merge upstream/master

1 files changed, 0 insertions, 439 deletions

diff --git a/extools/extractor.cc b/extools/extractor.cc
deleted file mode 100644
index 1e4154ef..00000000
--- a/extools/extractor.cc
+++ /dev/null
@@ -1,439 +0,0 @@
-#include <iostream>
-#include <vector>
-#include <utility>
-#include <tr1/unordered_map>
-
-#include <boost/functional/hash.hpp>
-#include <boost/program_options.hpp>
-#include <boost/program_options/variables_map.hpp>
-#include <boost/lexical_cast.hpp>
-
-#include "sparse_vector.h"
-#include "sentence_pair.h"
-#include "extract.h"
-#include "tdict.h"
-#include "fdict.h"
-#include "wordid.h"
-#include "array2d.h"
-#include "filelib.h"
-#include "striped_grammar.h"
-
-using namespace std;
-using namespace std::tr1;
-namespace po = boost::program_options;
-
-static const size_t MAX_LINE_LENGTH = 100000;
-WordID kBOS, kEOS, kDIVIDER, kGAP, kSPLIT;
-int kCOUNT;
-
-void InitCommandLine(int argc, char** argv, po::variables_map* conf) {
-  po::options_description opts("Configuration options");
-  opts.add_options()
-        ("input,i", po::value<string>()->default_value("-"), "Input file")
-        ("default_category,d", po::value<string>(), "Default span type (use X for 'Hiero')")
-        ("x_cdyer_pos,x", "Extract monolingual POS contexts (cdyer experimental)")
-        ("loose", "Use loose phrase extraction heuristic for base phrases")
-        ("base_phrase,B", "Write base phrases")
-        ("base_phrase_spans", "Write base sentences and phrase spans")
-        ("phrase_language", po::value<string>()->default_value("target"), "Extract phrase strings in source, target or both languages")
-        ("context_language", po::value<string>()->default_value("target"), "Extract context strings in source, target or both languages")
-        ("bidir,b", "Extract bidirectional rules (for computing p(f|e) in addition to p(e|f))")
-        ("combiner_size,c", po::value<size_t>()->default_value(800000), "Number of unique items to store in cache before writing rule counts. Set to 1 to disable cache. Set to 0 for no limit.")
-        ("silent", "Write nothing to stderr except errors")
-        ("phrase_context,C", "Write base phrase contexts")
-        ("phrase_context_size,S", po::value<int>()->default_value(2), "Use this many words of context on left and write when writing base phrase contexts")
-        ("max_base_phrase_size,L", po::value<int>()->default_value(10), "Maximum starting phrase size")
-        ("max_syms,l", po::value<int>()->default_value(5), "Maximum number of symbols in final phrase size")
-        ("max_vars,v", po::value<int>()->default_value(2), "Maximum number of nonterminal variables in final phrase size")
-        ("permit_adjacent_nonterminals,A", "Permit adjacent nonterminals in source side of rules")
-        ("no_required_aligned_terminal,n", "Do not require an aligned terminal")
-        ("topics,t", po::value<int>()->default_value(50), "Number of categories assigned during clustering")
-        ("backoff,g","Produce a backoff grammar")
-        ("help,h", "Print this help message and exit");
-  po::options_description clo("Command line options");
-  po::options_description dcmdline_options;
-  dcmdline_options.add(opts);
-
-  po::store(parse_command_line(argc, argv, dcmdline_options), *conf);
-  po::notify(*conf);
-
-  if (conf->count("help") || conf->count("input") == 0) {
-    cerr << "\nUsage: extractor [-options]\n";
-    cerr << dcmdline_options << endl;
-    exit(1);
-  }
-}
-
-// TODO how to handle alignment information?
