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authorAvneesh Saluja <asaluja@gmail.com>2013-03-28 18:28:16 -0700
committerAvneesh Saluja <asaluja@gmail.com>2013-03-28 18:28:16 -0700
commit3d8d656fa7911524e0e6885647173474524e0784 (patch)
tree81b1ee2fcb67980376d03f0aa48e42e53abff222 /training/dpmert/dpmert.pl
parentbe7f57fdd484e063775d7abf083b9fa4c403b610 (diff)
parent96fedabebafe7a38a6d5928be8fff767e411d705 (diff)
fixed conflicts
Diffstat (limited to 'training/dpmert/dpmert.pl')
-rwxr-xr-xtraining/dpmert/dpmert.pl618
1 files changed, 618 insertions, 0 deletions
diff --git a/training/dpmert/dpmert.pl b/training/dpmert/dpmert.pl
new file mode 100755
index 00000000..559420f5
--- /dev/null
+++ b/training/dpmert/dpmert.pl
@@ -0,0 +1,618 @@
+#!/usr/bin/env perl
+use strict;
+my @ORIG_ARGV=@ARGV;
+use Cwd qw(getcwd);
+my $SCRIPT_DIR; BEGIN { use Cwd qw/ abs_path /; use File::Basename; $SCRIPT_DIR = dirname(abs_path($0)); push @INC, $SCRIPT_DIR, "$SCRIPT_DIR/../../environment", "$SCRIPT_DIR/../utils"; }
+
+# Skip local config (used for distributing jobs) if we're running in local-only mode
+use LocalConfig;
+use Getopt::Long;
+use File::Basename qw(basename);
+require "libcall.pl";
+
+my $QSUB_CMD = qsub_args(mert_memory());
+
+# Default settings
+my $srcFile; # deprecated
+my $refFiles; # deprecated
+my $default_jobs = env_default_jobs();
+my $bin_dir = $SCRIPT_DIR;
+my $util_dir = "$SCRIPT_DIR/../utils";
+die "Bin directory $bin_dir missing/inaccessible" unless -d $bin_dir;
+my $FAST_SCORE="$bin_dir/../../mteval/fast_score";
+die "Can't execute $FAST_SCORE" unless -x $FAST_SCORE;
+my $MAPINPUT = "$bin_dir/mr_dpmert_generate_mapper_input";
+my $MAPPER = "$bin_dir/mr_dpmert_map";
+my $REDUCER = "$bin_dir/mr_dpmert_reduce";
+my $parallelize = "$util_dir/parallelize.pl";
+my $libcall = "$util_dir/libcall.pl";
+my $sentserver = "$util_dir/sentserver";
+my $sentclient = "$util_dir/sentclient";
+my $LocalConfig = "$SCRIPT_DIR/../../environment/LocalConfig.pm";
+
+my $SCORER = $FAST_SCORE;
+die "Can't find $MAPPER" unless -x $MAPPER;
+my $cdec = "$bin_dir/../../decoder/cdec";
+die "Can't find decoder in $cdec" unless -x $cdec;
+die "Can't find $parallelize" unless -x $parallelize;
+die "Can't find $libcall" unless -e $libcall;
+my $decoder = $cdec;
+my $lines_per_mapper = 200;
+my $rand_directions = 15;
+my $iteration = 1;
+my $best_weights;
+my $max_iterations = 15;
+my $optimization_iters = 6;
+my $jobs = $default_jobs; # number of decode nodes
+my $pmem = "9g";
+my $disable_clean = 0;
+my %seen_weights;
+my $help = 0;
+my $epsilon = 0.0001;
+my $last_score = -10000000;
+my $metric = "ibm_bleu";
+my $dir;
+my $iniFile;
+my $weights;
+my $initialWeights;
+my $bleu_weight=1;
+my $use_make = 1; # use make to parallelize line search
+my $useqsub;
+my $pass_suffix = '';
+my $devset;
+# Process command-line options
+if (GetOptions(
+ "config=s" => \$iniFile,
+ "weights=s" => \$initialWeights,
+ "devset=s" => \$devset,
+ "jobs=i" => \$jobs,
+ "pass-suffix=s" => \$pass_suffix,
+ "help" => \$help,
+ "qsub" => \$useqsub,
+ "iterations=i" => \$max_iterations,
+ "pmem=s" => \$pmem,
+ "random-directions=i" => \$rand_directions,
+ "metric=s" => \$metric,
+ "source-file=s" => \$srcFile,
+ "output-dir=s" => \$dir,
+) == 0 || @ARGV!=0 || $help) {
+ print_help();
+ exit;
+}
+
+if ($useqsub) {
+ $use_make = 0;
+ die "LocalEnvironment.pm does not have qsub configuration for this host. Cannot run with --qsub!\n" unless has_qsub();
+}
+
+my @missing_args = ();
+if (defined $srcFile || defined $refFiles) {
+ die <<EOT;
+
+ The options --ref-files and --source-file are no longer supported.
