Merge remote branch 'upstream/master'

Conflicts:
	Jamroot
	bjam
	decoder/Jamfile
	decoder/cdec.cc
	dpmert/Jamfile
	jam-files/sanity.jam
	klm/lm/Jamfile
	klm/util/Jamfile
	mira/Jamfile

1 files changed, 0 insertions, 277 deletions

diff --git a/gi/pipeline/OLD.evaluation-pipeline.pl b/gi/pipeline/OLD.evaluation-pipeline.pl
deleted file mode 100755
index 49c303eb..00000000
--- a/gi/pipeline/OLD.evaluation-pipeline.pl
+++ /dev/null
@@ -1,277 +0,0 @@
-#!/usr/bin/perl -w
-use strict;
-use Getopt::Long;
-use Cwd;
-my $CWD = getcwd;
-
-my $SCRIPT_DIR; BEGIN { use Cwd qw/ abs_path /; use File::Basename; $SCRIPT_DIR = dirname(abs_path($0)); push @INC, $SCRIPT_DIR; }
-
-my @DEFAULT_FEATS = qw(
-  LogRuleCount SingletonRule LexE2F LexF2E WordPenalty
-  LogFCount LanguageModel Glue GlueTop PassThrough SingletonF
-);
-
-my %init_weights = qw(
-  LogRuleCount 0.2
-  LexE2F -0.3
-  LexF2E -0.3
-  LogFCount 0.1
-  WordPenalty -1.5
-  LanguageModel 1.2
-  Glue -1.0
-  GlueTop 0.00001
-  PassThrough -10.0
-  SingletonRule -0.1
-  X_EGivenF -0.3
-  X_FGivenE -0.3
-  X_LogECount -1
-  X_LogFCount -0.1
-  X_LogRuleCount 0.3
-  X_SingletonE -0.1
-  X_SingletonF -0.1
-  X_SingletonRule -0.5
-);
-
-my $CDEC = "$SCRIPT_DIR/../../decoder/cdec";
-my $PARALLELIZE = "$SCRIPT_DIR/../../vest/parallelize.pl";
-my $EXTOOLS = "$SCRIPT_DIR/../../extools";
-die "Can't find extools: $EXTOOLS" unless -e $EXTOOLS && -d $EXTOOLS;
-my $VEST = "$SCRIPT_DIR/../../vest";
-die "Can't find vest: $VEST" unless -e $VEST && -d $VEST;
-my $DISTVEST = "$VEST/dist-vest.pl";
-my $FILTSCORE = "$EXTOOLS/filter_score_grammar";
-my $ADDXFEATS = "$SCRIPT_DIR/scripts/xfeats.pl";
-assert_exec($CDEC, $PARALLELIZE, $FILTSCORE, $DISTVEST, $ADDXFEATS);
-
-my $config = "$SCRIPT_DIR/OLD.clsp.config";
-print STDERR "CORPORA CONFIGURATION: $config\n";
-open CONF, "<$config" or die "Can't read $config: $!";
-my %paths;
-my %corpora;
-my %lms;
-my %devs;
-my %devrefs;
-my %tests;
-my %testevals;
-my %xgrammars;
-print STDERR "       LANGUAGE PAIRS:";
-while(<CONF>) {
-  chomp;
-  next if /^#/;
-  next if /^\s*$/;
-  s/^\s+//;
-  s/\s+$//;
-  my ($name, $path, $corpus, $lm, $xgrammar, $dev, $devref, @xtests) = split /\s+/;
-  $paths{$name} = $path;
-  $corpora{$name} = $corpus;
-  $lms{$name} = $lm;
-  $xgrammars{$name} = $xgrammar;
-  $devs{$name} = $dev;
-  $devrefs{$name} = $devref;
-  $tests{$name} = $xtests[0];
-  $testevals{$name} = $xtests[1];
-  print STDERR " $name";
-}
-print STDERR "\n";
-
-my %langpairs = map { $_ => 1 } qw( btec zhen fbis aren uren nlfr );
-
-my $outdir = "$CWD/exp";
-my $help;
-my $XFEATS;
-my $EXTRA_FILTER = '';
-my $dataDir = '/export/ws10smt/data';
-if (GetOptions(
-        "data=s" => \$dataDir,
-        "xfeats" => \$XFEATS,
-) == 0 || @ARGV!=2 || $help) {
-        print_help();
-        exit;
-}
-my $lp = $ARGV[0];
-my $grammar = $ARGV[1];
-print STDERR "   CORPUS REPO: $dataDir\n";
-print STDERR " LANGUAGE PAIR: $lp\n";
