fixed conflicts

18 files changed, 1284 insertions, 0 deletions

diff --git a/klm/search/Makefile.am b/klm/search/Makefile.am
new file mode 100644
index 00000000..03554276
--- /dev/null
+++ b/klm/search/Makefile.am
@@ -0,0 +1,23 @@
+noinst_LIBRARIES = libksearch.a
+
+libksearch_a_SOURCES = \
+  applied.hh \
+  config.hh \
+  context.hh \
+  dedupe.hh \
+  edge.hh \
+  edge_generator.hh \
+  header.hh \
+  nbest.hh \
+  rule.hh \
+  types.hh \
+  vertex.hh \
+  vertex_generator.hh \
+  edge_generator.cc \
+	nbest.cc \
+  rule.cc \
+  vertex.cc \
+  vertex_generator.cc
+
+AM_CPPFLAGS = -W -Wall -Wno-sign-compare -I$(top_srcdir)/klm
+
diff --git a/klm/search/applied.hh b/klm/search/applied.hh
new file mode 100644
index 00000000..bd659e5c
--- /dev/null
+++ b/klm/search/applied.hh
@@ -0,0 +1,86 @@
+#ifndef SEARCH_APPLIED__
+#define SEARCH_APPLIED__
+
+#include "search/edge.hh"
+#include "search/header.hh"
+#include "util/pool.hh"
+
+#include <math.h>
+
+namespace search {
+
+// A full hypothesis: a score, arity of the rule, a pointer to the decoder's rule (Note), and pointers to non-terminals that were substituted.  
+template <class Below> class GenericApplied : public Header {
+  public:
+    GenericApplied() {}
+
+    GenericApplied(void *location, PartialEdge partial) 
+      : Header(location) {
+      memcpy(Base(), partial.Base(), kHeaderSize);
+      Below *child_out = Children();
+      const PartialVertex *part = partial.NT();
+      const PartialVertex *const part_end_loop = part + partial.GetArity();
+      for (; part != part_end_loop; ++part, ++child_out)
+        *child_out = Below(part->End());
+    }
+    
+    GenericApplied(void *location, Score score, Arity arity, Note note) : Header(location, arity) {
+      SetScore(score);
+      SetNote(note);
+    }
+
+    explicit GenericApplied(History from) : Header(from) {}
+
+
+    // These are arrays of length GetArity().
+    Below *Children() {
+      return reinterpret_cast<Below*>(After());
+    }
+    const Below *Children() const {
+      return reinterpret_cast<const Below*>(After());
+    }
+
+    static std::size_t Size(Arity arity) {
+      return kHeaderSize + arity * sizeof(const Below);
+    }
+};
+
+// Applied rule that references itself.  
+class Applied : public GenericApplied<Applied> {
+  private:
+    typedef GenericApplied<Applied> P;
+
+  public:
+    Applied() {}
+    Applied(void *location, PartialEdge partial) : P(location, partial) {}
+    Applied(History from) : P(from) {}
+};
+
+// How to build single-best hypotheses.  
+class SingleBest {
+  public:
+    typedef PartialEdge Combine;
+
+    void Add(PartialEdge &existing, PartialEdge add) const {
+      if (!existing.Valid() || existing.GetScore() < add.GetScore())
+        existing = add;
+    }
+
+    NBestComplete Complete(PartialEdge partial) {
+      if (!partial.Valid()) 
+        return NBestComplete(NULL, lm::ngram::ChartState(), -INFINITY);
+      void *place_final = pool_.Allocate(Applied::Size(partial.GetArity()));
+      Applied(place_final, partial);
+      return NBestComplete(
+          place_final,
+          partial.CompletedState(),
+          partial.GetScore());
+    }
+
+  private:
+    util::Pool pool_;
+};
+
+} // namespace search
+
+#endif // SEARCH_APPLIED__
diff --git a/klm/search/config.hh b/klm/search/config.hh
new file mode 100644
index 00000000..ba18c09e
--- /dev/null
+++ b/klm/search/config.hh
@@ -0,0 +1,38 @@
+#ifndef SEARCH_CONFIG__
+#define SEARCH_CONFIG__
+
+#include "search/types.hh"
+
+namespace search {
+
+struct NBestConfig {
+  explicit NBestConfig(unsigned int in_size) {
+    keep = in_size;
+    size = in_size;
+  }
+  
+  unsigned int keep, size;
+};
+
+class Config {
+  public:
+    Config(Score lm_weight, unsigned int pop_limit, const NBestConfig &nbest) :
+      lm_weight_(lm_weight), pop_limit_(pop_limit), nbest_(nbest) {}
+
+    Score LMWeight() const { return lm_weight_; }
+
+    unsigned int PopLimit() const { return pop_limit_; }
+
+    const NBestConfig &GetNBest() const { return nbest_; }
+
+  private:
+    Score lm_weight_;
+
+    unsigned int pop_limit_;
+
+    NBestConfig nbest_;
+};
+
+} // namespace search
+
+#endif // SEARCH_CONFIG__
diff --git a/klm/search/context.hh b/klm/search/context.hh
new file mode 100644
index 00000000..08f21bbf
--- /dev/null
+++ b/klm/search/context.hh
@@ -0,0 +1,49 @@
+#ifndef SEARCH_CONTEXT__
+#define SEARCH_CONTEXT__
+
+#include "search/config.hh"
+#include "search/vertex.hh"
+
+#include <boost/pool/object_pool.hpp>
+
+namespace search {
+
+class ContextBase {
+  public:
+    explicit ContextBase(const Config &config) : config_(config) {}
+
+    VertexNode *NewVertexNode() {
+      VertexNode *ret = vertex_node_pool_.construct();
+      assert(ret);
+      return ret;
+    }
+
+    void DeleteVertexNode(VertexNode *node) {
+      vertex_node_pool_.destroy(node);
+    }
+
+    unsigned int PopLimit() const { return config_.PopLimit(); }
+
+    Score LMWeight() const { return config_.LMWeight(); }
+
+    const Config &GetConfig() const { return config_; }
+
+  private:
+    boost::object_pool<VertexNode> vertex_node_pool_;
+
+    Config config_;
+};
+