+ Please specify the input file and its reference translations with
+ --devset FILE
+
+EOT
+}
+
+if (!defined $iniFile) { push @missing_args, "--config"; }
+if (!defined $devset) { push @missing_args, "--devset"; }
+if (!defined $initialWeights) { push @missing_args, "--weights"; }
+die "Please specify missing arguments: " . join (', ', @missing_args) . "\nUse --help for more information.\n" if (@missing_args);
+
+if ($metric =~ /^(combi|ter)$/i) {
+ $lines_per_mapper = 40;
+} elsif ($metric =~ /^meteor$/i) {
+ $lines_per_mapper = 2000; # start up time is really high for METEOR
+}
+
+
+my $nodelist;
+my $host =check_output("hostname"); chomp $host;
+my $bleu;
+my $interval_count = 0;
+my $logfile;
+my $projected_score;
+
+# used in sorting scores
+my $DIR_FLAG = '-r';
+if ($metric =~ /^ter$|^aer$/i) {
+ $DIR_FLAG = '';
+}
+
+unless ($dir){
+ $dir = "dpmert";
+}
+unless ($dir =~ /^\//){ # convert relative path to absolute path
+ my $basedir = check_output("pwd");
+ chomp $basedir;
+ $dir = "$basedir/$dir";
+}
+
+
+# Initializations and helper functions
+srand;
+
+my @childpids = ();
+my @cleanupcmds = ();
+
+sub cleanup {
+ print STDERR "Cleanup...\n";
+ for my $pid (@childpids){ unchecked_call("kill $pid"); }
+ for my $cmd (@cleanupcmds){ unchecked_call("$cmd"); }
+ exit 1;
+};
+# Always call cleanup, no matter how we exit
+*CORE::GLOBAL::exit = sub{ cleanup(); };
+$SIG{INT} = "cleanup";
+$SIG{TERM} = "cleanup";
+$SIG{HUP} = "cleanup";
+
+my $decoderBase = basename($decoder); chomp $decoderBase;
+my $newIniFile = "$dir/$decoderBase.ini";
+my $inputFileName = "$dir/input";
+my $user = $ENV{"USER"};
+
+# process ini file
+-e $iniFile || die "Error: could not open $iniFile for reading\n";
+
+sub dirsize {
+ opendir ISEMPTY,$_[0];
+ return scalar(readdir(ISEMPTY))-1;
+}
+if (-e $dir) {
+ # allow preexisting logfile, binaries, but not dist-dpmert.pl outputs
+ die "ERROR: output directory $dir already exists (remove or use --output-dir dir)\n\n";
+} else {
+ mkdir "$dir" or die "Can't mkdir $dir: $!";
+ mkdir "$dir/hgs" or die;
+ mkdir "$dir/scripts" or die;
+ print STDERR <<EOT;
+ DECODER: $decoder
+ INI FILE: $iniFile
+ WORKING DIR: $dir
+ DEVSET: $devset
+ EVAL METRIC: $metric
+ MAX ITERATIONS: $max_iterations
+ PARALLEL JOBS: $jobs
+ HEAD NODE: $host
+ PMEM (DECODING): $pmem
+ INITIAL WEIGHTS: $initialWeights
+EOT
+}
+
+# Generate initial files and values
+check_call("cp $iniFile $newIniFile");
+check_call("cp $initialWeights $dir/weights.0");
+$iniFile = $newIniFile;
+
+split_devset($devset, "$dir/dev.input.raw", "$dir/dev.refs");
+my $refs = "-r $dir/dev.refs";
+my $newsrc = "$dir/dev.input";
+enseg("$dir/dev.input.raw", $newsrc);
+$srcFile = $newsrc;
+my $devSize = 0;
+open F, "<$srcFile" or die "Can't read $srcFile: $!";
+while(<F>) { $devSize++; }
+close F;
+
+unless($best_weights){ $best_weights = $weights; }
+unless($projected_score){ $projected_score = 0.0; }
+$seen_weights{$weights} = 1;
+
+my $random_seed = int(time / 1000);
+my $lastWeightsFile;
+my $lastPScore = 0;
+# main optimization loop
+while (1){
+ print STDERR "\n\nITERATION $iteration\n==========\n";
