cdec cleanup, remove bayesian stuff, parsing stuff

2 files changed, 0 insertions, 156 deletions

diff --git a/gi/posterior-regularisation/prjava/src/optimization/gradientBasedMethods/stats/OptimizerStats.java b/gi/posterior-regularisation/prjava/src/optimization/gradientBasedMethods/stats/OptimizerStats.java
deleted file mode 100644
index 6340ef73..00000000
--- a/gi/posterior-regularisation/prjava/src/optimization/gradientBasedMethods/stats/OptimizerStats.java
+++ /dev/null
@@ -1,86 +0,0 @@
-package optimization.gradientBasedMethods.stats;
-
-import java.util.ArrayList;
-
-import optimization.gradientBasedMethods.Objective;
-import optimization.gradientBasedMethods.Optimizer;
-import optimization.util.MathUtils;
-import optimization.util.StaticTools;
-
-
-public class OptimizerStats {
-	
-	double start = 0;
-	double totalTime = 0;
-	
-	String objectiveFinalStats;
-	
-	ArrayList<Double> gradientNorms = new ArrayList<Double>();
-	ArrayList<Double> steps = new ArrayList<Double>();
-	ArrayList<Double> value = new ArrayList<Double>();
-	ArrayList<Integer> iterations = new ArrayList<Integer>();
-	double prevValue =0;
-	
-	public void reset(){
-		start = 0;
-		totalTime = 0;
-		
-		objectiveFinalStats="";
-		
-		gradientNorms.clear();
-		steps.clear();
-		value.clear();
-		iterations.clear();
-		prevValue =0;
-	}
-	
-	public void startTime() {
-		start = System.currentTimeMillis();
-	}
-	public void stopTime() {
-		totalTime += System.currentTimeMillis() - start;
-	}
-	
-	public String prettyPrint(int level){
-		StringBuffer res = new StringBuffer();
-		res.append("Total time " + totalTime/1000 + " seconds \n" + "Iterations " + iterations.size() + "\n");
-		res.append(objectiveFinalStats+"\n");
-		if(level > 0){
-			if(iterations.size() > 0){
-			res.append("\tIteration"+iterations.get(0)+"\tstep: "+StaticTools.prettyPrint(steps.get(0), "0.00E00", 6)+ "\tgradientNorm "+ 
-					StaticTools.prettyPrint(gradientNorms.get(0), "0.00000E00", 10)+ "\tvalue "+ StaticTools.prettyPrint(value.get(0), "0.000000E00",11)+"\n");
-			}
-			for(int i = 1; i < iterations.size(); i++){
-			res.append("\tIteration:\t"+iterations.get(i)+"\tstep:"+StaticTools.prettyPrint(steps.get(i), "0.00E00", 6)+ "\tgradientNorm "+ 
-					StaticTools.prettyPrint(gradientNorms.get(i), "0.00000E00", 10)+ 
-					"\tvalue:\t"+ StaticTools.prettyPrint(value.get(i), "0.000000E00",11)+
-					"\tvalueDiff:\t"+ StaticTools.prettyPrint((value.get(i-1)-value.get(i)), "0.000000E00",11)+
-					"\n");
-			}
-		}
-		return res.toString();
-	}
-	
-	
-	public void collectInitStats(Optimizer optimizer, Objective objective){
-		startTime();
-		iterations.add(-1);
-		gradientNorms.add(MathUtils.L2Norm(objective.getGradient()));
-		steps.add(0.0);
-		value.add(objective.getValue());
-	}
-	
-	public void collectIterationStats(Optimizer optimizer, Objective objective){
-		iterations.add(optimizer.getCurrentIteration());
-		gradientNorms.add(MathUtils.L2Norm(objective.getGradient()));
-		steps.add(optimizer.getCurrentStep());
-		value.add(optimizer.getCurrentValue());
-	}
-	
-	
-	public void collectFinalStats(Optimizer optimizer, Objective objective){
-		stopTime();
-		objectiveFinalStats = objective.finalInfoString();
-	}
-	
-}
diff --git a/gi/posterior-regularisation/prjava/src/optimization/gradientBasedMethods/stats/ProjectedOptimizerStats.java b/gi/posterior-regularisation/prjava/src/optimization/gradientBasedMethods/stats/ProjectedOptimizerStats.java
deleted file mode 100644
index d65a1267..00000000
--- a/gi/posterior-regularisation/prjava/src/optimization/gradientBasedMethods/stats/ProjectedOptimizerStats.java
+++ /dev/null
@@ -1,70 +0,0 @@
-package optimization.gradientBasedMethods.stats;
-
-import java.util.ArrayList;
-
-import optimization.gradientBasedMethods.Objective;
-import optimization.gradientBasedMethods.Optimizer;
-import optimization.gradientBasedMethods.ProjectedObjective;
-import optimization.gradientBasedMethods.ProjectedOptimizer;
-import optimization.util.MathUtils;
-import optimization.util.StaticTools;
-
-
-public class ProjectedOptimizerStats extends OptimizerStats{
-	
-	
-	
-	public void reset(){
-		super.reset();
-		projectedGradientNorms.clear();
-	}
-	
-	ArrayList<Double> projectedGradientNorms = new ArrayList<Double>();
-
-	public String prettyPrint(int level){
-		StringBuffer res = new StringBuffer();
-		res.append("Total time " + totalTime/1000 + " seconds \n" + "Iterations " + iterations.size() + "\n");
-		res.append(objectiveFinalStats+"\n");
-		if(level > 0){
-			if(iterations.size() > 0){
-			res.append("\tIteration"+iterations.get(0)+"\tstep: "+
-					StaticTools.prettyPrint(steps.get(0), "0.00E00", 6)+ "\tgradientNorm "+ 
-					StaticTools.prettyPrint(gradientNorms.get(0), "0.00000E00", 10)
-					+ "\tdirection"+
-					StaticTools.prettyPrint(projectedGradientNorms.get(0), "0.00000E00", 10)+
-					"\tvalue "+ StaticTools.prettyPrint(value.get(0), "0.000000E00",11)+"\n");
-			}
-			for(int i = 1; i < iterations.size(); i++){
-			res.append("\tIteration"+iterations.get(i)+"\tstep: "+StaticTools.prettyPrint(steps.get(i), "0.00E00", 6)+ "\tgradientNorm "+ 
-					StaticTools.prettyPrint(gradientNorms.get(i), "0.00000E00", 10)+ 
-					"\t direction "+
-					StaticTools.prettyPrint(projectedGradientNorms.get(i), "0.00000E00", 10)+
-					"\tvalue "+ StaticTools.prettyPrint(value.get(i), "0.000000E00",11)+
-					"\tvalueDiff "+ StaticTools.prettyPrint((value.get(i-1)-value.get(i)), "0.000000E00",11)+
-					"\n");
-			}
-		}
-		return res.toString();
-	}
-	
-	
-	public void collectInitStats(Optimizer optimizer, Objective objective){
-		startTime();
-	}
-	
-	public void collectIterationStats(Optimizer optimizer, Objective objective){		
-		iterations.add(optimizer.getCurrentIteration());
-		gradientNorms.add(MathUtils.L2Norm(objective.getGradient()));
-		projectedGradientNorms.add(MathUtils.L2Norm(optimizer.getDirection()));
-		steps.add(optimizer.getCurrentStep());
-		value.add(optimizer.getCurrentValue());
-	}
-	
-	
-	
-	public void collectFinalStats(Optimizer optimizer, Objective objective){
-		stopTime();
-		objectiveFinalStats = objective.finalInfoString();
-	}
-	
-}