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authorPatrick Simianer <simianer@cl.uni-heidelberg.de>2012-06-26 14:47:46 +0200
committerPatrick Simianer <simianer@cl.uni-heidelberg.de>2012-06-26 14:47:46 +0200
commit3c03e716a8638163a820dbecf652c772e6d651f2 (patch)
tree255e2aa075b9a4c2a2fb1c077e899afdc5654c19 /minrisk/minrisk.pl
parentd04c516536db996e5fe5b94b8e5dea4ce2e04b4a (diff)
parente1b85b4f02045c62400b9c755883e7fae14557f6 (diff)
Merge remote-tracking branch 'upstream/master'
Diffstat (limited to 'minrisk/minrisk.pl')
-rwxr-xr-xminrisk/minrisk.pl540
1 files changed, 540 insertions, 0 deletions
diff --git a/minrisk/minrisk.pl b/minrisk/minrisk.pl
new file mode 100755
index 00000000..99893a66
--- /dev/null
+++ b/minrisk/minrisk.pl
@@ -0,0 +1,540 @@
+#!/usr/bin/env perl
+use strict;
+my @ORIG_ARGV=@ARGV;
+use Cwd qw(getcwd);
+my $SCRIPT_DIR; BEGIN { use Cwd qw/ abs_path /; use File::Basename; $SCRIPT_DIR = dirname(abs_path($0)); push @INC, $SCRIPT_DIR, "$SCRIPT_DIR/../environment"; }
+
+# Skip local config (used for distributing jobs) if we're running in local-only mode
+use LocalConfig;
+use Getopt::Long;
+use IPC::Open2;
+use POSIX ":sys_wait_h";
+my $QSUB_CMD = qsub_args(mert_memory());
+my $default_jobs = env_default_jobs();
+
+my $VEST_DIR="$SCRIPT_DIR/../dpmert";
+require "$VEST_DIR/libcall.pl";
+
+# Default settings
+my $srcFile;
+my $refFiles;
+my $bin_dir = $SCRIPT_DIR;
+die "Bin directory $bin_dir missing/inaccessible" unless -d $bin_dir;
+my $FAST_SCORE="$bin_dir/../mteval/fast_score";
+die "Can't execute $FAST_SCORE" unless -x $FAST_SCORE;
+my $MAPINPUT = "$bin_dir/minrisk_generate_input.pl";
+my $MAPPER = "$bin_dir/minrisk_optimize";
+my $parallelize = "$VEST_DIR/parallelize.pl";
+my $libcall = "$VEST_DIR/libcall.pl";
+my $sentserver = "$VEST_DIR/sentserver";
+my $sentclient = "$VEST_DIR/sentclient";
+my $LocalConfig = "$SCRIPT_DIR/../environment/LocalConfig.pm";
+
+my $SCORER = $FAST_SCORE;
+die "Can't find $MAPPER" unless -x $MAPPER;
+my $cdec = "$bin_dir/../decoder/cdec";
+die "Can't find decoder in $cdec" unless -x $cdec;
+die "Can't find $parallelize" unless -x $parallelize;
+die "Can't find $libcall" unless -e $libcall;
+my $decoder = $cdec;
+my $lines_per_mapper = 30;
+my $iteration = 1;
+my $best_weights;
+my $psi = 1;
+my $default_max_iter = 30;
+my $max_iterations = $default_max_iter;
+my $jobs = $default_jobs; # number of decode nodes
+my $pmem = "4g";
+my $disable_clean = 0;
+my %seen_weights;
+my $help = 0;
+my $epsilon = 0.0001;
+my $dryrun = 0;
+my $last_score = -10000000;
+my $metric = "ibm_bleu";
+my $dir;
+my $iniFile;
+my $weights;
+my $use_make = 1; # use make to parallelize
+my $useqsub = 0;
+my $initial_weights;
+my $pass_suffix = '';
+my $cpbin=1;
+
+# regularization strength
+my $tune_regularizer = 0;
+my $reg = 500;
+my $reg_previous = 5000;
+my $dont_accum = 0;
+
+# Process command-line options
+Getopt::Long::Configure("no_auto_abbrev");
+if (GetOptions(
+ "jobs=i" => \$jobs,
+ "dont-clean" => \$disable_clean,
+ "dont-accumulate" => \$dont_accum,
+ "pass-suffix=s" => \$pass_suffix,
+ "qsub" => \$useqsub,
+ "dry-run" => \$dryrun,
+ "epsilon=s" => \$epsilon,
+ "help" => \$help,
+ "weights=s" => \$initial_weights,
+ "reg=f" => \$reg,
+ "use-make=i" => \$use_make,