+
+ if ($iteration > $max_iterations){
+ print STDERR "\nREACHED STOPPING CRITERION: Maximum iterations\n";
+ last;
+ }
+ # iteration-specific files
+ my $runFile="$dir/run.raw.$iteration";
+ my $onebestFile="$dir/1best.$iteration";
+ my $logdir="$dir/logs.$iteration";
+ my $decoderLog="$logdir/decoder.sentserver.log.$iteration";
+ my $scorerLog="$logdir/scorer.log.$iteration";
+ check_call("mkdir -p $logdir");
+
+
+ #decode
+ print STDERR "RUNNING DECODER AT ";
+ print STDERR unchecked_output("date");
+ my $im1 = $iteration - 1;
+ my $weightsFile="$dir/weights.$im1";
+ my $decoder_cmd = "$decoder -c $iniFile --weights$pass_suffix $weightsFile -O $dir/hgs";
+ my $pcmd;
+ if ($use_make) {
+ $pcmd = "cat $srcFile | $parallelize --workdir $dir --use-fork -p $pmem -e $logdir -j $jobs --";
+ } else {
+ $pcmd = "cat $srcFile | $parallelize --workdir $dir -p $pmem -e $logdir -j $jobs --";
+ }
+ my $cmd = "$pcmd $decoder_cmd 2> $decoderLog 1> $runFile";
+ print STDERR "COMMAND:\n$cmd\n";
+ check_bash_call($cmd);
+ my $num_hgs;
+ my $num_topbest;
+ my $retries = 0;
+ while($retries < 5) {
+ $num_hgs = check_output("ls $dir/hgs/*.gz | wc -l");
+ $num_topbest = check_output("wc -l < $runFile");
+ print STDERR "NUMBER OF HGs: $num_hgs\n";
+ print STDERR "NUMBER OF TOP-BEST HYPs: $num_topbest\n";
+ if($devSize == $num_hgs && $devSize == $num_topbest) {
+ last;
+ } else {
+ print STDERR "Incorrect number of hypergraphs or topbest. Waiting for distributed filesystem and retrying...\n";
+ sleep(3);
+ }
+ $retries++;
+ }
+ die "Dev set contains $devSize sentences, but we don't have topbest and hypergraphs for all these! Decoder failure? Check $decoderLog\n" if ($devSize != $num_hgs || $devSize != $num_topbest);
+ my $dec_score = check_output("cat $runFile | $SCORER $refs -m $metric");
+ chomp $dec_score;
+ print STDERR "DECODER SCORE: $dec_score\n";
+
+ # save space
+ check_call("gzip -f $runFile");
+ check_call("gzip -f $decoderLog");
+
+ # run optimizer
+ print STDERR "RUNNING OPTIMIZER AT ";
+ print STDERR unchecked_output("date");
+ my $mergeLog="$logdir/prune-merge.log.$iteration";
+
+ my $score = 0;
+ my $icc = 0;
+ my $inweights="$dir/weights.$im1";
+ for (my $opt_iter=1; $opt_iter<$optimization_iters; $opt_iter++) {
+ print STDERR "\nGENERATE OPTIMIZATION STRATEGY (OPT-ITERATION $opt_iter/$optimization_iters)\n";
+ print STDERR unchecked_output("date");
+ $icc++;
+ $cmd="$MAPINPUT -w $inweights -r $dir/hgs -s $devSize -d $rand_directions > $dir/agenda.$im1-$opt_iter";
+ print STDERR "COMMAND:\n$cmd\n";
+ check_call($cmd);
+ check_call("mkdir -p $dir/splag.$im1");
+ $cmd="split -a 3 -l $lines_per_mapper $dir/agenda.$im1-$opt_iter $dir/splag.$im1/mapinput.";
+ print STDERR "COMMAND:\n$cmd\n";
+ check_call($cmd);
+ opendir(DIR, "$dir/splag.$im1") or die "Can't open directory: $!";
+ my @shards = grep { /^mapinput\./ } readdir(DIR);
+ closedir DIR;
+ die "No shards!" unless scalar @shards > 0;
+ my $joblist = "";
+ my $nmappers = 0;
+ my @mapoutputs = ();
+ @cleanupcmds = ();
+ my %o2i = ();
+ my $first_shard = 1;
+ my $mkfile; # only used with makefiles
