class FilePiece; } + +namespace lm { +namespace ngram { + +// If you need higher order, change this and recompile. +// Having this limit means that State can be +// (kMaxOrder - 1) * sizeof(float) bytes instead of +// sizeof(float*) + (kMaxOrder - 1) * sizeof(float) + malloc overhead +const std::size_t kMaxOrder = 6; + +// This is a POD. +class State { + public: + bool operator==(const State &other) const { + if (valid_length_ != other.valid_length_) return false; + const WordIndex *end = history_ + valid_length_; + for (const WordIndex *first = history_, *second = other.history_; + first != end; ++first, ++second) { + if (*first != *second) return false; + } + // If the histories are equal, so are the backoffs. + return true; + } + + // You shouldn't need to touch anything below this line, but the members are public so FullState will qualify as a POD. + // This order minimizes total size of the struct if WordIndex is 64 bit, float is 32 bit, and alignment of 64 bit integers is 64 bit. + WordIndex history_[kMaxOrder - 1]; + float backoff_[kMaxOrder - 1]; + unsigned char valid_length_; +}; + +size_t hash_value(const State &state); + +namespace detail { + +uint64_t HashForVocab(const char *str, std::size_t len); +inline uint64_t HashForVocab(const StringPiece &str) { + return HashForVocab(str.data(), str.length()); +} + +struct Prob { + float prob; + void SetBackoff(float to); + void ZeroBackoff() {} +}; +// No inheritance so this will be a POD. +struct ProbBackoff { + float prob; + float backoff; + void SetBackoff(float to) { backoff = to; } + void ZeroBackoff() { backoff = 0.0; } +}; + +} // namespace detail + +// Vocabulary based on sorted uniform find storing only uint64_t values and using their offsets as indices. +class SortedVocabulary : public base::Vocabulary { + private: + // Sorted uniform requires a GetKey function. + struct Entry { + uint64_t GetKey() const { return key; } + uint64_t key; + bool operator<(const Entry &other) const { + return key < other.key; + } + }; + + public: + SortedVocabulary(); + + WordIndex Index(const StringPiece &str) const { + const Entry *found; + if (util::SortedUniformFind<const Entry *, uint64_t>(begin_, end_, detail::HashForVocab(str), found)) { + return found - begin_ + 1; // +1 because <unk> is 0 and does not appear in the lookup table. + } else { + return 0; + } + } + + // Ignores second argument for consistency with probing hash which has a float here. + static size_t Size(std::size_t entries, float ignored = 0.0); + + // Everything else is for populating. I'm too lazy to hide and friend these, but you'll only get a const reference anyway. + void Init(void *start, std::size_t allocated, std::size_t entries); + + WordIndex Insert(const StringPiece &str); + + // Returns true if unknown was seen. Reorders reorder_vocab so that the IDs are sorted. + bool FinishedLoading(detail::ProbBackoff *reorder_vocab); + + void LoadedBinary(); + + private: + Entry *begin_, *end_; + + bool saw_unk_; +}; + +namespace detail { + +// Vocabulary storing a map from uint64_t to WordIndex. +template <class Search> class MapVocabulary : public base::Vocabulary { + public: + MapVocabulary(); + + WordIndex Index(const StringPiece &str) const { + typename Lookup::ConstIterator i; + return lookup_.Find(HashForVocab(str), i) ? i->GetValue() : 0; + } + + static size_t Size(std::size_t entries, float probing_multiplier) { + return Lookup::Size(entries, probing_multiplier); + } + + // Everything else is for populating. I'm too lazy to hide and friend these, but you'll only get a const reference anyway. + void Init(void *start, std::size_t allocated, std::size_t entries); + + WordIndex Insert(const StringPiece &str); + + // Returns true if unknown was seen. Does nothing with reorder_vocab. + bool FinishedLoading(ProbBackoff *reorder_vocab); + + void LoadedBinary(); + + private: + typedef typename Search::template Table<WordIndex>::T Lookup; + Lookup lookup_; + + bool saw_unk_; +}; + +// std::identity is an SGI extension :-( +struct IdentityHash : public std::unary_function<uint64_t, size_t> { + size_t operator()(uint64_t arg) const { return static_cast<size_t>(arg); } +}; + +// Should return the same results as SRI. +// Why VocabularyT instead of just Vocabulary? ModelFacade defines Vocabulary. +template <class Search, class VocabularyT> class GenericModel : public base::ModelFacade<GenericModel<Search, VocabularyT>, State, VocabularyT> { + private: + typedef base::ModelFacade<GenericModel<Search, VocabularyT>, State, VocabularyT> P; + public: + // Get the size of memory that will be mapped given ngram counts. This + // does not include small non-mapped control structures, such as this class + // itself. + static size_t Size(const std::vector<size_t> &counts, const Config &config = Config()); + + GenericModel(const char *file, Config config = Config()); + + FullScoreReturn FullScore(const State &in_state, const WordIndex new_word, State &out_state) const; + + private: + // Appears after Size in the cc. + void SetupMemory(char *start, const std::vector<size_t> &counts, const Config &config); + + void LoadFromARPA(util::FilePiece &f, const std::vector<size_t> &counts, const Config &config); + + util::scoped_fd mapped_file_; + + // memory_ is the raw block of memory backing vocab_, unigram_, [middle.begin(), middle.end()), and longest_. + util::scoped_mmap memory_; + + VocabularyT vocab_; + + ProbBackoff *unigram_; + + typedef typename Search::template Table<ProbBackoff>::T Middle; + std::vector<Middle> middle_; + + typedef typename Search::template Table<Prob>::T Longest; + Longest longest_; +}; + +struct ProbingSearch { + typedef float Init; + + static const unsigned char kBinaryTag = 1; + + template <class Value> struct Table { + typedef util::ByteAlignedPacking<uint64_t, Value> Packing; + typedef util::ProbingHashTable<Packing, IdentityHash> T; + }; +}; + +struct SortedUniformSearch { + // This is ignored. + typedef float Init; + + static const unsigned char kBinaryTag = 2; + + template <class Value> struct Table { + typedef util::ByteAlignedPacking<uint64_t, Value> Packing; + typedef util::SortedUniformMap<Packing> T; + }; +}; + +} // namespace detail + +// These must also be instantiated in the cc file. +typedef detail::MapVocabulary<detail::ProbingSearch> Vocabulary; +typedef detail::GenericModel<detail::ProbingSearch, Vocabulary> Model; + +// SortedVocabulary was defined above. +typedef detail::GenericModel<detail::SortedUniformSearch, SortedVocabulary> SortedModel; + +} // namespace ngram +} // namespace lm + +#endif // LM_NGRAM__ diff --git a/klm/lm/ngram_build_binary.cc b/klm/lm/ngram_build_binary.cc new file mode 100644 index 00000000..9dab30a1 --- /dev/null +++ b/klm/lm/ngram_build_binary.cc @@ -0,0 +1,13 @@ +#include "lm/ngram.hh" + +#include <iostream> + +int main(int argc, char *argv[]) { + if (argc != 3) { + std::cerr << "Usage: " << argv[0] << " input.arpa output.mmap" << std::endl; + return 1; + } + lm::ngram::Config config; + config.write_mmap = argv[2]; + lm::ngram::Model(argv[1], config); +} diff --git a/klm/lm/ngram_config.hh b/klm/lm/ngram_config.hh new file mode 100644 index 00000000..a7b3afae --- /dev/null +++ b/klm/lm/ngram_config.hh @@ -0,0 +1,58 @@ +#ifndef LM_NGRAM_CONFIG__ +#define LM_NGRAM_CONFIG__ + +/* Configuration for ngram model. Separate header to reduce pollution. */ + +#include <iostream> + +namespace lm { namespace ngram { + +struct Config { + /* EFFECTIVE FOR BOTH ARPA AND BINARY READS */ + // Where to log messages including the progress bar. Set to NULL for + // silence. + std::ostream *messages; + + + + /* ONLY EFFECTIVE WHEN READING ARPA */ + + // What to do when <unk> isn't in the provided model. + typedef enum {THROW_UP, COMPLAIN, SILENT} UnknownMissing; + UnknownMissing unknown_missing; + + // The probability to substitute for <unk> if it's missing from the model. + // No effect if the model has <unk> or unknown_missing == THROW_UP. + float unknown_missing_prob; + + // Size multiplier for probing hash table. Must be > 1. Space is linear in + // this. Time is probing_multiplier / (probing_multiplier - 1). No effect + // for sorted variant. + // If you find yourself setting this to a low number, consider using the + // Sorted version instead which has lower memory consumption. + float probing_multiplier; + + // While loading an ARPA file, also write out this binary format file. Set + // to NULL to disable. + const char *write_mmap; + + + + /* ONLY EFFECTIVE WHEN READING BINARY */ + bool prefault; + + + + // Defaults. + Config() : + messages(&std::cerr), + unknown_missing(COMPLAIN), + unknown_missing_prob(0.0), + probing_multiplier(1.5), + write_mmap(NULL), + prefault(false) {} +}; + +} /* namespace ngram */ } /* namespace lm */ + +#endif // LM_NGRAM_CONFIG__ diff --git a/klm/lm/ngram_query.cc b/klm/lm/ngram_query.cc new file mode 100644 index 00000000..d1970260 --- /dev/null +++ b/klm/lm/ngram_query.cc @@ -0,0 +1,72 @@ +#include "lm/ngram.hh" + +#include <cstdlib> +#include <fstream> +#include <iostream> +#include <string> + +#include <sys/resource.h> +#include <sys/time.h> + +float FloatSec(const struct timeval &tv) { + return static_cast<float>(tv.tv_sec) + (static_cast<float>(tv.tv_usec) / 1000000000.0); +} + +void PrintUsage(const char *message) { + struct rusage usage; + if (getrusage(RUSAGE_SELF, &usage)) { + perror("getrusage"); + return; + } + std::cerr << message; + std::cerr << "user\t" << FloatSec(usage.ru_utime) << "\nsys\t" << FloatSec(usage.ru_stime) << '\n'; + + // Linux doesn't set memory usage :-(. + std::ifstream status("/proc/self/status", std::ios::in); + std::string line; + while (getline(status, line)) { + if (!strncmp(line.c_str(), "VmRSS:\t", 7)) { + std::cerr << "rss " << (line.c_str() + 7) << '\n'; + break; + } + } +} + +template <class Model> void Query(const Model &model) { + PrintUsage("Loading statistics:\n"); + typename Model::State state, out; + lm::FullScoreReturn ret; + std::string word; + + while (std::cin) { + state = model.BeginSentenceState(); + float total = 0.0; + bool got = false; + while (std::cin >> word) { + got = true; + ret = model.FullScore(state, model.GetVocabulary().Index(word), out); + total += ret.prob; + std::cout << word << ' ' << static_cast<unsigned int>(ret.ngram_length) << ' ' << ret.prob << ' '; + state = out; + if (std::cin.get() == '\n') break; + } + if (!got && !std::cin) break; + ret = model.FullScore(state, model.GetVocabulary().EndSentence(), out); + total += ret.prob; + std::cout << "</s> " << static_cast<unsigned int>(ret.ngram_length) << ' ' << ret.prob << ' '; + std::cout << "Total: " << total << '\n'; + } + PrintUsage("After queries:\n"); +} + +int main(int argc, char *argv[]) { + if (argc < 2) { + std::cerr << "Pass language model name." << std::endl; + return 0; + } + { + lm::ngram::Model ngram(argv[1]); + Query(ngram); + } + PrintUsage("Total time including destruction:\n"); +} diff --git a/klm/lm/ngram_test.cc b/klm/lm/ngram_test.cc new file mode 100644 index 00000000..031e0348 --- /dev/null +++ b/klm/lm/ngram_test.cc @@ -0,0 +1,91 @@ +#include "lm/ngram.hh" + +#include <stdlib.h> + +#define BOOST_TEST_MODULE NGramTest +#include <boost/test/unit_test.hpp> + +namespace lm { +namespace ngram { +namespace { + +#define StartTest(word, ngram, score) \ + ret = model.FullScore( \ + state, \ + model.GetVocabulary().Index(word), \ + out);\ + BOOST_CHECK_CLOSE(score, ret.prob, 0.001); \ + BOOST_CHECK_EQUAL(static_cast<unsigned int>(ngram), ret.ngram_length); \ + BOOST_CHECK_EQUAL(std::min<unsigned char>(ngram, 5 - 1), out.valid_length_); + +#define AppendTest(word, ngram, score) \ + StartTest(word, ngram, score) \ + state = out; + +template <class M> void Starters(M &model) { + FullScoreReturn ret; + Model::State state(model.BeginSentenceState()); + Model::State out; + + StartTest("looking", 2, -0.4846522); + + // , probability plus <s> backoff + StartTest(",", 1, -1.383514 + -0.4149733); + // <unk> probability plus <s> backoff + StartTest("this_is_not_found", 0, -1.995635 + -0.4149733); +} + +template <class M> void Continuation(M &model) { + FullScoreReturn ret; + Model::State state(model.BeginSentenceState()); + Model::State out; + + AppendTest("looking", 2, -0.484652); + AppendTest("on", 3, -0.348837); + AppendTest("a", 4, -0.0155266); + AppendTest("little", 5, -0.00306122); + State preserve = state; + AppendTest("the", 1, -4.04005); + AppendTest("biarritz", 