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| author | Chris Dyer <prguest11@taipan.cs> | 2012-02-02 06:29:50 +0000 |
|---|---|---|
| committer | Chris Dyer <prguest11@taipan.cs> | 2012-02-02 06:29:50 +0000 |
| commit | 8e5fad9bcbadf36bbab3c1c5b053e3c8f7dddbce (patch) | |
| tree | 9c812b3f267aa1975cdf8b7af928c4b20eb36f93 /sa-extract/calignment.pxd | |
| parent | ff496d3089e84846c8562c574155d8df1e4d911c (diff) | |
lopez suffix array extractor with copyrighted david chiang code excised
Diffstat (limited to 'sa-extract/calignment.pxd')
| -rw-r--r-- | sa-extract/calignment.pxd | 10 |
1 files changed, 10 insertions, 0 deletions
diff --git a/sa-extract/calignment.pxd b/sa-extract/calignment.pxd new file mode 100644 index 00000000..a7d3001f --- /dev/null +++ b/sa-extract/calignment.pxd @@ -0,0 +1,10 @@ +cimport cintlist +from libc.stdio cimport FILE + +cdef class Alignment: + + cdef cintlist.CIntList links + cdef cintlist.CIntList sent_index + cdef int link(self, int i, int j) + cdef _unlink(self, int link, int* f, int* e) + cdef int* _get_sent_links(self, int sent_id, int* num_links) |