few small fixes of alignment tools, add new orthographic similarity feature for word aligner, final naming of directories, libraries in cdec

1 files changed, 0 insertions, 726 deletions

diff --git a/src/earley_composer.cc b/src/earley_composer.cc
deleted file mode 100644
index a59686e0..00000000
--- a/src/earley_composer.cc
+++ /dev/null
@@ -1,726 +0,0 @@
-#include "earley_composer.h"
-
-#include <iostream>
-#include <fstream>
-#include <map>
-#include <queue>
-#include <tr1/unordered_set>
-
-#include <boost/shared_ptr.hpp>
-#include <boost/program_options.hpp>
-#include <boost/program_options/variables_map.hpp>
-#include <boost/lexical_cast.hpp>
-
-#include "phrasetable_fst.h"
-#include "sparse_vector.h"
-#include "tdict.h"
-#include "hg.h"
-
-using boost::shared_ptr;
-namespace po = boost::program_options;
-using namespace std;
-using namespace std::tr1;
-
-// Define the following macro if you want to see lots of debugging output
-// when you run the chart parser
-#undef DEBUG_CHART_PARSER
-
-// A few constants used by the chart parser ///////////////
-static const int kMAX_NODES = 2000000;
-static const string kPHRASE_STRING = "X";
-static bool constants_need_init = true;
-static WordID kUNIQUE_START;
-static WordID kPHRASE;
-static TRulePtr kX1X2;
-static TRulePtr kX1;
-static WordID kEPS;
-static TRulePtr kEPSRule;
-
-static void InitializeConstants() {
-  if (constants_need_init) {
-    kPHRASE = TD::Convert(kPHRASE_STRING) * -1;
-    kUNIQUE_START = TD::Convert("S") * -1;
-    kX1X2.reset(new TRule("[X] ||| [X,1] [X,2] ||| [X,1] [X,2]"));
-    kX1.reset(new TRule("[X] ||| [X,1] ||| [X,1]"));
-    kEPSRule.reset(new TRule("[X] ||| <eps> ||| <eps>"));
-    kEPS = TD::Convert("<eps>");
-    constants_need_init = false;
-  }
-}
-////////////////////////////////////////////////////////////
-
-class EGrammarNode {
-  friend bool EarleyComposer::Compose(const Hypergraph& src_forest, Hypergraph* trg_forest);
-  friend void AddGrammarRule(const string& r, map<WordID, EGrammarNode>* g);
- public:
-#ifdef DEBUG_CHART_PARSER
-  string hint;
-#endif
-  EGrammarNode() : is_some_rule_complete(false), is_root(false) {}
-  const map<WordID, EGrammarNode>& GetTerminals() const { return tptr; }
-  const map<WordID, EGrammarNode>& GetNonTerminals() const { return ntptr; }
-  bool HasNonTerminals() const { return (!ntptr.empty()); }
-  bool HasTerminals() const { return (!tptr.empty()); }
-  bool RuleCompletes() const {
-    return (is_some_rule_complete || (ntptr.empty() && tptr.empty()));
-  }
-  bool GrammarContinues() const {
-    return !(ntptr.empty() && tptr.empty());
-  }
-  bool IsRoot() const {
-    return is_root;
-  }
-  // these are the features associated with the rule from the start
-  // node up to this point.  If you use these features, you must
-  // not Extend() this rule.