-void WriteBasePhrases(const AnnotatedParallelSentence& sentence,
-                      const vector<ParallelSpan>& phrases) {
-  vector<WordID> e,f;
-  for (int it = 0; it < phrases.size(); ++it) {
-    const ParallelSpan& phrase = phrases[it];
-    e.clear();
-    f.clear();
-    for (int i = phrase.i1; i < phrase.i2; ++i)
-      f.push_back(sentence.f[i]);
-    for (int j = phrase.j1; j < phrase.j2; ++j)
-      e.push_back(sentence.e[j]);
-    cout << TD::GetString(f) << " ||| " << TD::GetString(e) << endl;
-  }
-}
-
-void WriteBasePhraseSpans(const AnnotatedParallelSentence& sentence,
-                          const vector<ParallelSpan>& phrases) {
-  cout << TD::GetString(sentence.f) << " ||| " << TD::GetString(sentence.e) << " |||";
-  for (int it = 0; it < phrases.size(); ++it) {
-    const ParallelSpan& phrase = phrases[it];
-    cout << " " << phrase.i1 << "-" << phrase.i2
-      << "-" << phrase.j1 << "-" << phrase.j2;
-  }
-  cout << endl;
-}
-
-struct CountCombiner {
-  CountCombiner(const size_t& csize) : combiner_size(csize) {
-    if (csize == 0) { cerr << "Using unlimited combiner cache.\n"; }
-  }
-  ~CountCombiner() {
-    if (!cache.empty()) WriteAndClearCache();
-  }
-
-  void Count(const vector<WordID>& key,
-             const vector<WordID>& val,
-             const int count_type,
-             const vector<pair<short,short> >& aligns) {
-    if (combiner_size != 1) {
-      RuleStatistics& v = cache[key][val];
-      float newcount = v.counts.add_value(count_type, 1.0f);
-      // hack for adding alignments
-      if (newcount < 7.0f && aligns.size() > v.aligns.size())
-        v.aligns = aligns;
-      if (combiner_size > 1 && cache.size() > combiner_size)
-        WriteAndClearCache();
-    } else {
-      cout << TD::GetString(key) << '\t' << TD::GetString(val) << " ||| ";
-      cout << RuleStatistics(count_type, 1.0f, aligns) << endl;
-    }
-  }
-
- private:
-  void WriteAndClearCache() {
-    for (unordered_map<vector<WordID>, Vec2PhraseCount, boost::hash<vector<WordID> > >::iterator it = cache.begin();
-         it != cache.end(); ++it) {
-      cout << TD::GetString(it->first) << '\t';
-      const Vec2PhraseCount& vals = it->second;
-      bool needdiv = false;
-      for (Vec2PhraseCount::const_iterator vi = vals.begin(); vi != vals.end(); ++vi) {
-        if (needdiv) cout << " ||| "; else needdiv = true;
-        cout << TD::GetString(vi->first) << " ||| " << vi->second;
-      }
-      cout << endl;
-    }
-    cache.clear();
-  }
-
-  const size_t combiner_size;
-  typedef unordered_map<vector<WordID>, RuleStatistics, boost::hash<vector<WordID> > > Vec2PhraseCount;
-  unordered_map<vector<WordID>, Vec2PhraseCount, boost::hash<vector<WordID> > > cache;
-};
-
-// TODO optional source context
-// output <k, v> : k = phrase "document" v = context "term"
-void WritePhraseContexts(const AnnotatedParallelSentence& sentence,
-                         const vector<ParallelSpan>& phrases,
-                         const int ctx_size,
-                         bool phrase_s, bool phrase_t,
-                         bool context_s, bool context_t,
-                         CountCombiner* o) {
-  vector<WordID> context, context_f;
-  if (context_t)
-  {
-      context.resize(ctx_size * 2 + 1);
-      context[ctx_size] = kGAP;
-  }
-  if (context_s)
-  {
-      context_f.resize(ctx_size * 2 + 1);
