Merge branch 'master' of github.com:redpony/cdec

5 files changed, 2591 insertions, 1393 deletions

diff --git a/python/pkg/cdec/sa/compile.py b/python/pkg/cdec/sa/compile.py
index 30e605a6..2a89243b 100644
--- a/python/pkg/cdec/sa/compile.py
+++ b/python/pkg/cdec/sa/compile.py
@@ -37,16 +37,22 @@ def main():
                         help='Number of pre-computed super-frequent patterns)')
     parser.add_argument('-c', '--config', default='/dev/stdout',
                         help='Output configuration')
-    parser.add_argument('-o', '--output', required=True,
-                        help='Output path')
-    parser.add_argument('-f', '--source', required=True,
+    parser.add_argument('-f', '--source',
                         help='Source language corpus')
-    parser.add_argument('-e', '--target', required=True,
+    parser.add_argument('-e', '--target',
                         help='Target language corpus')
+    parser.add_argument('-b', '--bitext',
+                        help='Parallel text (source ||| target)')
     parser.add_argument('-a', '--alignment', required=True,
                         help='Bitext word alignment')
+    parser.add_argument('-o', '--output', required=True,
+                        help='Output path')
     args = parser.parse_args()
 
+    if not ((args.source and args.target) or args.bitext):
+        parser.error('a parallel corpus is required\n'
+        '\tuse -f (source) with -e (target) or -b (bitext)')
+
     param_names = ("max_len", "max_nt", "max_size", "min_gap", "rank1", "rank2")
     params = (args.maxlen, args.maxnt, args.maxsize, args.mingap, args.rank1, args.rank2)
 
@@ -61,11 +67,17 @@ def main():
     lex_bin = os.path.join(args.output, 'lex.bin')
 
     logger.info('Compiling source suffix array')
-    f_sa = cdec.sa.SuffixArray(from_text=args.source)
+    if args.bitext:
+        f_sa = cdec.sa.SuffixArray(from_text=args.bitext, side='source')
+    else:
+        f_sa = cdec.sa.SuffixArray(from_text=args.source)
     f_sa.write_binary(f_sa_bin)
 
     logger.info('Compiling target data array')
-    e = cdec.sa.DataArray(from_text=args.target)
+    if args.bitext:
+        e = cdec.sa.DataArray(from_text=args.bitext, side='target')
+    else:
+        e = cdec.sa.DataArray(from_text=args.target)
     e.write_binary(e_bin)
 
     logger.info('Precomputing frequent phrases')
diff --git a/python/src/cdec.sa._sa.pxd b/python/src/cdec.sa._sa.pxd
new file mode 120000
index 00000000..3613f643
--- /dev/null
+++ b/python/src/cdec.sa._sa.pxd
@@ -0,0 +1 @@
+sa/_sa.pxd
\ No newline at end of file
diff --git a/python/src/sa/_sa.c b/python/src/sa/_sa.c
index b7f3627a..0f9b0d22 100644
--- a/python/src/sa/_sa.c
+++ b/python/src/sa/_sa.c
@@ -1,4 +1,4 @@
-/* Generated by Cython 0.17.beta1 on Fri Jul 27 23:31:04 2012 */
+/* Generated by Cython 0.17.beta1 on Sat Jul 28 17:07:03 2012 */
 
 #define PY_SSIZE_T_CLEAN
 #include "Python.h"
@@ -383,6 +383,7 @@ static const char *__pyx_f[] = {
 
 /*--- Type declarations ---*/
 struct __pyx_obj_3_sa_HieroCachingRuleFactory;
+struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats;
 struct __pyx_obj_3_sa_IntList;
 struct __pyx_obj_3_sa_VEBIterator;
 struct __pyx_obj_3_sa_BiLex;
@@ -390,23 +391,24 @@ struct __pyx_obj_3_sa_VEB;
 struct __pyx_obj_3_sa_LCP;
 struct __pyx_obj_3_sa_DataArray;
 struct __pyx_obj_3_sa_BitSetIterator;
+struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext;
 struct __pyx_obj_3_sa_Precomputation;
 struct __pyx_obj_3_sa_SuffixArray;
+struct __pyx_obj_3_sa___pyx_scope_struct_4_input;
 struct __pyx_obj_3_sa_Alphabet;
 struct __pyx_obj_3_sa_Rule;
 struct __pyx_obj_3_sa_PhraseLocation;
-struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats;
-struct __pyx_obj_3_sa___pyx_scope_struct_2_input;
+struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__;
 struct __pyx_obj_3_sa_Alignment;
 struct __pyx_obj_3_sa_BitSet;
 struct __pyx_obj_3_sa_Sampler;
 struct __pyx_obj_3_sa_StringMap;
-struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__;
 struct __pyx_obj_3_sa_TrieNode;
 struct __pyx_obj_3_sa_ExtendedTrieNode;
 struct __pyx_obj_3_sa_TrieMap;
 struct __pyx_obj_3_sa_Phrase;
 struct __pyx_obj_3_sa_TrieTable;
+struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr;
 struct __pyx_obj_3_sa_FloatList;
 struct __pyx_t_3_sa__node;
 struct __pyx_t_3_sa__BitSet;
@@ -563,6 +565,37 @@ struct __pyx_obj_3_sa_HieroCachingRuleFactory {
 };
 
 
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/lcp.pxi":36
+ *         logger.info("LCP array completed")
+ * 
+ *     def compute_stats(self, int max_n):             # <<<<<<<<<<<<<<
+ *         """Note: the output of this function is not exact.  In
+ *         particular, the frequency associated with each word is
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats {
+  PyObject_HEAD
+  int __pyx_v_N;
+  int __pyx_v_freq;
+  int __pyx_v_h;
+  int __pyx_v_i;
+  int __pyx_v_ii;
+  int __pyx_v_iii;
+  int __pyx_v_j;
+  int __pyx_v_k;
+  int __pyx_v_max_n;
+  int __pyx_v_n;
+  PyObject *__pyx_v_ngram;
+  struct __pyx_obj_3_sa_IntList *__pyx_v_ngram_start;
+  PyObject *__pyx_v_ngram_starts;
+  int __pyx_v_rs;
+  struct __pyx_obj_3_sa_IntList *__pyx_v_run_start;
+  struct __pyx_obj_3_sa_LCP *__pyx_v_self;
+  int __pyx_v_valid;
+  struct __pyx_obj_3_sa_VEB *__pyx_v_veb;
+  int __pyx_t_0;
+};
+
+
 /* "/Users/vchahun/Sandbox/cdec/python/src/sa/int_list.pxi":9
  * from libc.string cimport memset, memcpy
  * 
@@ -676,6 +709,20 @@ struct __pyx_obj_3_sa_BitSetIterator {
 };
 
 
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":71
+ *             self.read_text_data(fp)
+ * 
+ *     def read_bitext(self, char* filename, int side):             # <<<<<<<<<<<<<<
+ *         with gzip_or_text(filename) as fp:
+ *             data = (line.split(' ||| ')[side] for line in fp)
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext {
+  PyObject_HEAD
+  PyObject *__pyx_v_fp;
+  int __pyx_v_side;
+};
+
+
 /* "/Users/vchahun/Sandbox/cdec/python/src/sa/precomputation.pxi":188
  * 
  * 
@@ -713,84 +760,6 @@ struct __pyx_obj_3_sa_SuffixArray {
 };
 
 
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi":7
- * cdef int INDEX_MASK = (1<<INDEX_SHIFT)-1
- * 
- * cdef class Alphabet:             # <<<<<<<<<<<<<<
- *     cdef readonly StringMap terminals, nonterminals
- *     cdef int first_nonterminal, last_nonterminal
- */
-struct __pyx_obj_3_sa_Alphabet {
-  PyObject_HEAD
-  struct __pyx_vtabstruct_3_sa_Alphabet *__pyx_vtab;
-  struct __pyx_obj_3_sa_StringMap *terminals;
-  struct __pyx_obj_3_sa_StringMap *nonterminals;
-  int first_nonterminal;
-  int last_nonterminal;
-  PyObject *id2sym;
-};
-
-struct __pyx_obj_3_sa_Rule {
-  PyObject_HEAD
-  int lhs;
-  struct __pyx_obj_3_sa_Phrase *f;
-  struct __pyx_obj_3_sa_Phrase *e;
-  float *cscores;
-  int n_scores;
-  PyObject *word_alignments;
-};
-
-
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":56
- * # in the suffix array; if discontiguous, it is the set of
- * # actual locations (packed into an array)
- * cdef class PhraseLocation:             # <<<<<<<<<<<<<<
- *     cdef int sa_low
- *     cdef int sa_high
- */
-struct __pyx_obj_3_sa_PhraseLocation {
-  PyObject_HEAD
-  struct __pyx_vtabstruct_3_sa_PhraseLocation *__pyx_vtab;
-  int sa_low;
-  int sa_high;
-  int arr_low;
-  int arr_high;
-  struct __pyx_obj_3_sa_IntList *arr;
-  int num_subpatterns;
-};
-
-
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/lcp.pxi":36
- *         logger.info("LCP array completed")
- * 
- *     def compute_stats(self, int max_n):             # <<<<<<<<<<<<<<
- *         """Note: the output of this function is not exact.  In
- *         particular, the frequency associated with each word is
- */
-struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats {
-  PyObject_HEAD
-  int __pyx_v_N;
-  int __pyx_v_freq;
-  int __pyx_v_h;
-  int __pyx_v_i;
-  int __pyx_v_ii;
-  int __pyx_v_iii;
-  int __pyx_v_j;
-  int __pyx_v_k;
-  int __pyx_v_max_n;
-  int __pyx_v_n;
-  PyObject *__pyx_v_ngram;
-  struct __pyx_obj_3_sa_IntList *__pyx_v_ngram_start;
-  PyObject *__pyx_v_ngram_starts;
-  int __pyx_v_rs;
-  struct __pyx_obj_3_sa_IntList *__pyx_v_run_start;
-  struct __pyx_obj_3_sa_LCP *__pyx_v_self;
-  int __pyx_v_valid;
-  struct __pyx_obj_3_sa_VEB *__pyx_v_veb;
-  int __pyx_t_0;
-};
-
-
 /* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":919
  *         return sorted(result);
  * 
@@ -798,7 +767,7 @@ struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats {
  *         '''When this function is called on the RuleFactory,
  *         it looks up all of the rules that can be used to translate
  */
-struct __pyx_obj_3_sa___pyx_scope_struct_2_input {
+struct __pyx_obj_3_sa___pyx_scope_struct_4_input {
   PyObject_HEAD
   PyObject *__pyx_v_alignment;
   PyObject *__pyx_v_als;
@@ -877,6 +846,68 @@ struct __pyx_obj_3_sa___pyx_scope_struct_2_input {
 };
 
 
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi":7
+ * cdef int INDEX_MASK = (1<<INDEX_SHIFT)-1
+ * 
+ * cdef class Alphabet:             # <<<<<<<<<<<<<<
+ *     cdef readonly StringMap terminals, nonterminals
+ *     cdef int first_nonterminal, last_nonterminal
+ */
+struct __pyx_obj_3_sa_Alphabet {
+  PyObject_HEAD
+  struct __pyx_vtabstruct_3_sa_Alphabet *__pyx_vtab;
+  struct __pyx_obj_3_sa_StringMap *terminals;
+  struct __pyx_obj_3_sa_StringMap *nonterminals;
+  int first_nonterminal;
+  int last_nonterminal;
+  PyObject *id2sym;
+};
+
+struct __pyx_obj_3_sa_Rule {
+  PyObject_HEAD
+  int lhs;
+  struct __pyx_obj_3_sa_Phrase *f;
+  struct __pyx_obj_3_sa_Phrase *e;
+  float *cscores;
+  int n_scores;
+  PyObject *word_alignments;
+};
+
+
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":56
+ * # in the suffix array; if discontiguous, it is the set of
+ * # actual locations (packed into an array)
+ * cdef class PhraseLocation:             # <<<<<<<<<<<<<<
+ *     cdef int sa_low
+ *     cdef int sa_high
+ */
+struct __pyx_obj_3_sa_PhraseLocation {
+  PyObject_HEAD
+  struct __pyx_vtabstruct_3_sa_PhraseLocation *__pyx_vtab;
+  int sa_low;
+  int sa_high;
+  int arr_low;
+  int arr_high;
+  struct __pyx_obj_3_sa_IntList *arr;
+  int num_subpatterns;
+};
+
+
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rule.pxi":141
+ *         return self.syms[i]
+ * 
+ *     def __iter__(self):             # <<<<<<<<<<<<<<
+ *         cdef int i
+ *         for i from 0 <= i < self.n:
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ {
+  PyObject_HEAD
+  int __pyx_v_i;
+  struct __pyx_obj_3_sa_Phrase *__pyx_v_self;
+  int __pyx_t_0;
+};
+
+
 /* "/Users/vchahun/Sandbox/cdec/python/src/sa/alignment.pxi":8
  * # May need to revisit if things get really tight, though.
  * 
@@ -933,21 +964,6 @@ struct __pyx_obj_3_sa_StringMap {
 };
 
 
-/* "/Users/vchahun/Sandbox/cdec/python/src/sa/rule.pxi":141
- *         return self.syms[i]
- * 
- *     def __iter__(self):             # <<<<<<<<<<<<<<
- *         cdef int i
- *         for i from 0 <= i < self.n:
- */
-struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ {
-  PyObject_HEAD
-  int __pyx_v_i;
-  struct __pyx_obj_3_sa_Phrase *__pyx_v_self;
-  int __pyx_t_0;
-};
-
-
 /* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":18
  * cdef int EPSILON = sym_fromstring('*EPS*', True)
  * 
@@ -1021,6 +1037,23 @@ struct __pyx_obj_3_sa_TrieTable {
 };
 
 
+/* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":73
+ *     def read_bitext(self, char* filename, int side):
+ *         with gzip_or_text(filename) as fp:
+ *             data = (line.split(' ||| ')[side] for line in fp)             # <<<<<<<<<<<<<<
+ *             self.read_text_data(data)
+ * 
+ */
+struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr {
+  PyObject_HEAD
+  struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *__pyx_outer_scope;
+  PyObject *__pyx_v_line;
+  PyObject *__pyx_t_0;
+  Py_ssize_t __pyx_t_1;
+  PyObject *(*__pyx_t_2)(PyObject *);
+};
+
+
 /* "/Users/vchahun/Sandbox/cdec/python/src/sa/float_list.pxi":9
  * from libc.string cimport memset, strcpy, strlen
  * 
@@ -1539,6 +1572,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
 
 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); /*proto*/
 
+static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname);
+
 static CYTHON_INLINE long __Pyx_div_long(long, long); /* proto */
 
 static CYTHON_INLINE long __Pyx_mod_long(long, long); /* proto */
@@ -1746,6 +1781,18 @@ static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb);
 