1, -1.9889); + AppendTest("not_found", 0, -2.29666); + AppendTest("more", 1, -1.20632); + AppendTest(".", 2, -0.51363); + AppendTest("</s>", 3, -0.0191651); + + state = preserve; + AppendTest("more", 5, -0.00181395); + AppendTest("loin", 5, -0.0432557); +} + +BOOST_AUTO_TEST_CASE(starters_probing) { Model m("test.arpa"); Starters(m); } +BOOST_AUTO_TEST_CASE(continuation_probing) { Model m("test.arpa"); Continuation(m); } +BOOST_AUTO_TEST_CASE(starters_sorted) { SortedModel m("test.arpa"); Starters(m); } +BOOST_AUTO_TEST_CASE(continuation_sorted) { SortedModel m("test.arpa"); Continuation(m); } + +BOOST_AUTO_TEST_CASE(write_and_read_probing) { + Config config; + config.write_mmap = "test.binary"; + { + Model copy_model("test.arpa", config); + } + Model binary("test.binary"); + Starters(binary); + Continuation(binary); +} + +BOOST_AUTO_TEST_CASE(write_and_read_sorted) { + Config config; + config.write_mmap = "test.binary"; + config.prefault = true; + { + SortedModel copy_model("test.arpa", config); + } + SortedModel binary("test.binary"); + Starters(binary); + Continuation(binary); +} + + +} // namespace +} // namespace ngram +} // namespace lm diff --git a/klm/lm/sri.cc b/klm/lm/sri.cc new file mode 100644 index 00000000..7bd23d76 --- /dev/null +++ b/klm/lm/sri.cc @@ -0,0 +1,115 @@ +#include "lm/exception.hh" +#include "lm/sri.hh" + +#include <Ngram.h> +#include <Vocab.h> + +#include <errno.h> + +namespace lm { +namespace sri { + +Vocabulary::Vocabulary() : sri_(new Vocab) {} + +Vocabulary::~Vocabulary() {} + +WordIndex Vocabulary::Index(const char *str) const { + WordIndex ret = sri_->getIndex(str); + // NGram wants the index of Vocab_Unknown for unknown words, but for some reason SRI returns Vocab_None here :-(. + if (ret == Vocab_None) { + return not_found_; + } else { + return ret; + } +} + +const char *Vocabulary::Word(WordIndex index) const { + return sri_->getWord(index); +} + +void Vocabulary::FinishedLoading() { + SetSpecial( + sri_->ssIndex(), + sri_->seIndex(), + sri_->unkIndex(), + sri_->highIndex() + 1); +} + +namespace { +Ngram *MakeSRIModel(const char *file_name, unsigned int ngram_length, Vocab &sri_vocab) { + sri_vocab.unkIsWord() = true; + std::auto_ptr<Ngram> ret(new Ngram(sri_vocab, ngram_length)); + File file(file_name, "r"); + errno = 0; + if (!ret->read(file)) { + UTIL_THROW(FormatLoadException, "reading file " << file_name << " with SRI failed."); + } + return ret.release(); +} +} // namespace + +Model::Model(const char *file_name, unsigned int ngram_length) : sri_(MakeSRIModel(file_name, ngram_length, *vocab_.sri_)) { + if (!sri_->setorder()) { + UTIL_THROW(FormatLoadException, "Can't have an SRI model with order 0."); + } + vocab_.FinishedLoading(); + State begin_state = State(); + begin_state.valid_length_ = 1; + if (kMaxOrder > 1) { + begin_state.history_[0] = vocab_.BeginSentence(); + if (kMaxOrder > 2) begin_state.history_[1] = Vocab_None; + } + State null_state = State(); + null_state.valid_length_ = 0; + if (kMaxOrder > 1) null_state.history_[0] = Vocab_None; + Init(begin_state, null_state, vocab_, sri_->setorder()); + not_found_ = vocab_.NotFound(); +} + +Model::~Model() {} + +namespace { + +/* Argh SRI's wordProb knows the ngram length but doesn't return it. One more + * reason you should use my model. */ +// TODO(stolcke): fix SRILM so I don't have to do this. +unsigned int MatchedLength(Ngram &model, const WordIndex new_word, const SRIVocabIndex *const_history) { + unsigned int out_length = 0; + // This gets the length of context used, which is ngram_length - 1 unless new_word is OOV in which case it is 0. + model.contextID(new_word, const_history, out_length); + return out_length + 1; +} + +} // namespace + +FullScoreReturn Model::FullScore(const State &in_state, const WordIndex new_word, State &out_state) const { + // If you get a compiler in this function, change SRIVocabIndex in sri.hh to match the one found in SRI's Vocab.h. + const SRIVocabIndex *const_history; + SRIVocabIndex local_history[Order()]; + if (in_state.valid_length_ < kMaxOrder - 1) { + const_history = in_state.history_; + } else { + std::copy(in_state.history_, in_state.history_ + in_state.valid_length_, local_history); + local_history[in_state.valid_length_] = Vocab_None; + const_history = local_history; + } + FullScoreReturn ret; + if (new_word != not_found_) { + ret.ngram_length = MatchedLength(*sri_, new_word, const_history); + out_state.history_[0] = new_word; + out_state.valid_length_ = std::min<unsigned char>(ret.ngram_length, Order() - 1); + std::copy(const_history, const_history + out_state.valid_length_ - 1, out_state.history_ + 1); + if (out_state.valid_length_ < kMaxOrder - 1) { + out_state.history_[out_state.valid_length_] = Vocab_None; + } + } else { + ret.ngram_length = 0; + if (kMaxOrder > 1) out_state.history_[0] = Vocab_None; + out_state.valid_length_ = 0; + } + ret.prob = sri_->wordProb(new_word, const_history); + return ret; +} + +} // namespace sri +} // namespace lm diff --git a/klm/lm/sri.hh b/klm/lm/sri.hh new file mode 100644 index 00000000..b57e9b73 --- /dev/null +++ b/klm/lm/sri.hh @@ -0,0 +1,102 @@ +#ifndef LM_SRI__ +#define LM_SRI__ + +#include "lm/facade.hh" +#include "util/murmur_hash.hh" + +#include <cmath> +#include <exception> +#include <memory> + +class Ngram; +class Vocab; + +/* The ngram length reported uses some random API I found and may be wrong. + * + * See ngram, which should return equivalent results. + */ + +namespace lm { +namespace sri { + +static const unsigned int kMaxOrder = 6; + +/* This should match VocabIndex found in SRI's Vocab.h + * The reason I define this here independently is that SRI's headers + * pollute and increase compile time. + * It's difficult to extract this from their header and anyway would + * break packaging. + * If these differ there will be a compiler error in ActuallyCall. + */ +typedef unsigned int SRIVocabIndex; + +class State { + public: + // You shouldn't need to touch these, but they're public so State will be a POD. + // If valid_length_ < kMaxOrder - 1 then history_[valid_length_] == Vocab_None. + SRIVocabIndex history_[kMaxOrder - 1]; + unsigned char valid_length_; +}; + +inline bool operator==(const State &left, const State &right) { + if (left.valid_length_ != right.valid_length_) { + return false; + } + for (const SRIVocabIndex *l = left.history_, *r = right.history_; + l != left.history_ + left.valid_length_; + ++l, ++r) { + if (*l != *r) return false; + } + return true; +} + +inline size_t hash_value(const State &state) { + return util::MurmurHashNative(&state.history_, sizeof(SRIVocabIndex) * state.valid_length_); +} + +class Vocabulary : public base::Vocabulary { + public: + Vocabulary(); + + ~Vocabulary(); + + WordIndex Index(const StringPiece &str) const { + std::string temp(str.data(), str.length()); + return Index(temp.c_str()); + } + WordIndex Index(const std::string &str) const { + return Index(str.c_str()); + } + WordIndex Index(const char *str) const; + + const char *Word(WordIndex index) const; + + private: + friend class Model; + void FinishedLoading(); + + // The parent class isn't copyable so auto_ptr is the same as scoped_ptr + // but without the boost dependence. + mutable std::auto_ptr<Vocab> sri_; +}; + +class Model : public base::ModelFacade<Model, State, Vocabulary> { + public: + Model(const char *file_name, unsigned int ngram_length); + + ~Model(); + + FullScoreReturn FullScore(const State &in_state, const WordIndex new_word, State &out_state) const; + + private: + Vocabulary vocab_; + + mutable std::auto_ptr<Ngram> sri_; + + WordIndex not_found_; +}; + +} // namespace sri +} // namespace lm + +#endif // LM_SRI__ diff --git a/klm/lm/sri_test.cc b/klm/lm/sri_test.cc new file mode 100644 index 00000000..e697d722 --- /dev/null +++ b/klm/lm/sri_test.cc @@ -0,0 +1,65 @@ +#include "lm/sri.hh" + +#include <stdlib.h> + +#define BOOST_TEST_MODULE SRITest +#include <boost/test/unit_test.hpp> + +namespace lm { +namespace sri { +namespace { + +#define StartTest(word, ngram, score) \ + ret = model.FullScore( \ + state, \ + model.GetVocabulary().Index(word), \ + out);\ + BOOST_CHECK_CLOSE(score, ret.prob, 0.001); \ + BOOST_CHECK_EQUAL(static_cast<unsigned int>(ngram), ret.ngram_length); \ + BOOST_CHECK_EQUAL(std::min<unsigned char>(ngram, 5 - 1), out.valid_length_); + +#define AppendTest(word, ngram, score) \ + StartTest(word, ngram, score) \ + state = out; + +template <class M> void Starters(M &model) { + FullScoreReturn ret; + Model::State state(model.BeginSentenceState()); + Model::State out; + + StartTest("looking", 2, -0.4846522); + + // , probability plus <s> backoff + StartTest(",", 1, -1.383514 + -0.4149733); + // <unk> probability plus <s> backoff + StartTest("this_is_not_found", 0, -1.995635 + -0.4149733); +} + +template <class M> void Continuation(M &model) { + FullScoreReturn ret; + Model::State state(model.BeginSentenceState()); + Model::State out; + + AppendTest("looking", 2, -0.484652); + AppendTest("on", 3, -0.348837); + AppendTest("a", 4, -0.0155266); + AppendTest("little", 5, -0.00306122); + State preserve = state; + AppendTest("the", 1, -4.04005); + AppendTest("biarritz", 1, -1.9889); + AppendTest("not_found", 0, -2.29666); + AppendTest("more", 1, -1.20632); + AppendTest(".", 2, -0.51363); + AppendTest("</s>", 3, -0.0191651); + + state = preserve; + AppendTest("more", 5, -0.00181395); + AppendTest("loin", 5, -0.0432557); +} + +BOOST_AUTO_TEST_CASE(starters) { Model m("test.arpa", 5); Starters(m); } +BOOST_AUTO_TEST_CASE(continuation) { Model m("test.arpa", 5); Continuation(m); } + +} // namespace +} // namespace sri +} // namespace lm diff --git a/klm/lm/test.arpa b/klm/lm/test.arpa new file mode 100644 index 00000000..9d674e83 --- /dev/null +++ b/klm/lm/test.arpa @@ -0,0 +1,112 @@ + +\data\ +ngram 1=34 +ngram 2=43 +ngram 3=8 +ngram 4=5 +ngram 5=3 + +\1-grams: +-1.383514 , -0.30103 +-1.139057 . -0.845098 +-1.029493 </s> +-99 <s> -0.4149733 +-1.995635 <unk> +-1.285941 a -0.69897 +-1.687872 also -0.30103 +-1.687872 beyond -0.30103 +-1.687872 biarritz -0.30103 +-1.687872 call -0.30103 +-1.687872 concerns -0.30103 +-1.687872 consider -0.30103 +-1.687872 considering -0.30103 +-1.687872 for -0.30103 +-1.509559 higher -0.30103 +-1.687872 however -0.30103 +-1.687872 i -0.30103 +-1.687872 immediate -0.30103 +-1.687872 in -0.30103 +-1.687872 is -0.30103 +-1.285941 little -0.69897 +-1.383514 loin -0.30103 +-1.687872 look -0.30103 +-1.285941 looking -0.4771212 +-1.206319 more -0.544068 +-1.509559 on -0.4771212 +-1.509559 screening -0.4771212 +-1.687872 small -0.30103 +-1.687872 the -0.30103 +-1.687872 to -0.30103 +-1.687872 watch -0.30103 +-1.687872 watching -0.30103 +-1.687872 what -0.30103 +-1.687872 would -0.30103 + +\2-grams: +-0.6925742 , . +-0.7522095 , however +-0.7522095 , is +-0.0602359 . </s> +-0.4846522 <s> looking -0.4771214 +-1.051485 <s> screening +-1.07153 <s> the +-1.07153 <s> watching +-1.07153 <s> what +-0.09132547 a little -0.69897 +-0.2922095 also call +-0.2922095 beyond immediate +-0.2705918 biarritz . +-0.2922095 call for +-0.2922095 concerns in +-0.2922095 consider watch +-0.2922095 considering consider +-0.2834328 for , +-0.5511513 higher more +-0.5845945 higher small +-0.2834328 however , +-0.2922095 i would +-0.2922095 immediate concerns +-0.2922095 in biarritz +-0.2922095 is to +-0.09021038 little more -0.1998621 +-0.7273645 loin , +-0.6925742 loin . +-0.6708385 loin </s> +-0.2922095 look beyond +-0.4638903 looking higher +-0.4638903 looking on -0.4771212 +-0.5136299 more . -0.4771212 +-0.3561665 more loin +-0.1649931 on a -0.4771213 +-0.1649931 screening a -0.4771213 +-0.2705918 small . +-0.287799 the screening +-0.2922095 to look +-0.2622373 watch </s> +-0.2922095 watching considering +-0.2922095 what i +-0.2922095 would also + +\3-grams: +-0.01916512 more . </s> +-0.0283603 on a little -0.4771212 +-0.0283603 screening a little -0.4771212 +-0.01660496 a little more -0.09409451 +-0.3488368 <s> looking higher +-0.3488368 <s> looking on -0.4771212 +-0.1892331 little more loin +-0.04835128 looking on a -0.4771212 + +\4-grams: +-0.009249173 looking on a little -0.4771212 +-0.005464747 on a little more -0.4771212 +-0.005464747 screening a little more +-0.1453306 a little more loin +-0.01552657 <s> looking on a -0.4771212 + +\5-grams: +-0.003061223 <s> looking on a little +-0.001813953 looking on a little more +-0.0432557 on a little more loin + +\end\ diff --git a/klm/lm/test.binary b/klm/lm/test.binary Binary files differnew file mode 100644 index 00000000..90bd2b76 --- /dev/null +++ b/klm/lm/test.binary diff --git a/klm/lm/virtual_interface.cc b/klm/lm/virtual_interface.cc new file mode 100644 index 00000000..9c7151f9 --- /dev/null +++ b/klm/lm/virtual_interface.cc @@ -0,0 +1,22 @@ +#include "lm/virtual_interface.hh" + +#include "lm/exception.hh" + +namespace lm { +namespace base { + +Vocabulary::~Vocabulary() {} + +void Vocabulary::SetSpecial(WordIndex begin_sentence, WordIndex end_sentence, WordIndex not_found, WordIndex available) { + begin_sentence_ = begin_sentence; + end_sentence_ = end_sentence; + not_found_ = not_found; + available_ = available; + if (begin_sentence_ == not_found_) throw SpecialWordMissingException("<s>"); + if (end_sentence_ == not_found_) throw SpecialWordMissingException("</s>"); +} + +Model::~Model() {} + +} // namespace base +} // namespace lm diff --git a/klm/lm/virtual_interface.hh b/klm/lm/virtual_interface.hh new file mode 100644 index 00000000..621a129e --- /dev/null +++ b/klm/lm/virtual_interface.hh @@ -0,0 +1,156 @@ +#ifndef LM_VIRTUAL_INTERFACE__ +#define LM_VIRTUAL_INTERFACE__ + +#include "lm/word_index.hh" +#include "util/string_piece.hh" + +#include <string> + +namespace lm { + +struct FullScoreReturn { + float prob; + unsigned char ngram_length; +}; + +namespace base { + +template <class T, class U, class V> class ModelFacade; + +/* Vocabulary interface. Call Index(string) and get a word index for use in + * calling Model. It provides faster convenience functions for <s>, </s>, and + * <unk> although you can also find these using Index. + * + * Some models do not load the mapping from index to string. If you need this, + * check if the model Vocabulary class implements such a function and access it + * directly. + * + * The Vocabulary object is always owned by the Model and can be retrieved from + * the Model using BaseVocabulary() for this abstract interface or + * GetVocabulary() for the actual implementation (in which case you'll need the + * actual implementation of the Model too). + */ +class Vocabulary { + public: + virtual ~Vocabulary(); + + WordIndex BeginSentence() const { return begin_sentence_; } + WordIndex EndSentence() const { return end_sentence_; } + WordIndex NotFound() const { return not_found_; } + // FullScoreReturn start index of unused word assignments. + WordIndex Available() const { return available_; } + + /* Most implementations allow StringPiece lookups and need only override + * Index(StringPiece). SRI requires null termination and overrides all + * three methods. + */ + virtual WordIndex Index(const StringPiece &str) const = 0; + virtual WordIndex Index(const std::string &str) const { + return Index(StringPiece(str)); + } + virtual WordIndex Index(const char *str) const { + return Index(StringPiece(str)); + } + + protected: + // Call SetSpecial afterward. + Vocabulary() {} + + Vocabulary(WordIndex begin_sentence, WordIndex end_sentence, WordIndex not_found, WordIndex available) { + SetSpecial(begin_sentence, end_sentence, not_found, available); + } + + void SetSpecial(WordIndex begin_sentence, WordIndex end_sentence, WordIndex not_found, WordIndex available); + + WordIndex begin_sentence_, end_sentence_, not_found_, available_; + + private: + // Disable copy constructors. They're private and undefined. + // Ersatz boost::noncopyable. + Vocabulary(const Vocabulary &); + Vocabulary &operator=(const Vocabulary &); +}; + +/* There are two ways to access a Model. + * + * + * OPTION 1: Access the Model directly (e.g. lm::ngram::Model in ngram.hh). + * Every Model implements the scoring function: + * float Score( + * const Model::State &in_state, + * const WordIndex new_word, + * Model::State &out_state) const; + * + * It can also return the length of n-gram matched by the model: + * FullScoreReturn FullScore( + * const Model::State &in_state, + * const WordIndex new_word, + * Model::State &out_state) const; + * + * There are also accessor functions: + * const State &BeginSentenceState() const; + * const State &NullContextState() const; + * const Vocabulary &GetVocabulary() const; + * unsigned int Order() const; + * + * NB: In case you're wondering why the model implementation looks like it's + * missing these methods, see facade.hh. + * + * This is the fastest way to use a model and presents a normal State class to + * be included in hypothesis state structure. + * + * + * OPTION 2: Use the virtual interface below. + * + * The virtual interface allow you to decide which Model to use at runtime + * without templatizing everything on the Model type. However, each Model has + * its own State class, so a single State cannot be efficiently provided (it + * would require using the maximum memory of any Model's State or memory + * allocation with each lookup). This means you become responsible for + * allocating memory with size StateSize() and passing it to the Score or + * FullScore functions provided here. + * + * For example, cdec has a std::string containing the entire state of a + * hypothesis. It can reserve StateSize bytes in this string for the model + * state. + * + * All the State objects are POD, so it's ok to use raw memory for storing + * State. + */ +class Model { + public: + virtual ~Model(); + + size_t StateSize() const { return state_size_; } + const void *BeginSentenceMemory() const { return begin_sentence_memory_; } + const void *NullContextMemory() const { return null_context_memory_; } + + virtual float Score(const void *in_state, const WordIndex new_word, void *out_state) const = 0; + + virtual FullScoreReturn FullScore(const void *in_state, const WordIndex new_word, void *out_state) const = 0; + + unsigned char Order() const { return order_; } + + const Vocabulary &BaseVocabulary() const { return *base_vocab_; } + + private: + template <class T, class U, class V> friend class ModelFacade; + explicit Model(size_t state_size) : state_size_(state_size) {} + + const size_t state_size_; + const void *begin_sentence_memory_, *null_context_memory_; + + const Vocabulary *base_vocab_; + + unsigned char order_; + + // Disable copy constructors. They're private and undefined. + // Ersatz boost::noncopyable. + Model(const Model &); + Model &operator=(const Model &); +}; + +} // mamespace base +} // namespace lm + +#endif // LM_VIRTUAL_INTERFACE__ diff --git a/klm/lm/word_index.hh b/klm/lm/word_index.hh new file mode 100644 index 00000000..67841c30 --- /dev/null +++ b/klm/lm/word_index.hh @@ -0,0 +1,11 @@ +// Separate header because this is used often. +#ifndef LM_WORD_INDEX__ +#define LM_WORD_INDEX__ + +namespace lm { +typedef unsigned int WordIndex; +} // namespace lm + +typedef lm::WordIndex LMWordIndex; + +#endif diff --git a/klm/test.sh b/klm/test.sh new file mode 100755 index 00000000..b741cdf0 --- /dev/null +++ b/klm/test.sh @@ -0,0 +1,8 @@ +#!/bin/bash +#Run tests. Requires Boost. +set -e +./compile.sh +for i in util/{file_piece,joint_sort,key_value_packing,probing_hash_table,sorted_uniform}_test lm/ngram_test; do + g++ -I. -O3 $i.cc {lm,util}/*.o -lboost_test_exec_monitor -o $i + pushd $(dirname $i) && ./$(basename $i); popd +done diff --git a/klm/util/Makefile.am b/klm/util/Makefile.am new file mode 100644 index 00000000..d3aea6b7 --- /dev/null +++ b/klm/util/Makefile.am @@ -0,0 +1,18 @@ +if HAVE_GTEST +noinst_PROGRAMS = \ + scorer_test +TESTS = scorer_test +endif + +noinst_LIBRARIES = libklm_util.a + +libklm_util_a_SOURCES = \ + ersatz_progress.cc \ + exception.cc \ + file_piece.cc \ + mmap.cc \ + murmur_hash.cc \ + scoped.cc \ + string_piece.cc + +AM_CPPFLAGS = -W -Wall -Wno-sign-compare $(GTEST_CPPFLAGS) -I.. diff --git a/klm/util/ersatz_progress.cc b/klm/util/ersatz_progress.cc new file mode 100644 index 00000000..09e3a106 --- /dev/null +++ b/klm/util/ersatz_progress.cc @@ -0,0 +1,47 @@ +#include "util/ersatz_progress.hh" + +#include <algorithm> +#include <ostream> +#include <limits> +#include <string> + +namespace util { + +namespace { const unsigned char kWidth = 100; } + +ErsatzProgress::ErsatzProgress() : current_(0), next_(std::numeric_limits<std::size_t>::max()), complete_(next_), out_(NULL) {} + +ErsatzProgress::~ErsatzProgress() { + if (!out_) return; + for (; stones_written_ < kWidth; ++stones_written_) { + (*out_) << '*'; + } + *out_ << '\n'; +} + +ErsatzProgress::ErsatzProgress(std::ostream *to, const std::string &message, std::size_t complete) + : current_(0), next_(complete / kWidth), complete_(complete), stones_written_(0), out_(to) { + if (!out_) { + next_ = std::numeric_limits<std::size_t>::max(); + return; + } + *out_ << message << "\n----5---10---15---20---25---30---35---40---45---50---55---60---65---70---75---80---85---90---95--100\n"; +} + +void ErsatzProgress::Milestone() { + if (!out_) { current_ = 0; return; } + if (!complete_) return; + unsigned char stone = std::min(static_cast<std::size_t>(kWidth), (current_ * kWidth) / complete_); + + for (; stones_written_ < stone; ++stones_written_) { + (*out_) << '*'; + } + + if (current_ >= complete_) { + next_ = std::numeric_limits<std::size_t>::max(); + } else { + next_ = std::max(next_, (stone * complete_) / kWidth); + } +} + +} // namespace util diff --git a/klm/util/ersatz_progress.hh b/klm/util/ersatz_progress.hh new file mode 100644 index 00000000..ea6c3bb9 --- /dev/null +++ b/klm/util/ersatz_progress.hh @@ -0,0 +1,50 @@ +#ifndef UTIL_ERSATZ_PROGRESS__ +#define UTIL_ERSATZ_PROGRESS__ + +#include <iosfwd> +#include <string> + +// Ersatz version of boost::progress so core language model doesn't depend on +// boost. Also adds option to print nothing. + +namespace util { +class ErsatzProgress { + public: + // No output. + ErsatzProgress(); + + // Null means no output. The null value is useful for passing along the ostream pointer from another caller. + ErsatzProgress(std::ostream *to, const std::string &message, std::size_t complete); + + ~ErsatzProgress(); + + ErsatzProgress &operator++() { + if (++current_ == next_) Milestone(); + return *this; + } + + ErsatzProgress &operator+=(std::size_t amount) { + if ((current_ += amount) >= next_) Milestone(); + return *this; + } + + void Set(std::size_t to) { + if ((current_ = to) >= next_) Milestone(); + Milestone(); + } + + private: + void Milestone(); + + std::size_t current_, next_, complete_; + unsigned char stones_written_; + std::ostream *out_; + + // noncopyable + ErsatzProgress(const ErsatzProgress &other); + ErsatzProgress &operator=(const ErsatzProgress &other); +}; + +} // namespace util + +#endif // UTIL_ERSATZ_PROGRESS__ diff --git a/klm/util/exception.cc b/klm/util/exception.cc new file mode 100644 index 00000000..dd337a76 --- /dev/null +++ b/klm/util/exception.cc @@ -0,0 +1,35 @@ +#include "util/exception.hh" + +#include <errno.h> +#include <string.h> + +namespace util { + +Exception::Exception() throw() {} +Exception::~Exception() throw() {} + +namespace { +// The XOPEN version. +const char *HandleStrerror(int ret, const char *buf) { + if (!ret) return buf; + return NULL; +} + +// The GNU version. +const char *HandleStrerror(const char *ret, const char *buf) { + return ret; +} +} // namespace + +ErrnoException::ErrnoException() throw() : errno_(errno) { + char buf[200]; + buf[0] = 0; + const char *add = HandleStrerror(strerror_r(errno, buf, 200), buf); + if (add) { + *this << add << ' '; + } +} + +ErrnoException::~ErrnoException() throw() {} + +} // namespace util diff --git a/klm/util/exception.hh b/klm/util/exception.hh new file mode 100644 index 00000000..124689cf --- /dev/null +++ b/klm/util/exception.hh @@ -0,0 +1,72 @@ +#ifndef UTIL_EXCEPTION__ +#define UTIL_EXCEPTION__ + +#include "util/string_piece.hh" + +#include <exception> +#include <sstream> +#include <string> + +namespace util { + +class Exception : public std::exception { + public: + Exception() throw(); + virtual ~Exception() throw(); + + const char *what() const throw() { return what_.c_str(); } + + // This helps restrict operator<< defined below. + template <class T> struct ExceptionTag { + typedef T Identity; + }; + + std::string &Str() { + return what_; + } + + protected: + std::string what_; +}; + +/* This implements the normal operator<< for Exception and all its children. + * SNIFAE means it only applies to Exception. Think of this as an ersatz + * boost::enable_if. + */ +template <class Except, class Data> typename Except::template ExceptionTag<Except&>::Identity