+template <class Model> class Context : public ContextBase {
+  public:
+    Context(const Config &config, const Model &model) : ContextBase(config), model_(model) {}
+
+    const Model &LanguageModel() const { return model_; }
+
+  private:
+    const Model &model_;
+};
+
+} // namespace search
+
+#endif // SEARCH_CONTEXT__
diff --git a/klm/search/dedupe.hh b/klm/search/dedupe.hh
new file mode 100644
index 00000000..7eaa3b95
--- /dev/null
+++ b/klm/search/dedupe.hh
@@ -0,0 +1,131 @@
+#ifndef SEARCH_DEDUPE__
+#define SEARCH_DEDUPE__
+
+#include "lm/state.hh"
+#include "search/edge_generator.hh"
+
+#include <boost/pool/object_pool.hpp>
+#include <boost/unordered_map.hpp>
+
+namespace search {
+
+class Dedupe {
+  public:
+    Dedupe() {}
+
+    PartialEdge AllocateEdge(Arity arity) {
+      return behind_.AllocateEdge(arity);
+    }
+
+    void AddEdge(PartialEdge edge) {
+      edge.MutableFlags() = 0;
+
+      uint64_t hash = 0;
+      const PartialVertex *v = edge.NT();
+      const PartialVertex *v_end = v + edge.GetArity();
+      for (; v != v_end; ++v) {
+        const void *ptr = v->Identify();
+        hash = util::MurmurHashNative(&ptr, sizeof(const void*), hash);
+      }
+      
+      const lm::ngram::ChartState *c = edge.Between();
+      const lm::ngram::ChartState *const c_end = c + edge.GetArity() + 1;
+      for (; c != c_end; ++c) hash = hash_value(*c, hash);
+
+      std::pair<Table::iterator, bool> ret(table_.insert(std::make_pair(hash, edge)));
+      if (!ret.second) FoundDupe(ret.first->second, edge);
+    }
+
+    bool Empty() const { return behind_.Empty(); }
+
+    template <class Model, class Output> void Search(Context<Model> &context, Output &output) {
+      for (Table::const_iterator i(table_.begin()); i != table_.end(); ++i) {
+        behind_.AddEdge(i->second);
+      }
+      Unpack<Output> unpack(output, *this);
+      behind_.Search(context, unpack);
+    }
+
+  private:
+    void FoundDupe(PartialEdge &table, PartialEdge adding) {
+      if (table.GetFlags() & kPackedFlag) {
+        Packed &packed = *static_cast<Packed*>(table.GetNote().mut);
+        if (table.GetScore() >= adding.GetScore()) {
+          packed.others.push_back(adding);
+          return;
+        }
+        Note original(packed.original);
+        packed.original = adding.GetNote();
+        adding.SetNote(table.GetNote());
+        table.SetNote(original);
+        packed.others.push_back(table);
+        packed.starting = adding.GetScore();
+        table = adding;
+        table.MutableFlags() |= kPackedFlag;
+        return;
+      }
+      PartialEdge loser;
+      if (adding.GetScore() > table.GetScore()) {
+        loser = table;
+        table = adding;
+      } else {
+        loser = adding;
+      }
+      // table is winner, loser is loser...
+      packed_.construct(table, loser);
+    }
+
+    struct Packed {
+      Packed(PartialEdge winner, PartialEdge loser) 
+        : original(winner.GetNote()), starting(winner.GetScore()), others(1, loser) {
+        winner.MutableNote().vp = this;
+        winner.MutableFlags() |= kPackedFlag;
+        loser.MutableFlags() &= ~kPackedFlag;
+      }
+      Note original;
+      Score starting;
+      std::vector<PartialEdge> others;
+    };
+
+    template <class Output> class Unpack {
+      public:
+        explicit Unpack(Output &output, Dedupe &owner) : output_(output), owner_(owner) {}
+
+        void NewHypothesis(PartialEdge edge) {
+          if (edge.GetFlags() & kPackedFlag) {
+            Packed &packed = *reinterpret_cast<Packed*>(edge.GetNote().mut);
+            edge.SetNote(packed.original);
+            edge.MutableFlags() = 0;
+            std::size_t copy_size = sizeof(PartialVertex) * edge.GetArity() + sizeof(lm::ngram::ChartState);
+            for (std::vector<PartialEdge>::iterator i = packed.others.begin(); i != packed.others.end(); ++i) {
+              PartialEdge copy(owner_.AllocateEdge(edge.GetArity()));
+              copy.SetScore(edge.GetScore() - packed.starting + i->GetScore());
+              copy.MutableFlags() = 0;
+              copy.SetNote(i->GetNote());
+              memcpy(copy.NT(), edge.NT(), copy_size);
+              output_.NewHypothesis(copy);
+            }
+          }
+          output_.NewHypothesis(edge);
+        }
+
+        void FinishedSearch() {
+          output_.FinishedSearch();
+        }
+
+      private:
+        Output &output_;
+        Dedupe &owner_;
+    };
+
+    EdgeGenerator behind_;
+
+    typedef boost::unordered_map<uint64_t, PartialEdge> Table;
+    Table table_;
+
+    boost::object_pool<Packed> packed_;
+
+    static const uint16_t kPackedFlag = 1;
+};
+} // namespace search
+#endif // SEARCH_DEDUPE__
diff --git a/klm/search/edge.hh b/klm/search/edge.hh
new file mode 100644
index 00000000..187904bf
--- /dev/null
+++ b/klm/search/edge.hh
@@ -0,0 +1,54 @@
+#ifndef SEARCH_EDGE__
+#define SEARCH_EDGE__
+
+#include "lm/state.hh"
+#include "search/header.hh"
+#include "search/types.hh"
+#include "search/vertex.hh"
+#include "util/pool.hh"
+
+#include <functional>
+
+#include <stdint.h>
+
+namespace search {
+
+// Copyable, but the copy will be shallow.