 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, long level); /*proto*/
 
+#include <string.h>
+
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); /*proto*/
+
+#if PY_MAJOR_VERSION >= 3
+#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
+#else
+#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
+#endif
+
 static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject *);
 
 static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject *);
@@ -1868,9 +1915,11 @@ static PyTypeObject *__pyx_ptype_3_sa_TrieTable = 0;
 static PyTypeObject *__pyx_ptype_3_sa_PhraseLocation = 0;
 static PyTypeObject *__pyx_ptype_3_sa_Sampler = 0;
 static PyTypeObject *__pyx_ptype_3_sa_HieroCachingRuleFactory = 0;
-static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct__compute_stats = 0;
-static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_1___iter__ = 0;
-static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_2_input = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct__read_bitext = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_1_genexpr = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_2_compute_stats = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_3___iter__ = 0;
+static PyTypeObject *__pyx_ptype_3_sa___pyx_scope_struct_4_input = 0;
 static int __pyx_v_3_sa_MIN_BOTTOM_SIZE;
 static int __pyx_v_3_sa_MIN_BOTTOM_BITS;
 static int __pyx_v_3_sa_LOWER_MASK[32];
@@ -1957,7 +2006,7 @@ static PyObject *__pyx_pf_3_sa_7IntList_28write(struct __pyx_obj_3_sa_IntList *_
 static PyObject *__pyx_pf_3_sa_7IntList_30read(struct __pyx_obj_3_sa_IntList *__pyx_v_self, char *__pyx_v_filename); /* proto */
 static int __pyx_pf_3_sa_9StringMap___cinit__(struct __pyx_obj_3_sa_StringMap *__pyx_v_self); /* proto */
 static void __pyx_pf_3_sa_9StringMap_2__dealloc__(struct __pyx_obj_3_sa_StringMap *__pyx_v_self); /* proto */
-static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text, int __pyx_v_use_sent_id); /* proto */
+static int __pyx_pf_3_sa_9DataArray___cinit__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text, PyObject *__pyx_v_side, int __pyx_v_use_sent_id); /* proto */
 static Py_ssize_t __pyx_pf_3_sa_9DataArray_2__len__(struct __pyx_obj_3_sa_DataArray *__pyx_v_self); /* proto */
 static PyObject *__pyx_pf_3_sa_9DataArray_4getSentId(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
 static PyObject *__pyx_pf_3_sa_9DataArray_6getSent(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
@@ -1966,10 +2015,13 @@ static PyObject *__pyx_pf_3_sa_9DataArray_10get_id(struct __pyx_obj_3_sa_DataArr
 static PyObject *__pyx_pf_3_sa_9DataArray_12get_word(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_id); /* proto */
 static PyObject *__pyx_pf_3_sa_9DataArray_14write_text(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
 static PyObject *__pyx_pf_3_sa_9DataArray_16read_text(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_18read_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_20write_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_22write_enhanced_handle(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_f); /* proto */
-static PyObject *__pyx_pf_3_sa_9DataArray_24write_enhanced(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_11read_bitext_genexpr(PyObject *__pyx_self); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_18read_bitext(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename, int __pyx_v_side); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_20read_text_data(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_data); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_22read_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_24write_binary(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_26write_enhanced_handle(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, PyObject *__pyx_v_f); /* proto */
+static PyObject *__pyx_pf_3_sa_9DataArray_28write_enhanced(struct __pyx_obj_3_sa_DataArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
 static PyObject *__pyx_pf_3_sa_9Alignment_unlink(CYTHON_UNUSED struct __pyx_obj_3_sa_Alignment *__pyx_v_self, PyObject *__pyx_v_link); /* proto */
 static PyObject *__pyx_pf_3_sa_9Alignment_2get_sent_links(struct __pyx_obj_3_sa_Alignment *__pyx_v_self, int __pyx_v_sent_id); /* proto */
 static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text); /* proto */
@@ -2061,12 +2113,12 @@ static int __pyx_pf_3_sa_14Precomputation___cinit__(struct __pyx_obj_3_sa_Precom
 static PyObject *__pyx_pf_3_sa_14Precomputation_2read_binary(struct __pyx_obj_3_sa_Precomputation *__pyx_v_self, char *__pyx_v_filename); /* proto */
 static PyObject *__pyx_pf_3_sa_14Precomputation_4write_binary(struct __pyx_obj_3_sa_Precomputation *__pyx_v_self, char *__pyx_v_filename); /* proto */
 static PyObject *__pyx_pf_3_sa_14Precomputation_6precompute(struct __pyx_obj_3_sa_Precomputation *__pyx_v_self, PyObject *__pyx_v_stats, struct __pyx_obj_3_sa_SuffixArray *__pyx_v_sarray); /* proto */
-static int __pyx_pf_3_sa_11SuffixArray___cinit__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text); /* proto */
+static int __pyx_pf_3_sa_11SuffixArray___cinit__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_from_binary, PyObject *__pyx_v_from_text, PyObject *__pyx_v_side); /* proto */
 static PyObject *__pyx_pf_3_sa_11SuffixArray_2__getitem__(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
 static PyObject *__pyx_pf_3_sa_11SuffixArray_4getSentId(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
 static PyObject *__pyx_pf_3_sa_11SuffixArray_6getSent(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_i); /* proto */
 static PyObject *__pyx_pf_3_sa_11SuffixArray_8getSentPos(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_loc); /* proto */
-static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
+static PyObject *__pyx_pf_3_sa_11SuffixArray_10read_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_side); /* proto */
 static PyObject *__pyx_pf_3_sa_11SuffixArray_12q3sort(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, int __pyx_v_i, int __pyx_v_j, int __pyx_v_h, struct __pyx_obj_3_sa_IntList *__pyx_v_isa, PyObject *__pyx_v_pad); /* proto */
 static PyObject *__pyx_pf_3_sa_11SuffixArray_14write_text(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
 static PyObject *__pyx_pf_3_sa_11SuffixArray_16read_binary(struct __pyx_obj_3_sa_SuffixArray *__pyx_v_self, char *__pyx_v_filename); /* proto */
@@ -2121,49 +2173,47 @@ static char __pyx_k_8[] = "Requested index %d:%d of %d-length IntList";
 static char __pyx_k_9[] = "Illegal key type %s for IntList";
 static char __pyx_k_13[] = "%s ";
 static char __pyx_k_14[] = "\n";
-static char __pyx_k_18[] = "%d ";
-static char __pyx_k_22[] = "%s %d ";
-static char __pyx_k_24[] = "write_enhanced_handle";
-static char __pyx_k_28[] = "-";
-static char __pyx_k_32[] = "%d-%d ";
-static char __pyx_k_39[] = "%d-%d out of bounds (I=%d,J=%d) in line %d\n";
-static char __pyx_k_42[] = "";
-static char __pyx_k_43[] = "Sort error in CLex";
-static char __pyx_k_45[] = "    ";
-static char __pyx_k_47[] = "%d %f %f ";
-static char __pyx_k_49[] = "%d %s ";
-static char __pyx_k_53[] = "%s %s %.6f %.6f\n";
-static char __pyx_k_55[] = "  (";
-static char __pyx_k_56[] = ")";
-static char __pyx_k_57[] = "Constructing LCP array";
-static char __pyx_k_59[] = "LCP array completed";
-static char __pyx_k_61[] = "[%s,%d]";
-static char __pyx_k_62[] = "[%s]";
-static char __pyx_k_63[] = "\\";
-static char __pyx_k_64[] = " ";
-static char __pyx_k_65[] = "Invalid LHS symbol: %d";
-static char __pyx_k_66[] = "%d-%d";
-static char __pyx_k_67[] = " ||| ";
-static char __pyx_k_68[] = "precompute_secondary_rank";
-static char __pyx_k_69[] = "train_max_initial_size";
-static char __pyx_k_70[] = "Precomputing frequent intersections";
-static char __pyx_k_72[] = "    Computing inverted indexes...";
-static char __pyx_k_74[] = "    Computing collocations...";
-static char __pyx_k_76[] = "        %d sentences";
-static char __pyx_k_81[] = "X ";
-static char __pyx_k_82[] = "ERROR: unexpected pattern %s in set of precomputed collocations";
-static char __pyx_k_83[] = "RANK %d\tCOUNT, COST: %d    %d\tCUMUL: %d, %d";
-static char __pyx_k_84[] = "Precomputed collocations for %d patterns out of %d possible (upper bound %d)";
-static char __pyx_k_85[] = "Precomputed inverted index for %d patterns ";
-static char __pyx_k_86[] = "Precomputation took %f seconds";
-static char __pyx_k_87[] = "    Bucket sort took %f seconds";
-static char __pyx_k_88[] = "    Refining, sort depth = %d";
-static char __pyx_k_89[] = "    Refinement took %f seconds";
-static char __pyx_k_90[] = "    Finalizing sort...";
-static char __pyx_k_92[] = "Suffix array construction took %f seconds";
-static char __pyx_k_93[] = "Unexpected condition found in q3sort: sort from %d to %d";
-static char __pyx_k_98[] = "Sampling strategy: uniform, max sample size = %d";
-static char __pyx_k_99[] = "Sampling strategy: no sampling";
+static char __pyx_k_18[] = " ||| ";
+static char __pyx_k_21[] = "%d ";
+static char __pyx_k_25[] = "%s %d ";
+static char __pyx_k_27[] = "write_enhanced_handle";
+static char __pyx_k_31[] = "-";
+static char __pyx_k_35[] = "%d-%d ";
+static char __pyx_k_42[] = "%d-%d out of bounds (I=%d,J=%d) in line %d\n";
+static char __pyx_k_45[] = "";
+static char __pyx_k_46[] = "Sort error in CLex";
+static char __pyx_k_48[] = "    ";
+static char __pyx_k_50[] = "%d %f %f ";
+static char __pyx_k_52[] = "%d %s ";
+static char __pyx_k_56[] = "%s %s %.6f %.6f\n";
+static char __pyx_k_58[] = "  (";
+static char __pyx_k_59[] = ")";
+static char __pyx_k_60[] = "Constructing LCP array";
+static char __pyx_k_62[] = "LCP array completed";
+static char __pyx_k_64[] = "[%s,%d]";
+static char __pyx_k_65[] = "[%s]";
+static char __pyx_k_66[] = "\\";
+static char __pyx_k_67[] = " ";
+static char __pyx_k_68[] = "Invalid LHS symbol: %d";
+static char __pyx_k_69[] = "%d-%d";
+static char __pyx_k_70[] = "precompute_secondary_rank";
+static char __pyx_k_71[] = "train_max_initial_size";
+static char __pyx_k_72[] = "Precomputing frequent intersections";
+static char __pyx_k_74[] = "    Computing inverted indexes...";
+static char __pyx_k_76[] = "    Computing collocations...";
+static char __pyx_k_78[] = "        %d sentences";
+static char __pyx_k_83[] = "X ";
+static char __pyx_k_84[] = "ERROR: unexpected pattern %s in set of precomputed collocations";
+static char __pyx_k_85[] = "RANK %d\tCOUNT, COST: %d    %d\tCUMUL: %d, %d";
+static char __pyx_k_86[] = "Precomputed collocations for %d patterns out of %d possible (upper bound %d)";
+static char __pyx_k_87[] = "Precomputed inverted index for %d patterns ";
+static char __pyx_k_88[] = "Precomputation took %f seconds";
+static char __pyx_k_89[] = "    Bucket sort took %f seconds";
+static char __pyx_k_90[] = "    Refining, sort depth = %d";
+static char __pyx_k_91[] = "    Refinement took %f seconds";
+static char __pyx_k_92[] = "    Finalizing sort...";
+static char __pyx_k_94[] = "Suffix array construction took %f seconds";
+static char __pyx_k_95[] = "Unexpected condition found in q3sort: sort from %d to %d";
 static char __pyx_k__0[] = "0";
 static char __pyx_k__1[] = "1";
 static char __pyx_k__e[] = "e";
@@ -2173,39 +2223,41 @@ static char __pyx_k__i[] = "i";
 static char __pyx_k__j[] = "j";
 static char __pyx_k__r[] = "r";
 static char __pyx_k__w[] = "w";
-static char __pyx_k_101[] = "require_aligned_terminal";
-static char __pyx_k_102[] = "require_aligned_chunks";
-static char __pyx_k_103[] = "[X]";
-static char __pyx_k_104[] = "Must specify an alignment object";
-static char __pyx_k_106[] = "Reading precomputed data from file %s... ";
-static char __pyx_k_107[] = "Precomputation done with max nonterminals %d, decoder uses %d";
-static char __pyx_k_108[] = "Precomputation done with max terminals %d, decoder uses %d";
-static char __pyx_k_109[] = "Precomputation done with max initial size %d, decoder uses %d";
-static char __pyx_k_110[] = "Precomputation done with min gap size %d, decoder uses %d";
-static char __pyx_k_111[] = "Converting %d hash keys on precomputed inverted index... ";
-static char __pyx_k_112[] = "Converting %d hash keys on precomputed collocations... ";
-static char __pyx_k_113[] = "Processing precomputations took %f seconds";
-static char __pyx_k_114[] = "{";
-  static char __pyx_k_115[] = "(";
-static char __pyx_k_116[] = "}";
-static char __pyx_k_117[] = "get_precomputed_collocation";
-static char __pyx_k_118[] = "double binary";
-static char __pyx_k_119[] = "Keyword trie error";
-static char __pyx_k_121[] = "get_all_nodes_isteps_away";
-static char __pyx_k_122[] = "Total time for rule lookup, extraction, and scoring = %f seconds";
-static char __pyx_k_123[] = "    Extract time = %f seconds";
-static char __pyx_k_124[] = "No aligned terminals";
-static char __pyx_k_125[] = "Unaligned chunk";