-  const SparseVector<double>& GetCFGProductionFeatures() const {
-    return input_features;
-  }
-
-  const EGrammarNode* Extend(const WordID& t) const {
-    if (t < 0) {
-      map<WordID, EGrammarNode>::const_iterator it = ntptr.find(t);
-      if (it == ntptr.end()) return NULL;
-      return &it->second;
-    } else {
-      map<WordID, EGrammarNode>::const_iterator it = tptr.find(t);
-      if (it == tptr.end()) return NULL;
-      return &it->second;
-    }
-  }
-
- private:
-  map<WordID, EGrammarNode> tptr;
-  map<WordID, EGrammarNode> ntptr;
-  SparseVector<double> input_features;
-  bool is_some_rule_complete;
-  bool is_root;
-};
-typedef map<WordID, EGrammarNode> EGrammar;    // indexed by the rule LHS
-
-// edges are immutable once created
-struct Edge {
-#ifdef DEBUG_CHART_PARSER
-  static int id_count;
-  const int id;
-#endif
-  const WordID cat;                   // lhs side of rule proved/being proved
-  const EGrammarNode* const dot;      // dot position
-  const FSTNode* const q;             // start of span
-  const FSTNode* const r;             // end of span
-  const Edge* const active_parent;    // back pointer, NULL for PREDICT items
-  const Edge* const passive_parent;   // back pointer, NULL for SCAN and PREDICT items
-  const TargetPhraseSet* const tps;   // translations
-  shared_ptr<SparseVector<double> > features; // features from CFG rule
-
-  bool IsPassive() const {
-    // when a rule is completed, this value will be set
-    return static_cast<bool>(features);
-  }
-  bool IsActive() const { return !IsPassive(); }
-  bool IsInitial() const {
-    return !(active_parent || passive_parent);
-  }
-  bool IsCreatedByScan() const {
-    return active_parent && !passive_parent && !dot->IsRoot();
-  }
-  bool IsCreatedByPredict() const {
-    return dot->IsRoot();
-  }
-  bool IsCreatedByComplete() const {
-    return active_parent && passive_parent;
-  }
-
-  // constructor for PREDICT
-  Edge(WordID c, const EGrammarNode* d, const FSTNode* q_and_r) :
-#ifdef DEBUG_CHART_PARSER
-    id(++id_count),
-#endif
-    cat(c), dot(d), q(q_and_r), r(q_and_r), active_parent(NULL), passive_parent(NULL), tps(NULL) {}
-  Edge(WordID c, const EGrammarNode* d, const FSTNode* q_and_r, const Edge* act_parent) :
-#ifdef DEBUG_CHART_PARSER
-    id(++id_count),
-#endif
-    cat(c), dot(d), q(q_and_r), r(q_and_r), active_parent(act_parent), passive_parent(NULL), tps(NULL) {}
-
-  // constructors for SCAN
-  Edge(WordID c, const EGrammarNode* d, const FSTNode* i, const FSTNode* j,
-       const Edge* act_par, const TargetPhraseSet* translations) :
-#ifdef DEBUG_CHART_PARSER
-    id(++id_count),
-#endif
-    cat(c), dot(d), q(i), r(j), active_parent(act_par), passive_parent(NULL), tps(translations) {}
-
-  Edge(WordID c, const EGrammarNode* d, const FSTNode* i, const FSTNode* j,
-       const Edge* act_par, const TargetPhraseSet* translations,
-       const SparseVector<double>& feats) :
-#ifdef DEBUG_CHART_PARSER
-    id(++id_count),
-#endif
-    cat(c), dot(d), q(i), r(j), active_parent(act_par), passive_parent(NULL), tps(translations),
-    features(new SparseVector<double>(feats)) {}
-
-  // constructors for COMPLETE
-  Edge(WordID c, const EGrammarNode* d, const FSTNode* i, const FSTNode* j,
-       const Edge* act_par, const Edge *pas_par) :
-#ifdef DEBUG_CHART_PARSER
-    id(++id_count),
-#endif
-    cat(c), dot(d), q(i), r(j), active_parent(act_par), passive_parent(pas_par), tps(NULL) {