+class PartialEdge : public Header {
+  public:
+    // Allow default construction for STL.  
+    PartialEdge() {}
+
+    PartialEdge(util::Pool &pool, Arity arity) 
+      : Header(pool.Allocate(Size(arity, arity + 1)), arity) {}
+    
+    PartialEdge(util::Pool &pool, Arity arity, Arity chart_states) 
+      : Header(pool.Allocate(Size(arity, chart_states)), arity) {}
+
+    // Non-terminals
+    const PartialVertex *NT() const {
+      return reinterpret_cast<const PartialVertex*>(After());
+    }
+    PartialVertex *NT() {
+      return reinterpret_cast<PartialVertex*>(After());
+    }
+
+    const lm::ngram::ChartState &CompletedState() const {
+      return *Between();
+    }
+    const lm::ngram::ChartState *Between() const {
+      return reinterpret_cast<const lm::ngram::ChartState*>(After() + GetArity() * sizeof(PartialVertex));
+    }
+    lm::ngram::ChartState *Between() {
+      return reinterpret_cast<lm::ngram::ChartState*>(After() + GetArity() * sizeof(PartialVertex));
+    }
+
+  private:
+    static std::size_t Size(Arity arity, Arity chart_states) {
+      return kHeaderSize + arity * sizeof(PartialVertex) + chart_states * sizeof(lm::ngram::ChartState);
+    }
+};
+
+
+} // namespace search
+#endif // SEARCH_EDGE__
diff --git a/klm/search/edge_generator.cc b/klm/search/edge_generator.cc
new file mode 100644
index 00000000..eacf5de5
--- /dev/null
+++ b/klm/search/edge_generator.cc
@@ -0,0 +1,111 @@
+#include "search/edge_generator.hh"
+
+#include "lm/left.hh"
+#include "lm/model.hh"
+#include "lm/partial.hh"
+#include "search/context.hh"
+#include "search/vertex.hh"
+
+#include <numeric>
+
+namespace search {
+
+namespace {
+
+template <class Model> void FastScore(const Context<Model> &context, Arity victim, Arity before_idx, Arity incomplete, const PartialVertex &previous_vertex, PartialEdge update) {
+  lm::ngram::ChartState *between = update.Between();
+  lm::ngram::ChartState *before = &between[before_idx], *after = &between[before_idx + 1];
+
+  float adjustment = 0.0;
+  const lm::ngram::ChartState &previous_reveal = previous_vertex.State();
+  const PartialVertex &update_nt = update.NT()[victim];
+  const lm::ngram::ChartState &update_reveal = update_nt.State();
+  if ((update_reveal.left.length > previous_reveal.left.length) || (update_reveal.left.full && !previous_reveal.left.full)) {
+    adjustment += lm::ngram::RevealAfter(context.LanguageModel(), before->left, before->right, update_reveal.left, previous_reveal.left.length);
+  }
+  if ((update_reveal.right.length > previous_reveal.right.length) || (update_nt.RightFull() && !previous_vertex.RightFull())) {
+    adjustment += lm::ngram::RevealBefore(context.LanguageModel(), update_reveal.right, previous_reveal.right.length, update_nt.RightFull(), after->left, after->right);
+  }
+  if (update_nt.Complete()) {
+    if (update_reveal.left.full) {
+      before->left.full = true;
+    } else {
+      assert(update_reveal.left.length == update_reveal.right.length);
+      adjustment += lm::ngram::Subsume(context.LanguageModel(), before->left, before->right, after->left, after->right, update_reveal.left.length);
+    }
+    before->right = after->right;
+    // Shift the others shifted one down, covering after.  
+    for (lm::ngram::ChartState *cover = after; cover < between + incomplete; ++cover) {
+      *cover = *(cover + 1);
+    }
+  }
+  update.SetScore(update.GetScore() + adjustment * context.LMWeight());
+}
+
+} // namespace
+
+template <class Model> PartialEdge EdgeGenerator::Pop(Context<Model> &context) {
+  assert(!generate_.empty());
+  PartialEdge top = generate_.top();
+  generate_.pop();
+  PartialVertex *const top_nt = top.NT();
+  const Arity arity = top.GetArity();
+
+  Arity victim = 0;
+  Arity victim_completed;
+  Arity incomplete;
+  // Select victim or return if complete.   
+  {
+    Arity completed = 0;
+    unsigned char lowest_length = 255;
+    for (Arity i = 0; i != arity; ++i) {
+      if (top_nt[i].Complete()) {
+        ++completed;
+      } else if (top_nt[i].Length() < lowest_length) {
+        lowest_length = top_nt[i].Length();
+        victim = i;
+        victim_completed = completed;
+      }
+    }
+    if (lowest_length == 255) {
+      return top;
+    }
+    incomplete = arity - completed;
+  }
+
+  PartialVertex old_value(top_nt[victim]);
+  PartialVertex alternate_changed;
+  if (top_nt[victim].Split(alternate_changed)) {
+    PartialEdge alternate(partial_edge_pool_, arity, incomplete + 1);
+    alternate.SetScore(top.GetScore() + alternate_changed.Bound() - old_value.Bound());
+
+    alternate.SetNote(top.GetNote());
+
+    PartialVertex *alternate_nt = alternate.NT();
+    for (Arity i = 0; i < victim; ++i) alternate_nt[i] = top_nt[i];
+    alternate_nt[victim] = alternate_changed;
+    for (Arity i = victim + 1; i < arity; ++i) alternate_nt[i] = top_nt[i];
+
+    memcpy(alternate.Between(), top.Between(), sizeof(lm::ngram::ChartState) * (incomplete + 1));
+
+    // TODO: dedupe?  