operator<<(Except &e, const Data &data) { + // Argh I had a stringstream in the exception, but the only way to get the string is by calling str(). But that's a temporary string, so virtual const char *what() const can't actually return it. + std::stringstream stream; + stream << data; + e.Str() += stream.str(); + return e; +} +template <class Except> typename Except::template ExceptionTag<Except&>::Identity operator<<(Except &e, const char *data) { + e.Str() += data; + return e; +} +template <class Except> typename Except::template ExceptionTag<Except&>::Identity operator<<(Except &e, const std::string &data) { + e.Str() += data; + return e; +} +template <class Except> typename Except::template ExceptionTag<Except&>::Identity operator<<(Except &e, const StringPiece &str) { + e.Str().append(str.data(), str.length()); + return e; +} + +#define UTIL_THROW(Exception, Modify) { Exception UTIL_e; {UTIL_e << Modify;} throw UTIL_e; } + +class ErrnoException : public Exception { + public: + ErrnoException() throw(); + + virtual ~ErrnoException() throw(); + + int Error() { return errno_; } + + private: + int errno_; +}; + +} // namespace util + +#endif // UTIL_EXCEPTION__ diff --git a/klm/util/file_piece.cc b/klm/util/file_piece.cc new file mode 100644 index 00000000..2b439499 --- /dev/null +++ b/klm/util/file_piece.cc @@ -0,0 +1,224 @@ +#include "util/file_piece.hh" + +#include "util/exception.hh" + +#include <iostream> +#include <string> +#include <limits> + +#include <assert.h> +#include <cstdlib> +#include <ctype.h> +#include <fcntl.h> +#include <sys/mman.h> +#include <sys/types.h> +#include <sys/stat.h> +#include <unistd.h> + +namespace util { + +EndOfFileException::EndOfFileException() throw() { + *this << "End of file"; +} +EndOfFileException::~EndOfFileException() throw() {} + +ParseNumberException::ParseNumberException(StringPiece value) throw() { + *this << "Could not parse \"" << value << "\" into a float"; +} + +int OpenReadOrThrow(const char *name) { + int ret = open(name, O_RDONLY); + if (ret == -1) UTIL_THROW(ErrnoException, "in open (" << name << ") for reading"); + return ret; +} + +off_t SizeFile(int fd) { + struct stat sb; + if (fstat(fd, &sb) == -1 || (!sb.st_size && !S_ISREG(sb.st_mode))) return kBadSize; + return sb.st_size; +} + +FilePiece::FilePiece(const char *name, std::ostream *show_progress, off_t min_buffer) : + file_(OpenReadOrThrow(name)), total_size_(SizeFile(file_.get())), page_(sysconf(_SC_PAGE_SIZE)), + progress_(total_size_ == kBadSize ? NULL : show_progress, std::string("Reading ") + name, total_size_) { + Initialize(name, show_progress, min_buffer); +} + +FilePiece::FilePiece(const char *name, int fd, std::ostream *show_progress, off_t min_buffer) : + file_(fd), total_size_(SizeFile(file_.get())), page_(sysconf(_SC_PAGE_SIZE)), + progress_(total_size_ == kBadSize ? NULL : show_progress, std::string("Reading ") + name, total_size_) { + Initialize(name, show_progress, min_buffer); +} + +void FilePiece::Initialize(const char *name, std::ostream *show_progress, off_t min_buffer) { + if (total_size_ == kBadSize) { + fallback_to_read_ = true; + if (show_progress) + *show_progress << "File " << name << " isn't normal. Using slower read() instead of mmap(). No progress bar." << std::endl; + } else { + fallback_to_read_ = false; + } + default_map_size_ = page_ * std::max<off_t>((min_buffer / page_ + 1), 2); + position_ = NULL; + position_end_ = NULL; + mapped_offset_ = 0; + at_end_ = false; + Shift(); +} + +float FilePiece::ReadFloat() throw(EndOfFileException, ParseNumberException) { + SkipSpaces(); + while (last_space_ < position_) { + if (at_end_) { + // Hallucinate a null off the end of the file. + std::string buffer(position_, position_end_); + char *end; + float ret = std::strtof(buffer.c_str(), &end); + if (buffer.c_str() == end) throw ParseNumberException(buffer); + position_ += end - buffer.c_str(); + return ret; + } + Shift(); + } + char *end; + float ret = std::strtof(position_, &end); + if (end == position_) throw ParseNumberException(ReadDelimited()); + position_ = end; + return ret; +} + +void FilePiece::SkipSpaces() throw (EndOfFileException) { + for (; ; ++position_) { + if (position_ == position_end_) Shift(); + if (!isspace(*position_)) return; + } +} + +const char *FilePiece::FindDelimiterOrEOF() throw (EndOfFileException) { + for (const char *i = position_; i <= last_space_; ++i) { + if (isspace(*i)) return i; + } + while (!at_end_) { + size_t skip = position_end_ - position_; + Shift(); + for (const char *i = position_ + skip; i <= last_space_; ++i) { + if (isspace(*i)) return i; + } + } + return position_end_; +} + +StringPiece FilePiece::ReadLine(char delim) throw (EndOfFileException) { + const char *start = position_; + do { + for (const char *i = start; i < position_end_; ++i) { + if (*i == delim) { + StringPiece ret(position_, i - position_); + position_ = i + 1; + return ret; + } + } + size_t skip = position_end_ - position_; + Shift(); + start = position_ + skip; + } while (!at_end_); + StringPiece ret(position_, position_end_ - position_); + position_ = position_end_; + return position_; +} + +void FilePiece::Shift() throw(EndOfFileException) { + if (at_end_) throw EndOfFileException(); + off_t desired_begin = position_ - data_.begin() + mapped_offset_; + progress_.Set(desired_begin); + + if (!fallback_to_read_) MMapShift(desired_begin); + // Notice an mmap failure might set the fallback. + if (fallback_to_read_) ReadShift(desired_begin); + + for (last_space_ = position_end_ - 1; last_space_ >= position_; --last_space_) { + if (isspace(*last_space_)) break; + } +} + +void FilePiece::MMapShift(off_t desired_begin) throw() { + // Use mmap. + off_t ignore = desired_begin % page_; + // Duplicate request for Shift means give more data. + if (position_ == data_.begin() + ignore) { + default_map_size_ *= 2; + } + // Local version so that in case of failure it doesn't overwrite the class variable. + off_t mapped_offset = desired_begin - ignore; + + off_t mapped_size; + if (default_map_size_ >= static_cast<size_t>(total_size_ - mapped_offset)) { + at_end_ = true; + mapped_size = total_size_ - mapped_offset; + } else { + mapped_size = default_map_size_; + } + + // Forcibly clear the existing mmap first. + data_.reset(); + data_.reset(mmap(NULL, mapped_size, PROT_READ, MAP_PRIVATE, *file_, mapped_offset), mapped_size, scoped_memory::MMAP_ALLOCATED); + if (data_.get() == MAP_FAILED) { + fallback_to_read_ = true; + if (desired_begin) { + if (((off_t)-1) == lseek(*file_, desired_begin, SEEK_SET)) UTIL_THROW(ErrnoException, "mmap failed even though it worked before. lseek failed too, so using read isn't an option either."); + } + return; + } + mapped_offset_ = mapped_offset; + position_ = data_.begin() + ignore; + position_end_ = data_.begin() + mapped_size; +} + +void FilePiece::ReadShift(off_t desired_begin) throw() { + assert(fallback_to_read_); + if (data_.source() != scoped_memory::MALLOC_ALLOCATED) { + // First call. + data_.reset(); + data_.reset(malloc(default_map_size_), default_map_size_, scoped_memory::MALLOC_ALLOCATED); + if (!data_.get()) UTIL_THROW(ErrnoException, "malloc failed for " << default_map_size_); + position_ = data_.begin(); + position_end_ = position_; + } + + // Bytes [data_.begin(), position_) have been consumed. + // Bytes [position_, position_end_) have been read into the buffer. + + // Start at the beginning of the buffer if there's nothing useful in it. + if (position_ == position_end_) { + mapped_offset_ += (position_end_ - data_.begin()); + position_ = data_.begin(); + position_end_ = position_; + } + + std::size_t already_read = position_end_ - data_.begin(); + + if (already_read == default_map_size_) { + if (position_ == data_.begin()) { + // Buffer too small. + std::size_t valid_length = position_end_ - position_; + default_map_size_ *= 2; + data_.call_realloc(default_map_size_); + if (!data_.get()) UTIL_THROW(ErrnoException, "realloc failed for " << default_map_size_); + position_ = data_.begin(); + position_end_ = position_ + valid_length; + } else { + size_t moving = position_end_ - position_; + memmove(data_.get(), position_, moving); + position_ = data_.begin(); + position_end_ = position_ + moving; + already_read = moving; + } + } + + ssize_t read_return = read(file_.get(), static_cast<char*>(data_.get()) + already_read, default_map_size_ - already_read); + if (read_return == -1) UTIL_THROW(ErrnoException, "read failed"); + if (read_return == 0) at_end_ = true; + position_end_ += read_return; +} + +} // namespace util diff --git a/klm/util/file_piece.hh b/klm/util/file_piece.hh new file mode 100644 index 00000000..704f0ac6 --- /dev/null +++ b/klm/util/file_piece.hh @@ -0,0 +1,105 @@ +#ifndef UTIL_FILE_PIECE__ +#define UTIL_FILE_PIECE__ + +#include "util/ersatz_progress.hh" +#include "util/exception.hh" +#include "util/mmap.hh" +#include "util/scoped.hh" +#include "util/string_piece.hh" + +#include <string> + +#include <cstddef> + +namespace util { + +class EndOfFileException : public Exception { + public: + EndOfFileException() throw(); + ~EndOfFileException() throw(); +}; + +class ParseNumberException : public Exception { + public: + explicit ParseNumberException(StringPiece value) throw(); + ~ParseNumberException() throw() {} +}; + +int OpenReadOrThrow(const char *name); + +// Return value for SizeFile when it can't size properly. +const off_t kBadSize = -1; +off_t SizeFile(int fd); + +class FilePiece { + public: + // 32 MB default. + explicit FilePiece(const char *file, std::ostream *show_progress = NULL, off_t min_buffer = 33554432); + // Takes ownership of fd. name is used for messages. + explicit FilePiece(const char *name, int fd, std::ostream *show_progress = NULL, off_t min_buffer = 33554432); + + char get() throw(EndOfFileException) { + if (position_ == position_end_) Shift(); + return *(position_++); + } + + // Memory backing the returned StringPiece may vanish on the next call. + // Leaves the delimiter, if any, to be returned by get(). + StringPiece ReadDelimited() throw(EndOfFileException) { + SkipSpaces(); + return Consume(FindDelimiterOrEOF()); + } + // Unlike ReadDelimited, this includes leading spaces and consumes the delimiter. + // It is similar to getline in that way. + StringPiece ReadLine(char delim = '\n') throw(EndOfFileException); + + float ReadFloat() throw(EndOfFileException, ParseNumberException); + + void SkipSpaces() throw (EndOfFileException); + + off_t Offset() const { + return position_ - data_.begin() + mapped_offset_; + } + + // Only for testing. + void ForceFallbackToRead() { + fallback_to_read_ = true; + } + + private: + void Initialize(const char *name, std::ostream *show_progress, off_t min_buffer); + + StringPiece Consume(const char *to) { + StringPiece ret(position_, to - position_); + position_ = to; + return ret; + } + + const char *FindDelimiterOrEOF() throw(EndOfFileException); + + void Shift() throw (EndOfFileException); + // Backends to Shift(). + void MMapShift(off_t desired_begin) throw (); + void ReadShift(off_t desired_begin) throw (); + + const char *position_, *last_space_, *position_end_; + + scoped_fd file_; + const off_t total_size_; + const off_t page_; + + size_t default_map_size_; + off_t mapped_offset_; + + // Order matters: file_ should always be destroyed after this. + scoped_memory data_; + + bool at_end_; + bool fallback_to_read_; + + ErsatzProgress progress_; +}; + +} // namespace util + +#endif // UTIL_FILE_PIECE__ diff --git a/klm/util/file_piece_test.cc b/klm/util/file_piece_test.cc new file mode 100644 index 00000000..befb7866 --- /dev/null +++ b/klm/util/file_piece_test.cc @@ -0,0 +1,41 @@ +#include "util/file_piece.hh" + +#define BOOST_TEST_MODULE FilePieceTest +#include <boost/test/unit_test.hpp> +#include <fstream> +#include <iostream> + +namespace util { +namespace { + +/* mmap implementation */ +BOOST_AUTO_TEST_CASE(MMapLine) { + std::fstream ref("file_piece.cc", std::ios::in); + FilePiece test("file_piece.cc", NULL, 1); + std::string ref_line; + while (getline(ref, ref_line)) { + StringPiece test_line(test.ReadLine()); + // I submitted a bug report to ICU: http://bugs.icu-project.org/trac/ticket/7924 + if (!test_line.empty() || !ref_line.empty()) { + BOOST_CHECK_EQUAL(ref_line, test_line); + } + } +} + +/* read() implementation */ +BOOST_AUTO_TEST_CASE(ReadLine) { + std::fstream ref("file_piece.cc", std::ios::in); + FilePiece