-static char __pyx_k_126[] = "Gaps are not tight phrases";
-static char __pyx_k_127[] = "Inside edges of preceding subphrase are not tight";
-static char __pyx_k_128[] = "Inside edges of following subphrase are not tight";
-static char __pyx_k_129[] = "Subphrase [%d, %d] failed integrity check";
-static char __pyx_k_130[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
-static char __pyx_k_131[] = "Unable to extract basic phrase";
-static char __pyx_k_134[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/_sa.pyx";
-static char __pyx_k_135[] = "cdec.sa";
-static char __pyx_k_139[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi";
-static char __pyx_k_140[] = "*EPS*";
+static char __pyx_k_100[] = "Sampling strategy: uniform, max sample size = %d";
+static char __pyx_k_101[] = "Sampling strategy: no sampling";
+static char __pyx_k_103[] = "require_aligned_terminal";
+static char __pyx_k_104[] = "require_aligned_chunks";
+static char __pyx_k_105[] = "[X]";
+static char __pyx_k_106[] = "Must specify an alignment object";
+static char __pyx_k_108[] = "Reading precomputed data from file %s... ";
+static char __pyx_k_109[] = "Precomputation done with max nonterminals %d, decoder uses %d";
+static char __pyx_k_110[] = "Precomputation done with max terminals %d, decoder uses %d";
+static char __pyx_k_111[] = "Precomputation done with max initial size %d, decoder uses %d";
+static char __pyx_k_112[] = "Precomputation done with min gap size %d, decoder uses %d";
+static char __pyx_k_113[] = "Converting %d hash keys on precomputed inverted index... ";
+static char __pyx_k_114[] = "Converting %d hash keys on precomputed collocations... ";
+static char __pyx_k_115[] = "Processing precomputations took %f seconds";
+static char __pyx_k_116[] = "{";
+  static char __pyx_k_117[] = "(";
+static char __pyx_k_118[] = "}";
+static char __pyx_k_119[] = "get_precomputed_collocation";
+static char __pyx_k_120[] = "double binary";
+static char __pyx_k_121[] = "Keyword trie error";
+static char __pyx_k_123[] = "get_all_nodes_isteps_away";
+static char __pyx_k_124[] = "Total time for rule lookup, extraction, and scoring = %f seconds";
+static char __pyx_k_125[] = "    Extract time = %f seconds";
+static char __pyx_k_126[] = "No aligned terminals";
+static char __pyx_k_127[] = "Unaligned chunk";
+static char __pyx_k_128[] = "Gaps are not tight phrases";
+static char __pyx_k_129[] = "Inside edges of preceding subphrase are not tight";
+static char __pyx_k_130[] = "Inside edges of following subphrase are not tight";
+static char __pyx_k_131[] = "Subphrase [%d, %d] failed integrity check";
+static char __pyx_k_132[] = "Didn't extract anything from [%d, %d] -> [%d, %d]";
+static char __pyx_k_133[] = "Unable to extract basic phrase";
+static char __pyx_k_136[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/_sa.pyx";
+static char __pyx_k_137[] = "cdec.sa";
+static char __pyx_k_141[] = "/Users/vchahun/Sandbox/cdec/python/src/sa/sym.pxi";
+static char __pyx_k_142[] = "*EPS*";
 static char __pyx_k__gc[] = "gc";
 static char __pyx_k__sa[] = "sa";
 static char __pyx_k___sa[] = "_sa";
@@ -2229,6 +2281,7 @@ static char __pyx_k__info[] = "info";
 static char __pyx_k__join[] = "join";
 static char __pyx_k__open[] = "open";
 static char __pyx_k__seek[] = "seek";
+static char __pyx_k__side[] = "side";
 static char __pyx_k__size[] = "size";
 static char __pyx_k__skip[] = "skip";
 static char __pyx_k__stop[] = "stop";
@@ -2266,6 +2319,7 @@ static char __pyx_k__sample[] = "sample";
 static char __pyx_k__sarray[] = "sarray";
 static char __pyx_k__scores[] = "scores";
 static char __pyx_k__sorted[] = "sorted";
+static char __pyx_k__source[] = "source";
 static char __pyx_k__string[] = "string";
 static char __pyx_k__unlink[] = "unlink";
 static char __pyx_k__advance[] = "advance";
@@ -2334,6 +2388,7 @@ static char __pyx_k__initial_len[] = "initial_len";
 static char __pyx_k__next_states[] = "next_states";
 static char __pyx_k__precomputed[] = "precomputed";
 static char __pyx_k__read_binary[] = "read_binary";
+static char __pyx_k__read_bitext[] = "read_bitext";
 static char __pyx_k__sample_size[] = "sample_size";
 static char __pyx_k__suffix_link[] = "suffix_link";
 static char __pyx_k__use_sent_id[] = "use_sent_id";
@@ -2344,6 +2399,7 @@ static char __pyx_k__StopIteration[] = "StopIteration";
 static char __pyx_k__alphabet_size[] = "alphabet_size";
 static char __pyx_k__tight_phrases[] = "tight_phrases";
 static char __pyx_k__pattern2phrase[] = "pattern2phrase";
+static char __pyx_k__read_text_data[] = "read_text_data";
 static char __pyx_k__sym_fromstring[] = "sym_fromstring";
 static char __pyx_k__by_slack_factor[] = "by_slack_factor";
 static char __pyx_k__get_next_states[] = "get_next_states";
@@ -2362,11 +2418,11 @@ static char __pyx_k__max_target_length[] = "max_target_length";
 static char __pyx_k__train_min_gap_size[] = "train_min_gap_size";
 static char __pyx_k__pattern2phrase_plus[] = "pattern2phrase_plus";
 static PyObject *__pyx_kp_s_1;
-static PyObject *__pyx_n_s_101;
-static PyObject *__pyx_n_s_102;
-static PyObject *__pyx_kp_s_104;
+static PyObject *__pyx_kp_s_100;
+static PyObject *__pyx_kp_s_101;
+static PyObject *__pyx_n_s_103;
+static PyObject *__pyx_n_s_104;
 static PyObject *__pyx_kp_s_106;
-static PyObject *__pyx_kp_s_107;
 static PyObject *__pyx_kp_s_108;
 static PyObject *__pyx_kp_s_109;
 static PyObject *__pyx_kp_s_110;
@@ -2376,12 +2432,12 @@ static PyObject *__pyx_kp_s_113;
 static PyObject *__pyx_kp_s_114;
 static PyObject *__pyx_kp_s_115;
 static PyObject *__pyx_kp_s_116;
-static PyObject *__pyx_n_s_117;
+static PyObject *__pyx_kp_s_117;
 static PyObject *__pyx_kp_s_118;
-static PyObject *__pyx_kp_s_119;
-static PyObject *__pyx_n_s_121;
-static PyObject *__pyx_kp_s_122;
-static PyObject *__pyx_kp_s_123;
+static PyObject *__pyx_n_s_119;
+static PyObject *__pyx_kp_s_120;
+static PyObject *__pyx_kp_s_121;
+static PyObject *__pyx_n_s_123;
 static PyObject *__pyx_kp_s_124;
 static PyObject *__pyx_kp_s_125;
 static PyObject *__pyx_kp_s_126;
@@ -2391,49 +2447,49 @@ static PyObject *__pyx_kp_s_129;
 static PyObject *__pyx_kp_s_13;
 static PyObject *__pyx_kp_s_130;
 static PyObject *__pyx_kp_s_131;
-static PyObject *__pyx_kp_s_134;
-static PyObject *__pyx_kp_s_135;
-static PyObject *__pyx_kp_s_139;
+static PyObject *__pyx_kp_s_132;
+static PyObject *__pyx_kp_s_133;
+static PyObject *__pyx_kp_s_136;
+static PyObject *__pyx_kp_s_137;
 static PyObject *__pyx_kp_s_14;
-static PyObject *__pyx_kp_s_140;
+static PyObject *__pyx_kp_s_141;
+static PyObject *__pyx_kp_s_142;
 static PyObject *__pyx_kp_s_18;
 static PyObject *__pyx_kp_s_2;
-static PyObject *__pyx_kp_s_22;
-static PyObject *__pyx_n_s_24;
-static PyObject *__pyx_kp_s_28;
+static PyObject *__pyx_kp_s_21;
+static PyObject *__pyx_kp_s_25;
+static PyObject *__pyx_n_s_27;
 static PyObject *__pyx_kp_s_3;
-static PyObject *__pyx_kp_s_32;
-static PyObject *__pyx_kp_s_39;
+static PyObject *__pyx_kp_s_31;
+static PyObject *__pyx_kp_s_35;
 static PyObject *__pyx_kp_s_4;
 static PyObject *__pyx_kp_s_42;
-static PyObject *__pyx_kp_s_43;
 static PyObject *__pyx_kp_s_45;
-static PyObject *__pyx_kp_s_47;
-static PyObject *__pyx_kp_s_49;
+static PyObject *__pyx_kp_s_46;
+static PyObject *__pyx_kp_s_48;
 static PyObject *__pyx_kp_s_5;
-static PyObject *__pyx_kp_s_53;
-static PyObject *__pyx_kp_s_55;
+static PyObject *__pyx_kp_s_50;
+static PyObject *__pyx_kp_s_52;
 static PyObject *__pyx_kp_s_56;
-static PyObject *__pyx_kp_s_57;
+static PyObject *__pyx_kp_s_58;
 static PyObject *__pyx_kp_s_59;
 static PyObject *__pyx_kp_s_6;
-static PyObject *__pyx_kp_s_61;
+static PyObject *__pyx_kp_s_60;
 static PyObject *__pyx_kp_s_62;
-static PyObject *__pyx_kp_s_63;
 static PyObject *__pyx_kp_s_64;
 static PyObject *__pyx_kp_s_65;
 static PyObject *__pyx_kp_s_66;
 static PyObject *__pyx_kp_s_67;
-static PyObject *__pyx_n_s_68;
-static PyObject *__pyx_n_s_69;
+static PyObject *__pyx_kp_s_68;
+static PyObject *__pyx_kp_s_69;
 static PyObject *__pyx_kp_s_7;
-static PyObject *__pyx_kp_s_70;
+static PyObject *__pyx_n_s_70;
+static PyObject *__pyx_n_s_71;
 static PyObject *__pyx_kp_s_72;
 static PyObject *__pyx_kp_s_74;
 static PyObject *__pyx_kp_s_76;
+static PyObject *__pyx_kp_s_78;
 static PyObject *__pyx_kp_s_8;
-static PyObject *__pyx_kp_s_81;
-static PyObject *__pyx_kp_s_82;
 static PyObject *__pyx_kp_s_83;
 static PyObject *__pyx_kp_s_84;
 static PyObject *__pyx_kp_s_85;
@@ -2443,10 +2499,10 @@ static PyObject *__pyx_kp_s_88;
 static PyObject *__pyx_kp_s_89;
 static PyObject *__pyx_kp_s_9;
 static PyObject *__pyx_kp_s_90;
+static PyObject *__pyx_kp_s_91;
 static PyObject *__pyx_kp_s_92;
-static PyObject *__pyx_kp_s_93;
-static PyObject *__pyx_kp_s_98;
-static PyObject *__pyx_kp_s_99;
+static PyObject *__pyx_kp_s_94;
+static PyObject *__pyx_kp_s_95;
 static PyObject *__pyx_kp_s__0;
 static PyObject *__pyx_kp_s__1;
 static PyObject *__pyx_n_s__END_OF_FILE;
@@ -2564,7 +2620,9 @@ static PyObject *__pyx_n_s__range;
 static PyObject *__pyx_n_s__reachable;
 static PyObject *__pyx_n_s__reachable_buffer;
 static PyObject *__pyx_n_s__read_binary;
+static PyObject *__pyx_n_s__read_bitext;
 static PyObject *__pyx_n_s__read_text;
+static PyObject *__pyx_n_s__read_text_data;
 static PyObject *__pyx_n_s__res;
 static PyObject *__pyx_n_s__reset;
 static PyObject *__pyx_n_s__resource;
@@ -2581,9 +2639,11 @@ static PyObject *__pyx_n_s__scores;
 static PyObject *__pyx_n_s__seek;
 static PyObject *__pyx_n_s__setdefault;
 static PyObject *__pyx_n_s__shortest;
+static PyObject *__pyx_n_s__side;
 static PyObject *__pyx_n_s__size;
 static PyObject *__pyx_n_s__skip;
 static PyObject *__pyx_n_s__sorted;
+static PyObject *__pyx_n_s__source;
 static PyObject *__pyx_n_s__spanlen;
 static PyObject *__pyx_n_s__split;
 static PyObject *__pyx_n_s__start;
@@ -2618,8 +2678,8 @@ static PyObject *__pyx_int_10;
 static PyObject *__pyx_int_20;
 static PyObject *__pyx_int_1000;
 static PyObject *__pyx_int_65536;
-static PyObject *__pyx_k_38;
-static PyObject *__pyx_k_97;
+static PyObject *__pyx_k_41;
+static PyObject *__pyx_k_99;
 static PyObject *__pyx_k_tuple_10;
 static PyObject *__pyx_k_tuple_11;
 static PyObject *__pyx_k_tuple_12;
@@ -2628,49 +2688,51 @@ static PyObject *__pyx_k_tuple_16;
 static PyObject *__pyx_k_tuple_17;
 static PyObject *__pyx_k_tuple_19;
 static PyObject *__pyx_k_tuple_20;
-static PyObject *__pyx_k_tuple_21;
+static PyObject *__pyx_k_tuple_22;
 static PyObject *__pyx_k_tuple_23;
-static PyObject *__pyx_k_tuple_25;
+static PyObject *__pyx_k_tuple_24;
 static PyObject *__pyx_k_tuple_26;
-static PyObject *__pyx_k_tuple_27;
+static PyObject *__pyx_k_tuple_28;
 static PyObject *__pyx_k_tuple_29;
 static PyObject *__pyx_k_tuple_30;
-static PyObject *__pyx_k_tuple_31;
+static PyObject *__pyx_k_tuple_32;
 static PyObject *__pyx_k_tuple_33;
 static PyObject *__pyx_k_tuple_34;
-static PyObject *__pyx_k_tuple_35;
 static PyObject *__pyx_k_tuple_36;
 static PyObject *__pyx_k_tuple_37;
+static PyObject *__pyx_k_tuple_38;
+static PyObject *__pyx_k_tuple_39;
 static PyObject *__pyx_k_tuple_40;
-static PyObject *__pyx_k_tuple_41;
+static PyObject *__pyx_k_tuple_43;
 static PyObject *__pyx_k_tuple_44;
-static PyObject *__pyx_k_tuple_46;
-static PyObject *__pyx_k_tuple_48;
-static PyObject *__pyx_k_tuple_50;
+static PyObject *__pyx_k_tuple_47;
+static PyObject *__pyx_k_tuple_49;
 static PyObject *__pyx_k_tuple_51;
-static PyObject *__pyx_k_tuple_52;
+static PyObject *__pyx_k_tuple_53;
 static PyObject *__pyx_k_tuple_54;
-static PyObject *__pyx_k_tuple_58;
-static PyObject *__pyx_k_tuple_60;
-static PyObject *__pyx_k_tuple_71;
+static PyObject *__pyx_k_tuple_55;
+static PyObject *__pyx_k_tuple_57;
+static PyObject *__pyx_k_tuple_61;
+static PyObject *__pyx_k_tuple_63;
 static PyObject *__pyx_k_tuple_73;
 static PyObject *__pyx_k_tuple_75;
 static PyObject *__pyx_k_tuple_77;
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 static PyObject *__pyx_k_tuple_79;
 static PyObject *__pyx_k_tuple_80;
-static PyObject *__pyx_k_tuple_91;
-static PyObject *__pyx_k_tuple_94;
-static PyObject *__pyx_k_tuple_95;
+static PyObject *__pyx_k_tuple_81;
+static PyObject *__pyx_k_tuple_82;
+static PyObject *__pyx_k_tuple_93;
 static PyObject *__pyx_k_tuple_96;
-static PyObject *__pyx_k_tuple_100;
-static PyObject *__pyx_k_tuple_105;
-static PyObject *__pyx_k_tuple_120;
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-static PyObject *__pyx_k_tuple_137;
-static PyObject *__pyx_k_codeobj_133;
-static PyObject *__pyx_k_codeobj_138;
+static PyObject *__pyx_k_tuple_97;
+static PyObject *__pyx_k_tuple_98;
+static PyObject *__pyx_k_tuple_102;
+static PyObject *__pyx_k_tuple_107;
+static PyObject *__pyx_k_tuple_122;
+static PyObject *__pyx_k_tuple_134;
+static PyObject *__pyx_k_tuple_138;
+static PyObject *__pyx_k_tuple_139;
+static PyObject *__pyx_k_codeobj_135;
+static PyObject *__pyx_k_codeobj_140;
 