+    generate_.push(alternate);
+  }
+
+  // top is now the continuation.
+  FastScore(context, victim, victim - victim_completed, incomplete, old_value, top);
+  // TODO: dedupe?  
+  generate_.push(top);
+
+  // Invalid indicates no new hypothesis generated.  
+  return PartialEdge();
+}
+
+template PartialEdge EdgeGenerator::Pop(Context<lm::ngram::RestProbingModel> &context);
+template PartialEdge EdgeGenerator::Pop(Context<lm::ngram::ProbingModel> &context);
+template PartialEdge EdgeGenerator::Pop(Context<lm::ngram::TrieModel> &context);
+template PartialEdge EdgeGenerator::Pop(Context<lm::ngram::QuantTrieModel> &context);
+template PartialEdge EdgeGenerator::Pop(Context<lm::ngram::ArrayTrieModel> &context);
+template PartialEdge EdgeGenerator::Pop(Context<lm::ngram::QuantArrayTrieModel> &context);
+
+} // namespace search
diff --git a/klm/search/edge_generator.hh b/klm/search/edge_generator.hh
new file mode 100644
index 00000000..203942c6
--- /dev/null
+++ b/klm/search/edge_generator.hh
@@ -0,0 +1,56 @@
+#ifndef SEARCH_EDGE_GENERATOR__
+#define SEARCH_EDGE_GENERATOR__
+
+#include "search/edge.hh"
+#include "search/types.hh"
+
+#include <queue>
+
+namespace lm {
+namespace ngram {
+class ChartState;
+} // namespace ngram
+} // namespace lm
+
+namespace search {
+
+template <class Model> class Context;
+
+class EdgeGenerator {
+  public:
+    EdgeGenerator() {}
+
+    PartialEdge AllocateEdge(Arity arity) {
+      return PartialEdge(partial_edge_pool_, arity);
+    }
+
+    void AddEdge(PartialEdge edge) {
+      generate_.push(edge);
+    }
+
+    bool Empty() const { return generate_.empty(); }
+
+    // Pop.  If there's a complete hypothesis, return it.  Otherwise return an invalid PartialEdge.
+    template <class Model> PartialEdge Pop(Context<Model> &context);
+
+    template <class Model, class Output> void Search(Context<Model> &context, Output &output) {
+      unsigned to_pop = context.PopLimit();
+      while (to_pop > 0 && !generate_.empty()) {
+        PartialEdge got(Pop(context));
+        if (got.Valid()) {
+          output.NewHypothesis(got);
+          --to_pop;
+        }
+      }
+      output.FinishedSearch();
+    }
+
+  private:
+    util::Pool partial_edge_pool_;
+
+    typedef std::priority_queue<PartialEdge> Generate;
+    Generate generate_;
+};
+
+} // namespace search
+#endif // SEARCH_EDGE_GENERATOR__
diff --git a/klm/search/header.hh b/klm/search/header.hh
new file mode 100644
index 00000000..69f0eed0
--- /dev/null
+++ b/klm/search/header.hh
@@ -0,0 +1,64 @@
+#ifndef SEARCH_HEADER__
+#define SEARCH_HEADER__
+
+// Header consisting of Score, Arity, and Note
+
+#include "search/types.hh"
+
+#include <stdint.h>
+
+namespace search {
+
+// Copying is shallow.  
+class Header {
+  public:
+    bool Valid() const { return base_; }
+
+    Score GetScore() const {
+      return *reinterpret_cast<const float*>(base_);
+    }
+    void SetScore(Score to) {
+      *reinterpret_cast<float*>(base_) = to;
+    }
+    bool operator<(const Header &other) const {
+      return GetScore() < other.GetScore();
+    }
+    bool operator>(const Header &other) const {
+      return GetScore() > other.GetScore();
+    }
+
+    Arity GetArity() const {
+      return *reinterpret_cast<const Arity*>(base_ + sizeof(Score));
+    }
+
+    Note GetNote() const {
+      return *reinterpret_cast<const Note*>(base_ + sizeof(Score) + sizeof(Arity));
+    }
+    void SetNote(Note to) {
+      *reinterpret_cast<Note*>(base_ + sizeof(Score) + sizeof(Arity)) = to;
+    }
+
+    uint8_t *Base() { return base_; }
+    const uint8_t *Base() const { return base_; }
+
+  protected:
+    Header() : base_(NULL) {}
+
+    explicit Header(void *base) : base_(static_cast<uint8_t*>(base)) {}
+
+    Header(void *base, Arity arity) : base_(static_cast<uint8_t*>(base)) {
+      *reinterpret_cast<Arity*>(base_ + sizeof(Score)) = arity;
+    }
+
+    static const std::size_t kHeaderSize = sizeof(Score) + sizeof(Arity) + sizeof(Note);
+
+    uint8_t *After() { return base_ + kHeaderSize; }
+    const uint8_t *After() const { return base_ + kHeaderSize; }
+
+  private:
+    uint8_t *base_;
+};
+
+} // namespace search
+
+#endif // SEARCH_HEADER__
diff --git a/klm/search/nbest.cc b/klm/search/nbest.cc
new file mode 100644
index 00000000..ec3322c9
--- /dev/null
+++ b/klm/search/nbest.cc
@@ -0,0 +1,106 @@
+#include "search/nbest.hh"
+
+#include "util/pool.hh"
+
+#include <algorithm>
+#include <functional>
+#include <queue>
+
+#include <assert.h>
+#include <math.h>
+
+namespace search {
+
+NBestList::NBestList(std::vector<PartialEdge> &partials, util::Pool &entry_pool, std::size_t keep) {
+  assert(!partials.empty());
+  std::vector<PartialEdge>::iterator end;
+  if (partials.size() > keep) {
+    end = partials.begin() + keep;
+    std::nth_element(partials.begin(), end, partials.end(), std::greater<PartialEdge>());