+ my $mkfilename;
+ if ($use_make) {
+ $mkfilename = "$dir/splag.$im1/domap.mk";
+ open $mkfile, ">$mkfilename" or die "Couldn't write $mkfilename: $!";
+ print $mkfile "all: $dir/splag.$im1/map.done\n\n";
+ }
+ my @mkouts = (); # only used with makefiles
+ for my $shard (@shards) {
+ my $mapoutput = $shard;
+ my $client_name = $shard;
+ $client_name =~ s/mapinput.//;
+ $client_name = "dpmert.$client_name";
+ $mapoutput =~ s/mapinput/mapoutput/;
+ push @mapoutputs, "$dir/splag.$im1/$mapoutput";
+ $o2i{"$dir/splag.$im1/$mapoutput"} = "$dir/splag.$im1/$shard";
+ my $script = "$MAPPER -s $srcFile -m $metric $refs < $dir/splag.$im1/$shard | sort -t \$'\\t' -k 1 > $dir/splag.$im1/$mapoutput";
+ if ($use_make) {
+ my $script_file = "$dir/scripts/map.$shard";
+ open F, ">$script_file" or die "Can't write $script_file: $!";
+ print F "#!/bin/bash\n";
+ print F "$script\n";
+ close F;
+ my $output = "$dir/splag.$im1/$mapoutput";
+ push @mkouts, $output;
+ chmod(0755, $script_file) or die "Can't chmod $script_file: $!";
+ if ($first_shard) { print STDERR "$script\n"; $first_shard=0; }
+ print $mkfile "$output: $dir/splag.$im1/$shard\n\t$script_file\n\n";
+ } else {
+ my $script_file = "$dir/scripts/map.$shard";
+ open F, ">$script_file" or die "Can't write $script_file: $!";
+ print F "$script\n";
+ close F;
+ if ($first_shard) { print STDERR "$script\n"; $first_shard=0; }
+
+ $nmappers++;
+ my $qcmd = "$QSUB_CMD -N $client_name -o /dev/null -e $logdir/$client_name.ER $script_file";
+ my $jobid = check_output("$qcmd");
+ chomp $jobid;
+ $jobid =~ s/^(\d+)(.*?)$/\1/g;
+ $jobid =~ s/^Your job (\d+) .*$/\1/;
+ push(@cleanupcmds, "qdel $jobid 2> /dev/null");
+ print STDERR " $jobid";
+ if ($joblist == "") { $joblist = $jobid; }
+ else {$joblist = $joblist . "\|" . $jobid; }
+ }
+ }
+ if ($use_make) {
+ print $mkfile "$dir/splag.$im1/map.done: @mkouts\n\ttouch $dir/splag.$im1/map.done\n\n";
+ close $mkfile;
+ my $mcmd = "make -j $jobs -f $mkfilename";
+ print STDERR "\nExecuting: $mcmd\n";
+ check_call($mcmd);
+ } else {
+ print STDERR "\nLaunched $nmappers mappers.\n";
+ sleep 8;
+ print STDERR "Waiting for mappers to complete...\n";
+ while ($nmappers > 0) {
+ sleep 5;
+ my @livejobs = grep(/$joblist/, split(/\n/, unchecked_output("qstat | grep -v ' C '")));
+ $nmappers = scalar @livejobs;
+ }
+ print STDERR "All mappers complete.\n";
+ }
+ my $tol = 0;
+ my $til = 0;
+ for my $mo (@mapoutputs) {
+ my $olines = get_lines($mo);
+ my $ilines = get_lines($o2i{$mo});
+ $tol += $olines;
+ $til += $ilines;
+ die "$mo: output lines ($olines) doesn't match input lines ($ilines)" unless $olines==$ilines;
+ }
+ print STDERR "Results for $tol/$til lines\n";
+ print STDERR "\nSORTING AND RUNNING VEST REDUCER\n";
+ print STDERR unchecked_output("date");
+ $cmd="sort -t \$'\\t' -k 1 @mapoutputs | $REDUCER -m $metric > $dir/redoutput.$im1";
+ print STDERR "COMMAND:\n$cmd\n";
+ check_bash_call($cmd);
+ $cmd="sort -nk3 $DIR_FLAG '-t|' $dir/redoutput.$im1 | head -1";
+ # sort returns failure even when it doesn't fail for some reason
+ my $best=unchecked_output("$cmd"); chomp $best;
+ print STDERR "$best\n";