-      context_f[ctx_size] = kGAP;
-  }
-  vector<WordID> key, key_f;
-  if (phrase_t) key.reserve(100);
-  if (phrase_s) key_f.reserve(100);
-
-  for (int it = 0; it < phrases.size(); ++it) {
-    const ParallelSpan& phrase = phrases[it];
-
-    key.clear();
-    for (int j = phrase.j1; j < phrase.j2 && phrase_t; ++j)
-      key.push_back(sentence.e[j]);
-
-    if (context_t)
-    {
-        context.resize(ctx_size * 2 + 1);
-        for (int i = 0; i < ctx_size && context_t; ++i) {
-          int epos = phrase.j1 - 1 - i;
-          const WordID left_ctx = (epos < 0) ? kBOS : sentence.e[epos];
-          context[ctx_size - i - 1] = left_ctx;
-          epos = phrase.j2 + i;
-          const WordID right_ctx = (epos >= sentence.e_len) ? kEOS : sentence.e[epos];
-          context[ctx_size + i + 1] = right_ctx;
-        }
-    }
-    else
-        context.clear();
-
-    if (phrase_s)
-    {
-        key_f.clear();
-        for (int i = phrase.i1; i < phrase.i2; ++i)
-          key_f.push_back(sentence.f[i]);
-        if (phrase_t) key.push_back(kSPLIT);
-        copy(key_f.begin(), key_f.end(), back_inserter(key));
-    }
-
-    if (context_s)
-    {
-        for (int i = 0; i < ctx_size; ++i) {
-          int fpos = phrase.i1 - 1 - i;
-          const WordID left_ctx = (fpos < 0) ? kBOS : sentence.f[fpos];
-          context_f[ctx_size - i - 1] = left_ctx;
-          fpos = phrase.i2 + i;
-          const WordID right_ctx = (fpos >= sentence.f_len) ? kEOS : sentence.f[fpos];
-          context_f[ctx_size + i + 1] = right_ctx;
-        }
-        if (context_t) context.push_back(kSPLIT);
-        copy(context_f.begin(), context_f.end(), back_inserter(context));
-    }
-
-    o->Count(key, context, kCOUNT, vector<pair<short,short> >());
-  }
-}
-
-struct SimpleRuleWriter : public Extract::RuleObserver {
- protected:
-  virtual void CountRuleImpl(WordID lhs,
-                             const vector<WordID>& rhs_f,
-                             const vector<WordID>& rhs_e,
-                             const vector<pair<short,short> >& fe_terminal_alignments) {
-    cout << "[" << TD::Convert(-lhs) << "] |||";
-    for (int i = 0; i < rhs_f.size(); ++i) {
-      if (rhs_f[i] < 0) cout << " [" << TD::Convert(-rhs_f[i]) << ']';
-      else cout << ' ' << TD::Convert(rhs_f[i]);
-    }
-    cout << " |||";
-    for (int i = 0; i < rhs_e.size(); ++i) {
-      if (rhs_e[i] <= 0) cout << " [" << (1-rhs_e[i]) << ']';
-      else cout << ' ' << TD::Convert(rhs_e[i]);
-    }
-    cout << " |||";
-    for (int i = 0; i < fe_terminal_alignments.size(); ++i) {
-      cout << ' ' << fe_terminal_alignments[i].first << '-' << fe_terminal_alignments[i].second;
-    }
-    cout << endl;
-  }
-};
-
-struct HadoopStreamingRuleObserver : public Extract::RuleObserver {
-  HadoopStreamingRuleObserver(CountCombiner* cc, bool bidir_flag) :
-     bidir(bidir_flag),
-     kF(TD::Convert("F")),
-     kE(TD::Convert("E")),
-     kDIVIDER(TD::Convert("|||")),
-     kLB("["), kRB("]"),
-     combiner(*cc),
-     kEMPTY(),
-     kCFE(FD::Convert("CFE")) {
-   for (int i=1; i < 50; ++i)
-     index2sym[1-i] = TD::Convert(kLB + boost::lexical_cast<string>(i) + kRB);
-   fmajor_key.resize(10, kF);
-   emajor_key.resize(10, kE);
-   if (bidir)
-     fmajor_key[2] = emajor_key[2] = kDIVIDER;
-   else
-     fmajor_key[1] = kDIVIDER;
- }
-
- protected:
-  virtual void CountRuleImpl(WordID lhs,
-                             const vector<WordID>& rhs_f,
-                             const vector<WordID>& rhs_e,
-                             const vector<pair<short,short> >& fe_terminal_alignments) {
-    if (bidir) { // extract rules in "both directions" E->F and F->E
-      fmajor_key.resize(3 + rhs_f.size());
-      emajor_key.resize(3 + rhs_e.size());
-      fmajor_val.resize(rhs_e.size());
-      emajor_val.resize(rhs_f.size());
-      emajor_key[1] = fmajor_key[1] = MapSym(lhs);
-      int nt = 1;
-      for (int i = 0; i < rhs_f.size(); ++i) {
-        const WordID id = rhs_f[i];
-        if (id < 0) {
-          fmajor_key[3 + i] = MapSym(id, nt);
-          emajor_val[i] = MapSym(id, nt);
-          ++nt;
-        } else {
-          fmajor_key[3 + i] = id;
-          emajor_val[i] = id;
-        }
-      }
-      for (int i = 0; i < rhs_e.size(); ++i) {
-        WordID id = rhs_e[i];
-        if (id <= 0) {
-          fmajor_val[i] = index2sym[id];
-          emajor_key[3 + i] = index2sym[id];
-        } else {
-          fmajor_val[i] = id;
-          emajor_key[3 + i] = id;
-        }
-      }
-      combiner.Count(fmajor_key, fmajor_val, kCFE, fe_terminal_alignments);
-      combiner.Count(emajor_key, emajor_val, kCFE, kEMPTY);
-    } else { // extract rules only in F->E
-      fmajor_key.resize(2 + rhs_f.size());
-      fmajor_val.resize(rhs_e.size());
-      fmajor_key[0] = MapSym(lhs);
-      int nt = 1;
-      for (int i = 0; i < rhs_f.size(); ++i) {
-        const WordID id = rhs_f[i];
-        if (id < 0)
-          fmajor_key[2 + i] = MapSym(id, nt++);
-        else
-          fmajor_key[2 + i] = id;
-      }
-      for (int i = 0; i < rhs_e.size(); ++i) {
-        const WordID id = rhs_e[i];
-        if (id <= 0)
-          fmajor_val[i] = index2sym[id];
-        else
-          fmajor_val[i] = id;
-      }
-      combiner.Count(fmajor_key, fmajor_val, kCFE, fe_terminal_alignments);
-    }
-  }
-
- private:
-  WordID MapSym(WordID sym, int ind = 0) {
-    WordID& r = cat2ind2sym[sym][ind];
-    if (!r) {
-      if (ind == 0)
-        r = TD::Convert(kLB + TD::Convert(-sym) + kRB);
-      else
-        r = TD::Convert(kLB + TD::Convert(-sym) + "," + boost::lexical_cast<string>(ind) + kRB);
-    }
-    return r;
-  }
-
-  const bool bidir;
-  const WordID kF, kE, kDIVIDER;
-  const string kLB, kRB;
-  CountCombiner& combiner;
-  const vector<pair<short,short> > kEMPTY;
-  const int kCFE;
-  map<WordID, map<int, WordID> > cat2ind2sym;
-  map<int, WordID> index2sym;
-  vector<WordID> emajor_key, emajor_val, fmajor_key, fmajor_val;
-};
-
-int main(int argc, char** argv) {
-  po::variables_map conf;
-  InitCommandLine(argc, argv, &conf);
-  kBOS = TD::Convert("<s>");
-  kEOS = TD::Convert("</s>");
-  kDIVIDER = TD::Convert("|||");
-  kGAP = TD::Convert("<PHRASE>");
-  kCOUNT = FD::Convert("C");
-  kSPLIT = TD::Convert("<SPLIT>");
-
-  WordID default_cat = 0;  // 0 means no default- extraction will
-                           // fail if a phrase is extracted without a
-                           // category
-  const bool backoff = (conf.count("backoff") ? true : false);
-  if (conf.count("default_category")) {
-    string sdefault_cat = conf["default_category"].as<string>();
-    default_cat = -TD::Convert(sdefault_cat);
-    cerr << "Default category: " << sdefault_cat << endl;