+ "max-iterations=i" => \$max_iterations,
+ "pmem=s" => \$pmem,
+ "cpbin!" => \$cpbin,
+ "ref-files=s" => \$refFiles,
+ "metric=s" => \$metric,
+ "source-file=s" => \$srcFile,
+ "workdir=s" => \$dir,
+) == 0 || @ARGV!=1 || $help) {
+ print_help();
+ exit;
+}
+
+die "--tune-regularizer is no longer supported with --reg-previous and --reg. Please tune manually.\n" if $tune_regularizer;
+
+if ($useqsub) {
+ $use_make = 0;
+ die "LocalEnvironment.pm does not have qsub configuration for this host. Cannot run with --qsub!\n" unless has_qsub();
+}
+
+my @missing_args = ();
+if (!defined $srcFile) { push @missing_args, "--source-file"; }
+if (!defined $refFiles) { push @missing_args, "--ref-files"; }
+if (!defined $initial_weights) { push @missing_args, "--weights"; }
+die "Please specify missing arguments: " . join (', ', @missing_args) . "\n" if (@missing_args);
+
+if ($metric =~ /^(combi|ter)$/i) {
+ $lines_per_mapper = 5;
+}
+
+($iniFile) = @ARGV;
+
+
+sub write_config;
+sub enseg;
+sub print_help;
+
+my $nodelist;
+my $host =check_output("hostname"); chomp $host;
+my $bleu;
+my $interval_count = 0;
+my $logfile;
+my $projected_score;
+
+# used in sorting scores
+my $DIR_FLAG = '-r';
+if ($metric =~ /^ter$|^aer$/i) {
+ $DIR_FLAG = '';
+}
+
+my $refs_comma_sep = get_comma_sep_refs('r',$refFiles);
+
+unless ($dir){
+ $dir = "rampion";
+}
+unless ($dir =~ /^\//){ # convert relative path to absolute path
+ my $basedir = check_output("pwd");
+ chomp $basedir;
+ $dir = "$basedir/$dir";
+}
+
+
+# Initializations and helper functions
+srand;
+
+my @childpids = ();
+my @cleanupcmds = ();
+
+sub cleanup {
+ print STDERR "Cleanup...\n";
+ for my $pid (@childpids){ unchecked_call("kill $pid"); }
+ for my $cmd (@cleanupcmds){ unchecked_call("$cmd"); }
+ exit 1;
+};
+# Always call cleanup, no matter how we exit
+*CORE::GLOBAL::exit =
+ sub{ cleanup(); };
+$SIG{INT} = "cleanup";
+$SIG{TERM} = "cleanup";
+$SIG{HUP} = "cleanup";
+
+my $decoderBase = check_output("basename $decoder"); chomp $decoderBase;
+my $newIniFile = "$dir/$decoderBase.ini";
+my $inputFileName = "$dir/input";
+my $user = $ENV{"USER"};
+# process ini file
+-e $iniFile || die "Error: could not open $iniFile for reading\n";
+open(INI, $iniFile);
+
+use File::Basename qw(basename);
+#pass bindir, refs to vars holding bin
+sub modbin {
+ local $_;
+ my $bindir=shift;
+ check_call("mkdir -p $bindir");
+ -d $bindir || die "couldn't make bindir $bindir";
+ for (@_) {
+ my $src=$$_;
+ $$_="$bindir/".basename($src);
+ check_call("cp -p $src $$_");
+ }
+}
+sub dirsize {
+ opendir ISEMPTY,$_[0];
+ return scalar(readdir(ISEMPTY))-1;
+}
+my @allweights;
+if ($dryrun){
+ write_config(*STDERR);
+ exit 0;
+} else {
+ if (-e $dir && dirsize($dir)>1 && -e "$dir/hgs" ){ # allow preexisting logfile, binaries, but not dist-pro.pl outputs
+ die "ERROR: working dir $dir already exists\n\n";
+ } else {
+ -e $dir || mkdir $dir;
+ mkdir "$dir/hgs";
+ modbin("$dir/bin",\$LocalConfig,\$cdec,\$SCORER,\$MAPINPUT,\$MAPPER,\$parallelize,\$sentserver,\$sentclient,\$libcall) if $cpbin;
+ mkdir "$dir/scripts";
+ my $cmdfile="$dir/rerun-pro.sh";
+ open CMD,'>',$cmdfile;
+ print CMD "cd ",&getcwd,"\n";
+# print CMD &escaped_cmdline,"\n"; #buggy - last arg is quoted.