+ my ($oa, $x, $xscore) = split /\|/, $best;
+ $score = $xscore;
+ print STDERR "PROJECTED SCORE: $score\n";
+ if (abs($x) < $epsilon) {
+ print STDERR "\nOPTIMIZER: no score improvement: abs($x) < $epsilon\n";
+ last;
+ }
+ my $psd = $score - $last_score;
+ $last_score = $score;
+ if (abs($psd) < $epsilon) {
+ print STDERR "\nOPTIMIZER: no score improvement: abs($psd) < $epsilon\n";
+ last;
+ }
+ my ($origin, $axis) = split /\s+/, $oa;
+
+ my %ori = convert($origin);
+ my %axi = convert($axis);
+
+ my $finalFile="$dir/weights.$im1-$opt_iter";
+ open W, ">$finalFile" or die "Can't write: $finalFile: $!";
+ my $norm = 0;
+ for my $k (sort keys %ori) {
+ my $dd = $ori{$k} + $axi{$k} * $x;
+ $norm += $dd * $dd;
+ }
+ $norm = sqrt($norm);
+ $norm = 1;
+ for my $k (sort keys %ori) {
+ my $v = ($ori{$k} + $axi{$k} * $x) / $norm;
+ print W "$k $v\n";
+ }
+ check_call("rm $dir/splag.$im1/*");
+ $inweights = $finalFile;
+ }
+ $lastWeightsFile = "$dir/weights.$iteration";
+ check_call("cp $inweights $lastWeightsFile");
+ if ($icc < 2) {
+ print STDERR "\nREACHED STOPPING CRITERION: score change too little\n";
+ last;
+ }
+ $lastPScore = $score;
+ $iteration++;
+ print STDERR "\n==========\n";
+}
+
+check_call("cp $lastWeightsFile $dir/weights.final");
+print STDERR "\nFINAL WEIGHTS: $dir/weights.final\n(Use -w <this file> with the decoder)\n\n";
+print STDOUT "$dir/weights.final\n";
+exit 0;
+
+
+sub get_lines {
+ my $fn = shift @_;
+ open FL, "<$fn" or die "Couldn't read $fn: $!";
+ my $lc = 0;
+ while(<FL>) { $lc++; }
+ return $lc;
+}
+
+sub read_weights_file {
+ my ($file) = @_;
+ open F, "<$file" or die "Couldn't read $file: $!";
+ my @r = ();
+ my $pm = -1;
+ while(<F>) {
+ next if /^#/;
+ next if /^\s*$/;
+ chomp;
+ if (/^(.+)\s+(.+)$/) {
+ my $m = $1;
+ my $w = $2;
+ die "Weights out of order: $m <= $pm" unless $m > $pm;
+ push @r, $w;
+ } else {
+ warn "Unexpected feature name in weight file: $_";
+ }
+ }
+ close F;
+ return join ' ', @r;
+}
+
+sub update_weights_file {
+ my ($neww, $rfn, $rpts) = @_;
+ my @feats = @$rfn;
+ my @pts = @$rpts;
+ my $num_feats = scalar @feats;
+ my $num_pts = scalar @pts;
+ die "$num_feats (num_feats) != $num_pts (num_pts)" unless $num_feats == $num_pts;
+ open G, ">$neww" or die;
+ for (my $i = 0; $i < $num_feats; $i++) {
+ my $f = $feats[$i];
+ my $lambda = $pts[$i];
+ print G "$f $lambda\n";
+ }
+ close G;
+}
+
+sub enseg {
+ my $src = shift;
+ my $newsrc = shift;
+ open(SRC, $src);
+ open(NEWSRC, ">$newsrc");
+ my $i=0;
+ while (my $line=<SRC>){
+ chomp $line;
+ if ($line =~ /^\s*<seg/i) {
+ if($line =~ /id="[0-9]+"/) {
+ print NEWSRC "$line\n";
+ } else {
+ die "When using segments with pre-generated <seg> tags, you must include a zero-based id attribute";
+ }
+ } else {
+ print NEWSRC "<seg id=\"$i\">$line</seg>\n";
+ }
+ $i++;
+ }
+ close SRC;
+ close NEWSRC;
+}
+
+sub print_help {
+
+ my $executable = basename($0); chomp $executable;
+ print << "Help";
+
+Usage: $executable [options] <ini file>
+
+ $executable [options]
+ Runs a complete MERT optimization. Required options are --weights,
+ --devset, and --config.