-      assert(pas_par->IsPassive());
-      assert(act_par->IsActive());
-    }
-
-  Edge(WordID c, const EGrammarNode* d, const FSTNode* i, const FSTNode* j,
-       const Edge* act_par, const Edge *pas_par, const SparseVector<double>& feats) :
-#ifdef DEBUG_CHART_PARSER
-    id(++id_count),
-#endif
-    cat(c), dot(d), q(i), r(j), active_parent(act_par), passive_parent(pas_par), tps(NULL),
-    features(new SparseVector<double>(feats)) {
-      assert(pas_par->IsPassive());
-      assert(act_par->IsActive());
-    }
-
-  // constructor for COMPLETE query
-  Edge(const FSTNode* _r) :
-#ifdef DEBUG_CHART_PARSER
-    id(0),
-#endif
-    cat(0), dot(NULL), q(NULL),
-    r(_r), active_parent(NULL), passive_parent(NULL), tps(NULL) {}
-  // constructor for MERGE quere
-  Edge(const FSTNode* _q, int) :
-#ifdef DEBUG_CHART_PARSER
-    id(0),
-#endif
-    cat(0), dot(NULL), q(_q),
-    r(NULL), active_parent(NULL), passive_parent(NULL), tps(NULL) {}
-};
-#ifdef DEBUG_CHART_PARSER
-int Edge::id_count = 0;
-#endif
-
-ostream& operator<<(ostream& os, const Edge& e) {
-  string type = "PREDICT";
-  if (e.IsCreatedByScan())
-    type = "SCAN";
-  else if (e.IsCreatedByComplete())
-    type = "COMPLETE"; 
-  os << "["
-#ifdef DEBUG_CHART_PARSER
-     << '(' << e.id << ") "
-#else
-     << '(' << &e << ") "
-#endif
-     << "q=" << e.q << ", r=" << e.r 
-     << ", cat="<< TD::Convert(e.cat*-1) << ", dot=" 
-     << e.dot
-#ifdef DEBUG_CHART_PARSER
-     << e.dot->hint
-#endif
-     << (e.IsActive() ? ", Active" : ", Passive")
-     << ", " << type;
-#ifdef DEBUG_CHART_PARSER
-  if (e.active_parent) { os << ", act.parent=(" << e.active_parent->id << ')'; }
-  if (e.passive_parent) { os << ", psv.parent=(" << e.passive_parent->id << ')'; }
-#endif
-  if (e.tps) { os << ", tps=" << e.tps; }
-  return os << ']';
-}
-
-struct Traversal {
-  const Edge* const edge;      // result from the active / passive combination
-  const Edge* const active;
-  const Edge* const passive;
-  Traversal(const Edge* me, const Edge* a, const Edge* p) : edge(me), active(a), passive(p) {}
-};
-
-struct UniqueTraversalHash {
-  size_t operator()(const Traversal* t) const {
-    size_t x = 5381;
-    x = ((x << 5) + x) ^ reinterpret_cast<size_t>(t->active);
-    x = ((x << 5) + x) ^ reinterpret_cast<size_t>(t->passive);
-    x = ((x << 5) + x) ^ t->edge->IsActive();
-    return x;
-  }
-};
-
-struct UniqueTraversalEquals {
-  size_t operator()(const Traversal* a, const Traversal* b) const {
-    return (a->passive == b->passive && a->active == b->active && a->edge->IsActive() == b->edge->IsActive());
-  }
-};
-
-struct UniqueEdgeHash {
-  size_t operator()(const Edge* e) const {
-    size_t x = 5381;
-    if (e->IsActive()) {
-      x = ((x << 5) + x) ^ reinterpret_cast<size_t>(e->dot);
-      x = ((x << 5) + x) ^ reinterpret_cast<size_t>(e->q);
-      x = ((x << 5) + x) ^ reinterpret_cast<size_t>(e->r);
-      x = ((x << 5) + x) ^ static_cast<size_t>(e->cat);
-      x += 13;
-    } else {  // with passive edges, we don't care about the dot
-      x = ((x << 5) + x) ^ reinterpret_cast<size_t>(e->q);
-      x = ((x << 5) + x) ^ reinterpret_cast<size_t>(e->r);
-      x = ((x << 5) + x) ^ static_cast<size_t>(e->cat);
-    }
-    return x;
-  }
-};
-
-struct UniqueEdgeEquals {
-  bool operator()(const Edge* a, const Edge* b) const {
-    if (a->IsActive() != b->IsActive()) return false;
-    if (a->IsActive()) {