+ my $cline=&cmdline."\n";
+ print CMD $cline;
+ close CMD;
+ print STDERR $cline;
+ chmod(0755,$cmdfile);
+ check_call("cp $initial_weights $dir/weights.0");
+ die "Can't find weights.0" unless (-e "$dir/weights.0");
+ }
+ write_config(*STDERR);
+}
+
+
+# Generate initial files and values
+check_call("cp $iniFile $newIniFile");
+$iniFile = $newIniFile;
+
+my $newsrc = "$dir/dev.input";
+enseg($srcFile, $newsrc);
+$srcFile = $newsrc;
+my $devSize = 0;
+open F, "<$srcFile" or die "Can't read $srcFile: $!";
+while(<F>) { $devSize++; }
+close F;
+
+unless($best_weights){ $best_weights = $weights; }
+unless($projected_score){ $projected_score = 0.0; }
+$seen_weights{$weights} = 1;
+my $kbest = "$dir/kbest";
+if ($dont_accum) {
+ $kbest = '';
+} else {
+ check_call("mkdir -p $kbest");
+ $kbest = "--kbest_repository $kbest";
+}
+
+my $random_seed = int(time / 1000);
+my $lastWeightsFile;
+my $lastPScore = 0;
+# main optimization loop
+while (1){
+ print STDERR "\n\nITERATION $iteration\n==========\n";
+
+ if ($iteration > $max_iterations){
+ print STDERR "\nREACHED STOPPING CRITERION: Maximum iterations\n";
+ last;
+ }
+ # iteration-specific files
+ my $runFile="$dir/run.raw.$iteration";
+ my $onebestFile="$dir/1best.$iteration";
+ my $logdir="$dir/logs.$iteration";
+ my $decoderLog="$logdir/decoder.sentserver.log.$iteration";
+ my $scorerLog="$logdir/scorer.log.$iteration";
+ check_call("mkdir -p $logdir");
+
+
+ #decode
+ print STDERR "RUNNING DECODER AT ";
+ print STDERR unchecked_output("date");
+ my $im1 = $iteration - 1;
+ my $weightsFile="$dir/weights.$im1";
+ push @allweights, "-w $dir/weights.$im1";
+ `rm -f $dir/hgs/*.gz`;
+ my $decoder_cmd = "$decoder -c $iniFile --weights$pass_suffix $weightsFile -O $dir/hgs";
+ my $pcmd;
+ if ($use_make) {
+ $pcmd = "cat $srcFile | $parallelize --use-fork -p $pmem -e $logdir -j $jobs --";
+ } else {
+ $pcmd = "cat $srcFile | $parallelize -p $pmem -e $logdir -j $jobs --";
+ }
+ my $cmd = "$pcmd $decoder_cmd 2> $decoderLog 1> $runFile";
+ print STDERR "COMMAND:\n$cmd\n";
+ check_bash_call($cmd);
+ my $num_hgs;
+ my $num_topbest;
+ my $retries = 0;
+ while($retries < 5) {
+ $num_hgs = check_output("ls $dir/hgs/*.gz | wc -l");
+ $num_topbest = check_output("wc -l < $runFile");
+ print STDERR "NUMBER OF HGs: $num_hgs\n";
+ print STDERR "NUMBER OF TOP-BEST HYPs: $num_topbest\n";
+ if($devSize == $num_hgs && $devSize == $num_topbest) {
+ last;
+ } else {
+ print STDERR "Incorrect number of hypergraphs or topbest. Waiting for distributed filesystem and retrying...\n";
+ sleep(3);
+ }
+ $retries++;
+ }
+ die "Dev set contains $devSize sentences, but we don't have topbest and hypergraphs for all these! Decoder failure? Check $decoderLog\n" if ($devSize != $num_hgs || $devSize != $num_topbest);
+ my $dec_score = check_output("cat $runFile | $SCORER $refs_comma_sep -m $metric");
+ chomp $dec_score;
+ print STDERR "DECODER SCORE: $dec_score\n";
+
+ # save space
+ check_call("gzip -f $runFile");
+ check_call("gzip -f $decoderLog");
+
+ # run optimizer
+ print STDERR "RUNNING OPTIMIZER AT ";
+ print STDERR unchecked_output("date");
