Merge branch 'master' of https://github.com/redpony/cdec

12 files changed, 387 insertions, 88 deletions

diff --git a/klm/util/fake_ofstream.hh b/klm/util/fake_ofstream.hh
new file mode 100644
index 00000000..bcdebe45
--- /dev/null
+++ b/klm/util/fake_ofstream.hh
@@ -0,0 +1,94 @@
+/* Like std::ofstream but without being incredibly slow.  Backed by a raw fd.
+ * Does not support many data types.  Currently, it's targeted at writing ARPA
+ * files quickly.
+ */
+#include "util/double-conversion/double-conversion.h"
+#include "util/double-conversion/utils.h"
+#include "util/file.hh"
+#include "util/scoped.hh"
+#include "util/string_piece.hh"
+
+#define BOOST_LEXICAL_CAST_ASSUME_C_LOCALE
+#include <boost/lexical_cast.hpp>
+
+namespace util {
+class FakeOFStream {
+  public:
+    static const std::size_t kOutBuf = 1048576;
+
+    // Does not take ownership of out.
+    explicit FakeOFStream(int out)
+      : buf_(util::MallocOrThrow(kOutBuf)),
+        builder_(static_cast<char*>(buf_.get()), kOutBuf),
+        // Mostly the default but with inf instead.  And no flags.
+        convert_(double_conversion::DoubleToStringConverter::NO_FLAGS, "inf", "NaN", 'e', -6, 21, 6, 0),
+        fd_(out) {}
+
+    ~FakeOFStream() {
+      if (buf_.get()) Flush();
+    }
+
+    FakeOFStream &operator<<(float value) {
+      // Odd, but this is the largest number found in the comments.
+      EnsureRemaining(double_conversion::DoubleToStringConverter::kMaxPrecisionDigits + 8);
+      convert_.ToShortestSingle(value, &builder_);
+      return *this;
+    }
+
+    FakeOFStream &operator<<(double value) {
+      EnsureRemaining(double_conversion::DoubleToStringConverter::kMaxPrecisionDigits + 8);
+      convert_.ToShortest(value, &builder_);
+      return *this;
+    }
+
+    FakeOFStream &operator<<(StringPiece str) {
+      if (str.size() > kOutBuf) {
+        Flush();
+        util::WriteOrThrow(fd_, str.data(), str.size());
+      } else {
+        EnsureRemaining(str.size());
+        builder_.AddSubstring(str.data(), str.size());
+      }
+      return *this;
+    }
+
+    // Inefficient!  TODO: more efficient implementation
+    FakeOFStream &operator<<(unsigned value) {
+      return *this << boost::lexical_cast<std::string>(value);
+    }
+
+    FakeOFStream &operator<<(char c) {
+      EnsureRemaining(1);
+      builder_.AddCharacter(c);
+      return *this;
+    }
+
+    // Note this does not sync.
+    void Flush() {
+      util::WriteOrThrow(fd_, buf_.get(), builder_.position());
+      builder_.Reset();
+    }
+
+    // Not necessary, but does assure the data is cleared.
+    void Finish() {
+      Flush();
+      // It will segfault trying to null terminate otherwise.
+      builder_.Finalize();
+      buf_.reset();
+      util::FSyncOrThrow(fd_);
+    }
+
+  private:
+    void EnsureRemaining(std::size_t amount) {
+      if (static_cast<std::size_t>(builder_.size() - builder_.position()) <= amount) {
+        Flush();
+      }
+    }
+
+    util::scoped_malloc buf_;
+    double_conversion::StringBuilder builder_;
+    double_conversion::DoubleToStringConverter convert_;
+    int fd_;
+};
+
+} // namespace
diff --git a/klm/util/file.cc b/klm/util/file.cc
index 86d9b12d..c7d8e23b 100644
--- a/klm/util/file.cc
+++ b/klm/util/file.cc
@@ -111,15 +111,26 @@ void ResizeOrThrow(int fd, uint64_t to) {
   UTIL_THROW_IF_ARG(ret, FDException, (fd), "while resizing to " << to << " bytes");
 }
 