-      return (a->cat == b->cat) && (a->dot == b->dot) && (a->q == b->q) && (a->r == b->r);
-    } else {
-      return (a->cat == b->cat) && (a->q == b->q) && (a->r == b->r);
-    }
-  }
-};
-
-struct REdgeHash {
-  size_t operator()(const Edge* e) const {
-    size_t x = 5381;
-    x = ((x << 5) + x) ^ reinterpret_cast<size_t>(e->r);
-    return x;
-  }
-};
-
-struct REdgeEquals {
-  bool operator()(const Edge* a, const Edge* b) const {
-    return (a->r == b->r);
-  }
-};
-
-struct QEdgeHash {
-  size_t operator()(const Edge* e) const {
-    size_t x = 5381;
-    x = ((x << 5) + x) ^ reinterpret_cast<size_t>(e->q);
-    return x;
-  }
-};
-
-struct QEdgeEquals {
-  bool operator()(const Edge* a, const Edge* b) const {
-    return (a->q == b->q);
-  }
-};
-
-struct EdgeQueue {
-  queue<const Edge*> q;
-  EdgeQueue() {}
-  void clear() { while(!q.empty()) q.pop(); }
-  bool HasWork() const { return !q.empty(); }
-  const Edge* Next() { const Edge* res = q.front(); q.pop(); return res; }
-  void AddEdge(const Edge* s) { q.push(s); }
-};
-
-class EarleyComposerImpl {
- public:
-  EarleyComposerImpl(WordID start_cat, const FSTNode& q_0) : start_cat_(start_cat), q_0_(&q_0) {}
-
-  // returns false if the intersection is empty
-  bool Compose(const EGrammar& g, Hypergraph* forest) {
-    goal_node = NULL;
-    EGrammar::const_iterator sit = g.find(start_cat_);
-    forest->ReserveNodes(kMAX_NODES);
-    assert(sit != g.end());
-    Edge* init = new Edge(start_cat_, &sit->second, q_0_);
-    assert(IncorporateNewEdge(init));
-    while (exp_agenda.HasWork() || agenda.HasWork()) {
-      while(exp_agenda.HasWork()) {
-        const Edge* edge = exp_agenda.Next();
-        FinishEdge(edge, forest);
-      }
-      if (agenda.HasWork()) {
-        const Edge* edge = agenda.Next();
-#ifdef DEBUG_CHART_PARSER
-        cerr << "processing (" << edge->id << ')' << endl;
-#endif
-        if (edge->IsActive()) {
-          if (edge->dot->HasTerminals())
-            DoScan(edge);
-          if (edge->dot->HasNonTerminals()) {
-            DoMergeWithPassives(edge);
-            DoPredict(edge, g);
-          }
-        } else {
-          DoComplete(edge);
-        }
-      }
-    }
-    if (goal_node) {
-      forest->PruneUnreachable(goal_node->id_);
-      forest->EpsilonRemove(kEPS);
-    }
-    FreeAll();
-    return goal_node;
-  }
-
-  void FreeAll() {
-    for (int i = 0; i < free_list_.size(); ++i)
-      delete free_list_[i];
-    free_list_.clear();
-    for (int i = 0; i < traversal_free_list_.size(); ++i)
-      delete traversal_free_list_[i];
-    traversal_free_list_.clear();
-    all_traversals.clear();
-    exp_agenda.clear();
-    agenda.clear();
-    tps2node.clear();
-    edge2node.clear();
-    all_edges.clear();
-    passive_edges.clear();
-    active_edges.clear();
-  }
-
-  ~EarleyComposerImpl() {
-    FreeAll();
-  }
-
-  // returns the total number of edges created during composition
-  int EdgesCreated() const {
-    return free_list_.size();
-  }
-
- private:
-  void DoScan(const Edge* edge) {
-    // here, we assume that the FST will potentially have many more outgoing
-    // edges than the grammar, which will be just a couple.  If you want to
-    // efficiently handle the case where both are relatively large, this code
-    // will need to change how the intersection is done.  The best general
-    // solution would probably be the Baeza-Yates double binary search.