+
+Options:
+
+ --config <file> [-c <file>]
+ The decoder configuration file.
+
+ --devset <file> [-d <file>]
+ The source *and* references for the development set.
+
+ --weights <file> [-w <file>]
+ A file specifying initial feature weights. The format is
+ FeatureName_1 value1
+ FeatureName_2 value2
+ **All and only the weights listed in <file> will be optimized!**
+
+ --metric <name>
+ Metric to optimize.
+ Example values: IBM_BLEU, NIST_BLEU, Koehn_BLEU, TER, Combi
+
+ --iterations <M>
+ Maximum number of iterations to run. If not specified, defaults
+ to 10.
+
+ --pass-suffix <S>
+ If the decoder is doing multi-pass decoding, the pass suffix "2",
+ "3", etc., is used to control what iteration of weights is set.
+
+ --rand-directions <num>
+ MERT will attempt to optimize along all of the principle directions,
+ set this parameter to explore other directions. Defaults to 5.
+
+ --output-dir <dir>
+ Directory for intermediate and output files.
+
+ --help
+ Print this message and exit.
+
+Job control options:
+
+ --jobs <I>
+ Number of decoder processes to run in parallel. [default=$default_jobs]
+
+ --qsub
+ Use qsub to run jobs in parallel (qsub must be configured in
+ environment/LocalEnvironment.pm)
+
+ --pmem <N>
+ Amount of physical memory requested for parallel decoding jobs
+ (used with qsub requests only)
+
+Help
+}
+
+sub convert {
+ my ($str) = @_;
+ my @ps = split /;/, $str;
+ my %dict = ();
+ for my $p (@ps) {
+ my ($k, $v) = split /=/, $p;
+ $dict{$k} = $v;
+ }
+ return %dict;
+}
+
+
+
+sub cmdline {
+ return join ' ',($0,@ORIG_ARGV);
+}
+
+#buggy: last arg gets quoted sometimes?
+my $is_shell_special=qr{[ \t\n\\><|&;"'`~*?{}$!()]};
+my $shell_escape_in_quote=qr{[\\"\$`!]};
+
+sub escape_shell {
+ my ($arg)=@_;
+ return undef unless defined $arg;
+ if ($arg =~ /$is_shell_special/) {
+ $arg =~ s/($shell_escape_in_quote)/\\$1/g;
+ return "\"$arg\"";
+ }
+ return $arg;
+}
+
+sub escaped_shell_args {
+ return map {local $_=$_;chomp;escape_shell($_)} @_;
+}
+
+sub escaped_shell_args_str {
+ return join ' ',&escaped_shell_args(@_);
+}
+
+sub escaped_cmdline {
+ return "$0 ".&escaped_shell_args_str(@ORIG_ARGV);
+}
+
+sub split_devset {
+ my ($infile, $outsrc, $outref) = @_;
+ open F, "<$infile" or die "Can't read $infile: $!";
+ open S, ">$outsrc" or die "Can't write $outsrc: $!";
+ open R, ">$outref" or die "Can't write $outref: $!";
+ while(<F>) {
+ chomp;
+ my ($src, @refs) = split /\s*\|\|\|\s*/;
+ die "Malformed devset line: $_\n" unless scalar @refs > 0;
+ print S "$src\n";
+ print R join(' ||| ', @refs) . "\n";
+ }
+ close R;
+ close S;
+ close F;
+}
+