+ print STDERR " - GENERATE TRAINING EXEMPLARS\n";
+ my $mergeLog="$logdir/prune-merge.log.$iteration";
+
+ my $score = 0;
+ my $icc = 0;
+ my $inweights="$dir/weights.$im1";
+ my $outweights="$dir/weights.$iteration";
+ $cmd="$MAPINPUT $dir/hgs > $dir/agenda.$im1";
+ print STDERR "COMMAND:\n$cmd\n";
+ check_call($cmd);
+ $cmd="$MAPPER $refs_comma_sep -m $metric -i $dir/agenda.$im1 $kbest -w $inweights > $outweights";
+ check_call($cmd);
+ $lastWeightsFile = $outweights;
+ $iteration++;
+ `rm hgs/*.gz`;
+ print STDERR "\n==========\n";
+}
+
+print STDERR "\nFINAL WEIGHTS: $lastWeightsFile\n(Use -w <this file> with the decoder)\n\n";
+
+print STDOUT "$lastWeightsFile\n";
+
+exit 0;
+
+sub get_lines {
+ my $fn = shift @_;
+ open FL, "<$fn" or die "Couldn't read $fn: $!";
+ my $lc = 0;
+ while(<FL>) { $lc++; }
+ return $lc;
+}
+
+sub get_comma_sep_refs {
+ my ($r,$p) = @_;
+ my $o = check_output("echo $p");
+ chomp $o;
+ my @files = split /\s+/, $o;
+ return "-$r " . join(" -$r ", @files);
+}
+
+sub read_weights_file {
+ my ($file) = @_;
+ open F, "<$file" or die "Couldn't read $file: $!";
+ my @r = ();
+ my $pm = -1;
+ while(<F>) {
+ next if /^#/;
+ next if /^\s*$/;
+ chomp;
+ if (/^(.+)\s+(.+)$/) {
+ my $m = $1;
+ my $w = $2;
+ die "Weights out of order: $m <= $pm" unless $m > $pm;
+ push @r, $w;
+ } else {
+ warn "Unexpected feature name in weight file: $_";
+ }
+ }
+ close F;
+ return join ' ', @r;
+}
+
+# subs
+sub write_config {
+ my $fh = shift;
+ my $cleanup = "yes";
+ if ($disable_clean) {$cleanup = "no";}
+
+ print $fh "\n";
+ print $fh "DECODER: $decoder\n";
+ print $fh "INI FILE: $iniFile\n";
+ print $fh "WORKING DIR: $dir\n";
+ print $fh "SOURCE (DEV): $srcFile\n";
+ print $fh "REFS (DEV): $refFiles\n";
+ print $fh "EVAL METRIC: $metric\n";
+ print $fh "MAX ITERATIONS: $max_iterations\n";
+ print $fh "JOBS: $jobs\n";
+ print $fh "HEAD NODE: $host\n";
+ print $fh "PMEM (DECODING): $pmem\n";
+ print $fh "CLEANUP: $cleanup\n";
+}
+
+sub update_weights_file {
+ my ($neww, $rfn, $rpts) = @_;
+ my @feats = @$rfn;
+ my @pts = @$rpts;
+ my $num_feats = scalar @feats;
+ my $num_pts = scalar @pts;
+ die "$num_feats (num_feats) != $num_pts (num_pts)" unless $num_feats == $num_pts;
+ open G, ">$neww" or die;
+ for (my $i = 0; $i < $num_feats; $i++) {
+ my $f = $feats[$i];
+ my $lambda = $pts[$i];
+ print G "$f $lambda\n";
+ }
+ close G;
+}
+
+sub enseg {
+ my $src = shift;
+ my $newsrc = shift;
+ open(SRC, $src);
+ open(NEWSRC, ">$newsrc");
+ my $i=0;
+ while (my $line=<SRC>){
+ chomp $line;
+ if ($line =~ /^\s*<seg/i) {
+ if($line =~ /id="[0-9]+"/) {
+ print NEWSRC "$line\n";
+ } else {
+ die "When using segments with pre-generated <seg> tags, you must include a zero-based id attribute";
+ }
+ } else {
+ print NEWSRC "<seg id=\"$i\">$line</seg>\n";
+ }
+ $i++;
+ }
+ close SRC;
+ close NEWSRC;
+ die "Empty dev set!" if ($i == 0);
+}
+
+sub print_help {
+
+ my $executable = check_output("basename $0"); chomp $executable;
+ print << "Help";
+
+Usage: $executable [options] <ini file>
+
+ $executable [options] <ini file>
+ Runs a complete PRO optimization using the ini file specified.