+  } else {
+    end = partials.end();
+  }
+  for (std::vector<PartialEdge>::const_iterator i(partials.begin()); i != end; ++i) {
+    queue_.push(QueueEntry(entry_pool.Allocate(QueueEntry::Size(i->GetArity())), *i));
+  }
+}
+
+Score NBestList::TopAfterConstructor() const {
+  assert(revealed_.empty());
+  return queue_.top().GetScore();
+}
+
+const std::vector<Applied> &NBestList::Extract(util::Pool &pool, std::size_t n) {
+  while (revealed_.size() < n && !queue_.empty()) {
+    MoveTop(pool);
+  }
+  return revealed_;
+}
+
+Score NBestList::Visit(util::Pool &pool, std::size_t index) {
+  if (index + 1 < revealed_.size())
+    return revealed_[index + 1].GetScore() - revealed_[index].GetScore();
+  if (queue_.empty()) 
+    return -INFINITY;
+  if (index + 1 == revealed_.size())
+    return queue_.top().GetScore() - revealed_[index].GetScore();
+  assert(index == revealed_.size());
+
+  MoveTop(pool);
+
+  if (queue_.empty()) return -INFINITY;
+  return queue_.top().GetScore() - revealed_[index].GetScore();
+}
+
+Applied NBestList::Get(util::Pool &pool, std::size_t index) {
+  assert(index <= revealed_.size());
+  if (index == revealed_.size()) MoveTop(pool);
+  return revealed_[index];
+}
+
+void NBestList::MoveTop(util::Pool &pool) {
+  assert(!queue_.empty());
+  QueueEntry entry(queue_.top());
+  queue_.pop();
+  RevealedRef *const children_begin = entry.Children();
+  RevealedRef *const children_end = children_begin + entry.GetArity();
+  Score basis = entry.GetScore();
+  for (RevealedRef *child = children_begin; child != children_end; ++child) {
+    Score change = child->in_->Visit(pool, child->index_);
+    if (change != -INFINITY) {
+      assert(change < 0.001);
+      QueueEntry new_entry(pool.Allocate(QueueEntry::Size(entry.GetArity())), basis + change, entry.GetArity(), entry.GetNote());
+      std::copy(children_begin, child, new_entry.Children());
+      RevealedRef *update = new_entry.Children() + (child - children_begin);
+      update->in_ = child->in_;
+      update->index_ = child->index_ + 1;
+      std::copy(child + 1, children_end, update + 1);
+      queue_.push(new_entry);
+    }
+    // Gesmundo, A. and Henderson, J. Faster Cube Pruning, IWSLT 2010.
+    if (child->index_) break;
+  }
+
+  // Convert QueueEntry to Applied.  This leaves some unused memory.  
+  void *overwrite = entry.Children();
+  for (unsigned int i = 0; i < entry.GetArity(); ++i) {
+    RevealedRef from(*(static_cast<const RevealedRef*>(overwrite) + i));
+    *(static_cast<Applied*>(overwrite) + i) = from.in_->Get(pool, from.index_);
+  }
+  revealed_.push_back(Applied(entry.Base()));
+}
+
+NBestComplete NBest::Complete(std::vector<PartialEdge> &partials) {
+  assert(!partials.empty());
+  NBestList *list = list_pool_.construct(partials, entry_pool_, config_.keep);
+  return NBestComplete(
+      list,
+      partials.front().CompletedState(), // All partials have the same state
+      list->TopAfterConstructor());
+}
+
+const std::vector<Applied> &NBest::Extract(History history) {
+  return static_cast<NBestList*>(history)->Extract(entry_pool_, config_.size);
+}
+
+} // namespace search
diff --git a/klm/search/nbest.hh b/klm/search/nbest.hh
new file mode 100644
index 00000000..cb7651bc
--- /dev/null
+++ b/klm/search/nbest.hh
@@ -0,0 +1,81 @@
+#ifndef SEARCH_NBEST__
+#define SEARCH_NBEST__
+
+#include "search/applied.hh"
+#include "search/config.hh"
+#include "search/edge.hh"
+
+#include <boost/pool/object_pool.hpp>
+
+#include <cstddef>
+#include <queue>
+#include <vector>
+
+#include <assert.h>
+
+namespace search {
+
+class NBestList;
+
+class NBestList {
+  private:
+    class RevealedRef {
+      public: 
+        explicit RevealedRef(History history) 
+          : in_(static_cast<NBestList*>(history)), index_(0) {}
+
+      private:
+        friend class NBestList;
+
+        NBestList *in_;
+        std::size_t index_;
+    };
+    
+    typedef GenericApplied<RevealedRef> QueueEntry;
+
+  public:
+    NBestList(std::vector<PartialEdge> &existing, util::Pool &entry_pool, std::size_t keep);
+
+    Score TopAfterConstructor() const;
+
+    const std::vector<Applied> &Extract(util::Pool &pool, std::size_t n);
+
+  private:
+    Score Visit(util::Pool &pool, std::size_t index);
+
+    Applied Get(util::Pool &pool, std::size_t index);
+
+    void MoveTop(util::Pool &pool);
+
+    typedef std::vector<Applied> Revealed;
+    Revealed revealed_;
+
+    typedef std::priority_queue<QueueEntry> Queue;
+    Queue queue_;
+};
+
+class NBest {
+  public:
+    typedef std::vector<PartialEdge> Combine;
+
+    explicit NBest(const NBestConfig &config) : config_(config) {}
+
+    void Add(std::vector<PartialEdge> &existing, PartialEdge addition) const {
+      existing.push_back(addition);
+    }
+
+    NBestComplete Complete(std::vector<PartialEdge> &partials);
+
+    const std::vector<Applied> &Extract(History root);