 /* "_sa.pyx":5
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   PyObject *__pyx_v_from_text = 0;
+  PyObject *__pyx_v_side = 0;
   int __pyx_v_use_sent_id;
   int __pyx_r;
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-    PyObject* values[3] = {0,0,0};
+    static PyObject **__pyx_pyargnames[] = {&__pyx_n_s__from_binary,&__pyx_n_s__from_text,&__pyx_n_s__side,&__pyx_n_s__use_sent_id,0};
+    PyObject* values[4] = {0,0,0,0};
 
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     values[1] = ((PyObject *)Py_None);
+    values[2] = ((PyObject *)Py_None);
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       Py_ssize_t kw_args;
       const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
       switch (pos_args) {
+        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
         case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
         case  2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
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-          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s__use_sent_id);
+          PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s__side);
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+        case  3:
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+        case  4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
         case  3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
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+  __Pyx_RaiseArgtupleInvalid("__cinit__", 0, 0, 4, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[3]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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+  __pyx_r = __pyx_pf_3_sa_9DataArray___cinit__(((struct __pyx_obj_3_sa_DataArray *)__pyx_v_self), __pyx_v_from_binary, __pyx_v_from_text, __pyx_v_side, __pyx_v_use_sent_id);
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- *     def __cinit__(self, from_binary=None, from_text=None, bint use_sent_id=False):
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-  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":118
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-    /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":119
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-  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":134
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-    /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":135
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-    /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":138
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-            {__pyx_filename = __pyx_f[3]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L9_except_error;}
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@@ -8888,13 +9489,13 @@ static PyObject *__pyx_pf_3_sa_9DataArray_24write_enhanced(struct __pyx_obj_3_sa
     }
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-        __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_25, NULL);
+        __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_28, NULL);
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-        if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
         __Pyx_GOTREF(__pyx_t_7);
         __pyx_t_11 = __Pyx_PyObject_IsTrue(__pyx_t_7);
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-        if (unlikely(__pyx_t_11 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        if (unlikely(__pyx_t_11 < 0)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 157; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
       }
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@@ -9350,7 +9951,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
  *         self.sent_index = IntList(1000,1000)
  *         if from_binary:
  */
-  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_k_tuple_26), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_k_tuple_29), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 46; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __Pyx_GIVEREF(__pyx_t_1);
   __Pyx_GOTREF(__pyx_v_self->links);
@@ -9365,7 +9966,7 @@ static int __pyx_pf_3_sa_9Alignment_4__cinit__(struct __pyx_obj_3_sa_Alignment *
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-  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_k_tuple_27), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(((PyObject *)((PyObject*)__pyx_ptype_3_sa_IntList)), ((PyObject *)__pyx_k_tuple_30), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 47; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -9687,7 +10288,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
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               __pyx_t_3 = PyObject_GetAttr(__pyx_v_pair, __pyx_n_s__split); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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+              __pyx_t_12 = PyObject_Call(__pyx_t_3, ((PyObject *)__pyx_k_tuple_32), NULL); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 59; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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@@ -9871,7 +10472,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_6read_text(struct __pyx_obj_3_sa_Align
     }
     /*finally:*/ {
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-        __pyx_t_7 = PyObject_Call(__pyx_t_4, __pyx_k_tuple_30, NULL);
+        __pyx_t_7 = PyObject_Call(__pyx_t_4, __pyx_k_tuple_33, NULL);
         __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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@@ -10174,7 +10775,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_10write_text(struct __pyx_obj_3_sa_Ali
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               __Pyx_GOTREF(__pyx_t_10);
-              __pyx_t_2 = PyObject_Call(__pyx_t_10, ((PyObject *)__pyx_k_tuple_31), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+              __pyx_t_2 = PyObject_Call(__pyx_t_10, ((PyObject *)__pyx_k_tuple_34), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 75; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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@@ -10213,7 +10814,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_10write_text(struct __pyx_obj_3_sa_Ali
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-            __pyx_t_12 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_32), __pyx_t_13); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+            __pyx_t_12 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_35), __pyx_t_13); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 77; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
             __Pyx_GOTREF(((PyObject *)__pyx_t_12));
             __Pyx_DECREF(__pyx_t_13); __pyx_t_13 = 0;
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@@ -10239,7 +10840,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_10write_text(struct __pyx_obj_3_sa_Ali
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-          __pyx_t_1 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_k_tuple_33), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 78; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+          __pyx_t_1 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_k_tuple_36), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 78; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
           __Pyx_GOTREF(__pyx_t_1);
           __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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@@ -10320,7 +10921,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_10write_text(struct __pyx_obj_3_sa_Ali
     }
     /*finally:*/ {
       if (__pyx_t_3) {
-        __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_34, NULL);
+        __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_37, NULL);
         __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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@@ -10591,7 +11192,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
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             __pyx_t_1 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
             __Pyx_GOTREF(__pyx_t_1);
-            __pyx_t_2 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_18), __pyx_v_link); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+            __pyx_t_2 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_link); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 91; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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@@ -10615,7 +11216,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
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           __pyx_t_4 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
           __Pyx_GOTREF(__pyx_t_4);
-          __pyx_t_2 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_k_tuple_35), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+          __pyx_t_2 = PyObject_Call(__pyx_t_4, ((PyObject *)__pyx_k_tuple_38), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 92; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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@@ -10674,7 +11275,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
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             __pyx_t_4 = PyObject_GetAttr(__pyx_v_f, __pyx_n_s__write); if (unlikely(!__pyx_t_4)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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-            __pyx_t_10 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_18), __pyx_v_i); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
+            __pyx_t_10 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_21), __pyx_v_i); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 94; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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@@ -10698,7 +11299,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
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+          __pyx_t_10 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_39), NULL); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[4]; __pyx_lineno = 95; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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@@ -10777,7 +11378,7 @@ static PyObject *__pyx_pf_3_sa_9Alignment_14write_enhanced(struct __pyx_obj_3_sa
     }
     /*finally:*/ {
       if (__pyx_t_3) {
-        __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_37, NULL);
+        __pyx_t_7 = PyObject_Call(__pyx_t_3, __pyx_k_tuple_40, NULL);
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@@ -11269,7 +11870,7 @@ static int __pyx_pw_3_sa_5BiLex_1__cinit__(PyObject *__pyx_v_self, PyObject *__p
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     values[0] = ((PyObject *)Py_None);
-    values[1] = __pyx_k_38;
+    values[1] = __pyx_k_41;
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@@ -12220,7 +12821,7 @@ static PyObject *__pyx_f_3_sa_5BiLex_compute_from_data(struct __pyx_obj_3_sa_BiL
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         __pyx_t_12 = 0;
-        __pyx_t_12 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_39), ((PyObject *)__pyx_t_13)); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+        __pyx_t_12 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_42), ((PyObject *)__pyx_t_13)); if (unlikely(!__pyx_t_12)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -14311,7 +14912,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
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+          __pyx_t_1 = PyObject_Call(__pyx_t_12, ((PyObject *)__pyx_k_tuple_43), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 302; __pyx_clineno = __LINE__; goto __pyx_L7_error;}
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     }
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-        __pyx_t_7 = PyObject_Call(__pyx_t_4, __pyx_k_tuple_41, NULL);
+        __pyx_t_7 = PyObject_Call(__pyx_t_4, __pyx_k_tuple_44, NULL);
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@@ -14714,7 +15315,7 @@ static PyObject *__pyx_pf_3_sa_5BiLex_10read_text(struct __pyx_obj_3_sa_BiLex *_
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-    __pyx_t_3 = ((PyObject *)__pyx_kp_s_42);
+    __pyx_t_3 = ((PyObject *)__pyx_kp_s_45);
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+    __pyx_t_2 = PyObject_Call(__pyx_builtin_Exception, ((PyObject *)__pyx_k_tuple_47), NULL); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 344; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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  *         result = result + "}"
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+  __pyx_t_1 = PyObject_GetAttr(((PyObject *)__pyx_v_self), __pyx_n_s_119); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 812; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-      __Pyx_INCREF(((PyObject *)__pyx_kp_s_118));
+      __Pyx_INCREF(((PyObject *)__pyx_kp_s_120));
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-      __pyx_v_intersect_method = ((PyObject *)__pyx_kp_s_118);
+      __pyx_v_intersect_method = ((PyObject *)__pyx_kp_s_120);
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 static PyObject *__pyx_pf_3_sa_23HieroCachingRuleFactory_22input(struct __pyx_obj_3_sa_HieroCachingRuleFactory *__pyx_v_self, PyObject *__pyx_v_fwords, PyObject *__pyx_v_models) {
-  struct __pyx_obj_3_sa___pyx_scope_struct_2_input *__pyx_cur_scope;
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 {
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+            __pyx_t_10 = PyObject_GetAttr(((PyObject *)__pyx_cur_scope->__pyx_v_self), __pyx_n_s_123); if (unlikely(!__pyx_t_10)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1117; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_122));
+  __Pyx_INCREF(((PyObject *)__pyx_kp_s_124));
+  PyTuple_SET_ITEM(__pyx_t_12, 0, ((PyObject *)__pyx_kp_s_124));
+  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_124));
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@@ -46952,9 +47599,9 @@ static PyObject *__pyx_gb_3_sa_23HieroCachingRuleFactory_24generator2(__pyx_Gene
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-  PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_kp_s_123));
-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_123));
+  __Pyx_INCREF(((PyObject *)__pyx_kp_s_125));
+  PyTuple_SET_ITEM(__pyx_t_15, 0, ((PyObject *)__pyx_kp_s_125));
+  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_125));
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@@ -49754,8 +50401,8 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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-  __Pyx_INCREF(((PyObject *)__pyx_kp_s_42));
-  __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_42);
+  __Pyx_INCREF(((PyObject *)__pyx_kp_s_45));
+  __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_45);
 
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  *             if self.require_aligned_chunks and num_aligned_chunks < num_chunks:
  */
-      __Pyx_INCREF(((PyObject *)__pyx_kp_s_124));
+      __Pyx_INCREF(((PyObject *)__pyx_kp_s_126));
       __Pyx_DECREF(__pyx_v_reason_for_failure);
-      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_124);
+      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_126);
 
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@@ -50167,9 +50814,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  *                 met_constraints = 0
  * 
  */
-      __Pyx_INCREF(((PyObject *)__pyx_kp_s_125));
+      __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
       __Pyx_DECREF(__pyx_v_reason_for_failure);
-      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_125);
+      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
 
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  *                     met_constraints = 0
  *                     break
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-        __Pyx_INCREF(((PyObject *)__pyx_kp_s_126));
+        __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
         __Pyx_DECREF(__pyx_v_reason_for_failure);
-        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_126);
+        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
 
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@@ -50269,9 +50916,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  *                     met_constraints = 0
  *                     break
  */
-        __Pyx_INCREF(((PyObject *)__pyx_kp_s_126));
+        __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
         __Pyx_DECREF(__pyx_v_reason_for_failure);
-        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_126);
+        __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
 
         /* "/Users/vchahun/Sandbox/cdec/python/src/sa/rulefactory.pxi":1500
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  *                 else:
  *                     gap_start = 1
  */
-            __Pyx_INCREF(((PyObject *)__pyx_kp_s_127));
+            __Pyx_INCREF(((PyObject *)__pyx_kp_s_129));
             __Pyx_DECREF(__pyx_v_reason_for_failure);
-            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_127);
+            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_129);
             goto __pyx_L38;
           }
           __pyx_L38:;
@@ -50681,9 +51328,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
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  *                     if self.tight_phrases and f_links_low[f_high-1] == -1:
  */
-            __Pyx_INCREF(((PyObject *)__pyx_kp_s_128));
+            __Pyx_INCREF(((PyObject *)__pyx_kp_s_130));
             __Pyx_DECREF(__pyx_v_reason_for_failure);
-            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_128);
+            __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_130);
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           __pyx_L45:;
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+            __pyx_t_14 = PyNumber_Remainder(((PyObject *)__pyx_kp_s_132), ((PyObject *)__pyx_t_15)); if (unlikely(!__pyx_t_14)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 1595; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -53335,9 +53982,9 @@ static PyObject *__pyx_f_3_sa_23HieroCachingRuleFactory_extract(struct __pyx_obj
  * 
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-      __Pyx_INCREF(((PyObject *)__pyx_kp_s_131));
+      __Pyx_INCREF(((PyObject *)__pyx_kp_s_133));
       __Pyx_DECREF(__pyx_v_reason_for_failure);
-      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_131);
+      __pyx_v_reason_for_failure = ((PyObject *)__pyx_kp_s_133);
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   {__Pyx_NAMESTR("read_text"), (PyCFunction)__pyx_pw_3_sa_9DataArray_17read_text, METH_O, __Pyx_DOCSTR(0)},
-  {__Pyx_NAMESTR("read_binary"), (PyCFunction)__pyx_pw_3_sa_9DataArray_19read_binary, METH_O, __Pyx_DOCSTR(0)},
-  {__Pyx_NAMESTR("write_binary"), (PyCFunction)__pyx_pw_3_sa_9DataArray_21write_binary, METH_O, __Pyx_DOCSTR(0)},
-  {__Pyx_NAMESTR("write_enhanced_handle"), (PyCFunction)__pyx_pw_3_sa_9DataArray_23write_enhanced_handle, METH_O, __Pyx_DOCSTR(0)},
-  {__Pyx_NAMESTR("write_enhanced"), (PyCFunction)__pyx_pw_3_sa_9DataArray_25write_enhanced, METH_O, __Pyx_DOCSTR(0)},
+  {__Pyx_NAMESTR("read_bitext"), (PyCFunction)__pyx_pw_3_sa_9DataArray_19read_bitext, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(0)},
+  {__Pyx_NAMESTR("read_text_data"), (PyCFunction)__pyx_pw_3_sa_9DataArray_21read_text_data, METH_O, __Pyx_DOCSTR(0)},
+  {__Pyx_NAMESTR("read_binary"), (PyCFunction)__pyx_pw_3_sa_9DataArray_23read_binary, METH_O, __Pyx_DOCSTR(0)},
+  {__Pyx_NAMESTR("write_binary"), (PyCFunction)__pyx_pw_3_sa_9DataArray_25write_binary, METH_O, __Pyx_DOCSTR(0)},
+  {__Pyx_NAMESTR("write_enhanced_handle"), (PyCFunction)__pyx_pw_3_sa_9DataArray_27write_enhanced_handle, METH_O, __Pyx_DOCSTR(0)},
+  {__Pyx_NAMESTR("write_enhanced"), (PyCFunction)__pyx_pw_3_sa_9DataArray_29write_enhanced, METH_O, __Pyx_DOCSTR(0)},
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+  {__Pyx_NAMESTR("read_text"), (PyCFunction)__pyx_pw_3_sa_11SuffixArray_11read_text, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_3_sa_11SuffixArray_10read_text)},
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 };
 