+
+Required:
+
+ --ref-files <files>
+ Dev set ref files. This option takes only a single string argument.
+ To use multiple files (including file globbing), this argument should
+ be quoted.
+
+ --source-file <file>
+ Dev set source file.
+
+ --weights <file>
+ Initial weights file (use empty file to start from 0)
+
+General options:
+
+ --help
+ Print this message and exit.
+
+ --dont-accumulate
+ Don't accumulate k-best lists from multiple iterations.
+
+ --max-iterations <M>
+ Maximum number of iterations to run. If not specified, defaults
+ to $default_max_iter.
+
+ --metric <method>
+ Metric to optimize.
+ Example values: IBM_BLEU, NIST_BLEU, Koehn_BLEU, TER, Combi
+
+ --pass-suffix <S>
+ If the decoder is doing multi-pass decoding, the pass suffix "2",
+ "3", etc., is used to control what iteration of weights is set.
+
+ --workdir <dir>
+ Directory for intermediate and output files. If not specified, the
+ name is derived from the ini filename. Assuming that the ini
+ filename begins with the decoder name and ends with ini, the default
+ name of the working directory is inferred from the middle part of
+ the filename. E.g. an ini file named decoder.foo.ini would have
+ a default working directory name foo.
+
+Regularization options:
+
+ --reg <F>
+ l2 regularization strength [default=500]. The greater this value,
+ the closer to zero the weights will be.
+
+Job control options:
+
+ --jobs <I>
+ Number of decoder processes to run in parallel. [default=$default_jobs]
+
+ --qsub
+ Use qsub to run jobs in parallel (qsub must be configured in
+ environment/LocalEnvironment.pm)
+
+ --pmem <N>
+ Amount of physical memory requested for parallel decoding jobs
+ (used with qsub requests only)
+
+Help
+}
+
+sub convert {
+ my ($str) = @_;
+ my @ps = split /;/, $str;
+ my %dict = ();
+ for my $p (@ps) {
+ my ($k, $v) = split /=/, $p;
+ $dict{$k} = $v;
+ }
+ return %dict;
+}
+
+
+sub cmdline {
+ return join ' ',($0,@ORIG_ARGV);
+}
+
+#buggy: last arg gets quoted sometimes?
+my $is_shell_special=qr{[ \t\n\\><|&;"'`~*?{}$!()]};
+my $shell_escape_in_quote=qr{[\\"\$`!]};
+
+sub escape_shell {
+ my ($arg)=@_;
+ return undef unless defined $arg;
+ if ($arg =~ /$is_shell_special/) {
+ $arg =~ s/($shell_escape_in_quote)/\\$1/g;
+ return "\"$arg\"";
+ }
+ return $arg;
+}
+
+sub escaped_shell_args {
+ return map {local $_=$_;chomp;escape_shell($_)} @_;
+}
+
+sub escaped_shell_args_str {
+ return join ' ',&escaped_shell_args(@_);
+}
+
+sub escaped_cmdline {
+ return "$0 ".&escaped_shell_args_str(@ORIG_ARGV);
+}