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-rwxr-xr-xvest/dist-vest.pl77
1 files changed, 37 insertions, 40 deletions
diff --git a/vest/dist-vest.pl b/vest/dist-vest.pl
index 3139dc73..9a00f17a 100755
--- a/vest/dist-vest.pl
+++ b/vest/dist-vest.pl
@@ -33,7 +33,6 @@ my $run_local = 0;
my $best_weights;
my $max_iterations = 15;
my $optimization_iters = 6;
-my $num_rand_points = 20;
my $decode_nodes = 15; # number of decode nodes
my $pmem = "9g";
my $disable_clean = 0;
@@ -120,9 +119,7 @@ if ($restart){
unless (-e $iniFile){
die "ERROR: Could not find ini file in $dir to restart\n";
}
- $logfile = "$dir/mert.log";
- open(LOGFILE, ">>$logfile");
- print LOGFILE "RESTARTING STOPPED OPTIMIZATION\n\n";
+ print STDERR "RESTARTING STOPPED OPTIMIZATION\n\n";
# figure out best weights so far and iteration number
open(LOG, "$dir/mert.log");
@@ -187,9 +184,9 @@ if ($dryrun){
}
unless($restart){
$logfile = "$dir/mert.log";
- open(LOGFILE, ">$logfile");
+ open(STDERR, ">$logfile");
}
- write_config(*LOGFILE);
+ write_config(*STDERR);
}
@@ -214,7 +211,7 @@ my $lastWeightsFile;
my $lastPScore = 0;
# main optimization loop
while (1){
- print LOGFILE "\n\nITERATION $iteration\n==========\n";
+ print STDERR "\n\nITERATION $iteration\n==========\n";
# iteration-specific files
my $runFile="$dir/run.raw.$iteration";
@@ -225,62 +222,62 @@ while (1){
`mkdir -p $logdir`;
#decode
- print LOGFILE "DECODE\n";
- print LOGFILE `date`;
+ print STDERR "DECODE\n";
+ print STDERR `date`;
my $im1 = $iteration - 1;
my $weightsFile="$dir/weights.$im1";
my $decoder_cmd = "$decoder -c $iniFile -w $weightsFile -O $dir/hgs";
my $pcmd = "cat $srcFile | $parallelize -p $pmem -e $logdir -j $decode_nodes -- ";
if ($run_local) { $pcmd = "cat $srcFile |"; }
my $cmd = $pcmd . "$decoder_cmd 2> $decoderLog 1> $runFile";
- print LOGFILE "COMMAND:\n$cmd\n";
+ print STDERR "COMMAND:\n$cmd\n";
my $result = 0;
$result = system($cmd);
unless ($result == 0){
cleanup();
- print LOGFILE "ERROR: Parallel decoder returned non-zero exit code $result\n";
+ print STDERR "ERROR: Parallel decoder returned non-zero exit code $result\n";
die;
}
my $dec_score = `cat $runFile | $SCORER $refs_comma_sep -l $metric`;
chomp $dec_score;
- print LOGFILE "DECODER SCORE: $dec_score\n";
+ print STDERR "DECODER SCORE: $dec_score\n";
# save space
`gzip $runFile`;
`gzip $decoderLog`;
if ($iteration > $max_iterations){
- print LOGFILE "\nREACHED STOPPING CRITERION: Maximum iterations\n";
+ print STDERR "\nREACHED STOPPING CRITERION: Maximum iterations\n";
last;
}
# run optimizer
- print LOGFILE `date`;
+ print STDERR `date`;
my $mergeLog="$logdir/prune-merge.log.$iteration";
my $score = 0;
my $icc = 0;
my $inweights="$dir/weights.$im1";
for (my $opt_iter=1; $opt_iter<$optimization_iters; $opt_iter++) {
- print LOGFILE "\nGENERATE OPTIMIZATION STRATEGY (OPT-ITERATION $opt_iter/$optimization_iters)\n";
- print LOGFILE `date`;
+ print STDERR "\nGENERATE OPTIMIZATION STRATEGY (OPT-ITERATION $opt_iter/$optimization_iters)\n";
+ print STDERR `date`;
$icc++;
$cmd="$MAPINPUT -w $inweights -r $dir/hgs -s $devSize -d $rand_directions > $dir/agenda.$im1-$opt_iter";
- print LOGFILE "COMMAND:\n$cmd\n";
+ print STDERR "COMMAND:\n$cmd\n";
$result = system($cmd);
unless ($result == 0){
cleanup();
- print LOGFILE "ERROR: mapinput command returned non-zero exit code $result\n";
+ print STDERR "ERROR: mapinput command returned non-zero exit code $result\n";
die;
}
`mkdir $dir/splag.$im1`;
$cmd="split -a 3 -l $lines_per_mapper $dir/agenda.$im1-$opt_iter $dir/splag.$im1/mapinput.";
- print LOGFILE "COMMAND:\n$cmd\n";
+ print STDERR "COMMAND:\n$cmd\n";
$result = system($cmd);
unless ($result == 0){
cleanup();
- print LOGFILE "ERROR: split command returned non-zero exit code $result\n";
+ print STDERR "ERROR: split command returned non-zero exit code $result\n";
die;
}
opendir(DIR, "$dir/splag.$im1") or die "Can't open directory: $!";
@@ -303,11 +300,11 @@ while (1){
$o2i{"$dir/splag.$im1/$mapoutput"} = "$dir/splag.$im1/$shard";