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-  struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *p;
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct__read_bitext(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+  struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *p;
+  PyObject *o = (*t->tp_alloc)(t, 0);
+  if (!o) return 0;
+  p = ((struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *)o);
+  p->__pyx_v_fp = 0;
+  return o;
+}
+
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct__read_bitext(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *p = (struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *)o;
+  Py_XDECREF(p->__pyx_v_fp);
+  (*Py_TYPE(o)->tp_free)(o);
+}
+
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct__read_bitext(PyObject *o, visitproc v, void *a) {
+  int e;
+  struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *p = (struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *)o;
+  if (p->__pyx_v_fp) {
+    e = (*v)(p->__pyx_v_fp, a); if (e) return e;
+  }
+  return 0;
+}
+
+static int __pyx_tp_clear_3_sa___pyx_scope_struct__read_bitext(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *p = (struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *)o;
+  PyObject* tmp;
+  tmp = ((PyObject*)p->__pyx_v_fp);
+  p->__pyx_v_fp = Py_None; Py_INCREF(Py_None);
+  Py_XDECREF(tmp);
+  return 0;
+}
+
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct__read_bitext[] = {
+  {0, 0, 0, 0}
+};
+
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct__read_bitext = {
+  0, /*nb_add*/
+  0, /*nb_subtract*/
+  0, /*nb_multiply*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_divide*/
+  #endif
+  0, /*nb_remainder*/
+  0, /*nb_divmod*/
+  0, /*nb_power*/
+  0, /*nb_negative*/
+  0, /*nb_positive*/
+  0, /*nb_absolute*/
+  0, /*nb_nonzero*/
+  0, /*nb_invert*/
+  0, /*nb_lshift*/
+  0, /*nb_rshift*/
+  0, /*nb_and*/
+  0, /*nb_xor*/
+  0, /*nb_or*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_coerce*/
+  #endif
+  0, /*nb_int*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_long*/
+  #else
+  0, /*reserved*/
+  #endif
+  0, /*nb_float*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_oct*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_hex*/
+  #endif
+  0, /*nb_inplace_add*/
+  0, /*nb_inplace_subtract*/
+  0, /*nb_inplace_multiply*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_inplace_divide*/
+  #endif
+  0, /*nb_inplace_remainder*/
+  0, /*nb_inplace_power*/
+  0, /*nb_inplace_lshift*/
+  0, /*nb_inplace_rshift*/
+  0, /*nb_inplace_and*/
+  0, /*nb_inplace_xor*/
+  0, /*nb_inplace_or*/
+  0, /*nb_floor_divide*/
+  0, /*nb_true_divide*/
+  0, /*nb_inplace_floor_divide*/
+  0, /*nb_inplace_true_divide*/
+  #if PY_VERSION_HEX >= 0x02050000
+  0, /*nb_index*/
+  #endif
+};
+
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct__read_bitext = {
+  0, /*sq_length*/
+  0, /*sq_concat*/
+  0, /*sq_repeat*/
+  0, /*sq_item*/
+  0, /*sq_slice*/
+  0, /*sq_ass_item*/
+  0, /*sq_ass_slice*/
+  0, /*sq_contains*/
+  0, /*sq_inplace_concat*/
+  0, /*sq_inplace_repeat*/
+};
+
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct__read_bitext = {
+  0, /*mp_length*/
+  0, /*mp_subscript*/
+  0, /*mp_ass_subscript*/
+};
+
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct__read_bitext = {
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getreadbuffer*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getwritebuffer*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getsegcount*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getcharbuffer*/
+  #endif
+  #if PY_VERSION_HEX >= 0x02060000
+  0, /*bf_getbuffer*/
+  #endif
+  #if PY_VERSION_HEX >= 0x02060000
+  0, /*bf_releasebuffer*/
+  #endif
+};
+
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__read_bitext = {
+  PyVarObject_HEAD_INIT(0, 0)
+  __Pyx_NAMESTR("_sa.__pyx_scope_struct__read_bitext"), /*tp_name*/
+  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext), /*tp_basicsize*/
+  0, /*tp_itemsize*/
+  __pyx_tp_dealloc_3_sa___pyx_scope_struct__read_bitext, /*tp_dealloc*/
+  0, /*tp_print*/
+  0, /*tp_getattr*/
+  0, /*tp_setattr*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*tp_compare*/
+  #else
+  0, /*reserved*/
+  #endif
+  0, /*tp_repr*/
+  &__pyx_tp_as_number___pyx_scope_struct__read_bitext, /*tp_as_number*/
+  &__pyx_tp_as_sequence___pyx_scope_struct__read_bitext, /*tp_as_sequence*/
+  &__pyx_tp_as_mapping___pyx_scope_struct__read_bitext, /*tp_as_mapping*/
+  0, /*tp_hash*/
+  0, /*tp_call*/
+  0, /*tp_str*/
+  0, /*tp_getattro*/
+  0, /*tp_setattro*/
+  &__pyx_tp_as_buffer___pyx_scope_struct__read_bitext, /*tp_as_buffer*/
+  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
+  0, /*tp_doc*/
+  __pyx_tp_traverse_3_sa___pyx_scope_struct__read_bitext, /*tp_traverse*/
+  __pyx_tp_clear_3_sa___pyx_scope_struct__read_bitext, /*tp_clear*/
+  0, /*tp_richcompare*/
+  0, /*tp_weaklistoffset*/
+  0, /*tp_iter*/
+  0, /*tp_iternext*/
+  __pyx_methods_3_sa___pyx_scope_struct__read_bitext, /*tp_methods*/
+  0, /*tp_members*/
+  0, /*tp_getset*/
+  0, /*tp_base*/
+  0, /*tp_dict*/
+  0, /*tp_descr_get*/
+  0, /*tp_descr_set*/
+  0, /*tp_dictoffset*/
+  0, /*tp_init*/
+  0, /*tp_alloc*/
+  __pyx_tp_new_3_sa___pyx_scope_struct__read_bitext, /*tp_new*/
+  0, /*tp_free*/
+  0, /*tp_is_gc*/
+  0, /*tp_bases*/
+  0, /*tp_mro*/
+  0, /*tp_cache*/
+  0, /*tp_subclasses*/
+  0, /*tp_weaklist*/
+  0, /*tp_del*/
+  #if PY_VERSION_HEX >= 0x02060000
+  0, /*tp_version_tag*/
+  #endif
+};
+
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_1_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *p;
+  PyObject *o = (*t->tp_alloc)(t, 0);
+  if (!o) return 0;
+  p = ((struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *)o);
+  p->__pyx_outer_scope = 0;
+  p->__pyx_v_line = 0;
+  p->__pyx_t_0 = 0;
+  return o;
+}
+
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_1_genexpr(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *)o;
+  Py_XDECREF(((PyObject *)p->__pyx_outer_scope));
+  Py_XDECREF(p->__pyx_v_line);
+  Py_XDECREF(p->__pyx_t_0);
+  (*Py_TYPE(o)->tp_free)(o);
+}
+
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct_1_genexpr(PyObject *o, visitproc v, void *a) {
+  int e;
+  struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *)o;
+  if (p->__pyx_outer_scope) {
+    e = (*v)(((PyObject*)p->__pyx_outer_scope), a); if (e) return e;
+  }
+  if (p->__pyx_v_line) {
+    e = (*v)(p->__pyx_v_line, a); if (e) return e;
+  }
+  if (p->__pyx_t_0) {
+    e = (*v)(p->__pyx_t_0, a); if (e) return e;
+  }
+  return 0;
+}
+
+static int __pyx_tp_clear_3_sa___pyx_scope_struct_1_genexpr(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr *)o;
+  PyObject* tmp;
+  tmp = ((PyObject*)p->__pyx_outer_scope);
+  p->__pyx_outer_scope = ((struct __pyx_obj_3_sa___pyx_scope_struct__read_bitext *)Py_None); Py_INCREF(Py_None);
+  Py_XDECREF(tmp);
+  tmp = ((PyObject*)p->__pyx_v_line);
+  p->__pyx_v_line = Py_None; Py_INCREF(Py_None);
+  Py_XDECREF(tmp);
+  tmp = ((PyObject*)p->__pyx_t_0);
+  p->__pyx_t_0 = Py_None; Py_INCREF(Py_None);
+  Py_XDECREF(tmp);
+  return 0;
+}
+
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_1_genexpr[] = {
+  {0, 0, 0, 0}
+};
+
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_1_genexpr = {
+  0, /*nb_add*/
+  0, /*nb_subtract*/
+  0, /*nb_multiply*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_divide*/
+  #endif
+  0, /*nb_remainder*/
+  0, /*nb_divmod*/
+  0, /*nb_power*/
+  0, /*nb_negative*/
+  0, /*nb_positive*/
+  0, /*nb_absolute*/
+  0, /*nb_nonzero*/
+  0, /*nb_invert*/
+  0, /*nb_lshift*/
+  0, /*nb_rshift*/
+  0, /*nb_and*/
+  0, /*nb_xor*/
+  0, /*nb_or*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_coerce*/
+  #endif
+  0, /*nb_int*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_long*/
+  #else
+  0, /*reserved*/
+  #endif
+  0, /*nb_float*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_oct*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_hex*/
+  #endif
+  0, /*nb_inplace_add*/
+  0, /*nb_inplace_subtract*/
+  0, /*nb_inplace_multiply*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*nb_inplace_divide*/
+  #endif
+  0, /*nb_inplace_remainder*/
+  0, /*nb_inplace_power*/
+  0, /*nb_inplace_lshift*/
+  0, /*nb_inplace_rshift*/
+  0, /*nb_inplace_and*/
+  0, /*nb_inplace_xor*/
+  0, /*nb_inplace_or*/
+  0, /*nb_floor_divide*/
+  0, /*nb_true_divide*/
+  0, /*nb_inplace_floor_divide*/
+  0, /*nb_inplace_true_divide*/
+  #if PY_VERSION_HEX >= 0x02050000
+  0, /*nb_index*/
+  #endif
+};
+
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_1_genexpr = {
+  0, /*sq_length*/
+  0, /*sq_concat*/
+  0, /*sq_repeat*/
+  0, /*sq_item*/
+  0, /*sq_slice*/
+  0, /*sq_ass_item*/
+  0, /*sq_ass_slice*/
+  0, /*sq_contains*/
+  0, /*sq_inplace_concat*/
+  0, /*sq_inplace_repeat*/
+};
+
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_1_genexpr = {
+  0, /*mp_length*/
+  0, /*mp_subscript*/
+  0, /*mp_ass_subscript*/
+};
+
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_1_genexpr = {
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getreadbuffer*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getwritebuffer*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getsegcount*/
+  #endif
+  #if PY_MAJOR_VERSION < 3
+  0, /*bf_getcharbuffer*/
+  #endif
+  #if PY_VERSION_HEX >= 0x02060000
+  0, /*bf_getbuffer*/
+  #endif
+  #if PY_VERSION_HEX >= 0x02060000
+  0, /*bf_releasebuffer*/
+  #endif
+};
+
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1_genexpr = {
+  PyVarObject_HEAD_INIT(0, 0)
+  __Pyx_NAMESTR("_sa.__pyx_scope_struct_1_genexpr"), /*tp_name*/
+  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_1_genexpr), /*tp_basicsize*/
+  0, /*tp_itemsize*/
+  __pyx_tp_dealloc_3_sa___pyx_scope_struct_1_genexpr, /*tp_dealloc*/
+  0, /*tp_print*/
+  0, /*tp_getattr*/
+  0, /*tp_setattr*/
+  #if PY_MAJOR_VERSION < 3
+  0, /*tp_compare*/
+  #else
+  0, /*reserved*/
+  #endif
+  0, /*tp_repr*/
+  &__pyx_tp_as_number___pyx_scope_struct_1_genexpr, /*tp_as_number*/
+  &__pyx_tp_as_sequence___pyx_scope_struct_1_genexpr, /*tp_as_sequence*/
+  &__pyx_tp_as_mapping___pyx_scope_struct_1_genexpr, /*tp_as_mapping*/
+  0, /*tp_hash*/
+  0, /*tp_call*/
+  0, /*tp_str*/
+  0, /*tp_getattro*/
+  0, /*tp_setattro*/
+  &__pyx_tp_as_buffer___pyx_scope_struct_1_genexpr, /*tp_as_buffer*/
+  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
+  0, /*tp_doc*/
+  __pyx_tp_traverse_3_sa___pyx_scope_struct_1_genexpr, /*tp_traverse*/
+  __pyx_tp_clear_3_sa___pyx_scope_struct_1_genexpr, /*tp_clear*/
+  0, /*tp_richcompare*/
+  0, /*tp_weaklistoffset*/
+  0, /*tp_iter*/
+  0, /*tp_iternext*/
+  __pyx_methods_3_sa___pyx_scope_struct_1_genexpr, /*tp_methods*/
+  0, /*tp_members*/
+  0, /*tp_getset*/
+  0, /*tp_base*/
+  0, /*tp_dict*/
+  0, /*tp_descr_get*/
+  0, /*tp_descr_set*/
+  0, /*tp_dictoffset*/
+  0, /*tp_init*/
+  0, /*tp_alloc*/
+  __pyx_tp_new_3_sa___pyx_scope_struct_1_genexpr, /*tp_new*/
+  0, /*tp_free*/
+  0, /*tp_is_gc*/
+  0, /*tp_bases*/
+  0, /*tp_mro*/
+  0, /*tp_cache*/
+  0, /*tp_subclasses*/
+  0, /*tp_weaklist*/
+  0, /*tp_del*/
+  #if PY_VERSION_HEX >= 0x02060000
+  0, /*tp_version_tag*/
+  #endif
+};
+
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_compute_stats(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
-  p = ((struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o);
+  p = ((struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o);
   p->__pyx_v_ngram = 0;
   p->__pyx_v_ngram_start = 0;
   p->__pyx_v_ngram_starts = 0;
@@ -58469,8 +59516,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct__compute_stats(PyTypeObjec
   return o;
 }
 
-static void __pyx_tp_dealloc_3_sa___pyx_scope_struct__compute_stats(PyObject *o) {
-  struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o;
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_compute_stats(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o;
   Py_XDECREF(((PyObject *)p->__pyx_v_ngram));
   Py_XDECREF(((PyObject *)p->__pyx_v_ngram_start));
   Py_XDECREF(((PyObject *)p->__pyx_v_ngram_starts));
@@ -58480,9 +59527,9 @@ static void __pyx_tp_dealloc_3_sa___pyx_scope_struct__compute_stats(PyObject *o)
   (*Py_TYPE(o)->tp_free)(o);
 }
 
-static int __pyx_tp_traverse_3_sa___pyx_scope_struct__compute_stats(PyObject *o, visitproc v, void *a) {
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct_2_compute_stats(PyObject *o, visitproc v, void *a) {
   int e;
-  struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o;
+  struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o;
   if (p->__pyx_v_ngram) {
     e = (*v)(p->__pyx_v_ngram, a); if (e) return e;
   }
@@ -58504,8 +59551,8 @@ static int __pyx_tp_traverse_3_sa___pyx_scope_struct__compute_stats(PyObject *o,
   return 0;
 }
 
-static int __pyx_tp_clear_3_sa___pyx_scope_struct__compute_stats(PyObject *o) {
-  struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats *)o;
+static int __pyx_tp_clear_3_sa___pyx_scope_struct_2_compute_stats(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats *)o;
   PyObject* tmp;
   tmp = ((PyObject*)p->__pyx_v_ngram);
   p->__pyx_v_ngram = ((PyObject*)Py_None); Py_INCREF(Py_None);
@@ -58528,11 +59575,11 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct__compute_stats(PyObject *o) {
   return 0;
 }
 
