remove old suffix array extractor (use the one in python/ instead)

1 files changed, 0 insertions, 148 deletions

diff --git a/sa-extract/compile_bin.py b/sa-extract/compile_bin.py
deleted file mode 100755
index 0196e552..00000000
--- a/sa-extract/compile_bin.py
+++ /dev/null
@@ -1,148 +0,0 @@
-#!/usr/bin/env python
-
-'''This program compiles/decompiles binary data objects used
-by the decoder'''
-
-import sys
-import cdat
-import calignment
-import csuf
-import clex
-import precomputation
-#import parse
-import monitor
-import optparse
-
-def main(argv=None):
-	'''Call this from the command-line to create a 
-	pre-computed binary data array for later use'''
-	if argv is None:
-		argv = sys.argv
-
-	parser = optparse.OptionParser(usage="Usage: %prog [-s|-d|-a|-p] <input file> <output file>"+
-								"\n\nNote: -d,-s,-a, and -p are mutually exclusive")
-	parser.add_option("-d", "--data-array", 
-					action="store_true", default=False,
-					dest="da", help="Compile file into data array (default)")
-	parser.add_option("-s", "--suffix-array", 
-					action="store_true", default=False,
-					dest="sa", help="Compile file into suffix array")
-	parser.add_option("-a", "--alignment", 
-					action="store_true", default=False,
-					dest="a", help="Compile file into alignment")
-	parser.add_option("-l", "--lexical", 
-					action="store_true", default=False,
-					dest="l", help="Compile file into lex file")
-	parser.add_option("-x", "--compute_lexical", action="store", nargs=2,
-					dest="lex_args", help="Compute lex file from data",
-					metavar="<f file> <e file>")
-	parser.add_option("-p", "--parse", 
-					action="store_true", default=False,
-					dest="p", help="Compile file into parse")
-	parser.add_option("-b", "--binary-infile", 
-					action="store_true", default=False,
-					dest="bin", help="Input file is binary (default: text)")
-	parser.add_option("-t", "--text-outfile", 
-					action="store_true", default=False,
-					dest="text", help="Output file is text (default: binary)")
-	parser.add_option("-e", "--enhanced-outfile", 
-					action="store_true", default=False,
-					dest="enhanced", help="Output file is enhanced text (default: binary)")
-	parser.add_option("-r", action="store", nargs=7,
-					dest="precomp_args", help="Precompute collocations (Hiero only)", 
-					metavar="max-len=<INT> max-nt=<INT> max-size=<INT> min-gap=<INT> rank1=<INT> rank2=<INT> sa=<FILE>")
-	(options, args) = parser.parse_args()
-
-	filetype_opts =  [options.da, options.sa, options.a, options.p]
-
-	if (len(filter(lambda x: x, filetype_opts))) > 1 or len(args) != 2:
-		parser.print_help()
-		sys.exit(1)
-
-	(infilename, outfilename) = args
-	if options.bin:
-		bin = " binary"
-	else:
-		bin = ""
-
-	start_time = monitor.cpu()
-	if options.precomp_args:
-		if options.bin:
-			obj = precomputation.Precomputation(infilename, from_binary=True)
-		else:
-			keys = set(["max-len", "max-nt", "max-size", "min-gap", "rank1", "rank2", "sa"])
-			precomp_opts = {} 
-			sys.stderr.write("Precomputing statistics for list %s\n" % infilename)
-			for pair in options.precomp_args:
-				(key, val) = pair.split("=")
-				if key in keys:
-					keys.remove(key)
-					if key != "sa":
-						val = int(val)
-					precomp_opts[key] = val
-				else:
-					sys.stderr.write("Unknown keyword arg %s for -r (must be one of: max-len, max-nt, max-size, min-gap, rank1, rank2)\n" % key)
-					return 1
-			sa = csuf.SuffixArray(precomp_opts["sa"], True)
-			obj = precomputation.Precomputation(infilename, sa, 
-				precompute_rank=precomp_opts["rank1"], 
-				precompute_secondary_rank=precomp_opts["rank2"], 
-				max_length=precomp_opts["max-len"], 
-				max_nonterminals=precomp_opts["max-nt"], 
-				train_max_initial_size=precomp_opts["max-size"], 
-				train_min_gap_size=precomp_opts["min-gap"])
-	elif options.sa:
-		sys.stderr.write("Reading %s as%s suffix array...\n" % (infilename, bin))
-		obj = csuf.SuffixArray(infilename, options.bin)
-	elif options.a:
-		sys.stderr.write("Reading %s as%s alignment array...\n" % (infilename, bin))
-		obj = calignment.Alignment(infilename, options.bin)
-	elif options.p:
-		sys.stderr.write("Reading %s as%s parse array...\n" % (infilename, bin))
-		obj = parse.ParseArray(infilename, options.bin)
-	elif options.l:
-		sys.stderr.write("Reading %s as%s lex array...\n" % (infilename, bin))
-		obj = clex.CLex(infilename, options.bin)
-	elif options.lex_args:
-		ffile = options.lex_args[0]
-		efile = options.lex_args[1]
-		sys.stderr.write("Computing lex array from:\n A=%s\n F=%s\n E=%s\n" % (infilename, ffile, efile))
-		fsarray = csuf.SuffixArray(ffile, True)
-		earray = cdat.DataArray(efile, True)
-		aarray = calignment.Alignment(infilename, True)
-		obj = clex.CLex(aarray, from_data=True, earray=earray, fsarray=fsarray)
-	else:
-		sys.stderr.write("Reading %s as%s data array...\n" % (infilename, bin))
-		obj = cdat.DataArray(infilename, options.bin)
-
-	sys.stderr.write("  Total time for read: %f\n" % (monitor.cpu() - start_time))
-	start_time = monitor.cpu()
-	if options.text:
-		sys.stderr.write("Writing text file %s...\n" % outfilename)
-		obj.write_text(outfilename)
-	elif options.enhanced:
-		sys.stderr.write("Writing enhanced text file %s...\n" % outfilename)
-		obj.write_enhanced(outfilename)
-	else:
-		sys.stderr.write("Writing binary file %s...\n" % outfilename)
-		obj.write_binary(outfilename)
-	sys.stderr.write("Finished.\n")
-	sys.stderr.write("  Total time for write: %f\n" % (monitor.cpu() - start_time))
-
-	mem_use = float(monitor.memory())
-	metric = "B"
-	if mem_use / 1000 > 1:
-		mem_use /= 1000
-		metric = "KB"
-	if mem_use / 1000 > 1:
-		mem_use /= 1000
-		metric = "MB"
-	if mem_use / 1000 > 1:
-		mem_use /= 1000
-		metric = "GB"
-	sys.stderr.write("  Memory usage: %.1f%s\n" % (mem_use, metric))
-
-
-
-if __name__ == "__main__":
-	sys.exit(main(sys.argv))