test("file_piece.cc", NULL, 1); + test.ForceFallbackToRead(); + std::string ref_line; + while (getline(ref, ref_line)) { + StringPiece test_line(test.ReadLine()); + // I submitted a bug report to ICU: http://bugs.icu-project.org/trac/ticket/7924 + if (!test_line.empty() || !ref_line.empty()) { + BOOST_CHECK_EQUAL(ref_line, test_line); + } + } +} + +} // namespace +} // namespace util diff --git a/klm/util/joint_sort.hh b/klm/util/joint_sort.hh new file mode 100644 index 00000000..a2f1c01d --- /dev/null +++ b/klm/util/joint_sort.hh @@ -0,0 +1,145 @@ +#ifndef UTIL_JOINT_SORT__ +#define UTIL_JOINT_SORT__ + +/* A terrifying amount of C++ to coax std::sort into soring one range while + * also permuting another range the same way. + */ + +#include "util/proxy_iterator.hh" + +#include <algorithm> +#include <functional> +#include <iostream> + +namespace util { + +namespace detail { + +template <class KeyIter, class ValueIter> class JointProxy; + +template <class KeyIter, class ValueIter> class JointIter { + public: + JointIter() {} + + JointIter(const KeyIter &key_iter, const ValueIter &value_iter) : key_(key_iter), value_(value_iter) {} + + bool operator==(const JointIter<KeyIter, ValueIter> &other) const { return key_ == other.key_; } + + bool operator<(const JointIter<KeyIter, ValueIter> &other) const { return (key_ < other.key_); } + + std::ptrdiff_t operator-(const JointIter<KeyIter, ValueIter> &other) const { return key_ - other.key_; } + + JointIter<KeyIter, ValueIter> &operator+=(std::ptrdiff_t amount) { + key_ += amount; + value_ += amount; + return *this; + } + + void swap(const JointIter &other) { + std::swap(key_, other.key_); + std::swap(value_, other.value_); + } + + private: + friend class JointProxy<KeyIter, ValueIter>; + KeyIter key_; + ValueIter value_; +}; + +template <class KeyIter, class ValueIter> class JointProxy { + private: + typedef JointIter<KeyIter, ValueIter> InnerIterator; + + public: + typedef struct { + typename std::iterator_traits<KeyIter>::value_type key; + typename std::iterator_traits<ValueIter>::value_type value; + const typename std::iterator_traits<KeyIter>::value_type &GetKey() const { return key; } + } value_type; + + JointProxy(const KeyIter &key_iter, const ValueIter &value_iter) : inner_(key_iter, value_iter) {} + JointProxy(const JointProxy<KeyIter, ValueIter> &other) : inner_(other.inner_) {} + + operator const value_type() const { + value_type ret; + ret.key = *inner_.key_; + ret.value = *inner_.value_; + return ret; + } + + JointProxy &operator=(const JointProxy &other) { + *inner_.key_ = *other.inner_.key_; + *inner_.value_ = *other.inner_.value_; + return *this; + } + + JointProxy &operator=(const value_type &other) { + *inner_.key_ = other.key; + *inner_.value_ = other.value; + return *this; + } + + typename std::iterator_traits<KeyIter>::reference GetKey() const { + return *(inner_.key_); + } + + void swap(JointProxy<KeyIter, ValueIter> &other) { + std::swap(*inner_.key_, *other.inner_.key_); + std::swap(*inner_.value_, *other.inner_.value_); + } + + private: + friend class ProxyIterator<JointProxy<KeyIter, ValueIter> >; + + InnerIterator &Inner() { return inner_; } + const InnerIterator &Inner() const { return inner_; } + InnerIterator inner_; +}; + +template <class Proxy, class Less> class LessWrapper : public std::binary_function<const typename Proxy::value_type &, const typename Proxy::value_type &, bool> { + public: + explicit LessWrapper(const Less &less) : less_(less) {} + + bool operator()(const Proxy &left, const Proxy &right) const { + return less_(left.GetKey(), right.GetKey()); + } + bool operator()(const Proxy &left, const typename Proxy::value_type &right) const { + return less_(left.GetKey(), right.GetKey()); + } + bool operator()(const typename Proxy::value_type &left, const Proxy &right) const { + return less_(left.GetKey(), right.GetKey()); + } + bool operator()(const typename Proxy::value_type &left, const typename Proxy::value_type &right) const { + return less_(left.GetKey(), right.GetKey()); + } + + private: + const Less less_; +}; + +} // namespace detail + +template <class KeyIter, class ValueIter, class Less> void JointSort(const KeyIter &key_begin, const KeyIter &key_end, const ValueIter &value_begin, const Less &less) { + ProxyIterator<detail::JointProxy<KeyIter, ValueIter> > full_begin(detail::JointProxy<KeyIter, ValueIter>(key_begin, value_begin)); + detail::LessWrapper<detail::JointProxy<KeyIter, ValueIter>, Less> less_wrap(less); + std::sort(full_begin, full_begin + (key_end - key_begin), less_wrap); +} + + +template <class KeyIter, class ValueIter> void JointSort(const KeyIter &key_begin, const KeyIter &key_end, const ValueIter &value_begin) { + JointSort(key_begin, key_end, value_begin, std::less<typename std::iterator_traits<KeyIter>::value_type>()); +} + +} // namespace util + +namespace std { +template <class KeyIter, class ValueIter> void swap(util::detail::JointIter<KeyIter, ValueIter> &left, util::detail::JointIter<KeyIter, ValueIter> &right) { + left.swap(right); +} + +template <class KeyIter, class ValueIter> void swap(util::detail::JointProxy<KeyIter, ValueIter> &left, util::detail::JointProxy<KeyIter, ValueIter> &right) { + left.swap(right); +} +} // namespace std + +#endif // UTIL_JOINT_SORT__ diff --git a/klm/util/joint_sort_test.cc b/klm/util/joint_sort_test.cc new file mode 100644 index 00000000..4dc85916 --- /dev/null +++ b/klm/util/joint_sort_test.cc @@ -0,0 +1,50 @@ +#include "util/joint_sort.hh" + +#define BOOST_TEST_MODULE JointSortTest +#include <boost/test/unit_test.hpp> + +namespace util { namespace { + +BOOST_AUTO_TEST_CASE(just_flip) { + char keys[2]; + int values[2]; + keys[0] = 1; values[0] = 327; + keys[1] = 0; values[1] = 87897; + JointSort<char *, int *>(keys + 0, keys + 2, values + 0); + BOOST_CHECK_EQUAL(0, keys[0]); + BOOST_CHECK_EQUAL(87897, values[0]); + BOOST_CHECK_EQUAL(1, keys[1]); + BOOST_CHECK_EQUAL(327, values[1]); +} + +BOOST_AUTO_TEST_CASE(three) { + char keys[3]; + int values[3]; + keys[0] = 1; values[0] = 327; + keys[1] = 2; values[1] = 87897; + keys[2] = 0; values[2] = 10; + JointSort<char *, int *>(keys + 0, keys + 3, values + 0); + BOOST_CHECK_EQUAL(0, keys[0]); + BOOST_CHECK_EQUAL(1, keys[1]); + BOOST_CHECK_EQUAL(2, keys[2]); +} + +BOOST_AUTO_TEST_CASE(char_int) { + char keys[4]; + int values[4]; + keys[0] = 3; values[0] = 327; + keys[1] = 1; values[1] = 87897; + keys[2] = 2; values[2] = 10; + keys[3] = 0; values[3] = 24347; + JointSort<char *, int *>(keys + 0, keys + 4, values + 0); + BOOST_CHECK_EQUAL(0, keys[0]); + BOOST_CHECK_EQUAL(24347, values[0]); + BOOST_CHECK_EQUAL(1, keys[1]); + BOOST_CHECK_EQUAL(87897, values[1]); + BOOST_CHECK_EQUAL(2, keys[2]); + BOOST_CHECK_EQUAL(10, values[2]); + BOOST_CHECK_EQUAL(3, keys[3]); + BOOST_CHECK_EQUAL(327, values[3]); +} + +}} // namespace anonymous util diff --git a/klm/util/key_value_packing.hh b/klm/util/key_value_packing.hh new file mode 100644 index 00000000..450512ac --- /dev/null +++ b/klm/util/key_value_packing.hh @@ -0,0 +1,122 @@ +#ifndef UTIL_KEY_VALUE_PACKING__ +#define UTIL_KEY_VALUE_PACKING__ + +/* Why such a general interface? I'm planning on doing bit-level packing. */ + +#include <algorithm> +#include <cstddef> +#include <cstring> + +#include <inttypes.h> + +namespace util { + +template <class Key, class Value> struct Entry { + Key key; + Value value; + + const Key &GetKey() const { return key; } + const Value &GetValue() const { return value; } + + void Set(const Key &key_in, const Value &value_in) { + SetKey(key_in); + SetValue(value_in); + } + void SetKey(const Key &key_in) { key = key_in; } + void SetValue(const Value &value_in) { value = value_in; } + + bool operator<(const Entry<Key, Value> &other) const { return GetKey() < other.GetKey(); } +}; + +// And now for a brief interlude to specialize std::swap. +} // namespace util +namespace std { +template <class Key, class Value> void swap(util::Entry<Key, Value> &first, util::Entry<Key, Value> &second) { + swap(first.key, second.key); + swap(first.value, second.value); +} +}// namespace std +namespace util { + +template <class KeyT, class ValueT> class AlignedPacking { + public: + typedef KeyT Key; + typedef ValueT Value; + + public: + static const std::size_t kBytes = sizeof(Entry<Key, Value>); + static const std::size_t kBits = kBytes * 8; + + typedef Entry<Key, Value> * MutableIterator; + typedef const Entry<Key, Value> * ConstIterator; + typedef const Entry<Key, Value> & ConstReference; + + static MutableIterator FromVoid(void *start) { + return reinterpret_cast<MutableIterator>(start); + } + + static Entry<Key, Value> Make(const Key &key, const Value &value) { + Entry<Key, Value> ret; + ret.Set(key, value); + return ret; + } +}; + +template <class KeyT, class ValueT> class ByteAlignedPacking { + public: + typedef KeyT Key; + typedef ValueT Value; + + private: +#pragma pack(push) +#pragma pack(1) + struct RawEntry { + Key key; + Value value; + + const Key &GetKey() const { return key; } + const Value &GetValue() const { return value; } + + void Set(const Key &key_in, const Value &value_in) { + SetKey(key_in); + SetValue(value_in); + } + void SetKey(const Key &key_in) { key = key_in; } + void SetValue(const Value &value_in) { value = value_in; } + + bool operator<(const RawEntry &other) const { return GetKey() < other.GetKey(); } + }; +#pragma pack(pop) + + friend void std::swap<>(RawEntry&, RawEntry&); + + public: + typedef RawEntry *MutableIterator; + typedef const RawEntry *ConstIterator; + typedef RawEntry &ConstReference; + + static const std::size_t kBytes = sizeof(RawEntry); + static const std::size_t kBits = kBytes * 8; + + static MutableIterator FromVoid(void *start) { + return MutableIterator(reinterpret_cast<RawEntry*>(start)); + } + + static RawEntry Make(const Key &key, const Value &value) { + RawEntry ret; + ret.Set(key, value); + return ret; + } +}; + +} // namespace util +namespace std { +template <class Key, class Value> void swap( + typename util::ByteAlignedPacking<Key, Value>::RawEntry &first, + typename util::ByteAlignedPacking<Key, Value>::RawEntry &second) { + swap(first.key, second.key); + swap(first.value, second.value); +} +}// namespace std + +#endif // UTIL_KEY_VALUE_PACKING__ diff --git a/klm/util/key_value_packing_test.cc b/klm/util/key_value_packing_test.cc new file mode 100644 index 00000000..a0d33fd7 --- /dev/null +++ b/klm/util/key_value_packing_test.cc @@ -0,0 +1,75 @@ +#include "util/key_value_packing.hh" + +#include <boost/random/mersenne_twister.hpp> +#include <boost/random/uniform_int.hpp> +#include <boost/random/variate_generator.hpp> +#include <boost/scoped_array.hpp> +#define BOOST_TEST_MODULE KeyValueStoreTest +#include <boost/test/unit_test.hpp> + +#include <limits> +#include <stdlib.h> + +namespace util { +namespace { + +BOOST_AUTO_TEST_CASE(basic_in_out) { + typedef ByteAlignedPacking<uint64_t, unsigned char> Packing; + void *backing = malloc(Packing::kBytes * 2); + Packing::MutableIterator i(Packing::FromVoid(backing)); + i->SetKey(10); + BOOST_CHECK_EQUAL(10, i->GetKey()); + i->SetValue(3); + BOOST_CHECK_EQUAL(3, i->GetValue()); + ++i; + i->SetKey(5); + BOOST_CHECK_EQUAL(5, i->GetKey()); + i->SetValue(42); + BOOST_CHECK_EQUAL(42, i->GetValue()); + + Packing::ConstIterator c(i); + BOOST_CHECK_EQUAL(5, c->GetKey()); + --c; + BOOST_CHECK_EQUAL(10, c->GetKey()); + BOOST_CHECK_EQUAL(42, i->GetValue()); + + BOOST_CHECK_EQUAL(5, i->GetKey()); + free(backing); +} + +BOOST_AUTO_TEST_CASE(simple_sort) { + typedef ByteAlignedPacking<uint64_t, unsigned char> Packing; + char foo[Packing::kBytes * 4]; + Packing::MutableIterator begin(Packing::FromVoid(foo)); + Packing::MutableIterator i = begin; + i->SetKey(0); ++i; + i->SetKey(2); ++i; + i->SetKey(3); ++i; + i->SetKey(1); ++i; + std::sort(begin, i); + BOOST_CHECK_EQUAL(0, begin[0].GetKey()); + BOOST_CHECK_EQUAL(1, begin[1].GetKey()); + BOOST_CHECK_EQUAL(2, begin[2].GetKey()); + BOOST_CHECK_EQUAL(3, begin[3].GetKey()); +} + +BOOST_AUTO_TEST_CASE(big_sort) { + typedef ByteAlignedPacking<uint64_t, unsigned char> Packing; + boost::scoped_array<char> memory(new char[Packing::kBytes * 1000]); + Packing::MutableIterator begin(Packing::FromVoid(memory.get())); + + boost::mt19937 rng; + boost::uniform_int<uint64_t> range(0, std::numeric_limits<uint64_t>::max()); + boost::variate_generator<boost::mt19937&, boost::uniform_int<uint64_t> > gen(rng, range); + + for (size_t i = 0; i < 1000; ++i) { + (begin + i)->SetKey(gen()); + } + std::sort(begin, begin + 1000); + for (size_t i = 0; i < 999; ++i) { + BOOST_CHECK(begin[i] < begin[i+1]); + } +} + +} // namespace +} // namespace util diff --git a/klm/util/mmap.cc b/klm/util/mmap.cc new file mode 100644 index 00000000..648b5d0a --- /dev/null +++ b/klm/util/mmap.cc @@ -0,0 +1,95 @@ +#include "util/exception.hh" +#include "util/mmap.hh" +#include "util/scoped.hh" + +#include <assert.h> +#include <err.h> +#include <fcntl.h> +#include <sys/types.h> +#include <sys/mman.h> +#include <stdlib.h> +#include <unistd.h> + +namespace util { + +scoped_mmap::~scoped_mmap() { + if (data_ != (void*)-1) { + if (munmap(data_, size_)) + err(1, "munmap failed "); + } +} + +void scoped_memory::reset(void *data, std::size_t size, Alloc source) { + switch(source_) { + case MMAP_ALLOCATED: + scoped_mmap(data_, size_); + break; + case ARRAY_ALLOCATED: + delete [] reinterpret_cast<char*>(data_); + break; + case MALLOC_ALLOCATED: + free(data_); + break; + case NONE_ALLOCATED: + break; + } + data_ = data; + size_ = size; + source_ = source; +} + +void scoped_memory::call_realloc(std::size_t size) { + assert(source_ == MALLOC_ALLOCATED || source_ == NONE_ALLOCATED); + void *new_data = realloc(data_, size); + if (!new_data) { + reset(); + } else { + reset(new_data, size, MALLOC_ALLOCATED); + } +} + +void *MapOrThrow(std::size_t size, bool for_write, int flags, bool prefault, int fd, off_t offset) { +#ifdef MAP_POPULATE // Linux specific + if (prefault) { + flags |= MAP_POPULATE; + } + int protect = for_write ? (PROT_READ | PROT_WRITE) : PROT_READ; +#else + int protect = for_write ? (PROT_READ | PROT_WRITE) : PROT_READ; +#endif + void *ret = mmap(NULL, size, protect, flags, fd, offset); + if (ret == MAP_FAILED) { + UTIL_THROW(ErrnoException, "mmap failed for size " << size << " at offset " << offset); + } + return ret; +} + +void *MapForRead(std::size_t size, bool prefault, int fd, off_t offset) { + return MapOrThrow(size, false, MAP_FILE | MAP_PRIVATE, prefault, fd, offset); +} + +void *MapAnonymous(std::size_t size) { + return MapOrThrow(size, true, +#ifdef MAP_ANONYMOUS + MAP_ANONYMOUS // Linux +#else + MAP_ANON // BSD +#endif + | MAP_PRIVATE, false, -1, 0); +} + +void MapZeroedWrite(const char *name, std::size_t size, scoped_fd &file, scoped_mmap &mem) { + file.reset(open(name, O_CREAT | O_RDWR | O_TRUNC, S_IRUSR | S_IWUSR | S_IRGRP | S_IROTH)); + if (-1 == file.get()) + UTIL_THROW(ErrnoException, "Failed to open " << name << " for writing"); + if (-1 == ftruncate(file.get(), size)) + UTIL_THROW(ErrnoException, "ftruncate on " << name << " to " << size << " failed"); + try { + mem.reset(MapOrThrow(size, true, MAP_FILE | MAP_SHARED, false, file.get(), 0), size); + } catch (ErrnoException &e) { + e << " in file " << name; + throw; + } +} + +} // namespace util diff --git a/klm/util/mmap.hh b/klm/util/mmap.hh new file mode 100644 index 00000000..c9068ec9 --- /dev/null +++ b/klm/util/mmap.hh @@ -0,0 +1,101 @@ +#ifndef UTIL_MMAP__ +#define UTIL_MMAP__ +// Utilities for mmaped files. + +#include "util/scoped.hh" + +#include <cstddef> + +#include <sys/types.h> + +namespace util { + +// (void*)-1 is MAP_FAILED; this is done to avoid including the mmap header here. +class scoped_mmap { + public: + scoped_mmap() : data_((void*)-1), size_(0) {} + scoped_mmap(void *data, std::size_t size) : data_(data), size_(size) {} + ~scoped_mmap(); + + void *get() const { return data_; } + + const char *begin() const { return reinterpret_cast<char*>(data_); } + const char *end() const { return reinterpret_cast<char*>(data_) + size_; } + std::size_t size() const { return size_; } + + void reset(void *data, std::size_t size) { + scoped_mmap other(data_, size_); + data_ = data; + size_ = size; + } + + void reset() { + reset((void*)-1, 0); + } + + private: + void *data_; + std::size_t size_; + + scoped_mmap(const scoped_mmap &); + scoped_mmap &operator=(const scoped_mmap &); +}; + +/* For when the memory might come from mmap, new char[], or malloc. Uses NULL + * and 0 for blanks even though mmap signals errors with (void*)-1). The reset + * function checks that blank for mmap. + */ +class scoped_memory { + public: + typedef enum {MMAP_ALLOCATED, ARRAY_ALLOCATED, MALLOC_ALLOCATED, NONE_ALLOCATED} Alloc; + + scoped_memory() : data_(NULL), size_(0), source_(NONE_ALLOCATED) {} + + ~scoped_memory() { reset(); } + + void *get() const { return data_; } + const char *begin() const { return reinterpret_cast<char*>(data_); } + const char *end() const { return reinterpret_cast<char*>(data_) + size_; } + std::size_t size() const { return size_; } + + Alloc source() const { return source_; } + + void reset() { reset(NULL, 0, NONE_ALLOCATED); } + + void reset(void *data, std::size_t size, Alloc from); + + // realloc allows the current data to escape hence the need for this call + // If realloc fails, destroys the original too and get() returns NULL. + void call_realloc(std::size_t to); + + private: + + void *data_; + std::size_t size_; + + Alloc source_; + + scoped_memory(const scoped_memory &); + scoped_memory &operator=(const scoped_memory &); +}; + +struct scoped_mapped_file { + scoped_fd fd; + scoped_mmap mem; +}; + +// Wrapper around mmap to check it worked and hide some platform macros. +void *MapOrThrow(std::size_t size, bool for_write, int flags, bool prefault, int fd, off_t offset = 0); +void *MapForRead(std::size_t size, bool prefault, int fd, off_t offset = 0); + +void *MapAnonymous(std::size_t size); + +// Open file name with mmap of size bytes, all of which are initially zero. +void MapZeroedWrite(const char *name, std::size_t size, scoped_fd &file, scoped_mmap &mem); +inline void MapZeroedWrite(const char *name, std::size_t size, scoped_mapped_file &out) { + MapZeroedWrite(name, size, out.fd, out.mem); +} + +} // namespace util + +#endif // UTIL_SCOPED__ diff --git a/klm/util/murmur_hash.cc b/klm/util/murmur_hash.cc new file mode 100644 index 00000000..d58a0727 --- /dev/null +++ b/klm/util/murmur_hash.cc @@ -0,0 +1,129 @@ +/* Downloaded from http://sites.google.com/site/murmurhash/ which says "All
+ * code is released to the public domain. For business purposes, Murmurhash is
+ * under the MIT license."
+ * This is modified from the original:
+ * ULL tag on 0xc6a4a7935bd1e995 so this will compile on 32-bit.
+ * length changed to unsigned int.
+ * placed in namespace util
+ * add MurmurHashNative
+ * default option = 0 for seed
+ */
+
+#include "util/murmur_hash.hh"
+
+namespace util {
+
+//-----------------------------------------------------------------------------
+// MurmurHash2, 64-bit versions, by Austin Appleby
+
+// The same caveats as 32-bit MurmurHash2 apply here - beware of alignment
+// and endian-ness issues if used across multiple platforms.
+
+// 64-bit hash for 64-bit platforms
+
+uint64_t MurmurHash64A ( const void * key, std::size_t len, unsigned int seed )
+{
+ const uint64_t m = 0xc6a4a7935bd1e995ULL;
+ const int r = 47;
+
+ uint64_t h = seed ^ (len * m);
+
+ const uint64_t * data = (const uint64_t *)key;
+ const uint64_t * end = data + (len/8);
+
+ while(data != end)
+ {
+ uint64_t k = *data++;
+
+ k *= m;
+ k ^= k >> r;
+ k *= m;
+
+ h ^= k;
+ h *= m;
+ }
+
+ const unsigned char * data2 = (const unsigned char*)data;
+
+ switch(len & 7)
+ {
+ case 7: h ^= uint64_t(data2[6]) << 48;
+ case 6: h ^= uint64_t(data2[5]) << 40;
+ case 5: h ^= uint64_t(data2[4]) << 32;
+ case 4: h ^= uint64_t(data2[3]) << 24;
+ case 3: h ^= uint64_t(data2[2]) << 16;
+ case 2: h ^= uint64_t(data2[1]) << 8;
+ case 1: h ^= uint64_t(data2[0]);
+ h *= m;
+ };
+
+ h ^= h >> r;
+ h *= m;
+ h ^= h >> r;
+
+ return h;
+}
+
+
+// 64-bit hash for 32-bit platforms
+
+uint64_t MurmurHash64B ( const void * key, std::size_t len, unsigned int seed )
+{
+ const unsigned int m = 0x5bd1e995;
+ const int r = 24;
+
+ unsigned int h1 = seed ^ len;
+ unsigned int h2 = 0;
+
+ const unsigned int * data = (const unsigned int *)key;
+
+ while(len >= 8)
+ {
+ unsigned int k1 = *data++;
+ k1 *= m; k1 ^= k1 >> r; k1 *= m;
+ h1 *= m; h1 ^= k1;
+ len -= 4;
+
+ unsigned int k2 = *data++;
+ k2 *= m; k2 ^= k2 >> r; k2 *= m;
+ h2 *= m; h2 ^= k2;
+ len -= 4;
+ }
+
+ if(len >= 4)
+ {
+ unsigned int k1 = *data++;
+ k1 *= m; k1 ^= k1 >> r; k1 *= m;
+ h1 *= m; h1 ^= k1;
+ len -= 4;
+ }
+
+ switch(len)
+ {
+ case 3: h2 ^= ((unsigned char*)data)[2] << 16;
+ case 2: h2 ^= ((unsigned char*)data)[1] << 8;
+ case 1: h2 ^= ((unsigned char*)data)[0];
+ h2 *= m;
+ };
+
+ h1 ^= h2 >> 18; h1 *= m;
+ h2 ^= h1 >> 22; h2 *= m;
+ h1 ^= h2 >> 17; h1 *= m;
+ h2 ^= h1 >> 19; h2 *= m;
+
+ uint64_t h = h1;
+
+ h = (h << 32) | h2;
+
+ return h;
+}
+
+uint64_t MurmurHashNative(const void * key, std::size_t len, unsigned int seed) {
+ if (sizeof(int) == 4) {
+ return MurmurHash64B(key, len, seed);
+ } else {
+ return MurmurHash64A(key, len, seed);
+ }
+}
+
+} // namespace util
diff --git a/klm/util/murmur_hash.hh b/klm/util/murmur_hash.hh new file mode 100644 index 00000000..638aaeb2 --- /dev/null +++ b/klm/util/murmur_hash.hh @@ -0,0 +1,14 @@ +#ifndef UTIL_MURMUR_HASH__ +#define UTIL_MURMUR_HASH__ +#include <cstddef> +#include <stdint.h> + +namespace util { + +uint64_t MurmurHash64A(const void * key, std::size_t len, unsigned int seed = 0); +uint64_t MurmurHash64B(const void * key, std::size_t len, unsigned int seed = 0); +uint64_t MurmurHashNative(const void * key, std::size_t len, unsigned int seed = 0); + +} // namespace util + +#endif // UTIL_MURMUR_HASH__ diff --git a/klm/util/probing_hash_table.hh b/klm/util/probing_hash_table.hh new file mode 100644 index 00000000..c3529a7e --- /dev/null +++ b/klm/util/probing_hash_table.hh @@ -0,0 +1,97 @@ +#ifndef UTIL_PROBING_HASH_TABLE__ +#define UTIL_PROBING_HASH_TABLE__ + +#include <algorithm> +#include <cstddef> +#include <functional> + +#include <assert.h> + +namespace util { + +/* Non-standard hash table + * Buckets must be set at the beginning and must be greater than maximum number + * of elements, else an infinite loop happens. + * Memory management and initialization is externalized to make it easier to + * serialize these to disk and load them quickly. + * Uses linear probing to find value. + * Only insert and lookup operations. + */ + +template <class PackingT, class HashT, class EqualT = std::equal_to<typename PackingT::Key> > class ProbingHashTable { + public: + typedef PackingT Packing; + typedef typename Packing::Key Key; + typedef typename Packing::MutableIterator MutableIterator; + typedef typename Packing::ConstIterator ConstIterator; + + typedef HashT Hash; + typedef EqualT Equal; + + static std::size_t Size(std::size_t entries, float multiplier) { + return std::max(entries + 1, static_cast<std::size_t>(multiplier * static_cast<float>(entries))) * Packing::kBytes; + } + + // Must be assigned to later. + ProbingHashTable() +#ifdef DEBUG + : initialized_(false), entries_(0) +#endif + {} + + ProbingHashTable(void *start, std::size_t allocated, const Key &invalid = Key(), const Hash &hash_func = Hash(), const Equal &equal_func = Equal()) + : begin_(Packing::FromVoid(start)), + buckets_(allocated / Packing::kBytes), + end_(begin_ + (allocated / Packing::kBytes)), + invalid_(invalid), + hash_(hash_func), + equal_(equal_func) +#ifdef DEBUG + , initialized_(true), + entries_(0) +#endif + {} + + template <class T> void Insert(const T &t) { +#ifdef DEBUG + assert(initialized_); + assert(++entries_ < buckets_); +#endif + for (MutableIterator i(begin_ + (hash_(t.GetKey()) % buckets_));;) { + if (equal_(i->GetKey(), invalid_)) { *i = t; return; } + if (++i == end_) { i = begin_; } + } + } + + void FinishedInserting() {} + + void LoadedBinary() {} + + template <class Key> bool Find(const Key key, ConstIterator &out) const { +#ifdef DEBUG + assert(initialized_); +#endif + for (ConstIterator i(begin_ + (hash_(key) % buckets_));;) { + Key got(i->GetKey()); + if (equal_(got, key)) { out = i; return true; } + if (equal_(got, invalid_)) { return false; } + if (++i == end_) { i = begin_; } + } + } + + private: + MutableIterator begin_; + std::size_t buckets_; + MutableIterator end_; + Key invalid_; + Hash hash_; + Equal equal_; +#ifdef DEBUG + bool initialized_; + std::size_t entries_; +#endif +}; + +} // namespace util + +#endif // UTIL_PROBING_HASH_TABLE__ diff --git a/klm/util/probing_hash_table_test.cc b/klm/util/probing_hash_table_test.cc new file mode 100644 index 