+namespace {
+std::size_t GuardLarge(std::size_t size) {
+  // The following operating systems have broken read/write/pread/pwrite that
+  // only supports up to 2^31.
+#if defined(_WIN32) || defined(_WIN64) || defined(__APPLE__) || defined(OS_ANDROID)
+  return std::min(static_cast<std::size_t>(INT_MAX), size);
+#else
+  return size;
+#endif
+}
+}
+
 std::size_t PartialRead(int fd, void *to, std::size_t amount) {
 #if defined(_WIN32) || defined(_WIN64)
-  amount = min(static_cast<std::size_t>(INT_MAX), amount);
-  int ret = _read(fd, to, amount); 
+  int ret = _read(fd, to, GuardLarge(amount));
 #else
   errno = 0;
   ssize_t ret;
   do {
-    ret = read(fd, to, amount);
+    ret = read(fd, to, GuardLarge(amount));
   } while (ret == -1 && errno == EINTR);
 #endif
   UTIL_THROW_IF_ARG(ret < 0, FDException, (fd), "while reading " << amount << " bytes");
@@ -169,11 +180,13 @@ void PReadOrThrow(int fd, void *to_void, std::size_t size, uint64_t off) {
     ssize_t ret;
     errno = 0;
     do {
+      ret =
 #ifdef OS_ANDROID
-      ret = pread64(fd, to, size, off);
+        pread64
 #else
-      ret = pread(fd, to, size, off);
+        pread
 #endif
+        (fd, to, GuardLarge(size), off);
     } while (ret == -1 && errno == EINTR);
     if (ret <= 0) {
       UTIL_THROW_IF(ret == 0, EndOfFileException, " for reading " << size << " bytes at " << off << " from " << NameFromFD(fd));
@@ -190,14 +203,20 @@ void WriteOrThrow(int fd, const void *data_void, std::size_t size) {
   const uint8_t *data = static_cast<const uint8_t*>(data_void);
   while (size) {
 #if defined(_WIN32) || defined(_WIN64)
-    int ret = write(fd, data, min(static_cast<std::size_t>(INT_MAX), size));
+    int ret;
 #else
-    errno = 0;
     ssize_t ret;
+#endif
+    errno = 0;
     do {
-      ret = write(fd, data, size);
-    } while (ret == -1 && errno == EINTR);
+      ret = 
+#if defined(_WIN32) || defined(_WIN64)
+        _write
+#else
+        write
 #endif
+        (fd, data, GuardLarge(size));
+    } while (ret == -1 && errno == EINTR);
     UTIL_THROW_IF_ARG(ret < 1, FDException, (fd), "while writing " << size << " bytes");
     data += ret;
     size -= ret;
diff --git a/klm/util/file_piece.cc b/klm/util/file_piece.cc
index 9de30fc4..b5961bea 100644
--- a/klm/util/file_piece.cc
+++ b/klm/util/file_piece.cc
@@ -51,7 +51,7 @@ FilePiece::FilePiece(int fd, const char *name, std::ostream *show_progress, std:
 
 FilePiece::FilePiece(std::istream &stream, const char *name, std::size_t min_buffer) :
   total_size_(kBadSize), page_(SizePage()) {
-  InitializeNoRead(name ? name : "istream", min_buffer);
+  InitializeNoRead("istream", min_buffer);
 
   fallback_to_read_ = true;
   data_.reset(MallocOrThrow(default_map_size_), default_map_size_, scoped_memory::MALLOC_ALLOCATED);
@@ -95,32 +95,6 @@ unsigned long int FilePiece::ReadULong() {
   return ReadNumber<unsigned long int>();
 }
 
