Improve the package structure of pycdec

This change should not break anything, but now you can run:

    python setup.py build_ext --inplace

and use the cleaner:

    PYTHONPATH=/path/to/cdec/python python -m ...

1 files changed, 113 insertions, 0 deletions

diff --git a/python/cdec/sa/extract.py b/python/cdec/sa/extract.py
new file mode 100644
index 00000000..b6502c52
--- /dev/null
+++ b/python/cdec/sa/extract.py
@@ -0,0 +1,113 @@
+#!/usr/bin/env python
+import sys
+import os
+import re
+import gzip
+import argparse
+import logging
+import signal
+import multiprocessing as mp
+import cdec.sa
+from cdec.sa._sa import monitor_cpu
+
+extractor, prefix = None, None
+online, compress = False, False
+
+def make_extractor(args):
+    global extractor, prefix, online, compress
+    signal.signal(signal.SIGINT, signal.SIG_IGN) # Let parent process catch Ctrl+C
+    load_features(args.features)
+    extractor = cdec.sa.GrammarExtractor(args.config, online)
+    prefix = args.grammars
+    online = args.online
+    compress = args.compress
+
+def load_features(features):
+    for featdef in features:
+        logging.info('Loading additional feature definitions from %s', featdef)
+        prefix = os.path.dirname(featdef)
+        sys.path.append(prefix)
+        __import__(os.path.basename(featdef).replace('.py', ''))
+        sys.path.remove(prefix)
+
+def extract(inp):
+    global extractor, prefix, online, compress
+    i, sentence = inp
+    sentence = sentence[:-1]
+    fields = re.split('\s*\|\|\|\s*', sentence)
+    suffix = ''
+    # 3 fields for online mode, 1 for normal
+    if online:
+        if len(fields) < 3:
+            sys.stderr.write('Error: online mode requires references and alignments.'
+                    '  Not adding sentence to training data: {}\n'.format(sentence))
+            sentence = fields[0]
+        else:
+            sentence, reference, alignment = fields[0:3]
+        if len(fields) > 3:
+            suffix = ' ||| ' + ' ||| '.join(fields[3:])
+    else:
+        if len(fields) > 1:
+            sentence = fields[0]
+            suffix = ' ||| ' + ' ||| '.join(fields[1:])
+
+    grammar_file = os.path.join(prefix, 'grammar.'+str(i))
+    if compress: grammar_file += '.gz'
+    with (gzip.open if compress else open)(grammar_file, 'w') as output:
+        for rule in extractor.grammar(sentence):
+            output.write(str(rule)+'\n')
+    # Add training instance _after_ extracting grammars
+    if online:
+        extractor.add_instance(sentence, reference, alignment)
+    grammar_file = os.path.abspath(grammar_file)
+    return '<seg grammar="{}" id="{}">{}</seg>{}'.format(grammar_file, i, sentence, suffix)
+
+def main():
+    global online
+    logging.basicConfig(level=logging.INFO)
+    parser = argparse.ArgumentParser(description='Extract grammars from a compiled corpus.')
+    parser.add_argument('-c', '--config', required=True,
+                        help='extractor configuration')
+    parser.add_argument('-g', '--grammars', required=True,
+                        help='grammar output path')
+    parser.add_argument('-j', '--jobs', type=int, default=1,
+                        help='number of parallel extractors')
+    parser.add_argument('-s', '--chunksize', type=int, default=10,
+                        help='number of sentences / chunk')
+    parser.add_argument('-f', '--features', nargs='*', default=[],
+                        help='additional feature definitions')
+    parser.add_argument('-o', '--online', action='store_true',
+                        help='online grammar extraction')
+    parser.add_argument('-z', '--compress', action='store_true',
+                        help='compress grammars with gzip')
+    args = parser.parse_args()
+
+    if not os.path.exists(args.grammars):
+        os.mkdir(args.grammars)
+    for featdef in args.features:
+        if not featdef.endswith('.py'):
+            sys.stderr.write('Error: feature definition file <{}>'
+                    ' should be a python module\n'.format(featdef))
+            sys.exit(1)
+
+    online = args.online
+
+    start_time = monitor_cpu()
+    if args.jobs > 1:
+        logging.info('Starting %d workers; chunk size: %d', args.jobs, args.chunksize)
+        pool = mp.Pool(args.jobs, make_extractor, (args,))
+        try:
+            for output in pool.imap(extract, enumerate(sys.stdin), args.chunksize):
+                print(output)
+        except KeyboardInterrupt:
+            pool.terminate()
+    else:
+        make_extractor(args)
+        for output in map(extract, enumerate(sys.stdin)):
+            print(output)
+
+    stop_time = monitor_cpu()
+    logging.info("Overall extraction step took %f seconds", stop_time - start_time)
+
+if __name__ == '__main__':
+    main()