-  }
-  ReadFile rf(conf["input"].as<string>());
-  istream& in = *rf.stream();
-
-  char buf[MAX_LINE_LENGTH];
-  AnnotatedParallelSentence sentence;
-  vector<ParallelSpan> phrases;
-  vector<WordID> all_cats;
-  int max_base_phrase_size = conf["max_base_phrase_size"].as<int>();
-  bool write_phrase_contexts = conf.count("phrase_context") > 0;
-  const bool write_base_phrases = conf.count("base_phrase") > 0;
-  const bool write_base_phrase_spans = conf.count("base_phrase_spans") > 0;
-  const bool loose_phrases = conf.count("loose") > 0;
-  const bool silent = conf.count("silent") > 0;
-  const int max_syms = conf["max_syms"].as<int>();
-  const int max_vars = conf["max_vars"].as<int>();
-  const int ctx_size = conf["phrase_context_size"].as<int>();
-  const int num_categories = conf["topics"].as<int>();
-  const bool permit_adjacent_nonterminals = conf.count("permit_adjacent_nonterminals") > 0;
-  const bool require_aligned_terminal = conf.count("no_required_aligned_terminal") == 0;
-  const string ps = conf["phrase_language"].as<string>();
-  const bool phrase_s = ps == "source" || ps == "both";
-  const bool phrase_t = ps == "target" || ps == "both";
-  const string cs = conf["context_language"].as<string>();
-  const bool context_s = cs == "source" || cs == "both";
-  const bool context_t = cs == "target" || cs == "both";
-  const bool x_cdyer_pos = conf.count("x_cdyer_pos");
-  int line = 0;
-  CountCombiner cc(conf["combiner_size"].as<size_t>());
-  HadoopStreamingRuleObserver o(&cc,
-                                conf.count("bidir") > 0);
-
-  assert(phrase_s || phrase_t);
-  assert(context_s || context_t);
-
-  if(backoff) {
-    for (int i=0;i < num_categories;++i)
-        all_cats.push_back(TD::Convert("X"+boost::lexical_cast<string>(i)));
-  }
-
-  //SimpleRuleWriter o;
-  while(in) {
-    ++line;
-    in.getline(buf, MAX_LINE_LENGTH);
-    if (buf[0] == 0) continue;
-    //cerr << "line #" << line << " = " << buf << endl;
-    if (!silent) {
-      if (line % 200 == 0) cerr << '.';
-      if (line % 8000 == 0) cerr << " [" << line << "]\n" << flush;
-    }
-    sentence.ParseInputLine(buf);
-    if (x_cdyer_pos) {
-      sentence.e = sentence.f;
-      sentence.AllocateForAlignment();
-      for (int i = 0; i < sentence.e.size(); ++i) sentence.Align(i,i);
-      max_base_phrase_size = 1;
-      write_phrase_contexts = true;
-    }
-    phrases.clear();
-    Extract::ExtractBasePhrases(max_base_phrase_size, sentence, &phrases);
-    if (loose_phrases)
-      Extract::LoosenPhraseBounds(sentence, max_base_phrase_size, &phrases);
-    if (phrases.empty()) {
-      cerr << "WARNING no phrases extracted line: " << line << endl;
-      continue;
-    }
-    if (write_phrase_contexts) {
-      WritePhraseContexts(sentence, phrases, ctx_size, phrase_s, phrase_t, context_s, context_t, &cc);
-      continue;
-    }
-    if (write_base_phrases) {
-      WriteBasePhrases(sentence, phrases);
-      continue;
-    }
-    if (write_base_phrase_spans) {
-      WriteBasePhraseSpans(sentence, phrases);
-      continue;
-    }
-    Extract::AnnotatePhrasesWithCategoryTypes(default_cat, sentence.span_types, &phrases);
-    Extract::ExtractConsistentRules(sentence, phrases, max_vars, max_syms, permit_adjacent_nonterminals, require_aligned_terminal, &o, &all_cats);
-  }
-  if (!silent) cerr << endl;
-  return 0;
-}