-std::size_t FilePiece::Raw(void *to, std::size_t limit) {
-  if (!limit) return 0;
-  std::size_t in_buf = static_cast<std::size_t>(position_end_ - position_);
-  if (in_buf) {
-    std::size_t amount = std::min(in_buf, limit);
-    memcpy(to, position_, amount);
-    position_ += amount;
-    return amount;
-  }
-
-  std::size_t read_return;
-  if (fallback_to_read_) {
-    read_return = fell_back_.Read(to, limit);
-    progress_.Set(fell_back_.RawAmount());
-  } else {
-    uint64_t desired_begin = mapped_offset_ + static_cast<uint64_t>(position_ - data_.begin());
-    SeekOrThrow(file_.get(), desired_begin);
-    read_return = ReadOrEOF(file_.get(), to, limit);
-    // Good thing we never rewind.  This makes desired_begin calculate the right way the next time.
-    mapped_offset_ += static_cast<uint64_t>(read_return);
-    progress_ += read_return;
-  }
-  at_end_ |= (read_return == 0);
-  return read_return;
-}
-
 // Factored out so that istream can call this.
 void FilePiece::InitializeNoRead(const char *name, std::size_t min_buffer) {
   file_name_ = name;
@@ -146,7 +120,7 @@ void FilePiece::Initialize(const char *name, std::ostream *show_progress, std::s
   }
   Shift();
   // gzip detect.
-  if ((position_end_ - position_) >= ReadCompressed::kMagicSize && ReadCompressed::DetectCompressedMagic(position_)) {
+  if ((position_end_ >= position_ + ReadCompressed::kMagicSize) && ReadCompressed::DetectCompressedMagic(position_)) {
     if (!fallback_to_read_) {
       at_end_ = false;
       TransitionToRead();
@@ -244,7 +218,7 @@ void FilePiece::MMapShift(uint64_t desired_begin) {
   // Use mmap.  
   uint64_t ignore = desired_begin % page_;
   // Duplicate request for Shift means give more data.  
-  if (position_ == data_.begin() + ignore) {
+  if (position_ == data_.begin() + ignore && position_) {
     default_map_size_ *= 2;
   }
   // Local version so that in case of failure it doesn't overwrite the class variable.  
diff --git a/klm/util/file_piece.hh b/klm/util/file_piece.hh
index 1b110287..c07c6011 100644
--- a/klm/util/file_piece.hh
+++ b/klm/util/file_piece.hh
@@ -64,10 +64,7 @@ class FilePiece {
     long int ReadLong();
     unsigned long int ReadULong();
 
-    // Fake read() function.  Reads up to limit bytes, returning the amount read.  Returns 0 on EOF || limit == 0. 
-    std::size_t Raw(void *to, std::size_t limit);
-
-    // Skip spaces defined by being in delim.
+    // Skip spaces defined by isspace.
     void SkipSpaces(const bool *delim = kSpaces) {
       for (; ; ++position_) {
         if (position_ == position_end_) Shift();
diff --git a/klm/util/mmap.cc b/klm/util/mmap.cc
index bc9e3f81..6f79f26f 100644
--- a/klm/util/mmap.cc
+++ b/klm/util/mmap.cc
@@ -6,6 +6,7 @@
 
 #include "util/exception.hh"
 #include "util/file.hh"
+#include "util/scoped.hh"
 