-
-    const EGrammarNode* dot = edge->dot;
-    const FSTNode* r = edge->r;
-    const map<WordID, EGrammarNode>& terms = dot->GetTerminals();
-    for (map<WordID, EGrammarNode>::const_iterator git = terms.begin();
-         git != terms.end(); ++git) {
-      const FSTNode* next_r = r->Extend(git->first);
-      if (!next_r) continue;
-      const EGrammarNode* next_dot = &git->second;
-      const bool grammar_continues = next_dot->GrammarContinues();
-      const bool rule_completes    = next_dot->RuleCompletes();
-      assert(grammar_continues || rule_completes);
-      const SparseVector<double>& input_features = next_dot->GetCFGProductionFeatures();
-      // create up to 4 new edges!
-      if (next_r->HasOutgoingNonEpsilonEdges()) {     // are there further symbols in the FST?
-        const TargetPhraseSet* translations = NULL;
-        if (rule_completes)
-          IncorporateNewEdge(new Edge(edge->cat, next_dot, edge->q, next_r, edge, translations, input_features));
-        if (grammar_continues)
-          IncorporateNewEdge(new Edge(edge->cat, next_dot, edge->q, next_r, edge, translations));
-      }
-      if (next_r->HasData()) {   // indicates a loop back to q_0 in the FST
-        const TargetPhraseSet* translations = next_r->GetTranslations();
-        if (rule_completes)
-          IncorporateNewEdge(new Edge(edge->cat, next_dot, edge->q, q_0_, edge, translations, input_features));
-        if (grammar_continues)
-          IncorporateNewEdge(new Edge(edge->cat, next_dot, edge->q, q_0_, edge, translations));
-      }
-    }
-  }
-
-  void DoPredict(const Edge* edge, const EGrammar& g) {
-    const EGrammarNode* dot = edge->dot;
-    const map<WordID, EGrammarNode>& non_terms = dot->GetNonTerminals();
-    for (map<WordID, EGrammarNode>::const_iterator git = non_terms.begin();
-         git != non_terms.end(); ++git) {
-      const WordID nt_to_predict = git->first;
-      //cerr << edge->id << " -- " << TD::Convert(nt_to_predict*-1) << endl;
-      EGrammar::const_iterator egi = g.find(nt_to_predict);
-      if (egi == g.end()) {
-        cerr << "[ERROR] Can't find any grammar rules with a LHS of type "
-             << TD::Convert(-1*nt_to_predict) << '!' << endl;
-        continue;
-      }
-      assert(edge->IsActive());
-      const EGrammarNode* new_dot = &egi->second;
-      Edge* new_edge = new Edge(nt_to_predict, new_dot, edge->r, edge);
-      IncorporateNewEdge(new_edge);
-    }
-  }
-
-  void DoComplete(const Edge* passive) {
-#ifdef DEBUG_CHART_PARSER
-    cerr << "  complete: " << *passive << endl;
-#endif
-    const WordID completed_nt = passive->cat;
-    const FSTNode* q = passive->q;
-    const FSTNode* next_r = passive->r;
-    const Edge query(q);
-    const pair<unordered_multiset<const Edge*, REdgeHash, REdgeEquals>::iterator,
-         unordered_multiset<const Edge*, REdgeHash, REdgeEquals>::iterator > p =
-      active_edges.equal_range(&query);
-    for (unordered_multiset<const Edge*, REdgeHash, REdgeEquals>::iterator it = p.first;
-         it != p.second; ++it) {
-      const Edge* active = *it;
-#ifdef DEBUG_CHART_PARSER
-      cerr << "    pos: " << *active << endl;