-static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct__compute_stats[] = {
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_2_compute_stats[] = {
   {0, 0, 0, 0}
 };
 
-static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct__compute_stats = {
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_2_compute_stats = {
   0, /*nb_add*/
   0, /*nb_subtract*/
   0, /*nb_multiply*/
@@ -58590,7 +59637,7 @@ static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct__compute_stats = {
   #endif
 };
 
-static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct__compute_stats = {
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_2_compute_stats = {
   0, /*sq_length*/
   0, /*sq_concat*/
   0, /*sq_repeat*/
@@ -58603,13 +59650,13 @@ static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct__compute_stats
   0, /*sq_inplace_repeat*/
 };
 
-static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct__compute_stats = {
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_2_compute_stats = {
   0, /*mp_length*/
   0, /*mp_subscript*/
   0, /*mp_ass_subscript*/
 };
 
-static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct__compute_stats = {
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_2_compute_stats = {
   #if PY_MAJOR_VERSION < 3
   0, /*bf_getreadbuffer*/
   #endif
@@ -58630,12 +59677,12 @@ static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct__compute_stats = {
   #endif
 };
 
-static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_compute_stats = {
   PyVarObject_HEAD_INIT(0, 0)
-  __Pyx_NAMESTR("_sa.__pyx_scope_struct__compute_stats"), /*tp_name*/
-  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct__compute_stats), /*tp_basicsize*/
+  __Pyx_NAMESTR("_sa.__pyx_scope_struct_2_compute_stats"), /*tp_name*/
+  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_2_compute_stats), /*tp_basicsize*/
   0, /*tp_itemsize*/
-  __pyx_tp_dealloc_3_sa___pyx_scope_struct__compute_stats, /*tp_dealloc*/
+  __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_compute_stats, /*tp_dealloc*/
   0, /*tp_print*/
   0, /*tp_getattr*/
   0, /*tp_setattr*/
@@ -58645,24 +59692,24 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
   0, /*reserved*/
   #endif
   0, /*tp_repr*/
-  &__pyx_tp_as_number___pyx_scope_struct__compute_stats, /*tp_as_number*/
-  &__pyx_tp_as_sequence___pyx_scope_struct__compute_stats, /*tp_as_sequence*/
-  &__pyx_tp_as_mapping___pyx_scope_struct__compute_stats, /*tp_as_mapping*/
+  &__pyx_tp_as_number___pyx_scope_struct_2_compute_stats, /*tp_as_number*/
+  &__pyx_tp_as_sequence___pyx_scope_struct_2_compute_stats, /*tp_as_sequence*/
+  &__pyx_tp_as_mapping___pyx_scope_struct_2_compute_stats, /*tp_as_mapping*/
   0, /*tp_hash*/
   0, /*tp_call*/
   0, /*tp_str*/
   0, /*tp_getattro*/
   0, /*tp_setattro*/
-  &__pyx_tp_as_buffer___pyx_scope_struct__compute_stats, /*tp_as_buffer*/
+  &__pyx_tp_as_buffer___pyx_scope_struct_2_compute_stats, /*tp_as_buffer*/
   Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
   0, /*tp_doc*/
-  __pyx_tp_traverse_3_sa___pyx_scope_struct__compute_stats, /*tp_traverse*/
-  __pyx_tp_clear_3_sa___pyx_scope_struct__compute_stats, /*tp_clear*/
+  __pyx_tp_traverse_3_sa___pyx_scope_struct_2_compute_stats, /*tp_traverse*/
+  __pyx_tp_clear_3_sa___pyx_scope_struct_2_compute_stats, /*tp_clear*/
   0, /*tp_richcompare*/
   0, /*tp_weaklistoffset*/
   0, /*tp_iter*/
   0, /*tp_iternext*/
-  __pyx_methods_3_sa___pyx_scope_struct__compute_stats, /*tp_methods*/
+  __pyx_methods_3_sa___pyx_scope_struct_2_compute_stats, /*tp_methods*/
   0, /*tp_members*/
   0, /*tp_getset*/
   0, /*tp_base*/
@@ -58672,7 +59719,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
   0, /*tp_dictoffset*/
   0, /*tp_init*/
   0, /*tp_alloc*/
-  __pyx_tp_new_3_sa___pyx_scope_struct__compute_stats, /*tp_new*/
+  __pyx_tp_new_3_sa___pyx_scope_struct_2_compute_stats, /*tp_new*/
   0, /*tp_free*/
   0, /*tp_is_gc*/
   0, /*tp_bases*/
@@ -58686,32 +59733,32 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct__compute_stats = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_1___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
-  struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p;
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_3___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
-  p = ((struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o);
+  p = ((struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o);
   p->__pyx_v_self = 0;
   return o;
 }
 
-static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_1___iter__(PyObject *o) {
-  struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o;
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_3___iter__(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o;
   Py_XDECREF(((PyObject *)p->__pyx_v_self));
   (*Py_TYPE(o)->tp_free)(o);
 }
 
-static int __pyx_tp_traverse_3_sa___pyx_scope_struct_1___iter__(PyObject *o, visitproc v, void *a) {
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct_3___iter__(PyObject *o, visitproc v, void *a) {
   int e;
-  struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o;
+  struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o;
   if (p->__pyx_v_self) {
     e = (*v)(((PyObject*)p->__pyx_v_self), a); if (e) return e;
   }
   return 0;
 }
 
-static int __pyx_tp_clear_3_sa___pyx_scope_struct_1___iter__(PyObject *o) {
-  struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__ *)o;
+static int __pyx_tp_clear_3_sa___pyx_scope_struct_3___iter__(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *p = (struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__ *)o;
   PyObject* tmp;
   tmp = ((PyObject*)p->__pyx_v_self);
   p->__pyx_v_self = ((struct __pyx_obj_3_sa_Phrase *)Py_None); Py_INCREF(Py_None);
@@ -58719,11 +59766,11 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct_1___iter__(PyObject *o) {
   return 0;
 }
 
-static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_1___iter__[] = {
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_3___iter__[] = {
   {0, 0, 0, 0}
 };
 
-static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_1___iter__ = {
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_3___iter__ = {
   0, /*nb_add*/
   0, /*nb_subtract*/
   0, /*nb_multiply*/
@@ -58781,7 +59828,7 @@ static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_1___iter__ = {
   #endif
 };
 
-static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_1___iter__ = {
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_3___iter__ = {
   0, /*sq_length*/
   0, /*sq_concat*/
   0, /*sq_repeat*/
@@ -58794,13 +59841,13 @@ static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_1___iter__ = {
   0, /*sq_inplace_repeat*/
 };
 
-static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_1___iter__ = {
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_3___iter__ = {
   0, /*mp_length*/
   0, /*mp_subscript*/
   0, /*mp_ass_subscript*/
 };
 
-static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_1___iter__ = {
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_3___iter__ = {
   #if PY_MAJOR_VERSION < 3
   0, /*bf_getreadbuffer*/
   #endif
@@ -58821,12 +59868,12 @@ static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_1___iter__ = {
   #endif
 };
 
-static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_3___iter__ = {
   PyVarObject_HEAD_INIT(0, 0)
-  __Pyx_NAMESTR("_sa.__pyx_scope_struct_1___iter__"), /*tp_name*/
-  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_1___iter__), /*tp_basicsize*/
+  __Pyx_NAMESTR("_sa.__pyx_scope_struct_3___iter__"), /*tp_name*/
+  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_3___iter__), /*tp_basicsize*/
   0, /*tp_itemsize*/
-  __pyx_tp_dealloc_3_sa___pyx_scope_struct_1___iter__, /*tp_dealloc*/
+  __pyx_tp_dealloc_3_sa___pyx_scope_struct_3___iter__, /*tp_dealloc*/
   0, /*tp_print*/
   0, /*tp_getattr*/
   0, /*tp_setattr*/
@@ -58836,24 +59883,24 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
   0, /*reserved*/
   #endif
   0, /*tp_repr*/
-  &__pyx_tp_as_number___pyx_scope_struct_1___iter__, /*tp_as_number*/
-  &__pyx_tp_as_sequence___pyx_scope_struct_1___iter__, /*tp_as_sequence*/
-  &__pyx_tp_as_mapping___pyx_scope_struct_1___iter__, /*tp_as_mapping*/
+  &__pyx_tp_as_number___pyx_scope_struct_3___iter__, /*tp_as_number*/
+  &__pyx_tp_as_sequence___pyx_scope_struct_3___iter__, /*tp_as_sequence*/
+  &__pyx_tp_as_mapping___pyx_scope_struct_3___iter__, /*tp_as_mapping*/
   0, /*tp_hash*/
   0, /*tp_call*/
   0, /*tp_str*/
   0, /*tp_getattro*/
   0, /*tp_setattro*/
-  &__pyx_tp_as_buffer___pyx_scope_struct_1___iter__, /*tp_as_buffer*/
+  &__pyx_tp_as_buffer___pyx_scope_struct_3___iter__, /*tp_as_buffer*/
   Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
   0, /*tp_doc*/
-  __pyx_tp_traverse_3_sa___pyx_scope_struct_1___iter__, /*tp_traverse*/
-  __pyx_tp_clear_3_sa___pyx_scope_struct_1___iter__, /*tp_clear*/
+  __pyx_tp_traverse_3_sa___pyx_scope_struct_3___iter__, /*tp_traverse*/
+  __pyx_tp_clear_3_sa___pyx_scope_struct_3___iter__, /*tp_clear*/
   0, /*tp_richcompare*/
   0, /*tp_weaklistoffset*/
   0, /*tp_iter*/
   0, /*tp_iternext*/
-  __pyx_methods_3_sa___pyx_scope_struct_1___iter__, /*tp_methods*/
+  __pyx_methods_3_sa___pyx_scope_struct_3___iter__, /*tp_methods*/
   0, /*tp_members*/
   0, /*tp_getset*/
   0, /*tp_base*/
@@ -58863,7 +59910,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
   0, /*tp_dictoffset*/
   0, /*tp_init*/
   0, /*tp_alloc*/
-  __pyx_tp_new_3_sa___pyx_scope_struct_1___iter__, /*tp_new*/
+  __pyx_tp_new_3_sa___pyx_scope_struct_3___iter__, /*tp_new*/
   0, /*tp_free*/
   0, /*tp_is_gc*/
   0, /*tp_bases*/
@@ -58877,11 +59924,11 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_1___iter__ = {
   #endif
 };
 
-static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_input(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
-  struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p;
+static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_4_input(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p;
   PyObject *o = (*t->tp_alloc)(t, 0);
   if (!o) return 0;
-  p = ((struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o);
+  p = ((struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o);
   p->__pyx_v_alignment = 0;
   p->__pyx_v_als = 0;
   p->__pyx_v_alslist = 0;
@@ -58935,8 +59982,8 @@ static PyObject *__pyx_tp_new_3_sa___pyx_scope_struct_2_input(PyTypeObject *t, C
   return o;
 }
 
-static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_input(PyObject *o) {
-  struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o;
+static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_4_input(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o;
   Py_XDECREF(p->__pyx_v_alignment);
   Py_XDECREF(p->__pyx_v_als);
   Py_XDECREF(p->__pyx_v_alslist);
@@ -58990,9 +60037,9 @@ static void __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_input(PyObject *o) {
   (*Py_TYPE(o)->tp_free)(o);
 }
 
-static int __pyx_tp_traverse_3_sa___pyx_scope_struct_2_input(PyObject *o, visitproc v, void *a) {
+static int __pyx_tp_traverse_3_sa___pyx_scope_struct_4_input(PyObject *o, visitproc v, void *a) {
   int e;
-  struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o;
+  struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o;
   if (p->__pyx_v_alignment) {
     e = (*v)(p->__pyx_v_alignment, a); if (e) return e;
   }
@@ -59146,8 +60193,8 @@ static int __pyx_tp_traverse_3_sa___pyx_scope_struct_2_input(PyObject *o, visitp
   return 0;
 }
 
-static int __pyx_tp_clear_3_sa___pyx_scope_struct_2_input(PyObject *o) {
-  struct __pyx_obj_3_sa___pyx_scope_struct_2_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_2_input *)o;
+static int __pyx_tp_clear_3_sa___pyx_scope_struct_4_input(PyObject *o) {
+  struct __pyx_obj_3_sa___pyx_scope_struct_4_input *p = (struct __pyx_obj_3_sa___pyx_scope_struct_4_input *)o;
   PyObject* tmp;
   tmp = ((PyObject*)p->__pyx_v_alignment);
   p->__pyx_v_alignment = Py_None; Py_INCREF(Py_None);
@@ -59302,11 +60349,11 @@ static int __pyx_tp_clear_3_sa___pyx_scope_struct_2_input(PyObject *o) {
   return 0;
 }
 
-static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_2_input[] = {
+static PyMethodDef __pyx_methods_3_sa___pyx_scope_struct_4_input[] = {
   {0, 0, 0, 0}
 };
 
-static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_2_input = {
+static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_4_input = {
   0, /*nb_add*/
   0, /*nb_subtract*/
   0, /*nb_multiply*/
@@ -59364,7 +60411,7 @@ static PyNumberMethods __pyx_tp_as_number___pyx_scope_struct_2_input = {
   #endif
 };
 
-static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_2_input = {
+static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_4_input = {
   0, /*sq_length*/
   0, /*sq_concat*/
   0, /*sq_repeat*/
@@ -59377,13 +60424,13 @@ static PySequenceMethods __pyx_tp_as_sequence___pyx_scope_struct_2_input = {
   0, /*sq_inplace_repeat*/
 };
 
-static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_2_input = {
+static PyMappingMethods __pyx_tp_as_mapping___pyx_scope_struct_4_input = {
   0, /*mp_length*/
   0, /*mp_subscript*/
   0, /*mp_ass_subscript*/
 };
 
-static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_2_input = {
+static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_4_input = {
   #if PY_MAJOR_VERSION < 3
   0, /*bf_getreadbuffer*/
   #endif
@@ -59404,12 +60451,12 @@ static PyBufferProcs __pyx_tp_as_buffer___pyx_scope_struct_2_input = {
   #endif
 };
 