 #include <iostream>
 
@@ -110,8 +111,14 @@ void *MapOrThrow(std::size_t size, bool for_write, int flags, bool prefault, int
   UTIL_THROW_IF(!ret, ErrnoException, "MapViewOfFile failed");
 #else
   int protect = for_write ? (PROT_READ | PROT_WRITE) : PROT_READ;
-  void *ret = mmap(NULL, size, protect, flags, fd, offset);
-  UTIL_THROW_IF(ret == MAP_FAILED, ErrnoException, "mmap failed for size " << size << " at offset " << offset);
+  void *ret;
+  UTIL_THROW_IF((ret = mmap(NULL, size, protect, flags, fd, offset)) == MAP_FAILED, ErrnoException, "mmap failed for size " << size << " at offset " << offset);
+#  ifdef MADV_HUGEPAGE
+  /* We like huge pages but it's fine if we can't have them.  Note that huge
+   * pages are not supported for file-backed mmap on linux.
+   */
+  madvise(ret, size, MADV_HUGEPAGE);
+#  endif
 #endif
   return ret;
 }
@@ -141,8 +148,7 @@ void MapRead(LoadMethod method, int fd, uint64_t offset, std::size_t size, scope
     case POPULATE_OR_READ:
 #endif
     case READ:
-      out.reset(malloc(size), size, scoped_memory::MALLOC_ALLOCATED);
-      if (!out.get()) UTIL_THROW(util::ErrnoException, "Allocating " << size << " bytes with malloc");
+      out.reset(MallocOrThrow(size), size, scoped_memory::MALLOC_ALLOCATED);
       SeekOrThrow(fd, offset);
       ReadOrThrow(fd, out.get(), size);
       break;
diff --git a/klm/util/probing_hash_table.hh b/klm/util/probing_hash_table.hh
index 6780489d..57866ff9 100644
--- a/klm/util/probing_hash_table.hh
+++ b/klm/util/probing_hash_table.hh
@@ -6,6 +6,7 @@
 #include <algorithm>
 #include <cstddef>
 #include <functional>
+#include <vector>
 
 #include <assert.h>
 #include <stdint.h>
@@ -73,10 +74,7 @@ template <class EntryT, class HashT, class EqualT = std::equal_to<typename Entry
       assert(initialized_);
 #endif
       UTIL_THROW_IF(++entries_ >= buckets_, ProbingSizeException, "Hash table with " << buckets_ << " buckets is full.");
-      for (MutableIterator i(begin_ + (hash_(t.GetKey()) % buckets_));;) {
-        if (equal_(i->GetKey(), invalid_)) { *i = t; return i; }
-        if (++i == end_) { i = begin_; }
-      }
+      return UncheckedInsert(t);
     }
 
     // Return true if the value was found (and not inserted).  This is consistent with Find but the opposite if hash_map!
@@ -126,12 +124,96 @@ template <class EntryT, class HashT, class EqualT = std::equal_to<typename Entry
       }    
     }
 
-    void Clear(Entry invalid) {
+    void Clear() {
+      Entry invalid;
+      invalid.SetKey(invalid_);
       std::fill(begin_, end_, invalid);
       entries_ = 0;
     }
 
