cdec cleanup, remove bayesian stuff, parsing stuff

1 files changed, 0 insertions, 67 deletions

diff --git a/gi/posterior-regularisation/prjava/src/util/InputOutput.java b/gi/posterior-regularisation/prjava/src/util/InputOutput.java
deleted file mode 100644
index da7f71bf..00000000
--- a/gi/posterior-regularisation/prjava/src/util/InputOutput.java
+++ /dev/null
@@ -1,67 +0,0 @@
-package util;
-
-import java.io.BufferedReader;
-import java.io.FileInputStream;
-import java.io.FileNotFoundException;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.InputStreamReader;
-import java.io.OutputStream;
-import java.io.PrintStream;
-import java.io.UnsupportedEncodingException;
-import java.util.Properties;
-import java.util.zip.GZIPInputStream;
-import java.util.zip.GZIPOutputStream;
-
-public class InputOutput {
-
-	/**
-	 * Opens a file either compress with gzip or not compressed.
-	 */
-	public static BufferedReader openReader(String fileName) throws UnsupportedEncodingException, FileNotFoundException, IOException{
-		System.out.println("Reading: " + fileName);
-		BufferedReader reader;
-		fileName = fileName.trim();
-		if(fileName.endsWith("gz")){
-			reader = new BufferedReader(
-			new InputStreamReader(new GZIPInputStream(new FileInputStream(fileName)),"UTF8"));
-		}else{
-			reader = new BufferedReader(new InputStreamReader(
-					new FileInputStream(fileName), "UTF8"));
-		}
-		
-		return reader;
-	}
-	
-	
-	public static PrintStream openWriter(String fileName) 
-	throws UnsupportedEncodingException, FileNotFoundException, IOException{
-		System.out.println("Writting to file: " + fileName);
-		PrintStream writter;
-		fileName = fileName.trim();
-		if(fileName.endsWith("gz")){
-			writter = new PrintStream(new GZIPOutputStream(new FileOutputStream(fileName)),
-					true, "UTF-8");
-
-		}else{
-			writter = new PrintStream(new FileOutputStream(fileName),
-					true, "UTF-8");
-
-		}
-		
-		return writter;
-	}
-	
-	public static Properties readPropertiesFile(String fileName) {
-		Properties properties = new Properties();
-		try {
-			properties.load(new FileInputStream(fileName));
-		} catch (IOException e) {
-			e.printStackTrace();
-			throw new AssertionError("Wrong properties file " + fileName);
-		}
-		System.out.println(properties.toString());
-		
-		return properties;
-	}
-}