diff options
Diffstat (limited to 'realtime/rt/aligner.py')
| -rw-r--r-- | realtime/rt/aligner.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/realtime/rt/aligner.py b/realtime/rt/aligner.py index def3fcb5..bcc1ef87 100644 --- a/realtime/rt/aligner.py +++ b/realtime/rt/aligner.py @@ -6,6 +6,8 @@ import threading import util +logger = logging.getLogger('rt.aligner') + class ForceAligner: def __init__(self, fwd_params, fwd_err, rev_params, rev_err): @@ -21,13 +23,13 @@ class ForceAligner: rev_cmd = [fast_align, '-i', '-', '-d', '-T', rev_T, '-m', rev_m, '-f', rev_params, '-r'] tools_cmd = [atools, '-i', '-', '-j', '-', '-c', 'grow-diag-final-and'] - logging.info('Executing: {}'.format(' '.join(fwd_cmd))) + logger.info('Executing: {}'.format(' '.join(fwd_cmd))) self.fwd_align = util.popen_io(fwd_cmd) - logging.info('Executing: {}'.format(' '.join(rev_cmd))) + logger.info('Executing: {}'.format(' '.join(rev_cmd))) self.rev_align = util.popen_io(rev_cmd) - logging.info('Executing: {}'.format(' '.join(tools_cmd))) + logger.info('Executing: {}'.format(' '.join(tools_cmd))) self.tools = util.popen_io(tools_cmd) # Used to guarantee thread safety |