+    // Return number of entries assuming no serialization went on.
+    std::size_t SizeNoSerialization() const {
+      return entries_;
+    }
+
+    // Return memory size expected by Double.
+    std::size_t DoubleTo() const {
+      return buckets_ * 2 * sizeof(Entry);
+    }
+
+    // Inform the table that it has double the amount of memory.
+    // Pass clear_new = false if you are sure the new memory is initialized
+    // properly (to invalid_) i.e. by mremap.
+    void Double(void *new_base, bool clear_new = true) {
+      begin_ = static_cast<MutableIterator>(new_base);
+      MutableIterator old_end = begin_ + buckets_;
+      buckets_ *= 2;
+      end_ = begin_ + buckets_;
+      if (clear_new) {
+        Entry invalid;
+        invalid.SetKey(invalid_);
+        std::fill(old_end, end_, invalid);
+      }
+      std::vector<Entry> rolled_over;
+      // Move roll-over entries to a buffer because they might not roll over anymore.  This should be small.
+      for (MutableIterator i = begin_; i != old_end && !equal_(i->GetKey(), invalid_); ++i) {
+        rolled_over.push_back(*i);
+        i->SetKey(invalid_);
+      }
+      /* Re-insert everything.  Entries might go backwards to take over a
+       * recently opened gap, stay, move to new territory, or wrap around.   If
+       * an entry wraps around, it might go to a pointer greater than i (which
+       * can happen at the beginning) and it will be revisited to possibly fill
+       * in a gap created later.
+       */
+      Entry temp;
+      for (MutableIterator i = begin_; i != old_end; ++i) {
+        if (!equal_(i->GetKey(), invalid_)) {
+          temp = *i;
+          i->SetKey(invalid_);
+          UncheckedInsert(temp);
+        }
+      }
+      // Put the roll-over entries back in.
+      for (typename std::vector<Entry>::const_iterator i(rolled_over.begin()); i != rolled_over.end(); ++i) {
+        UncheckedInsert(*i);
+      }
+    }
+
+    // Mostly for tests, check consistency of every entry.
+    void CheckConsistency() {
+      MutableIterator last;
+      for (last = end_ - 1; last >= begin_ && !equal_(last->GetKey(), invalid_); --last) {}
+      UTIL_THROW_IF(last == begin_, ProbingSizeException, "Completely full");
+      MutableIterator i;
+      // Beginning can be wrap-arounds.
+      for (i = begin_; !equal_(i->GetKey(), invalid_); ++i) {
+        MutableIterator ideal = Ideal(*i);
+        UTIL_THROW_IF(ideal > i && ideal <= last, Exception, "Inconsistency at position " << (i - begin_) << " should be at " << (ideal - begin_));
+      }
+      MutableIterator pre_gap = i;
+      for (; i != end_; ++i) {
+        if (equal_(i->GetKey(), invalid_)) {
+          pre_gap = i;
+          continue;
+        }
+        MutableIterator ideal = Ideal(*i);
+        UTIL_THROW_IF(ideal > i || ideal <= pre_gap, Exception, "Inconsistency at position " << (i - begin_) << " with ideal " << (ideal - begin_));
+      }
+    }
+
   private:
+    template <class T> MutableIterator Ideal(const T &t) {
+      return begin_ + (hash_(t.GetKey()) % buckets_);
+    }
+
+    template <class T> MutableIterator UncheckedInsert(const T &t) {
+      for (MutableIterator i(Ideal(t));;) {
+        if (equal_(i->GetKey(), invalid_)) { *i = t; return i; }
+        if (++i == end_) { i = begin_; }
+      }
+    }
+
     MutableIterator begin_;
     std::size_t buckets_;
     MutableIterator end_;
diff --git a/klm/util/probing_hash_table_test.cc b/klm/util/probing_hash_table_test.cc
index be0fa859..9f7948ce 100644
--- a/klm/util/probing_hash_table_test.cc
+++ b/klm/util/probing_hash_table_test.cc
@@ -1,10 +1,14 @@
 #include "util/probing_hash_table.hh"
 
+#include "util/murmur_hash.hh"
+#include "util/scoped.hh"
+
 #define BOOST_TEST_MODULE ProbingHashTableTest
 #include <boost/test/unit_test.hpp>
 #include <boost/scoped_array.hpp>
 #include <boost/functional/hash.hpp>
 #include <stdio.h>
+#include <stdlib.h>
 #include <string.h>
 #include <stdint.h>
 
@@ -19,6 +23,10 @@ struct Entry {
     return key;
   }
 
+  void SetKey(unsigned char to) {
+    key = to;
+  }
+
   uint64_t GetValue() const {
     return value;
   }
@@ -46,5 +54,49 @@ BOOST_AUTO_TEST_CASE(simple) {
   BOOST_CHECK(!table.Find(2, i));
 }
 
+struct Entry64 {
+  uint64_t key;
+  typedef uint64_t Key;
+
+  Entry64() {}
+
+  explicit Entry64(uint64_t key_in) {
+    key = key_in;
+  }
+
+  Key GetKey() const { return key; }
+  void SetKey(uint64_t to) { key = to; }
+};
+
+struct MurmurHashEntry64 {
+  std::size_t operator()(uint64_t value) const {
+    return util::MurmurHash64A(&value, 8);
+  }
+};
+
+typedef ProbingHashTable<Entry64, MurmurHashEntry64> Table64;
+
+BOOST_AUTO_TEST_CASE(Double) {
+  for (std::size_t initial = 19; initial < 30; ++initial) {
+    size_t size = Table64::Size(initial, 1.2);
+    scoped_malloc mem(MallocOrThrow(size));
+    Table64 table(mem.get(), size, std::numeric_limits<uint64_t>::max());
+    table.Clear();
+    for (uint64_t i = 0; i < 19; ++i) {
+      table.Insert(Entry64(i));
+    }
+    table.CheckConsistency();
+    mem.call_realloc(table.DoubleTo());
+    table.Double(mem.get());
+    table.CheckConsistency();
+    for (uint64_t i = 20; i < 40 ; ++i) {
+      table.Insert(Entry64(i));
+    }
+    mem.call_realloc(table.DoubleTo());
+    table.Double(mem.get());
+    table.CheckConsistency();
+  }
+}
+
 } // namespace
 } // namespace util
diff --git a/klm/util/read_compressed.cc b/klm/util/read_compressed.cc
index b81549e4..b62a6e83 100644
--- a/klm/util/read_compressed.cc
+++ b/klm/util/read_compressed.cc
@@ -180,12 +180,73 @@ class GZip : public ReadBase {
 };
 #endif // HAVE_ZLIB
 