-die "I don't know about that language pair\n" unless $paths{$lp};
-my $corpdir = "$dataDir";
-if ($paths{$lp} =~ /^\//) { $corpdir = $paths{$lp}; } else { $corpdir .= '/' . $paths{$lp}; }
-die "I can't find the corpora directory: $corpdir" unless -d $corpdir;
-print STDERR "       GRAMMAR: $grammar\n";
-my $LANG_MODEL = mydircat($corpdir, $lms{$lp});
-print STDERR "            LM: $LANG_MODEL\n";
-my $CORPUS = mydircat($corpdir, $corpora{$lp});
-die "Can't find corpus: $CORPUS" unless -f $CORPUS;
-
-my $dev = mydircat($corpdir, $devs{$lp});
-my $drefs = $devrefs{$lp};
-die "Can't find dev: $dev\n" unless -f $dev;
-die "Dev refs not set" unless $drefs;
-$drefs = mydircat($corpdir, $drefs);
-
-my $test = mydircat($corpdir, $tests{$lp});
-my $teval = mydircat($corpdir, $testevals{$lp});
-die "Can't find test: $test\n" unless -f $test;
-assert_exec($teval);
-
-if ($XFEATS) {
-  my $xgram = mydircat($corpdir, $xgrammars{$lp});
-  die "Can't find x-grammar: $xgram" unless -f $xgram;
-  $EXTRA_FILTER = "$ADDXFEATS $xgram |";
-  print STDERR "ADDING X-FEATS FROM $xgram\n";
-}
-
-# MAKE DEV
-print STDERR "\nFILTERING FOR dev...\n";
-print STDERR "DEV: $dev (REFS=$drefs)\n";
-`mkdir -p $outdir`;
-my $devgrammar = filter($grammar, $dev, 'dev', $outdir);
-my $devini = mydircat($outdir, "cdec-dev.ini");
-write_cdec_ini($devini, $devgrammar);
-
-
-# MAKE TEST
-print STDERR "\nFILTERING FOR test...\n";
-print STDERR "TEST: $test (EVAL=$teval)\n";
-`mkdir -p $outdir`;
-my $testgrammar = filter($grammar, $test, 'test', $outdir);
-my $testini = mydircat($outdir, "cdec-test.ini");
-write_cdec_ini($testini, $testgrammar);
-
-
-# CREATE INIT WEIGHTS
-print STDERR "\nCREATING INITIAL WEIGHTS FILE: weights.init\n";
-my $weights = mydircat($outdir, "weights.init");
-write_random_weights_file($weights);
-
-
-# VEST
-print STDERR "\nMINIMUM ERROR TRAINING\n";
-my $tuned_weights = mydircat($outdir, 'weights.tuned');
-if (-f $tuned_weights) {
-  print STDERR "TUNED WEIGHTS $tuned_weights EXISTS: REUSING\n";
-} else {
-  my $cmd = "$DISTVEST --ref-files=$drefs --source-file=$dev --weights $weights $devini";
-  print STDERR "MERT COMMAND: $cmd\n";
-  `rm -rf $outdir/vest 2> /dev/null`;
-  chdir $outdir or die "Can't chdir to $outdir: $!";
-  $weights = `$cmd`;
-  die "MERT reported non-zero exit code" unless $? == 0;
-  chomp $weights;
-  safesystem($tuned_weights, "cp $weights $tuned_weights");
-  print STDERR "TUNED WEIGHTS: $tuned_weights\n";
-  die "$tuned_weights is missing!" unless -f $tuned_weights;
-}
-
-# DECODE
-print STDERR "\nDECODE TEST SET\n";
-my $decolog = mydircat($outdir, "test-decode.log");
-my $testtrans = mydircat($outdir, "test.trans");
-my $cmd = "cat $test | $PARALLELIZE -j 20 -e $decolog -- $CDEC -c $testini -w $tuned_weights > $testtrans";
-safesystem($testtrans, $cmd) or die "Failed to decode test set!";
-
-
-# EVALUATE
-print STDERR "\nEVALUATE TEST SET\n";
-print STDERR "TEST: $testtrans\n";
-$cmd = "$teval $testtrans";