00000000..ff2f5af3 --- /dev/null +++ b/klm/util/probing_hash_table_test.cc @@ -0,0 +1,30 @@ +#include "util/probing_hash_table.hh" + +#include "util/key_value_packing.hh" + +#define BOOST_TEST_MODULE ProbingHashTableTest +#include <boost/test/unit_test.hpp> +#include <boost/functional/hash.hpp> + +namespace util { +namespace { + +typedef AlignedPacking<char, uint64_t> Packing; +typedef ProbingHashTable<Packing, boost::hash<char> > Table; + +BOOST_AUTO_TEST_CASE(simple) { + char mem[Table::Size(10, 1.2)]; + memset(mem, 0, sizeof(mem)); + + Table table(mem, sizeof(mem)); + Packing::ConstIterator i = Packing::ConstIterator(); + BOOST_CHECK(!table.Find(2, i)); + table.Insert(Packing::Make(3, 328920)); + BOOST_REQUIRE(table.Find(3, i)); + BOOST_CHECK_EQUAL(3, i->GetKey()); + BOOST_CHECK_EQUAL(static_cast<uint64_t>(328920), i->GetValue()); + BOOST_CHECK(!table.Find(2, i)); +} + +} // namespace +} // namespace util diff --git a/klm/util/proxy_iterator.hh b/klm/util/proxy_iterator.hh new file mode 100644 index 00000000..1c5b7089 --- /dev/null +++ b/klm/util/proxy_iterator.hh @@ -0,0 +1,94 @@ +#ifndef UTIL_PROXY_ITERATOR__ +#define UTIL_PROXY_ITERATOR__ + +#include <cstddef> +#include <iterator> + +/* This is a RandomAccessIterator that uses a proxy to access the underlying + * data. Useful for packing data at bit offsets but still using STL + * algorithms. + * + * Normally I would use boost::iterator_facade but some people are too lazy to + * install boost and still want to use my language model. It's amazing how + * many operators an iterator has. + * + * The Proxy needs to provide: + * class InnerIterator; + * InnerIterator &Inner(); + * const InnerIterator &Inner() const; + * + * InnerIterator has to implement: + * operator==(InnerIterator) + * operator<(InnerIterator) + * operator+=(std::ptrdiff_t) + * operator-(InnerIterator) + * and of course whatever Proxy needs to dereference it. + * + * It's also a good idea to specialize std::swap for Proxy. + */ + +namespace util { +template <class Proxy> class ProxyIterator { + private: + // Self. + typedef ProxyIterator<Proxy> S; + typedef typename Proxy::InnerIterator InnerIterator; + + public: + typedef std::random_access_iterator_tag iterator_category; + typedef typename Proxy::value_type value_type; + typedef std::ptrdiff_t difference_type; + typedef Proxy reference; + typedef Proxy * pointer; + + ProxyIterator() {} + + // For cast from non const to const. + template <class AlternateProxy> ProxyIterator(const ProxyIterator<AlternateProxy> &in) : p_(*in) {} + explicit ProxyIterator(const Proxy &p) : p_(p) {} + + // p_'s operator= does value copying, but here we want iterator copying. + S &operator=(const S &other) { + I() = other.I(); + return *this; + } + + bool operator==(const S &other) const { return I() == other.I(); } + bool operator!=(const S &other) const { return !(*this == other); } + bool operator<(const S &other) const { return I() < other.I(); } + bool operator>(const S &other) const { return other < *this; } + bool operator<=(const S &other) const { return !(*this > other); } + bool operator>=(const S &other) const { return !(*this < other); } + + S &operator++() { return *this += 1; } + S operator++(int) { S ret(*this); ++*this; return ret; } + S &operator+=(std::ptrdiff_t amount) { I() += amount; return *this; } + S operator+(std::ptrdiff_t amount) const { S ret(*this); ret += amount; return ret; } + + S &operator--() { return *this -= 1; } + S operator--(int) { S ret(*this); --*this; return ret; } + S &operator-=(std::ptrdiff_t amount) { I() += (-amount); return *this; } + S operator-(std::ptrdiff_t amount) const { S ret(*this); ret -= amount; return ret; } + + std::ptrdiff_t operator-(const S &other) const { return I() - other.I(); } + + Proxy operator*() { return p_; } + const Proxy operator*() const { return p_; } + Proxy *operator->() { return &p_; } + const Proxy *operator->() const { return &p_; } + Proxy operator[](std::ptrdiff_t amount) const { return *(*this + amount); } + + private: + InnerIterator &I() { return p_.Inner(); } + const InnerIterator &I() const { return p_.Inner(); } + + Proxy p_; +}; + +template <class Proxy> ProxyIterator<Proxy> operator+(std::ptrdiff_t amount, const ProxyIterator<Proxy> &it) { + return it + amount; +} + +} // namespace util + +#endif // UTIL_PROXY_ITERATOR__ diff --git a/klm/util/scoped.cc b/klm/util/scoped.cc new file mode 100644 index 00000000..61394ffc --- /dev/null +++ b/klm/util/scoped.cc @@ -0,0 +1,12 @@ +#include "util/scoped.hh" + +#include <err.h> +#include <unistd.h> + +namespace util { + +scoped_fd::~scoped_fd() { + if (fd_ != -1 && close(fd_)) err(1, "Could not close file %i", fd_); +} + +} // namespace util diff --git a/klm/util/scoped.hh b/klm/util/scoped.hh new file mode 100644 index 00000000..ef62a74f --- /dev/null +++ b/klm/util/scoped.hh @@ -0,0 +1,66 @@ +#ifndef UTIL_SCOPED__ +#define UTIL_SCOPED__ + +/* Other scoped objects in the style of scoped_ptr. */ + +#include <cstddef> + +namespace util { + +template <class T, class R, R (*Free)(T*)> class scoped_thing { + public: + explicit scoped_thing(T *c = static_cast<T*>(0)) : c_(c) {} + + ~scoped_thing() { if (c_) Free(c_); } + + void reset(T *c) { + if (c_) Free(c_); + c_ = c; + } + + T &operator*() { return *c_; } + T &operator->() { return *c_; } + + T *get() { return c_; } + const T *get() const { return c_; } + + private: + T *c_; + + scoped_thing(const scoped_thing &); + scoped_thing &operator=(const scoped_thing &); +}; + +class scoped_fd { + public: + scoped_fd() : fd_(-1) {} + + explicit scoped_fd(int fd) : fd_(fd) {} + + ~scoped_fd(); + + void reset(int to) { + scoped_fd other(fd_); + fd_ = to; + } + + int get() const { return fd_; } + + int operator*() const { return fd_; } + + int release() { + int ret = fd_; + fd_ = -1; + return ret; + } + + private: + int fd_; + + scoped_fd(const scoped_fd &); + scoped_fd &operator=(const scoped_fd &); +}; + +} // namespace util + +#endif // UTIL_SCOPED__ diff --git a/klm/util/sorted_uniform.hh b/klm/util/sorted_uniform.hh new file mode 100644 index 00000000..96ec4866 --- /dev/null +++ b/klm/util/sorted_uniform.hh @@ -0,0 +1,139 @@ +#ifndef UTIL_SORTED_UNIFORM__ +#define UTIL_SORTED_UNIFORM__ + +#include <algorithm> +#include <cstddef> + +#include <assert.h> +#include <inttypes.h> + +namespace util { + +inline std::size_t Pivot(uint64_t off, uint64_t range, std::size_t width) { + std::size_t ret = static_cast<std::size_t>(static_cast<float>(off) / static_cast<float>(range) * static_cast<float>(width)); + // Cap for floating point rounding + return (ret < width) ? ret : width - 1; +} +/*inline std::size_t Pivot(uint32_t off, uint32_t range, std::size_t width) { + return static_cast<std::size_t>(static_cast<uint64_t>(off) * static_cast<uint64_t>(width) / static_cast<uint64_t>(range)); +} +inline std::size_t Pivot(uint16_t off, uint16_t range, std::size_t width) { + return static_cast<std::size_t>(static_cast<std::size_t>(off) * width / static_cast<std::size_t>(range)); +} +inline std::size_t Pivot(unsigned char off, unsigned char range, std::size_t width) { + return static_cast<std::size_t>(static_cast<std::size_t>(off) * width / static_cast<std::size_t>(range)); +}*/ + +template <class Iterator, class Key> bool SortedUniformFind(Iterator begin, Iterator end, const Key key, Iterator &out) { + if (begin == end) return false; + Key below(begin->GetKey()); + if (key <= below) { + if (key == below) { out = begin; return true; } + return false; + } + // Make the range [begin, end]. + --end; + Key above(end->GetKey()); + if (key >= above) { + if (key == above) { out = end; return true; } + return false; + } + + // Search the range [begin + 1, end - 1] knowing that *begin == below, *end == above. + while (end - begin > 1) { + Iterator pivot(begin + (1 + Pivot(key - below, above - below, static_cast<std::size_t>(end - begin - 1)))); + Key mid(pivot->GetKey()); + if (mid < key) { + begin = pivot; + below = mid; + } else if (mid > key) { + end = pivot; + above = mid; + } else { + out = pivot; + return true; + } + } + return false; +} + +// To use this template, you need to define a Pivot function to match Key. +template <class PackingT> class SortedUniformMap { + public: + typedef PackingT Packing; + typedef typename Packing::ConstIterator ConstIterator; + + public: + // Offer consistent API with probing hash. + static std::size_t Size(std::size_t entries, float ignore = 0.0) { + return sizeof(uint64_t) + entries * Packing::kBytes; + } + + SortedUniformMap() +#ifdef DEBUG + : initialized_(false), loaded_(false) +#endif + {} + + SortedUniformMap(void *start, std::size_t allocated) : + begin_(Packing::FromVoid(reinterpret_cast<uint64_t*>(start) + 1)), + end_(begin_), size_ptr_(reinterpret_cast<uint64_t*>(start)) +#ifdef DEBUG + , initialized_(true), loaded_(false) +#endif + {} + + void LoadedBinary() { +#ifdef DEBUG + assert(initialized_); + assert(!loaded_); + loaded_ = true; +#endif + // Restore the size. + end_ = begin_ + *size_ptr_; + } + + // Caller responsible for not exceeding specified size. Do not call after FinishedInserting. + template <class T> void Insert(const T &t) { +#ifdef DEBUG + assert(initialized_); + assert(!loaded_); +#endif + *end_ = t; + ++end_; + } + + void FinishedInserting() { +#ifdef DEBUG + assert(initialized_); + assert(!loaded_); + loaded_ = true; +#endif + std::sort(begin_, end_); + *size_ptr_ = (end_ - begin_); + } + + // Do not call before FinishedInserting. + template <class Key> bool Find(const Key key, ConstIterator &out) const { +#ifdef DEBUG + assert(initialized_); + assert(loaded_); +#endif + return SortedUniformFind<ConstIterator, Key>(ConstIterator(begin_), ConstIterator(end_), key, out); + } + + ConstIterator begin() const { return begin_; } + ConstIterator end() const { return end_; } + + private: + typename Packing::MutableIterator begin_, end_; + uint64_t *size_ptr_; +#ifdef DEBUG + bool initialized_; + bool loaded_; +#endif +}; + +} // namespace util + +#endif // UTIL_SORTED_UNIFORM__ diff --git a/klm/util/sorted_uniform_test.cc b/klm/util/sorted_uniform_test.cc new file mode 100644 index 00000000..4aa4c8aa --- /dev/null +++ b/klm/util/sorted_uniform_test.cc @@ -0,0 +1,116 @@ +#include "util/sorted_uniform.hh" + +#include "util/key_value_packing.hh" + +#include <boost/random/mersenne_twister.hpp> +#include <boost/random/uniform_int.hpp> +#include <boost/random/variate_generator.hpp> +#include <boost/scoped_array.hpp> +#include <boost/unordered_map.hpp> +#define BOOST_TEST_MODULE SortedUniformTest +#include <boost/test/unit_test.hpp> + +#include <algorithm> +#include <limits> +#include <vector> + +namespace util { +namespace { + +template <class Map, class Key, class Value> void Check(const Map &map, const boost::unordered_map<Key, Value> &reference, const Key key) { + typename boost::unordered_map<Key, Value>::const_iterator ref = reference.find(key); + typename Map::ConstIterator i = typename Map::ConstIterator(); + if (ref == reference.end()) { + BOOST_CHECK(!map.Find(key, i)); + } else { + // g++ can't tell that require will crash and burn. + BOOST_REQUIRE(map.Find(key, i)); + BOOST_CHECK_EQUAL(ref->second, i->GetValue()); + } +} + +typedef SortedUniformMap<AlignedPacking<uint64_t, uint32_t> > TestMap; + +BOOST_AUTO_TEST_CASE(empty) { + char buf[TestMap::Size(0)]; + TestMap map(buf, TestMap::Size(0)); + map.FinishedInserting(); + TestMap::ConstIterator i; + BOOST_CHECK(!map.Find(42, i)); +} + +BOOST_AUTO_TEST_CASE(one) { + char buf[TestMap::Size(1)]; + TestMap map(buf, sizeof(buf)); + Entry<uint64_t, uint32_t> e; + e.Set(42,2); + map.Insert(e); + map.FinishedInserting(); + TestMap::ConstIterator i = TestMap::ConstIterator(); + BOOST_REQUIRE(map.Find(42, i)); + BOOST_CHECK(i == map.begin()); + BOOST_CHECK(!map.Find(43, i)); + BOOST_CHECK(!map.Find(41, i)); +} + +template <class Key> void RandomTest(Key upper, size_t entries, size_t queries) { + typedef unsigned char Value; + typedef SortedUniformMap<AlignedPacking<Key, unsigned char> > Map; + boost::scoped_array<char> buffer(new char[Map::Size(entries)]); + Map map(buffer.get(), entries); + boost::mt19937 rng; + boost::uniform_int<Key> range_key(0, upper); + boost::uniform_int<Value> range_value(0, 255); + boost::variate_generator<boost::mt19937&, boost::uniform_int<Key> > gen_key(rng, range_key); + boost::variate_generator<boost::mt19937&, boost::uniform_int<unsigned