-static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_input = {
+static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_4_input = {
   PyVarObject_HEAD_INIT(0, 0)
-  __Pyx_NAMESTR("_sa.__pyx_scope_struct_2_input"), /*tp_name*/
-  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_2_input), /*tp_basicsize*/
+  __Pyx_NAMESTR("_sa.__pyx_scope_struct_4_input"), /*tp_name*/
+  sizeof(struct __pyx_obj_3_sa___pyx_scope_struct_4_input), /*tp_basicsize*/
   0, /*tp_itemsize*/
-  __pyx_tp_dealloc_3_sa___pyx_scope_struct_2_input, /*tp_dealloc*/
+  __pyx_tp_dealloc_3_sa___pyx_scope_struct_4_input, /*tp_dealloc*/
   0, /*tp_print*/
   0, /*tp_getattr*/
   0, /*tp_setattr*/
@@ -59419,24 +60466,24 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_input = {
   0, /*reserved*/
   #endif
   0, /*tp_repr*/
-  &__pyx_tp_as_number___pyx_scope_struct_2_input, /*tp_as_number*/
-  &__pyx_tp_as_sequence___pyx_scope_struct_2_input, /*tp_as_sequence*/
-  &__pyx_tp_as_mapping___pyx_scope_struct_2_input, /*tp_as_mapping*/
+  &__pyx_tp_as_number___pyx_scope_struct_4_input, /*tp_as_number*/
+  &__pyx_tp_as_sequence___pyx_scope_struct_4_input, /*tp_as_sequence*/
+  &__pyx_tp_as_mapping___pyx_scope_struct_4_input, /*tp_as_mapping*/
   0, /*tp_hash*/
   0, /*tp_call*/
   0, /*tp_str*/
   0, /*tp_getattro*/
   0, /*tp_setattro*/
-  &__pyx_tp_as_buffer___pyx_scope_struct_2_input, /*tp_as_buffer*/
+  &__pyx_tp_as_buffer___pyx_scope_struct_4_input, /*tp_as_buffer*/
   Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
   0, /*tp_doc*/
-  __pyx_tp_traverse_3_sa___pyx_scope_struct_2_input, /*tp_traverse*/
-  __pyx_tp_clear_3_sa___pyx_scope_struct_2_input, /*tp_clear*/
+  __pyx_tp_traverse_3_sa___pyx_scope_struct_4_input, /*tp_traverse*/
+  __pyx_tp_clear_3_sa___pyx_scope_struct_4_input, /*tp_clear*/
   0, /*tp_richcompare*/
   0, /*tp_weaklistoffset*/
   0, /*tp_iter*/
   0, /*tp_iternext*/
-  __pyx_methods_3_sa___pyx_scope_struct_2_input, /*tp_methods*/
+  __pyx_methods_3_sa___pyx_scope_struct_4_input, /*tp_methods*/
   0, /*tp_members*/
   0, /*tp_getset*/
   0, /*tp_base*/
@@ -59446,7 +60493,7 @@ static PyTypeObject __pyx_type_3_sa___pyx_scope_struct_2_input = {
   0, /*tp_dictoffset*/
   0, /*tp_init*/
   0, /*tp_alloc*/
-  __pyx_tp_new_3_sa___pyx_scope_struct_2_input, /*tp_new*/
+  __pyx_tp_new_3_sa___pyx_scope_struct_4_input, /*tp_new*/
   0, /*tp_free*/
   0, /*tp_is_gc*/
   0, /*tp_bases*/
@@ -59480,11 +60527,11 @@ static struct PyModuleDef __pyx_moduledef = {
 
 static __Pyx_StringTabEntry __pyx_string_tab[] = {
   {&__pyx_kp_s_1, __pyx_k_1, sizeof(__pyx_k_1), 0, 0, 1, 0},
-  {&__pyx_n_s_101, __pyx_k_101, sizeof(__pyx_k_101), 0, 0, 1, 1},
-  {&__pyx_n_s_102, __pyx_k_102, sizeof(__pyx_k_102), 0, 0, 1, 1},
-  {&__pyx_kp_s_104, __pyx_k_104, sizeof(__pyx_k_104), 0, 0, 1, 0},
+  {&__pyx_kp_s_100, __pyx_k_100, sizeof(__pyx_k_100), 0, 0, 1, 0},
+  {&__pyx_kp_s_101, __pyx_k_101, sizeof(__pyx_k_101), 0, 0, 1, 0},
+  {&__pyx_n_s_103, __pyx_k_103, sizeof(__pyx_k_103), 0, 0, 1, 1},
+  {&__pyx_n_s_104, __pyx_k_104, sizeof(__pyx_k_104), 0, 0, 1, 1},
   {&__pyx_kp_s_106, __pyx_k_106, sizeof(__pyx_k_106), 0, 0, 1, 0},
-  {&__pyx_kp_s_107, __pyx_k_107, sizeof(__pyx_k_107), 0, 0, 1, 0},
   {&__pyx_kp_s_108, __pyx_k_108, sizeof(__pyx_k_108), 0, 0, 1, 0},
   {&__pyx_kp_s_109, __pyx_k_109, sizeof(__pyx_k_109), 0, 0, 1, 0},
   {&__pyx_kp_s_110, __pyx_k_110, sizeof(__pyx_k_110), 0, 0, 1, 0},
@@ -59494,12 +60541,12 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
   {&__pyx_kp_s_114, __pyx_k_114, sizeof(__pyx_k_114), 0, 0, 1, 0},
   {&__pyx_kp_s_115, __pyx_k_115, sizeof(__pyx_k_115), 0, 0, 1, 0},
   {&__pyx_kp_s_116, __pyx_k_116, sizeof(__pyx_k_116), 0, 0, 1, 0},
-  {&__pyx_n_s_117, __pyx_k_117, sizeof(__pyx_k_117), 0, 0, 1, 1},
+  {&__pyx_kp_s_117, __pyx_k_117, sizeof(__pyx_k_117), 0, 0, 1, 0},
   {&__pyx_kp_s_118, __pyx_k_118, sizeof(__pyx_k_118), 0, 0, 1, 0},
-  {&__pyx_kp_s_119, __pyx_k_119, sizeof(__pyx_k_119), 0, 0, 1, 0},
-  {&__pyx_n_s_121, __pyx_k_121, sizeof(__pyx_k_121), 0, 0, 1, 1},
-  {&__pyx_kp_s_122, __pyx_k_122, sizeof(__pyx_k_122), 0, 0, 1, 0},
-  {&__pyx_kp_s_123, __pyx_k_123, sizeof(__pyx_k_123), 0, 0, 1, 0},
+  {&__pyx_n_s_119, __pyx_k_119, sizeof(__pyx_k_119), 0, 0, 1, 1},
+  {&__pyx_kp_s_120, __pyx_k_120, sizeof(__pyx_k_120), 0, 0, 1, 0},
+  {&__pyx_kp_s_121, __pyx_k_121, sizeof(__pyx_k_121), 0, 0, 1, 0},
+  {&__pyx_n_s_123, __pyx_k_123, sizeof(__pyx_k_123), 0, 0, 1, 1},
   {&__pyx_kp_s_124, __pyx_k_124, sizeof(__pyx_k_124), 0, 0, 1, 0},
   {&__pyx_kp_s_125, __pyx_k_125, sizeof(__pyx_k_125), 0, 0, 1, 0},
   {&__pyx_kp_s_126, __pyx_k_126, sizeof(__pyx_k_126), 0, 0, 1, 0},
@@ -59509,49 +60556,49 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = {
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   {&__pyx_kp_s_130, __pyx_k_130, sizeof(__pyx_k_130), 0, 0, 1, 0},
   {&__pyx_kp_s_131, __pyx_k_131, sizeof(__pyx_k_131), 0, 0, 1, 0},
-  {&__pyx_kp_s_134, __pyx_k_134, sizeof(__pyx_k_134), 0, 0, 1, 0},
-  {&__pyx_kp_s_135, __pyx_k_135, sizeof(__pyx_k_135), 0, 0, 1, 0},
-  {&__pyx_kp_s_139, __pyx_k_139, sizeof(__pyx_k_139), 0, 0, 1, 0},
+  {&__pyx_kp_s_132, __pyx_k_132, sizeof(__pyx_k_132), 0, 0, 1, 0},
+  {&__pyx_kp_s_133, __pyx_k_133, sizeof(__pyx_k_133), 0, 0, 1, 0},
+  {&__pyx_kp_s_136, __pyx_k_136, sizeof(__pyx_k_136), 0, 0, 1, 0},
+  {&__pyx_kp_s_137, __pyx_k_137, sizeof(__pyx_k_137), 0, 0, 1, 0},
   {&__pyx_kp_s_14, __pyx_k_14, sizeof(__pyx_k_14), 0, 0, 1, 0},
-  {&__pyx_kp_s_140, __pyx_k_140, sizeof(__pyx_k_140), 0, 0, 1, 0},
+  {&__pyx_kp_s_141, __pyx_k_141, sizeof(__pyx_k_141), 0, 0, 1, 0},
+  {&__pyx_kp_s_142, __pyx_k_142, sizeof(__pyx_k_142), 0, 0, 1, 0},
   {&__pyx_kp_s_18, __pyx_k_18, sizeof(__pyx_k_18), 0, 0, 1, 0},
   {&__pyx_kp_s_2, __pyx_k_2, sizeof(__pyx_k_2), 0, 0, 1, 0},
-  {&__pyx_kp_s_22, __pyx_k_22, sizeof(__pyx_k_22), 0, 0, 1, 0},
-  {&__pyx_n_s_24, __pyx_k_24, sizeof(__pyx_k_24), 0, 0, 1, 1},
-  {&__pyx_kp_s_28, __pyx_k_28, sizeof(__pyx_k_28), 0, 0, 1, 0},
+  {&__pyx_kp_s_21, __pyx_k_21, sizeof(__pyx_k_21), 0, 0, 1, 0},
+  {&__pyx_kp_s_25, __pyx_k_25, sizeof(__pyx_k_25), 0, 0, 1, 0},
+  {&__pyx_n_s_27, __pyx_k_27, sizeof(__pyx_k_27), 0, 0, 1, 1},
   {&__pyx_kp_s_3, __pyx_k_3, sizeof(__pyx_k_3), 0, 0, 1, 0},
-  {&__pyx_kp_s_32, __pyx_k_32, sizeof(__pyx_k_32), 0, 0, 1, 0},
-  {&__pyx_kp_s_39, __pyx_k_39, sizeof(__pyx_k_39), 0, 0, 1, 0},
+  {&__pyx_kp_s_31, __pyx_k_31, sizeof(__pyx_k_31), 0, 0, 1, 0},
+  {&__pyx_kp_s_35, __pyx_k_35, sizeof(__pyx_k_35), 0, 0, 1, 0},
   {&__pyx_kp_s_4, __pyx_k_4, sizeof(__pyx_k_4), 0, 0, 1, 0},
   {&__pyx_kp_s_42, __pyx_k_42, sizeof(__pyx_k_42), 0, 0, 1, 0},
-  {&__pyx_kp_s_43, __pyx_k_43, sizeof(__pyx_k_43), 0, 0, 1, 0},
   {&__pyx_kp_s_45, __pyx_k_45, sizeof(__pyx_k_45), 0, 0, 1, 0},
-  {&__pyx_kp_s_47, __pyx_k_47, sizeof(__pyx_k_47), 0, 0, 1, 0},
-  {&__pyx_kp_s_49, __pyx_k_49, sizeof(__pyx_k_49), 0, 0, 1, 0},
+  {&__pyx_kp_s_46, __pyx_k_46, sizeof(__pyx_k_46), 0, 0, 1, 0},
+  {&__pyx_kp_s_48, __pyx_k_48, sizeof(__pyx_k_48), 0, 0, 1, 0},
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-  {&__pyx_kp_s_55, __pyx_k_55, sizeof(__pyx_k_55), 0, 0, 1, 0},
+  {&__pyx_kp_s_50, __pyx_k_50, sizeof(__pyx_k_50), 0, 0, 1, 0},
+  {&__pyx_kp_s_52, __pyx_k_52, sizeof(__pyx_k_52), 0, 0, 1, 0},
   {&__pyx_kp_s_56, __pyx_k_56, sizeof(__pyx_k_56), 0, 0, 1, 0},
-  {&__pyx_kp_s_57, __pyx_k_57, sizeof(__pyx_k_57), 0, 0, 1, 0},
+  {&__pyx_kp_s_58, __pyx_k_58, sizeof(__pyx_k_58), 0, 0, 1, 0},
   {&__pyx_kp_s_59, __pyx_k_59, sizeof(__pyx_k_59), 0, 0, 1, 0},
   {&__pyx_kp_s_6, __pyx_k_6, sizeof(__pyx_k_6), 0, 0, 1, 0},
-  {&__pyx_kp_s_61, __pyx_k_61, sizeof(__pyx_k_61), 0, 0, 1, 0},
+  {&__pyx_kp_s_60, __pyx_k_60, sizeof(__pyx_k_60), 0, 0, 1, 0},
   {&__pyx_kp_s_62, __pyx_k_62, sizeof(__pyx_k_62), 0, 0, 1, 0},
-  {&__pyx_kp_s_63, __pyx_k_63, sizeof(__pyx_k_63), 0, 0, 1, 0},
   {&__pyx_kp_s_64, __pyx_k_64, sizeof(__pyx_k_64), 0, 0, 1, 0},
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-  {&__pyx_n_s_68, __pyx_k_68, sizeof(__pyx_k_68), 0, 0, 1, 1},
-  {&__pyx_n_s_69, __pyx_k_69, sizeof(__pyx_k_69), 0, 0, 1, 1},
+  {&__pyx_kp_s_68, __pyx_k_68, sizeof(__pyx_k_68), 0, 0, 1, 0},
+  {&__pyx_kp_s_69, __pyx_k_69, sizeof(__pyx_k_69), 0, 0, 1, 0},
   {&__pyx_kp_s_7, __pyx_k_7, sizeof(__pyx_k_7), 0, 0, 1, 0},
-  {&__pyx_kp_s_70, __pyx_k_70, sizeof(__pyx_k_70), 0, 0, 1, 0},
+  {&__pyx_n_s_70, __pyx_k_70, sizeof(__pyx_k_70), 0, 0, 1, 1},
+  {&__pyx_n_s_71, __pyx_k_71, sizeof(__pyx_k_71), 0, 0, 1, 1},
   {&__pyx_kp_s_72, __pyx_k_72, sizeof(__pyx_k_72), 0, 0, 1, 0},
   {&__pyx_kp_s_74, __pyx_k_74, sizeof(__pyx_k_74), 0, 0, 1, 0},
   {&__pyx_kp_s_76, __pyx_k_76, sizeof(__pyx_k_76), 0, 0, 1, 0},
+  {&__pyx_kp_s_78, __pyx_k_78, sizeof(__pyx_k_78), 0, 0, 1, 0},
   {&__pyx_kp_s_8, __pyx_k_8, sizeof(__pyx_k_8), 0, 0, 1, 0},
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-  {&__pyx_kp_s_82, __pyx_k_82, sizeof(__pyx_k_82), 0, 0, 1, 0},
   {&__pyx_kp_s_83, __pyx_k_83, sizeof(__pyx_k_83), 0, 0, 1, 0},
   {&__pyx_kp_s_84, __pyx_k_84, sizeof(__pyx_k_84), 0, 0, 1, 0},
   {&__pyx_kp_s_85, __pyx_k_85, sizeof(__pyx_k_85), 0, 0, 1, 0},
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   {&__pyx_kp_s_90, __pyx_k_90, sizeof(__pyx_k_90), 0, 0, 1, 0},
+  {&__pyx_kp_s_91, __pyx_k_91, sizeof(__pyx_k_91), 0, 0, 1, 0},
   {&__pyx_kp_s_92, __pyx_k_92, sizeof(__pyx_k_92), 0, 0, 1, 0},
-  {&__pyx_kp_s_93, __pyx_k_93, sizeof(__pyx_k_93), 0, 0, 1, 0},
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-  {&__pyx_kp_s_99, __pyx_k_99, sizeof(__pyx_k_99), 0, 0, 1, 0},
+  {&__pyx_kp_s_94, __pyx_k_94, sizeof(__pyx_k_94), 0, 0, 1, 0},
+  {&__pyx_kp_s_95, __pyx_k_95, sizeof(__pyx_k_95), 0, 0, 1, 0},
   {&__pyx_kp_s__0, __pyx_k__0, sizeof(__pyx_k__0), 0, 0, 1, 0},
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   {&__pyx_n_s__read_binary, __pyx_k__read_binary, sizeof(__pyx_k__read_binary), 0, 0, 1, 1},
+  {&__pyx_n_s__read_bitext, __pyx_k__read_bitext, sizeof(__pyx_k__read_bitext), 0, 0, 1, 1},
   {&__pyx_n_s__read_text, __pyx_k__read_text, sizeof(__pyx_k__read_text), 0, 0, 1, 1},
+  {&__pyx_n_s__read_text_data, __pyx_k__read_text_data, sizeof(__pyx_k__read_text_data), 0, 0, 1, 1},
   {&__pyx_n_s__res, __pyx_k__res, sizeof(__pyx_k__res), 0, 0, 1, 1},
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   {&__pyx_n_s__shortest, __pyx_k__shortest, sizeof(__pyx_k__shortest), 0, 0, 1, 1},
+  {&__pyx_n_s__side, __pyx_k__side, sizeof(__pyx_k__side), 0, 0, 1, 1},
   {&__pyx_n_s__size, __pyx_k__size, sizeof(__pyx_k__size), 0, 0, 1, 1},
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   {&__pyx_n_s__sorted, __pyx_k__sorted, sizeof(__pyx_k__sorted), 0, 0, 1, 1},
+  {&__pyx_n_s__source, __pyx_k__source, sizeof(__pyx_k__source), 0, 0, 1, 1},
   {&__pyx_n_s__spanlen, __pyx_k__spanlen, sizeof(__pyx_k__spanlen), 0, 0, 1, 1},
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+  __pyx_builtin_enumerate = __Pyx_GetName(__pyx_b, __pyx_n_s__enumerate); if (!__pyx_builtin_enumerate) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 78; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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@@ -59802,28 +60853,28 @@ static int __Pyx_InitCachedConstants(void) {
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   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_12));
 