-#endif
-      const EGrammarNode* next_dot = active->dot->Extend(completed_nt);
-      if (!next_dot) continue;
-      const SparseVector<double>& input_features = next_dot->GetCFGProductionFeatures();
-      // add up to 2 rules
-      if (next_dot->RuleCompletes())
-        IncorporateNewEdge(new Edge(active->cat, next_dot, active->q, next_r, active, passive, input_features));
-      if (next_dot->GrammarContinues())
-        IncorporateNewEdge(new Edge(active->cat, next_dot, active->q, next_r, active, passive));
-    }
-  }
-
-  void DoMergeWithPassives(const Edge* active) {
-    // edge is active, has non-terminals, we need to find the passives that can extend it
-    assert(active->IsActive());
-    assert(active->dot->HasNonTerminals());
-#ifdef DEBUG_CHART_PARSER
-    cerr << "  merge active with passives: ACT=" << *active << endl;
-#endif
-    const Edge query(active->r, 1);
-    const pair<unordered_multiset<const Edge*, QEdgeHash, QEdgeEquals>::iterator,
-         unordered_multiset<const Edge*, QEdgeHash, QEdgeEquals>::iterator > p =
-      passive_edges.equal_range(&query);
-    for (unordered_multiset<const Edge*, QEdgeHash, QEdgeEquals>::iterator it = p.first;
-         it != p.second; ++it) {
-      const Edge* passive = *it;
-      const EGrammarNode* next_dot = active->dot->Extend(passive->cat);
-      if (!next_dot) continue;
-      const FSTNode* next_r = passive->r;
-      const SparseVector<double>& input_features = next_dot->GetCFGProductionFeatures();
-      if (next_dot->RuleCompletes())
-        IncorporateNewEdge(new Edge(active->cat, next_dot, active->q, next_r, active, passive, input_features));
-      if (next_dot->GrammarContinues())
-        IncorporateNewEdge(new Edge(active->cat, next_dot, active->q, next_r, active, passive));
-    }
-  }
-
-  // take ownership of edge memory, add to various indexes, etc
-  // returns true if this edge is new
-  bool IncorporateNewEdge(Edge* edge) {
-    free_list_.push_back(edge);
-    if (edge->passive_parent && edge->active_parent) {
-      Traversal* t = new Traversal(edge, edge->active_parent, edge->passive_parent);
-      traversal_free_list_.push_back(t);
-      if (all_traversals.find(t) != all_traversals.end()) {
-        return false;
-      } else {
-        all_traversals.insert(t);
-      }
-    }
-    exp_agenda.AddEdge(edge);
-    return true;
-  }
-
-  bool FinishEdge(const Edge* edge, Hypergraph* hg) {
-    bool is_new = false;
-    if (all_edges.find(edge) == all_edges.end()) {
-#ifdef DEBUG_CHART_PARSER
-      cerr << *edge << " is NEW\n";
-#endif
-      all_edges.insert(edge);
-      is_new = true;
-      if (edge->IsPassive()) passive_edges.insert(edge);
-      if (edge->IsActive()) active_edges.insert(edge);
-      agenda.AddEdge(edge);
-    } else {
-#ifdef DEBUG_CHART_PARSER
-      cerr << *edge << " is NOT NEW.\n";
-#endif
-    }
-    AddEdgeToTranslationForest(edge, hg);
-    return is_new;
-  }
-
-  // build the translation forest
-  void AddEdgeToTranslationForest(const Edge* edge, Hypergraph* hg) {
-    assert(hg->nodes_.size() < kMAX_NODES);
-    Hypergraph::Node* tps = NULL;