char> > gen_value(rng, range_value); + + boost::unordered_map<Key, unsigned char> reference; + Entry<Key, unsigned char> ent; + for (size_t i = 0; i < entries; ++i) { + Key key = gen_key(); + unsigned char value = gen_value(); + if (reference.insert(std::make_pair(key, value)).second) { + ent.Set(key, value); + map.Insert(Entry<Key, unsigned char>(ent)); + } + } + map.FinishedInserting(); + + // Random queries. + for (size_t i = 0; i < queries; ++i) { + const Key key = gen_key(); + Check<Map, Key, unsigned char>(map, reference, key); + } + + typename boost::unordered_map<Key, unsigned char>::const_iterator it = reference.begin(); + for (size_t i = 0; (i < queries) && (it != reference.end()); ++i, ++it) { + Check<Map, Key, unsigned char>(map, reference, it->second); + } +} + +BOOST_AUTO_TEST_CASE(basic) { + RandomTest<uint8_t>(11, 10, 200); +} + +BOOST_AUTO_TEST_CASE(tiny_dense_random) { + RandomTest<uint8_t>(11, 50, 200); +} + +BOOST_AUTO_TEST_CASE(small_dense_random) { + RandomTest<uint8_t>(100, 100, 200); +} + +BOOST_AUTO_TEST_CASE(small_sparse_random) { + RandomTest<uint8_t>(200, 15, 200); +} + +BOOST_AUTO_TEST_CASE(medium_sparse_random) { + RandomTest<uint16_t>(32000, 1000, 2000); +} + +BOOST_AUTO_TEST_CASE(sparse_random) { + RandomTest<uint64_t>(std::numeric_limits<uint64_t>::max(), 100000, 2000); +} + +} // namespace +} // namespace util diff --git a/klm/util/string_piece.cc b/klm/util/string_piece.cc new file mode 100644 index 00000000..6917a6bc --- /dev/null +++ b/klm/util/string_piece.cc @@ -0,0 +1,57 @@ +// Copyright 2008, Google Inc. +// All rights reserved. +// +// Redistribution and use in source and binary forms, with or without +// modification, are permitted provided that the following conditions are +// met: +// +// * Redistributions of source code must retain the above copyright +// notice, this list of conditions and the following disclaimer. +// * Redistributions in binary form must reproduce the above +// copyright notice, this list of conditions and the following disclaimer +// in the documentation and/or other materials provided with the +// distribution. +// * Neither the name of Google Inc. nor the names of its +// contributors may be used to endorse or promote products derived from +// this software without specific prior written permission. +// +// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS +// "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT +// LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR +// A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT +// OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT +// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, +// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY +// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE +// OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +// Copied from strings/stringpiece.cc with modifications + +#include "util/string_piece.hh" + +#ifdef USE_BOOST +#include <boost/functional/hash/hash.hpp> +#endif + +#include <algorithm> +#include <iostream> + +#ifdef USE_ICU +U_NAMESPACE_BEGIN +#endif + +std::ostream& operator<<(std::ostream& o, const StringPiece& piece) { + o.write(piece.data(), static_cast<std::streamsize>(piece.size())); + return o; +} + +#ifdef USE_BOOST +size_t hash_value(const StringPiece &str) { + return boost::hash_range(str.data(), str.data() + str.length()); +} +#endif + +#ifdef USE_ICU +U_NAMESPACE_END +#endif diff --git a/klm/util/string_piece.hh b/klm/util/string_piece.hh new file mode 100644 index 00000000..58008d13 --- /dev/null +++ b/klm/util/string_piece.hh @@ -0,0 +1,260 @@ +/* If you use ICU in your program, then compile with -DUSE_ICU -licui18n. If + * you don't use ICU, then this will use the Google implementation from Chrome. + * This has been modified from the original version to let you choose. + */ + +// Copyright 2008, Google Inc. +// All rights reserved. +// +// Redistribution and use in source and binary forms, with or without +// modification, are permitted provided that the following conditions are +// met: +// +// * Redistributions of source code must retain the above copyright +// notice, this list of conditions and the following disclaimer. +// * Redistributions in binary form must reproduce the above +// copyright notice, this list of conditions and the following disclaimer +// in the documentation and/or other materials provided with the +// distribution. +// * Neither the name of Google Inc. nor the names of its +// contributors may be used to endorse or promote products derived from +// this software without specific prior written permission. +// +// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS +// "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT +// LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR +// A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT +// OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT +// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, +// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY +// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE +// OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +// Copied from strings/stringpiece.h with modifications +// +// A string-like object that points to a sized piece of memory. +// +// Functions or methods may use const StringPiece& parameters to accept either +// a "const char*" or a "string" value that will be implicitly converted to +// a StringPiece. The implicit conversion means that it is often appropriate +// to include this .h file in other files rather than forward-declaring +// StringPiece as would be appropriate for most other Google classes. +// +// Systematic usage of StringPiece is encouraged as it will reduce unnecessary +// conversions from "const char*" to "string" and back again. +// + +#ifndef BASE_STRING_PIECE_H__ +#define BASE_STRING_PIECE_H__ + +//Uncomment this line if you use ICU in your code. +//#define USE_ICU +//Uncomment this line if you want boost hashing for your StringPieces. +//#define USE_BOOST + +#include <cstring> +#include <iosfwd> + +#ifdef USE_ICU +#include <unicode/stringpiece.h> +U_NAMESPACE_BEGIN +#else + +#include <algorithm> +#include <ostream> +#include <string> +#include <string.h> + +class StringPiece { + public: + typedef size_t size_type; + + private: + const char* ptr_; + size_type length_; + + public: + // We provide non-explicit singleton constructors so users can pass + // in a "const char*" or a "string" wherever a "StringPiece" is + // expected. + StringPiece() : ptr_(NULL), length_(0) { } + StringPiece(const char* str) + : ptr_(str), length_((str == NULL) ? 0 : strlen(str)) { } + StringPiece(const std::string& str) + : ptr_(str.data()), length_(str.size()) { } + StringPiece(const char* offset, size_type len) + : ptr_(offset), length_(len) { } + + // data() may return a pointer to a buffer with embedded NULs, and the + // returned buffer may or may not be null terminated. Therefore it is + // typically a mistake to pass data() to a routine that expects a NUL + // terminated string. + const char* data() const { return ptr_; } + size_type size() const { return length_; } + size_type length() const { return length_; } + bool empty() const { return length_ == 0; } + + void clear() { ptr_ = NULL; length_ = 0; } + void set(const char* data, size_type len) { ptr_ = data; length_ = len; } + void set(const char* str) { + ptr_ = str; + length_ = str ? strlen(str) : 0; + } + void set(const void* data, size_type len) { + ptr_ = reinterpret_cast<const char*>(data); + length_ = len; + } + + char operator[](size_type i) const { return ptr_[i]; } + + void remove_prefix(size_type n) { + ptr_ += n; + length_ -= n; + } + + void remove_suffix(size_type n) { + length_ -= n; + } + + int compare(const StringPiece& x) const { + int r = wordmemcmp(ptr_, x.ptr_, std::min(length_, x.length_)); + if (r == 0) { + if (length_ < x.length_) r = -1; + else if (length_ > x.length_) r = +1; + } + return r; + } + + std::string as_string() const { + // std::string doesn't like to take a NULL pointer even with a 0 size. + return std::string(!empty() ? data() : "", size()); + } + + void CopyToString(std::string* target) const; + void AppendToString(std::string* target) const; + + // Does "this" start with "x" + bool starts_with(const StringPiece& x) const { + return ((length_ >= x.length_) && + (wordmemcmp(ptr_, x.ptr_, x.length_) == 0)); + } + + // Does "this" end with "x" + bool ends_with(const StringPiece& x) const { + return ((length_ >= x.length_) && + (wordmemcmp(ptr_ + (length_-x.length_), x.ptr_, x.length_) == 0)); + } + + // standard STL container boilerplate + typedef char value_type; + typedef const char* pointer; + typedef const char& reference; + typedef const char& const_reference; + typedef ptrdiff_t difference_type; + static const size_type npos; + typedef const char* const_iterator; + typedef const char* iterator; + typedef std::reverse_iterator<const_iterator> const_reverse_iterator; + typedef std::reverse_iterator<iterator> reverse_iterator; + iterator begin() const { return ptr_; } + iterator end() const { return ptr_ + length_; } + const_reverse_iterator rbegin() const { + return const_reverse_iterator(ptr_ + length_); + } + const_reverse_iterator rend() const { + return const_reverse_iterator(ptr_); + } + + size_type max_size() const { return length_; } + size_type capacity() const { return length_; } + + size_type copy(char* buf, size_type n, size_type pos = 0) const; + + size_type find(const StringPiece& s, size_type pos = 0) const; + size_type find(char c, size_type pos = 0) const; + size_type rfind(const StringPiece& s, size_type pos = npos) const; + size_type rfind(char c, size_type pos = npos) const; + + size_type find_first_of(const StringPiece& s, size_type pos = 0) const; + size_type find_first_of(char c, size_type pos = 0) const { + return find(c, pos); + } + size_type find_first_not_of(const StringPiece& s, size_type pos = 0) const; + size_type find_first_not_of(char c, size_type pos = 0) const; + size_type find_last_of(const StringPiece& s, size_type pos = npos) const; + size_type find_last_of(char c, size_type pos = npos) const { + return rfind(c, pos); + } + size_type find_last_not_of(const StringPiece& s, size_type pos = npos) const; + size_type find_last_not_of(char c, size_type pos = npos) const; + + StringPiece substr(size_type pos, size_type n = npos) const; + + static int wordmemcmp(const char* p, const char* p2, size_type N) { + return memcmp(p, p2, N); + } +}; + +inline bool operator==(const StringPiece& x, const StringPiece& y) { + if (x.size() != y.size()) + return false; + + return std::memcmp(x.data(), y.data(), x.size()) == 0; +} + +inline bool operator!=(const StringPiece& x, const StringPiece& y) { + return !(x == y); +} + +#endif + +inline bool operator<(const StringPiece& x, const StringPiece& y) { + const int r = std::memcmp(x.data(), y.data(), + std::min(x.size(), y.size())); + return ((r < 0) || ((r == 0) && (x.size() < y.size()))); +} + +inline bool operator>(const StringPiece& x, const StringPiece& y) { + return y < x; +} + +inline bool operator<=(const StringPiece& x, const StringPiece& y) { + return !(x > y); +} + +inline bool operator>=(const StringPiece& x, const StringPiece& y) { + return !(x < y); +} + +// allow StringPiece to be logged (needed for unit testing). +extern std::ostream& operator<<(std::ostream& o, const StringPiece& piece); + +#ifdef USE_BOOST +size_t hash_value(const StringPiece &str); + +/* Support for lookup of StringPiece in boost::unordered_map<std::string> */ +struct StringPieceCompatibleHash : public std::unary_function<const StringPiece &, size_t> { + size_t operator()(const StringPiece &str) const { + return hash_value(str); + } +}; + +struct StringPieceCompatibleEquals : public std::binary_function<const StringPiece &, const std::string &, bool> { + bool operator()(const StringPiece &first, const StringPiece &second) const { + return first == second; + } +}; +template <class T> typename T::const_iterator FindStringPiece(const T &t, const StringPiece &key) { + return t.find(key, StringPieceCompatibleHash(), StringPieceCompatibleEquals()); +} +template <class T> typename T::iterator FindStringPiece(T &t, const StringPiece &key) { + return t.find(key, StringPieceCompatibleHash(), StringPieceCompatibleEquals()); +} +#endif + +#ifdef USE_ICU +U_NAMESPACE_END +#endif + +#endif // BASE_STRING_PIECE_H__ |