+
+  private:
+    const NBestConfig config_;
+
+    boost::object_pool<NBestList> list_pool_;
+
+    util::Pool entry_pool_;
+};
+
+} // namespace search
+
+#endif // SEARCH_NBEST__
diff --git a/klm/search/rule.cc b/klm/search/rule.cc
new file mode 100644
index 00000000..0244a09f
--- /dev/null
+++ b/klm/search/rule.cc
@@ -0,0 +1,43 @@
+#include "search/rule.hh"
+
+#include "lm/model.hh"
+#include "search/context.hh"
+
+#include <ostream>
+
+#include <math.h>
+
+namespace search {
+
+template <class Model> ScoreRuleRet ScoreRule(const Model &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *writing) {
+  ScoreRuleRet ret;
+  ret.prob = 0.0;
+  ret.oov = 0;
+  const lm::WordIndex oov = model.GetVocabulary().NotFound(), bos = model.GetVocabulary().BeginSentence();
+  lm::ngram::RuleScore<Model> scorer(model, *(writing++));
+  std::vector<lm::WordIndex>::const_iterator word = words.begin();
+  if (word != words.end() && *word == bos) {
+    scorer.BeginSentence();
+    ++word;
+  }
+  for (; word != words.end(); ++word) {
+    if (*word == kNonTerminal) {
+      ret.prob += scorer.Finish();
+      scorer.Reset(*(writing++));
+    } else {
+      if (*word == oov) ++ret.oov;
+      scorer.Terminal(*word);
+    }
+  }
+  ret.prob += scorer.Finish();
+  return ret;
+}
+
+template ScoreRuleRet ScoreRule(const lm::ngram::RestProbingModel &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *writing);
+template ScoreRuleRet ScoreRule(const lm::ngram::ProbingModel &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *writing);
+template ScoreRuleRet ScoreRule(const lm::ngram::TrieModel &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *writing);
+template ScoreRuleRet ScoreRule(const lm::ngram::QuantTrieModel &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *writing);
+template ScoreRuleRet ScoreRule(const lm::ngram::ArrayTrieModel &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *writing);
+template ScoreRuleRet ScoreRule(const lm::ngram::QuantArrayTrieModel &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *writing);
+
+} // namespace search
diff --git a/klm/search/rule.hh b/klm/search/rule.hh
new file mode 100644
index 00000000..43ca6162
--- /dev/null
+++ b/klm/search/rule.hh
@@ -0,0 +1,25 @@
+#ifndef SEARCH_RULE__
+#define SEARCH_RULE__
+
+#include "lm/left.hh"
+#include "lm/word_index.hh"
+#include "search/types.hh"
+
+#include <vector>
+
+namespace search {
+
+const lm::WordIndex kNonTerminal = lm::kMaxWordIndex;
+
+struct ScoreRuleRet {
+  Score prob;
+  unsigned int oov;
+};
+
+// Pass <s> and </s> normally.  
+// Indicate non-terminals with kNonTerminal.  
+template <class Model> ScoreRuleRet ScoreRule(const Model &model, const std::vector<lm::WordIndex> &words, lm::ngram::ChartState *state_out);
+
+} // namespace search
+
+#endif // SEARCH_RULE__
diff --git a/klm/search/types.hh b/klm/search/types.hh
new file mode 100644
index 00000000..f9c849b3
--- /dev/null
+++ b/klm/search/types.hh
@@ -0,0 +1,31 @@
+#ifndef SEARCH_TYPES__
+#define SEARCH_TYPES__
+
+#include <stdint.h>
+
+namespace lm { namespace ngram { class ChartState; } }
+
+namespace search {
+
+typedef float Score;
+
+typedef uint32_t Arity;
+
+union Note {
+  const void *vp;
+};
+
+typedef void *History;
+
+struct NBestComplete {
+  NBestComplete(History in_history, const lm::ngram::ChartState &in_state, Score in_score) 
+    : history(in_history), state(&in_state), score(in_score) {}
+
+  History history;
+  const lm::ngram::ChartState *state;
+  Score score;
+};
+
+} // namespace search
+
+#endif // SEARCH_TYPES__
diff --git a/klm/search/vertex.cc b/klm/search/vertex.cc
new file mode 100644
index 00000000..45842982
--- /dev/null
+++ b/klm/search/vertex.cc
@@ -0,0 +1,55 @@
+#include "search/vertex.hh"
+
+#include "search/context.hh"
+
+#include <algorithm>
+#include <functional>
+
+#include <assert.h>
+
+namespace search {
+
+namespace {
+
+struct GreaterByBound : public std::binary_function<const VertexNode *, const VertexNode *, bool> {
+  bool operator()(const VertexNode *first, const VertexNode *second) const {
+    return first->Bound() > second->Bound();
+  }
+};
+
+} // namespace
+
+void VertexNode::RecursiveSortAndSet(ContextBase &context, VertexNode *&parent_ptr) {
+  if (Complete()) {
+    assert(end_);
+    assert(extend_.empty());
+    return;
+  }
+  if (extend_.size() == 1) {
+    parent_ptr = extend_[0];
+    extend_[0]->RecursiveSortAndSet(context, parent_ptr);
+    context.DeleteVertexNode(this);
+    return;
+  }
+  for (std::vector<VertexNode*>::iterator i = extend_.begin(); i != extend_.end(); ++i) {
+    (*i)->RecursiveSortAndSet(context, *i);
+  }
+  std::sort(extend_.begin(), extend_.end(), GreaterByBound());
+  bound_ = extend_.front()->Bound();
+}
+
+void VertexNode::SortAndSet(ContextBase &context) {
+  // This is the root.  The root might be empty.  
