1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
|
package LocalConfig;
use strict;
use warnings;
use base 'Exporter';
our @EXPORT = qw( qsub_args mert_memory environment_name );
use Net::Domain qw(hostname hostfqdn hostdomain domainname);
my $host = domainname;
# keys are: HOST_REGEXP, MERTMem, QSubQueue, QSubMemFlag, QSubExtraFlags
my $CCONFIG = {
'LTICluster' => {
'HOST_REGEXP' => qr/^cluster\d+\.lti\.cs\.cmu\.edu$/,
'QSubMemFlag' => '-l h_vmem=',
'QSubExtraFlags' => '-l walltime=0:45:00',
#'QSubQueue' => '-q long',
},
'UMIACS' => {
'HOST_REGEXP' => qr/^d.*\.umiacs\.umd\.edu$/,
'QSubMemFlag' => '-l pmem=',
'QSubQueue' => '-q batch',
'QSubExtraFlags' => '-l walltime=144:00:00',
},
'CLSP' => {
'HOST_REGEXP' => qr/\.clsp\.jhu\.edu$/,
'QSubMemFlag' => '-l mem_free=',
'MERTMem' => '9G',
},
'Valhalla' => {
'HOST_REGEXP' => qr/^(thor|tyr)\.inf\.ed\.ac\.uk$/,
},
'Blacklight' => {
'HOST_REGEXP' => qr/^(blacklight.psc.edu|bl1.psc.teragrid.org)$/,
'QSubMemFlag' => '-l pmem=',
},
'LOCAL' => {
'HOST_REGEXP' => qr/local\.net$/,
'QSubMemFlag' => '',
},
};
our $senvironment_name;
for my $config_key (keys %$CCONFIG) {
my $re = $CCONFIG->{$config_key}->{'HOST_REGEXP'};
die "Can't find HOST_REGEXP for $config_key" unless $re;
if ($host =~ /$re/) {
$senvironment_name = $config_key;
}
}
die "NO ENVIRONMENT INFO FOR HOST: $host\nPLEASE EDIT LocalConfig.pm\n" unless $senvironment_name;
our %CONFIG = %{$CCONFIG->{$senvironment_name}};
print STDERR "**Environment: $senvironment_name\n";
sub environment_name {
return $senvironment_name;
}
sub qsub_args {
my $mem = shift @_;
die "qsub_args requires a memory amount as a parameter, e.g. 4G" unless $mem;
my $mf = $CONFIG{'QSubMemFlag'} or die "QSubMemFlag not set for $senvironment_name";
my $cmd = "qsub -S /bin/bash ${mf}${mem}";
if ($CONFIG{'QSubQueue'}) { $cmd .= ' ' . $CONFIG{'QSubQueue'}; }
if ($CONFIG{'QSubExtraFlags'}) { $cmd .= ' ' . $CONFIG{'QSubExtraFlags'}; }
return $cmd;
}
sub mert_memory {
return ($CONFIG{'MERTMem'} || '2G');
};
1;
|