-safesystem(undef, $cmd) or die "Failed to evaluate!";
-exit 0;
-
-
-sub write_random_weights_file {
-  my ($file, @extras) = @_;
-  open F, ">$file" or die "Can't write $file: $!";
-  my @feats = (@DEFAULT_FEATS, @extras);
-  if ($XFEATS) {
-    my @xfeats = qw(
-      X_LogRuleCount X_LogECount X_LogFCount X_EGivenF X_FGivenE X_SingletonRule X_SingletonE X_SingletonF
-    );
-    @feats = (@feats, @xfeats);
-  }
-  for my $feat (@feats) {
-    my $r = rand(1.6);
-    my $w = $init_weights{$feat} * $r;
-    if ($w == 0) { $w = 0.0001; print STDERR "WARNING: $feat had no initial weight!\n"; }
-    print F "$feat $w\n";
-  }
-  close F;
-}
-
-sub filter {
-  my ($grammar, $set, $name, $outdir) = @_;
-  my $outgrammar = mydircat($outdir, "$name.scfg.gz");
-  if (-f $outgrammar) { print STDERR "$outgrammar exists - REUSING!\n"; } else {
-    my $cmd = "gunzip -c $grammar | $FILTSCORE -c $CORPUS -t $set | $EXTRA_FILTER gzip > $outgrammar";
-    safesystem($outgrammar, $cmd) or die "Can't filter and score grammar!";
-  }
-  return $outgrammar;
-}
-
-sub mydircat {
- my ($base, $suffix) = @_;
- if ($suffix =~ /^\//) { return $suffix; }
- my $res = $base . '/' . $suffix;
- $res =~ s/\/\//\//g;
- return $res;
-}
-
-sub write_cdec_ini {
-  my ($filename, $grammar_path) = (@_);
-  open CDECINI, ">$filename" or die "Can't write $filename: $!";
-  print CDECINI <<EOT;
-formalism=scfg
-cubepruning_pop_limit=100
-add_pass_through_rules=true
-scfg_extra_glue_grammar=/export/ws10smt/data/glue/glue.scfg.gz
-grammar=$grammar_path
-feature_function=WordPenalty
-feature_function=LanguageModel -o 3 $LANG_MODEL
-EOT
-  close CDECINI;
-};
-
-sub print_help {
-  print STDERR<<EOT;
-
-Usage: $0 [OPTIONS] language-pair unfiltered-grammar.gz
-
-Given an induced grammar for an entire corpus (i.e., generated by
-local-gi-pipeline.pl), filter and featurize it for a dev and test set,
-run MERT, report scores.
-
-EOT
-}
-
-sub safesystem {
-  my $output = shift @_;
-  print STDERR "Executing: @_\n";
-  system(@_);
-  if ($? == -1) {
-      print STDERR "ERROR: Failed to execute: @_\n  $!\n";
-      if (defined $output && -e $output) { printf STDERR "Removing $output\n"; `rm -rf $output`; }
-      exit(1);
-  }
-  elsif ($? & 127) {
-      printf STDERR "ERROR: Execution of: @_\n  died with signal %d, %s coredump\n",
-          ($? & 127),  ($? & 128) ? 'with' : 'without';
-      if (defined $output && -e $output) { printf STDERR "Removing $output\n"; `rm -rf $output`; }
-      exit(1);
-  }
-  else {
-    my $exitcode = $? >> 8;
-    if ($exitcode) {
-      print STDERR "Exit code: $exitcode\n";
-      if (defined $output && -e $output) { printf STDERR "Removing $output\n"; `rm -rf $output`; }
-    }
-    return ! $exitcode;
-  }
-}
-
-sub assert_exec {
-  my @files = @_;
-  for my $file (@files) {
-    die "Can't find $file - did you run make?\n" unless -e $file;
-    die "Can't execute $file" unless -e $file;
-  }
-};
-