+  if (extend_.empty()) {
+    bound_ = -INFINITY;
+    return;
+  }
+  // The root cannot be replaced.  There's always one transition.  
+  for (std::vector<VertexNode*>::iterator i = extend_.begin(); i != extend_.end(); ++i) {
+    (*i)->RecursiveSortAndSet(context, *i);
+  }
+  std::sort(extend_.begin(), extend_.end(), GreaterByBound());
+  bound_ = extend_.front()->Bound();
+}
+
+} // namespace search
diff --git a/klm/search/vertex.hh b/klm/search/vertex.hh
new file mode 100644
index 00000000..ca9a4fcd
--- /dev/null
+++ b/klm/search/vertex.hh
@@ -0,0 +1,164 @@
+#ifndef SEARCH_VERTEX__
+#define SEARCH_VERTEX__
+
+#include "lm/left.hh"
+#include "search/types.hh"
+
+#include <boost/unordered_set.hpp>
+
+#include <queue>
+#include <vector>
+
+#include <math.h>
+#include <stdint.h>
+
+namespace search {
+
+class ContextBase;
+
+class VertexNode {
+  public:
+    VertexNode() : end_() {}
+
+    void InitRoot() {
+      extend_.clear();
+      state_.left.full = false;
+      state_.left.length = 0;
+      state_.right.length = 0;
+      right_full_ = false;
+      end_ = History();
+    }
+
+    lm::ngram::ChartState &MutableState() { return state_; }
+    bool &MutableRightFull() { return right_full_; }
+
+    void AddExtend(VertexNode *next) {
+      extend_.push_back(next);
+    }
+
+    void SetEnd(History end, Score score) {
+      assert(!end_);
+      end_ = end;
+      bound_ = score;
+    }
+    
+    void SortAndSet(ContextBase &context);
+
+    // Should only happen to a root node when the entire vertex is empty.   
+    bool Empty() const {
+      return !end_ && extend_.empty();
+    }
+
+    bool Complete() const {
+      return end_;
+    }
+
+    const lm::ngram::ChartState &State() const { return state_; }
+    bool RightFull() const { return right_full_; }
+
+    Score Bound() const {
+      return bound_;
+    }
+
+    unsigned char Length() const {
+      return state_.left.length + state_.right.length;
+    }
+
+    // Will be invalid unless this is a leaf.   
+    History End() const { return end_; }
+
+    const VertexNode &operator[](size_t index) const {
+      return *extend_[index];
+    }
+
+    size_t Size() const {
+      return extend_.size();
+    }
+
+  private:
+    void RecursiveSortAndSet(ContextBase &context, VertexNode *&parent);
+
+    std::vector<VertexNode*> extend_;
+
+    lm::ngram::ChartState state_;
+    bool right_full_;
+
+    Score bound_;
+    History end_;
+};
+
+class PartialVertex {
+  public:
+    PartialVertex() {}
+
+    explicit PartialVertex(const VertexNode &back) : back_(&back), index_(0) {}
+
+    bool Empty() const { return back_->Empty(); }
+
+    bool Complete() const { return back_->Complete(); }
+
+    const lm::ngram::ChartState &State() const { return back_->State(); }
+    bool RightFull() const { return back_->RightFull(); }
+
+    Score Bound() const { return Complete() ? back_->Bound() : (*back_)[index_].Bound(); }
+
+    unsigned char Length() const { return back_->Length(); }
+
+    bool HasAlternative() const {
+      return index_ + 1 < back_->Size();
+    }
+
+    // Split into continuation and alternative, rendering this the continuation.