-    // first add any target language rules
-    if (edge->tps) {
-      Hypergraph::Node*& node = tps2node[(size_t)edge->tps];
-      if (!node) {
-        // cerr << "Creating phrases for " << edge->tps << endl;
-        const vector<TRulePtr>& rules = edge->tps->GetRules();
-        node = hg->AddNode(kPHRASE, "");
-        for (int i = 0; i < rules.size(); ++i) {
-          Hypergraph::Edge* hg_edge = hg->AddEdge(rules[i], Hypergraph::TailNodeVector());
-          hg_edge->feature_values_ += rules[i]->GetFeatureValues();
-          hg->ConnectEdgeToHeadNode(hg_edge, node);
-        }
-      }
-      tps = node;
-    }
-    Hypergraph::Node*& head_node = edge2node[edge];
-    if (!head_node)
-      head_node = hg->AddNode(kPHRASE, "");
-    if (edge->cat == start_cat_ && edge->q == q_0_ && edge->r == q_0_ && edge->IsPassive()) {
-      assert(goal_node == NULL || goal_node == head_node);
-      goal_node = head_node;
-    }
-    Hypergraph::TailNodeVector tail;
-    SparseVector<double> extra;
-    if (edge->IsCreatedByPredict()) {
-      // extra.set_value(FD::Convert("predict"), 1);
-    } else if (edge->IsCreatedByScan()) {
-      tail.push_back(edge2node[edge->active_parent]->id_);
-      if (tps) {
-        tail.push_back(tps->id_);
-      }
-      //extra.set_value(FD::Convert("scan"), 1);
-    } else if (edge->IsCreatedByComplete()) {
-      tail.push_back(edge2node[edge->active_parent]->id_);
-      tail.push_back(edge2node[edge->passive_parent]->id_);
-      //extra.set_value(FD::Convert("complete"), 1);
-    } else {
-      assert(!"unexpected edge type!");
-    }
-    //cerr << head_node->id_ << "<--" << *edge << endl;
-
-#ifdef DEBUG_CHART_PARSER
-      for (int i = 0; i < tail.size(); ++i)
-        if (tail[i] == head_node->id_) {
-          cerr << "ERROR: " << *edge << "\n   i=" << i << endl;
-          if (i == 1) { cerr << "\tP: " << *edge->passive_parent << endl; }
-          if (i == 0) { cerr << "\tA: " << *edge->active_parent << endl; }
-          assert(!"self-loop found!");
-        }
-#endif
-    Hypergraph::Edge* hg_edge = NULL; 
-    if (tail.size() == 0) {
-      hg_edge = hg->AddEdge(kEPSRule, tail);
-    } else if (tail.size() == 1) {
-      hg_edge = hg->AddEdge(kX1, tail);
-    } else if (tail.size() == 2) {
-      hg_edge = hg->AddEdge(kX1X2, tail);
-    }
-    if (edge->features)
-      hg_edge->feature_values_ += *edge->features;
-    hg_edge->feature_values_ += extra;
-    hg->ConnectEdgeToHeadNode(hg_edge, head_node);
-  }
-
-  Hypergraph::Node* goal_node;
-  EdgeQueue exp_agenda;
-  EdgeQueue agenda;
-  unordered_map<size_t, Hypergraph::Node*> tps2node;
-  unordered_map<const Edge*, Hypergraph::Node*, UniqueEdgeHash, UniqueEdgeEquals> edge2node;
-  unordered_set<const Traversal*, UniqueTraversalHash, UniqueTraversalEquals> all_traversals;
-  unordered_set<const Edge*, UniqueEdgeHash, UniqueEdgeEquals> all_edges;
-  unordered_multiset<const Edge*, QEdgeHash, QEdgeEquals> passive_edges;
-  unordered_multiset<const Edge*, REdgeHash, REdgeEquals> active_edges;
-  vector<Edge*> free_list_;
-  vector<Traversal*> traversal_free_list_;
-  const WordID start_cat_;
-  const FSTNode* const q_0_;
-};
