1 files changed, 0 insertions, 136 deletions
diff --git a/src/sampler.h b/src/sampler.h
deleted file mode 100644
index e5840f41..00000000
--- a/src/sampler.h
+++ /dev/null
@@ -1,136 +0,0 @@
-#ifndef SAMPLER_H_
-#define SAMPLER_H_
-
-#include <algorithm>
-#include <functional>
-#include <numeric>
-#include <iostream>
-#include <fstream>
-#include <vector>
-
-#include <boost/random/mersenne_twister.hpp>
-#include <boost/random/uniform_real.hpp>
-#include <boost/random/variate_generator.hpp>
-#include <boost/random/normal_distribution.hpp>
-#include <boost/random/poisson_distribution.hpp>
-
-#include "prob.h"
-
-struct SampleSet;
-
-template <typename RNG>
-struct RandomNumberGenerator {
-  static uint32_t GetTrulyRandomSeed() {
-    uint32_t seed;
-    std::ifstream r("/dev/urandom");
-    if (r) {
-      r.read((char*)&seed,sizeof(uint32_t));
-    }
-    if (r.fail() || !r) {
-      std::cerr << "Warning: could not read from /dev/urandom. Seeding from clock" << std::endl;
-      seed = time(NULL);
-    }
-    std::cerr << "Seeding random number sequence to " << seed << std::endl;
-    return seed;
-  }
-
-  RandomNumberGenerator() : m_dist(0,1), m_generator(), m_random(m_generator,m_dist) {
-    uint32_t seed = GetTrulyRandomSeed();
-    m_generator.seed(seed);
-  }
-  explicit RandomNumberGenerator(uint32_t seed) : m_dist(0,1), m_generator(), m_random(m_generator,m_dist) {
-    if (!seed) seed = GetTrulyRandomSeed();
-    m_generator.seed(seed);
-  }
-
-  size_t SelectSample(const prob_t& a, const prob_t& b, double T = 1.0) {
-    if (T == 1.0) {
-      if (this->next() > (a / (a + b))) return 1; else return 0;
-    } else {
-      assert(!"not implemented");
-    }
-  }
-
-  // T is the annealing temperature, if desired
-  size_t SelectSample(const SampleSet& ss, double T = 1.0);
-
-  // draw a value from U(0,1)
-  double next() {return m_random();}
-
-  // draw a value from N(mean,var)
-  double NextNormal(double mean, double var) {
-    return boost::normal_distribution<double>(mean, var)(m_random);
-  }
-
-  // draw a value from a Poisson distribution
-  // lambda must be greater than 0
-  int NextPoisson(int lambda) {
-    return boost::poisson_distribution<int>(lambda)(m_random);
-  }
-
-  bool AcceptMetropolisHastings(const prob_t& p_cur,
-                                const prob_t& p_prev,
-                                const prob_t& q_cur,
-                                const prob_t& q_prev) {
-    const prob_t a = (p_cur / p_prev) * (q_prev / q_cur);
-    if (log(a) >= 0.0) return true;
-    return (prob_t(this->next()) < a);
-  }
-
- private:
-  boost::uniform_real<> m_dist;
-  RNG m_generator;
-  boost::variate_generator<RNG&, boost::uniform_real<> > m_random;
-};
-
-typedef RandomNumberGenerator<boost::mt19937> MT19937;
-
-class SampleSet {
- public:
-  const prob_t& operator[](int i) const { return m_scores[i]; }
-  bool empty() const { return m_scores.empty(); }
-  void add(const prob_t& s) { m_scores.push_back(s); }
-  void clear() { m_scores.clear(); }
-  size_t size() const { return m_scores.size(); }
-  std::vector<prob_t> m_scores;
-};
-
-template <typename RNG>
-size_t RandomNumberGenerator<RNG>::SelectSample(const SampleSet& ss, double T) {
-  assert(T > 0.0);
-  assert(ss.m_scores.size() > 0);
-  if (ss.m_scores.size() == 1) return 0;
-  const prob_t annealing_factor(1.0 / T);
-  const bool anneal = (annealing_factor != prob_t::One());
-  prob_t sum = prob_t::Zero();
-  if (anneal) {
-    for (int i = 0; i < ss.m_scores.size(); ++i)
-      sum += ss.m_scores[i].pow(annealing_factor);  // p^(1/T)
-  } else {
-    sum = std::accumulate(ss.m_scores.begin(), ss.m_scores.end(), prob_t::Zero());
-  }
-  //for (size_t i = 0; i < ss.m_scores.size(); ++i) std::cerr << ss.m_scores[i] << ",";
-  //std::cerr << std::endl;
- 
-  prob_t random(this->next());    // random number between 0 and 1
-  random *= sum;                  // scale with normalization factor
-  //std::cerr << "Random number " << random << std::endl;
-
-  //now figure out which sample
-  size_t position = 1;
-  sum = ss.m_scores[0];
-  if (anneal) {
-    sum.poweq(annealing_factor);
-    for (; position < ss.m_scores.size() && sum < random; ++position) 
-      sum += ss.m_scores[position].pow(annealing_factor);
-  } else {
-    for (; position < ss.m_scores.size() && sum < random; ++position) 
-      sum += ss.m_scores[position];
-  }
-  //std::cout << "random: " << random <<  " sample: " << position << std::endl;
-  //std::cerr << "Sample: " << position-1 << std::endl;
-  //exit(1);
-  return position-1;
-}
-
-#endif