1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
|
#!/usr/bin/perl -w
use strict;
my $SCRIPT_DIR; BEGIN { use Cwd qw/ abs_path getcwd /; use File::Basename; $SCRIPT_DIR = dirname(abs_path($0)); push @INC, $SCRIPT_DIR; }
use Getopt::Long;
my $MAX_ITER_ATTEMPTS = 5; # number of times to retry a failed function evaluation
my $CWD=getcwd();
my $OPTIMIZER = "$SCRIPT_DIR/mr_optimize_reduce";
my $DECODER = "$SCRIPT_DIR/../decoder/cdec";
my $COMBINER_CACHE_SIZE = 150;
# This is a hack to run this on a weird cluster,
# eventually, I'll provide Hadoop scripts.
my $PARALLEL = "/chomes/redpony/svn-trunk/sa-utils/parallelize.pl";
die "Can't find $OPTIMIZER" unless -f $OPTIMIZER;
die "Can't execute $OPTIMIZER" unless -x $OPTIMIZER;
my $restart = '';
if ($ARGV[0] && $ARGV[0] eq '--restart') { shift @ARGV; $restart = 1; }
my $pmem="2500mb";
my $nodes = 1;
my $max_iteration = 1000;
my $PRIOR_FLAG = "";
my $parallel = 1;
my $CFLAG = "-C 1";
my $LOCAL;
my $DISTRIBUTED;
my $PRIOR;
my $OALG = "lbfgs";
my $sigsq = 1;
my $means_file;
my $mem_buffers = 20;
my $RESTART_IF_NECESSARY;
GetOptions("cdec=s" => \$DECODER,
"distributed" => \$DISTRIBUTED,
"sigma_squared=f" => \$sigsq,
"lbfgs_memory_buffers=i" => \$mem_buffers,
"max_iteration=i" => \$max_iteration,
"means=s" => \$means_file,
"optimizer=s" => \$OALG,
"gaussian_prior" => \$PRIOR,
"restart_if_necessary" => \$RESTART_IF_NECESSARY,
"jobs=i" => \$nodes,
"pmem=s" => \$pmem
) or usage();
usage() unless scalar @ARGV==3;
my $config_file = shift @ARGV;
my $training_corpus = shift @ARGV;
my $initial_weights = shift @ARGV;
unless ($DISTRIBUTED) { $LOCAL = 1; }
die "Can't find $config_file" unless -f $config_file;
die "Can't find $DECODER" unless -f $DECODER;
die "Can't execute $DECODER" unless -x $DECODER;
if ($LOCAL) { print STDERR "Will run LOCALLY.\n"; $parallel = 0; }
if ($PRIOR) {
$PRIOR_FLAG="-p --sigma_squared $sigsq";
if ($means_file) { $PRIOR_FLAG .= " -u $means_file"; }
}
if ($parallel) {
die "Can't find $PARALLEL" unless -f $PARALLEL;
die "Can't execute $PARALLEL" unless -x $PARALLEL;
}
unless ($parallel) { $CFLAG = "-C 500"; }
unless ($config_file =~ /^\//) { $config_file = $CWD . '/' . $config_file; }
my $clines = num_lines($training_corpus);
my $dir = "$CWD/ptrain";
if ($RESTART_IF_NECESSARY && -d $dir) {
$restart = 1;
}
print STDERR <<EOT;
PTRAIN CONFIGURATION INFORMATION
Config file: $config_file
Training corpus: $training_corpus
Corpus size: $clines
Initial weights: $initial_weights
Decoder memory: $pmem
Max iterations: $max_iteration
Optimizer: $OALG
Jobs requested: $nodes
prior?: $PRIOR_FLAG
restart?: $restart
EOT
if ($OALG) { $OALG="-m $OALG"; }
my $nodelist="1";
for (my $i=1; $i<$nodes; $i++) { $nodelist .= " 1"; }
my $iter = 1;
if ($restart) {
die "$dir doesn't exist, but --restart specified!\n" unless -d $dir;