+    bool Split(PartialVertex &alternative) {
+      assert(!Complete());
+      bool ret;
+      if (index_ + 1 < back_->Size()) {
+        alternative.index_ = index_ + 1;
+        alternative.back_ = back_;
+        ret = true;
+      } else {
+        ret = false;
+      }
+      back_ = &((*back_)[index_]);
+      index_ = 0;
+      return ret;
+    }
+
+    History End() const {
+      return back_->End();
+    }
+
+  private:
+    const VertexNode *back_;
+    unsigned int index_;
+};
+
+template <class Output> class VertexGenerator;
+
+class Vertex {
+  public:
+    Vertex() {}
+
+    PartialVertex RootPartial() const { return PartialVertex(root_); }
+
+    History BestChild() const {
+      PartialVertex top(RootPartial());
+      if (top.Empty()) {
+        return History();
+      } else {
+        PartialVertex continuation;
+        while (!top.Complete()) {
+          top.Split(continuation);
+        }
+        return top.End();
+      }
+    }
+
+  private:
+    template <class Output> friend class VertexGenerator;
+    template <class Output> friend class RootVertexGenerator;
+    VertexNode root_;
+};
+
+} // namespace search
+#endif // SEARCH_VERTEX__
diff --git a/klm/search/vertex_generator.cc b/klm/search/vertex_generator.cc
new file mode 100644
index 00000000..73139ffc
--- /dev/null
+++ b/klm/search/vertex_generator.cc
@@ -0,0 +1,68 @@
+#include "search/vertex_generator.hh"
+
+#include "lm/left.hh"
+#include "search/context.hh"
+#include "search/edge.hh"
+
+#include <boost/unordered_map.hpp>
+#include <boost/version.hpp>
+
+#include <stdint.h>
+
+namespace search {
+
+#if BOOST_VERSION > 104200
+namespace {
+
+const uint64_t kCompleteAdd = static_cast<uint64_t>(-1);
+
+Trie &FindOrInsert(ContextBase &context, Trie &node, uint64_t added, const lm::ngram::ChartState &state, unsigned char left, bool left_full, unsigned char right, bool right_full) {
+  Trie &next = node.extend[added];
+  if (!next.under) {
+    next.under = context.NewVertexNode();
+    lm::ngram::ChartState &writing = next.under->MutableState();
+    writing = state;
+    writing.left.full &= left_full && state.left.full;
+    next.under->MutableRightFull() = right_full && state.left.full;
+    writing.left.length = left;
+    writing.right.length = right;
+    node.under->AddExtend(next.under);
+  }
+  return next;
+}
+
+} // namespace
+
+void AddHypothesis(ContextBase &context, Trie &root, const NBestComplete &end) {
+  const lm::ngram::ChartState &state = *end.state;
+  
+  unsigned char left = 0, right = 0;
+  Trie *node = &root;
+  while (true) {
+    if (left == state.left.length) {
+      node = &FindOrInsert(context, *node, kCompleteAdd - state.left.full, state, left, true, right, false);
+      for (; right < state.right.length; ++right) {
+        node = &FindOrInsert(context, *node, state.right.words[right], state, left, true, right + 1, false);
+      }
+      break;
+    }
+    node = &FindOrInsert(context, *node, state.left.pointers[left], state, left + 1, false, right, false);
+    left++;
+    if (right == state.right.length) {
+      node = &FindOrInsert(context, *node, kCompleteAdd - state.left.full, state, left, false, right, true);
+      for (; left < state.left.length; ++left) {
+        node = &FindOrInsert(context, *node, state.left.pointers[left], state, left + 1, false, right, true);
+      }
+      break;
+    }
+    node = &FindOrInsert(context, *node, state.right.words[right], state, left, false, right + 1, false);
+    right++;
+  }
+
+  node = &FindOrInsert(context, *node, kCompleteAdd - state.left.full, state, state.left.length, true, state.right.length, true);
+  node->under->SetEnd(end.history, end.score);
+}
+
+#endif // BOOST_VERSION
+
+} // namespace search
diff --git a/klm/search/vertex_generator.hh b/klm/search/vertex_generator.hh
new file mode 100644
index 00000000..646b8189
--- /dev/null
+++ b/klm/search/vertex_generator.hh
@@ -0,0 +1,99 @@
+#ifndef SEARCH_VERTEX_GENERATOR__
+#define SEARCH_VERTEX_GENERATOR__
+
+#include "search/edge.hh"
+#include "search/types.hh"
+#include "search/vertex.hh"
+#include "util/exception.hh"
+
+#include <boost/unordered_map.hpp>
+#include <boost/version.hpp>
+
+namespace lm {
+namespace ngram {
+class ChartState;
+} // namespace ngram
+} // namespace lm
+
+namespace search {
+
+class ContextBase;
+
+#if BOOST_VERSION > 104200
+// Parallel structure to VertexNode.  
+struct Trie {
+  Trie() : under(NULL) {}
+
+  VertexNode *under;
+  boost::unordered_map<uint64_t, Trie> extend;
+};
+
+void AddHypothesis(ContextBase &context, Trie &root, const NBestComplete &end);
+
+#endif // BOOST_VERSION
+
+// Output makes the single-best or n-best list.   
+template <class Output> class VertexGenerator {
+  public:
+    VertexGenerator(ContextBase &context, Vertex &gen, Output &nbest) : context_(context), gen_(gen), nbest_(nbest) {
+      gen.root_.InitRoot();
+    }
+
+    void NewHypothesis(PartialEdge partial) {
+      nbest_.Add(existing_[hash_value(partial.CompletedState())], partial);
+    }
+
+    void FinishedSearch() {
+#if BOOST_VERSION > 104200
+      Trie root;
+      root.under = &gen_.root_;
+      for (typename Existing::iterator i(existing_.begin()); i != existing_.end(); ++i) {
+        AddHypothesis(context_, root, nbest_.Complete(i->second));
+      }
+      existing_.clear();
+      root.under->SortAndSet(context_);
+#else
+      UTIL_THROW(util::Exception, "Upgrade Boost to >= 1.42.0 to use incremental search.");
+#endif
+    }
+
+    const Vertex &Generating() const { return gen_; }
+
+  private:
+    ContextBase &context_;
+
+    Vertex &gen_;
+
+    typedef boost::unordered_map<uint64_t, typename Output::Combine> Existing;
+    Existing existing_;
+
+    Output &nbest_;
+};
+
+// Special case for root vertex: everything should come together into the root
+// node.  In theory, this should happen naturally due to state collapsing with
+// <s> and </s>.  If that's the case, VertexGenerator is fine, though it will
+// make one connection.  
+template <class Output> class RootVertexGenerator {
+  public:
+    RootVertexGenerator(Vertex &gen, Output &out) : gen_(gen), out_(out) {}
+
+    void NewHypothesis(PartialEdge partial) {
+      out_.Add(combine_, partial);
+    }
+
+    void FinishedSearch() {
+      gen_.root_.InitRoot();
+      NBestComplete completed(out_.Complete(combine_));
+      gen_.root_.SetEnd(completed.history, completed.score);
+    }
+
+  private:
+    Vertex &gen_;
+    
+    typename Output::Combine combine_;
+    Output &out_;
+};
+
+} // namespace search
+#endif // SEARCH_VERTEX_GENERATOR__