-  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":62
+  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":65
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+  __pyx_k_tuple_15 = PyTuple_New(1); if (unlikely(!__pyx_k_tuple_15)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 65; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
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-  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":57
+  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":60
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+  __pyx_k_tuple_16 = PyTuple_New(3); if (unlikely(!__pyx_k_tuple_16)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 60; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_16));
 
-  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":66
+  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":68
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+ *             self.read_text_data(fp)
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+  __pyx_k_tuple_17 = PyTuple_New(3); if (unlikely(!__pyx_k_tuple_17)) {__pyx_filename = __pyx_f[3]; __pyx_lineno = 68; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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   __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_17));
 
-  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":133
+  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":73
+ *     def read_bitext(self, char* filename, int side):
+ *         with gzip_or_text(filename) as fp:
+ *             data = (line.split(' ||| ')[side] for line in fp)             # <<<<<<<<<<<<<<
+ *             self.read_text_data(data)
+ * 
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+  __Pyx_GOTREF(__pyx_k_tuple_19);
+  __Pyx_INCREF(((PyObject *)__pyx_kp_s_18));
+  PyTuple_SET_ITEM(__pyx_k_tuple_19, 0, ((PyObject *)__pyx_kp_s_18));
+  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_18));
+  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_19));
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+  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":72
+ * 
+ *     def read_bitext(self, char* filename, int side):
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+  __Pyx_GOTREF(__pyx_k_tuple_20);
+  __Pyx_INCREF(Py_None);
+  PyTuple_SET_ITEM(__pyx_k_tuple_20, 0, Py_None);
+  __Pyx_GIVEREF(Py_None);
+  __Pyx_INCREF(Py_None);
+  PyTuple_SET_ITEM(__pyx_k_tuple_20, 1, Py_None);
+  __Pyx_GIVEREF(Py_None);
+  __Pyx_INCREF(Py_None);
+  PyTuple_SET_ITEM(__pyx_k_tuple_20, 2, Py_None);
+  __Pyx_GIVEREF(Py_None);
+  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_20));
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+  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":145
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-  __Pyx_GOTREF(__pyx_k_tuple_19);
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   __Pyx_INCREF(((PyObject *)__pyx_kp_s_14));
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   __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_14));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_19));
+  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_22));
 
-  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":136
+  /* "/Users/vchahun/Sandbox/cdec/python/src/sa/data_array.pxi":148
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_43));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_57));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_58));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_59));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_70));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_71));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_72));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_73));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_74));
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-  __Pyx_GOTREF(__pyx_k_tuple_77);
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-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_91));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_99));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_100));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_104));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_105));
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-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_135));
-  __Pyx_GIVEREF(((PyObject *)__pyx_k_tuple_136));
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+  __Pyx_GOTREF(__pyx_k_tuple_138);
+  __Pyx_INCREF(((PyObject *)__pyx_kp_s_137));
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+  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_137));
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   /*--- Variable import code ---*/
   /*--- Function import code ---*/
@@ -60844,7 +61933,7 @@ PyMODINIT_FUNC PyInit__sa(void)
   __pyx_t_2 = PyObject_GetAttr(__pyx_t_1, __pyx_n_s__getLogger); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
   __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
-  __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_136), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+  __pyx_t_1 = PyObject_Call(__pyx_t_2, ((PyObject *)__pyx_k_tuple_138), NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
   __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
   if (PyObject_SetAttr(__pyx_m, __pyx_n_s__logger, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
@@ -60859,7 +61948,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_t_1 = __Pyx_PyBool_FromLong(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[5]; __pyx_lineno = 54; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_1);
-  __pyx_k_38 = __pyx_t_1;
+  __pyx_k_41 = __pyx_t_1;
   __Pyx_GIVEREF(__pyx_t_1);
   __pyx_t_1 = 0;
 
@@ -60986,9 +62075,9 @@ PyMODINIT_FUNC PyInit__sa(void)
   __Pyx_GOTREF(__pyx_t_2);
   __pyx_t_3 = PyTuple_New(2); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 16; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_3);
-  __Pyx_INCREF(((PyObject *)__pyx_kp_s_140));
-  PyTuple_SET_ITEM(__pyx_t_3, 0, ((PyObject *)__pyx_kp_s_140));
-  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_140));
+  __Pyx_INCREF(((PyObject *)__pyx_kp_s_142));
+  PyTuple_SET_ITEM(__pyx_t_3, 0, ((PyObject *)__pyx_kp_s_142));
+  __Pyx_GIVEREF(((PyObject *)__pyx_kp_s_142));
   PyTuple_SET_ITEM(__pyx_t_3, 1, __pyx_t_2);
   __Pyx_GIVEREF(__pyx_t_2);
   __pyx_t_2 = 0;
@@ -61009,7 +62098,7 @@ PyMODINIT_FUNC PyInit__sa(void)
  */
   __pyx_t_2 = __Pyx_PyBool_FromLong(0); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[8]; __pyx_lineno = 39; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
   __Pyx_GOTREF(__pyx_t_2);
-  __pyx_k_97 = __pyx_t_2;
+  __pyx_k_99 = __pyx_t_2;
   __Pyx_GIVEREF(__pyx_t_2);
   __pyx_t_2 = 0;
 
@@ -61451,6 +62540,10 @@ bad:
     return -1;
 }
 
+static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname) {
+    PyErr_Format(PyExc_NameError, "free variable '%s' referenced before assignment in enclosing scope", varname);
+}
+
 static CYTHON_INLINE long __Pyx_div_long(long a, long b) {
     long q = a / b;
     long r = a - q*b;
@@ -61836,6 +62929,86 @@ bad:
     return module;
 }
 
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
+#if CYTHON_COMPILING_IN_PYPY
+    return PyObject_RichCompareBool(s1, s2, equals);
+#else
+    if (s1 == s2) {
+        return (equals == Py_EQ);
+    } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
+        if (PyBytes_GET_SIZE(s1) != PyBytes_GET_SIZE(s2)) {
+            return (equals == Py_NE);
+        } else if (PyBytes_GET_SIZE(s1) == 1) {
+            if (equals == Py_EQ)
+                return (PyBytes_AS_STRING(s1)[0] == PyBytes_AS_STRING(s2)[0]);
+            else
+                return (PyBytes_AS_STRING(s1)[0] != PyBytes_AS_STRING(s2)[0]);
+        } else {
+            int result = memcmp(PyBytes_AS_STRING(s1), PyBytes_AS_STRING(s2), (size_t)PyBytes_GET_SIZE(s1));
+            return (equals == Py_EQ) ? (result == 0) : (result != 0);
+        }
+    } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
+        return (equals == Py_NE);
+    } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
+        return (equals == Py_NE);
+    } else {
+        int result;
+        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+        if (!py_result)
+            return -1;
+        result = __Pyx_PyObject_IsTrue(py_result);
+        Py_DECREF(py_result);
+        return result;
+    }
+#endif
+}
+
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
+#if CYTHON_COMPILING_IN_PYPY
+    return PyObject_RichCompareBool(s1, s2, equals);
+#else
+    if (s1 == s2) {
+        return (equals == Py_EQ);
+    } else if (PyUnicode_CheckExact(s1) & PyUnicode_CheckExact(s2)) {
+        #if CYTHON_PEP393_ENABLED
+        if ((PyUnicode_READY(s1) < 0) || (PyUnicode_READY(s2) < 0))
+            return -1;
+        if (PyUnicode_GET_LENGTH(s1) != PyUnicode_GET_LENGTH(s2)) {
+            return (equals == Py_NE);
+        } else if (PyUnicode_GET_LENGTH(s1) == 1) {
+            Py_UCS4 ch1 = PyUnicode_READ_CHAR(s1, 0);
+            Py_UCS4 ch2 = PyUnicode_READ_CHAR(s2, 0);
+            return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+        #else
+        if (PyUnicode_GET_SIZE(s1) != PyUnicode_GET_SIZE(s2)) {
+            return (equals == Py_NE);
+        } else if (PyUnicode_GET_SIZE(s1) == 1) {
+            Py_UNICODE ch1 = PyUnicode_AS_UNICODE(s1)[0];
+            Py_UNICODE ch2 = PyUnicode_AS_UNICODE(s2)[0];
+            return (equals == Py_EQ) ? (ch1 == ch2) : (ch1 != ch2);
+        #endif
+        } else {
+            int result = PyUnicode_Compare(s1, s2);
+            if ((result == -1) && unlikely(PyErr_Occurred()))
+                return -1;
+            return (equals == Py_EQ) ? (result == 0) : (result != 0);
+        }
+    } else if ((s1 == Py_None) & PyUnicode_CheckExact(s2)) {
+        return (equals == Py_NE);
+    } else if ((s2 == Py_None) & PyUnicode_CheckExact(s1)) {
+        return (equals == Py_NE);
+    } else {
+        int result;
+        PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
+        if (!py_result)
+            return -1;
+        result = __Pyx_PyObject_IsTrue(py_result);
+        Py_DECREF(py_result);
+        return result;
+    }
+#endif
+}
+
 static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject* x) {
     const unsigned char neg_one = (unsigned char)-1, const_zero = 0;
     const int is_unsigned = neg_one > const_zero;
diff --git a/python/src/sa/data_array.pxi b/python/src/sa/data_array.pxi
index 1c044694..7a102a7e 100644
--- a/python/src/sa/data_array.pxi
+++ b/python/src/sa/data_array.pxi
@@ -14,7 +14,7 @@ cdef class DataArray:
     cdef IntList sent_index
     cdef bint use_sent_id
 
-    def __cinit__(self, from_binary=None, from_text=None, bint use_sent_id=False):
+    def __cinit__(self, from_binary=None, from_text=None, side=None, bint use_sent_id=False):
         self.word2id = {"END_OF_FILE":0, "END_OF_LINE":1}
         self.id2word = ["END_OF_FILE", "END_OF_LINE"]
         self.data = IntList(1000,1000)
@@ -24,7 +24,10 @@ cdef class DataArray:
         if from_binary:
             self.read_binary(from_binary)
         elif from_text:
-            self.read_text(from_text)
+            if side:
+                self.read_bitext(from_text, (0 if side == 'source' else 1))
+            else:
+                self.read_text(from_text)
 
     def __len__(self):
         return len(self.data)
@@ -62,21 +65,30 @@ cdef class DataArray:
                     f.write("\n")
 
     def read_text(self, char* filename):
-        cdef int word_count = 0
         with gzip_or_text(filename) as fp:
-            for line_num, line in enumerate(fp):
-                self.sent_index.append(word_count)
-                for word in line.split():
-                    self.data.append(self.get_id(word))
-                    if self.use_sent_id:
-                        self.sent_id.append(line_num)
-                    word_count = word_count + 1
-                self.data.append(1)
+            self.read_text_data(fp)
+
+    def read_bitext(self, char* filename, int side):
+        with gzip_or_text(filename) as fp:
+            data = (line.split(' ||| ')[side] for line in fp)
+            self.read_text_data(data)
+
+    def read_text_data(self, data):
+        cdef int word_count = 0
+        for line_num, line in enumerate(data):
+            self.sent_index.append(word_count)
+            for word in line.split():
+                self.data.append(self.get_id(word))
                 if self.use_sent_id:
                     self.sent_id.append(line_num)
                 word_count = word_count + 1
-            self.data.append(0)
-            self.sent_index.append(word_count)
+            self.data.append(1)
+            if self.use_sent_id:
+                self.sent_id.append(line_num)
+            word_count = word_count + 1
+        self.data.append(0)
+        self.sent_index.append(word_count)
+
 
     def read_binary(self, char* filename):
         cdef FILE* f
diff --git a/python/src/sa/suffix_array.pxi b/python/src/sa/suffix_array.pxi
index 20e6261d..d86e8ea6 100644
--- a/python/src/sa/suffix_array.pxi
+++ b/python/src/sa/suffix_array.pxi
@@ -8,14 +8,14 @@ cdef class SuffixArray:
     cdef IntList sa
     cdef IntList ha
 
-    def __cinit__(self, from_binary=None, from_text=None):
+    def __cinit__(self, from_binary=None, from_text=None, side=None):
         self.darray = DataArray()
         self.sa = IntList()
         self.ha = IntList()
         if from_binary:
             self.read_binary(from_binary)
         elif from_text:
-            self.read_text(from_text)
+            self.read_text(from_text, side)
 
     def __getitem__(self, i):
         return self.sa.arr[i]
@@ -29,13 +29,13 @@ cdef class SuffixArray:
     def getSentPos(self, loc):
         return self.darray.getSentPos(loc)
 
-    def read_text(self, char* filename):
+    def read_text(self, filename, side):
         '''Constructs suffix array using the algorithm
         of Larsson & Sadahkane (1999)'''
         cdef int V, N, i, j, h, a_i, n, current_run, skip
         cdef IntList isa, word_count
 
-        self.darray = DataArray(from_text=filename, use_sent_id=True)
+        self.darray = DataArray(from_text=filename, side=side, use_sent_id=True)
         N = len(self.darray)
         V = len(self.darray.id2word)