my $o = `ls -t $dir/weights.*`;
my ($a, @x) = split /\n/, $o;
if ($a =~ /weights.(\d+)\.gz$/) {
$iter = $1;
} else {
die "Unexpected file: $a!\n";
}
print STDERR "Restarting at iteration $iter\n";
} else {
die "$dir already exists!\n" if -e $dir;
mkdir $dir or die "Can't create $dir: $!";
unless ($initial_weights =~ /\.gz$/) {
`cp $initial_weights $dir/weights.1`;
`gzip -9 $dir/weights.1`;
} else {
`cp $initial_weights $dir/weights.1.gz`;
}
open T, "<$training_corpus" or die "Can't read $training_corpus: $!";
open TO, ">$dir/training.in";
my $lc = 0;
while(<T>) {
chomp;
s/^\s+//;
s/\s+$//;
die "Expected A ||| B in input file" unless / \|\|\| /;
print TO "<seg id=\"$lc\">$_</seg>\n";
$lc++;
}
close T;
close TO;
}
$training_corpus = "$dir/training.in";
my $iter_attempts = 1;
while ($iter < $max_iteration) {
my $cur_time = `date`; chomp $cur_time;
print STDERR "\nStarting iteration $iter...\n";
print STDERR " time: $cur_time\n";
my $start = time;
my $next_iter = $iter + 1;
my $dec_cmd="$DECODER -G $CFLAG -c $config_file -w $dir/weights.$iter.gz < $training_corpus 2> $dir/deco.log.$iter";
my $opt_cmd = "$OPTIMIZER $PRIOR_FLAG -M $mem_buffers $OALG -s $dir/opt.state -i $dir/weights.$iter.gz -o $dir/weights.$next_iter.gz";
my $pcmd = "$PARALLEL -e $dir/err -p $pmem --nodelist \"$nodelist\" -- ";
my $cmd = "";
if ($parallel) { $cmd = $pcmd; }
$cmd .= "$dec_cmd | $opt_cmd";
print STDERR "EXECUTING: $cmd\n";
my $result = `$cmd`;
my $exit_code = $? >> 8;
if ($exit_code == 99) {
$iter_attempts++;
if ($iter_attempts > $MAX_ITER_ATTEMPTS) {
die "Received restart request $iter_attempts times from optimizer, giving up\n";
}
print STDERR "Function evaluation failed, retrying (attempt $iter_attempts)\n";
next;
}
if ($? != 0) {
die "Error running iteration $iter: $!";
}
chomp $result;
my $end = time;
my $diff = ($end - $start);
print STDERR " ITERATION $iter TOOK $diff SECONDS\n";
$iter = $next_iter;
if ($result =~ /1$/) {
print STDERR "Training converged.\n";
last;
}
$iter_attempts = 1;
}
print "FINAL WEIGHTS: $dir/weights.$iter\n";
`mv $dir/weights.$iter.gz $dir/weights.final.gz`;
sub usage {
die <<EOT;
Usage: $0 [OPTIONS] cdec.ini training.corpus weights.init
Options:
--distributed Parallelize function evaluation
--jobs N Number of jobs to use
--cdec PATH Path to cdec binary
--optimize OPT lbfgs, rprop, sgd
--gaussian_prior add Gaussian prior
--means FILE if you want means other than 0
--sigma_squared S variance on prior
--pmem MEM Memory required for decoder
--lbfgs_memory_buffers Number of buffers to use
with LBFGS optimizer
EOT
}
sub num_lines {
my $file = shift;
my $fh;
if ($file=~ /\.gz$/) {
open $fh, "zcat $file|" or die "Couldn't fork zcat $file: $!";
} else {
open $fh, "<$file" or die "Couldn't read $file: $!";
}
my $lines = 0;
while(<$fh>) { $lines++; }
close $fh;
return $lines;
}
|