my $script = "$MAPPER -s $srcFile -l $metric $refs_comma_sep < $dir/splag.$im1/$shard | sort -t \$'\\t' -k 1 > $dir/splag.$im1/$mapoutput";
if ($run_local) {
- print LOGFILE "COMMAND:\n$script\n";
+ print STDERR "COMMAND:\n$script\n";
$result = system($script);
unless ($result == 0){
cleanup();
- print LOGFILE "ERROR: mapper returned non-zero exit code $result\n";
+ print STDERR "ERROR: mapper returned non-zero exit code $result\n";
die;
}
} else {
@@ -315,7 +312,7 @@ while (1){
open F, ">$script_file" or die "Can't write $script_file: $!";
print F "$script\n";
close F;
- if ($first_shard) { print LOGFILE "$script\n"; $first_shard=0; }
+ if ($first_shard) { print STDERR "$script\n"; $first_shard=0; }
$nmappers++;
my $jobid = `qsub $QSUB_FLAGS -S /bin/bash -N $client_name -o /dev/null -e $logdir/$client_name.ER $script_file`;
@@ -324,22 +321,22 @@ while (1){
$jobid =~ s/^(\d+)(.*?)$/\1/g;
$jobid =~ s/^Your job (\d+) .*$/\1/;
push(@cleanupcmds, "`qdel $jobid 2> /dev/null`");
- print LOGFILE " $jobid";
+ print STDERR " $jobid";
if ($joblist == "") { $joblist = $jobid; }
else {$joblist = $joblist . "\|" . $jobid; }
}
}
if ($run_local) {
} else {
- print LOGFILE "\nLaunched $nmappers mappers.\n";
+ print STDERR "\nLaunched $nmappers mappers.\n";
sleep 10;
- print LOGFILE "Waiting for mappers to complete...\n";
+ print STDERR "Waiting for mappers to complete...\n";
while ($nmappers > 0) {
sleep 5;
my @livejobs = grep(/$joblist/, split(/\n/, `qstat`));
$nmappers = scalar @livejobs;
}
- print LOGFILE "All mappers complete.\n";
+ print STDERR "All mappers complete.\n";
}
my $tol = 0;
my $til = 0;
@@ -350,31 +347,31 @@ while (1){
$til += $ilines;
die "$mo: output lines ($olines) doesn't match input lines ($ilines)" unless $olines==$ilines;
}
- print LOGFILE "Results for $tol/$til lines\n";
- print LOGFILE "\nSORTING AND RUNNING VEST REDUCER\n";
- print LOGFILE `date`;
+ print STDERR "Results for $tol/$til lines\n";
+ print STDERR "\nSORTING AND RUNNING VEST REDUCER\n";
+ print STDERR `date`;
$cmd="sort -t \$'\\t' -k 1 @mapoutputs | $REDUCER -l $metric > $dir/redoutput.$im1";
- print LOGFILE "COMMAND:\n$cmd\n";
+ print STDERR "COMMAND:\n$cmd\n";
$result = system($cmd);
unless ($result == 0){
cleanup();
- print LOGFILE "ERROR: reducer command returned non-zero exit code $result\n";
+ print STDERR "ERROR: reducer command returned non-zero exit code $result\n";
die;
}
$cmd="sort -nk3 $DIR_FLAG '-t|' $dir/redoutput.$im1 | head -1";
my $best=`$cmd`; chomp $best;
- print LOGFILE "$best\n";
+ print STDERR "$best\n";
my ($oa, $x, $xscore) = split /\|/, $best;
$score = $xscore;
- print LOGFILE "PROJECTED SCORE: $score\n";
+ print STDERR "PROJECTED SCORE: $score\n";
if (abs($x) < $epsilon) {
- print LOGFILE "\nOPTIMIZER: no score improvement: abs($x) < $epsilon\n";
+ print STDERR "\nOPTIMIZER: no score improvement: abs($x) < $epsilon\n";
last;
}
my $psd = $score - $last_score;
$last_score = $score;
if (abs($psd) < $epsilon) {
- print LOGFILE "\nOPTIMIZER: no score improvement: abs($psd) < $epsilon\n";
+ print STDERR "\nOPTIMIZER: no score improvement: abs($psd) < $epsilon\n";
last;
}
my ($origin, $axis) = split /\s+/, $oa;
@@ -401,15 +398,15 @@ while (1){
$lastWeightsFile = "$dir/weights.$iteration";
`cp $inweights $lastWeightsFile`;
if ($icc < 2) {
- print LOGFILE "\nREACHED STOPPING CRITERION: score change too little\n";
+ print STDERR "\nREACHED STOPPING CRITERION: score change too little\n";
last;
}
$lastPScore = $score;
$iteration++;
- print LOGFILE "\n==========\n";
+ print STDERR "\n==========\n";
}
-print LOGFILE "\nFINAL WEIGHTS: $dir/$lastWeightsFile\n(Use -w <this file> with hiero)\n\n";
+print STDERR "\nFINAL WEIGHTS: $dir/$lastWeightsFile\n(Use -w <this file> with hiero)\n\n";
sub normalize_weights {
my ($rfn, $rpts, $feat) = @_;
@@ -425,7 +422,7 @@ sub normalize_weights {
for (my $i=0; $i < scalar @feat_names; $i++) {
$pts[$i] /= $z;
}
- print LOGFILE " NORM WEIGHTS: @pts\n";
+ print STDERR " NORM WEIGHTS: @pts\n";
return @pts;
}
generated by cgit v1.2.3 (git 2.39.1) at 2024-11-14 11:55:58 +0000