-
-#ifdef DEBUG_CHART_PARSER
-static string TrimRule(const string& r) {
-  size_t start = r.find(" |||") + 5;
-  size_t end = r.rfind(" |||");
-  return r.substr(start, end - start);
-}
-#endif
-
-void AddGrammarRule(const string& r, EGrammar* g) {
-  const size_t pos = r.find(" ||| ");
-  if (pos == string::npos || r[0] != '[') {
-    cerr << "Bad rule: " << r << endl;
-    return;
-  }
-  const size_t rpos = r.rfind(" ||| ");
-  string feats;
-  string rs = r;
-  if (rpos != pos) {
-    feats = r.substr(rpos + 5);
-    rs = r.substr(0, rpos);
-  }
-  string rhs = rs.substr(pos + 5);
-  string trule = rs + " ||| " + rhs + " ||| " + feats;
-  TRule tr(trule);
-#ifdef DEBUG_CHART_PARSER
-  string hint_last_rule;
-#endif
-  EGrammarNode* cur = &(*g)[tr.GetLHS()];
-  cur->is_root = true;
-  for (int i = 0; i < tr.FLength(); ++i) {
-    WordID sym = tr.f()[i];
-#ifdef DEBUG_CHART_PARSER
-    hint_last_rule = TD::Convert(sym < 0 ? -sym : sym);
-    cur->hint += " <@@> (*" + hint_last_rule + ") " + TrimRule(tr.AsString());
-#endif
-    if (sym < 0)
-      cur = &cur->ntptr[sym];
-    else
-      cur = &cur->tptr[sym];
-  }
-#ifdef DEBUG_CHART_PARSER
-  cur->hint += " <@@> (" + hint_last_rule + "*) " + TrimRule(tr.AsString());
-#endif
-  cur->is_some_rule_complete = true;
-  cur->input_features = tr.GetFeatureValues();
-}
-
-EarleyComposer::~EarleyComposer() {
-  delete pimpl_;
-}
-
-EarleyComposer::EarleyComposer(const FSTNode* fst) {
-  InitializeConstants();
-  pimpl_ = new EarleyComposerImpl(kUNIQUE_START, *fst);
-}
-
-bool EarleyComposer::Compose(const Hypergraph& src_forest, Hypergraph* trg_forest) {
-  // first, convert the src forest into an EGrammar
-  EGrammar g;
-  const int nedges = src_forest.edges_.size();
-  const int nnodes = src_forest.nodes_.size();
-  vector<int> cats(nnodes);
-  bool assign_cats = false;
-  for (int i = 0; i < nnodes; ++i)
-    if (assign_cats) {
-      cats[i] = TD::Convert("CAT_" + boost::lexical_cast<string>(i)) * -1;
-    } else {
-      cats[i] = src_forest.nodes_[i].cat_;
-    }
-  // construct the grammar
-  for (int i = 0; i < nedges; ++i) {
-    const Hypergraph::Edge& edge = src_forest.edges_[i];
-    const vector<WordID>& src = edge.rule_->f();
-    EGrammarNode* cur = &g[cats[edge.head_node_]];
-    cur->is_root = true;
-    int ntc = 0;
-    for (int j = 0; j < src.size(); ++j) {
-      WordID sym = src[j];
-      if (sym <= 0) {
-        sym = cats[edge.tail_nodes_[ntc]];
-        ++ntc;
-        cur = &cur->ntptr[sym];
-      } else {
-        cur = &cur->tptr[sym];
-      }
-    }
-    cur->is_some_rule_complete = true;
-    cur->input_features = edge.feature_values_;
-  }
-  EGrammarNode& goal_rule = g[kUNIQUE_START];
-  assert((goal_rule.ntptr.size() == 1 && goal_rule.tptr.size() == 0) ||
-         (goal_rule.ntptr.size() == 0 && goal_rule.tptr.size() == 1));
-
-  return pimpl_->Compose(g, trg_forest);
-}
-
-bool EarleyComposer::Compose(istream* in, Hypergraph* trg_forest) {
-  EGrammar g;
-  while(*in) {
-    string line;
-    getline(*in, line);
-    if (line.empty()) continue;
-    AddGrammarRule(line, &g);
-  }
-
-  return pimpl_->Compose(g, trg_forest);
-}