+const uint8_t kBZMagic[3] = {'B', 'Z', 'h'};
+
 #ifdef HAVE_BZLIB
 class BZip : public ReadBase {
   public:
-    explicit BZip(int fd, void *already_data, std::size_t already_size) {
+    BZip(int fd, void *already_data, std::size_t already_size) {
       scoped_fd hold(fd);
       closer_.reset(FDOpenReadOrThrow(hold));
+      file_ = NULL;
+      Open(already_data, already_size);
+    }
+
+    BZip(FILE *file, void *already_data, std::size_t already_size) {
+      closer_.reset(file);
+      file_ = NULL;
+      Open(already_data, already_size);
+    }
+
+    ~BZip() {
+      Close(file_);
+    }
+
+    std::size_t Read(void *to, std::size_t amount, ReadCompressed &thunk) {
+      assert(file_);
+      int bzerror = BZ_OK;
+      int ret = BZ2_bzRead(&bzerror, file_, to, std::min<std::size_t>(static_cast<std::size_t>(INT_MAX), amount));
+      long pos = ftell(closer_.get());
+      if (pos != -1) ReadCount(thunk) = pos;
+      switch (bzerror) {
+        case BZ_STREAM_END:
+          /* bzip2 files can be concatenated by e.g. pbzip2.  Annoyingly, the
+           * library doesn't handle this internally.  This gets the trailing
+           * data, grows it up to magic as needed, validates the magic, and
+           * reopens.
+           */
+          {
+            bzerror = BZ_OK;
+            void *trailing_data;
+            int trailing_size;
+            BZ2_bzReadGetUnused(&bzerror, file_, &trailing_data, &trailing_size);
+            UTIL_THROW_IF(bzerror != BZ_OK, BZException, "bzip2 error in BZ2_bzReadGetUnused " << BZ2_bzerror(file_, &bzerror) << " code " << bzerror);
+            std::string trailing(static_cast<const char*>(trailing_data), trailing_size);
+            Close(file_);
+
+            if (trailing_size < (int)sizeof(kBZMagic)) {
+              trailing.resize(sizeof(kBZMagic));
+              if (1 != fread(&trailing[trailing_size], sizeof(kBZMagic) - trailing_size, 1, closer_.get())) {
+                UTIL_THROW_IF(trailing_size, BZException, "File has trailing cruft");
+                // Legitimate end of file.
+                ReplaceThis(new Complete(), thunk);
+                return ret;
+              }
+            }
+            UTIL_THROW_IF(memcmp(trailing.data(), kBZMagic, sizeof(kBZMagic)), BZException, "Trailing cruft is not another bzip2 stream");
+            Open(&trailing[0], trailing.size());
+          }
+          return ret;
+        case BZ_OK:
+          return ret;
+        default:
+          UTIL_THROW(BZException, "bzip2 error " << BZ2_bzerror(file_, &bzerror) << " code " << bzerror);
+      }
+    }
+
+  private:
+    void Open(void *already_data, std::size_t already_size) {
+      assert(!file_);
       int bzerror = BZ_OK;
       file_ = BZ2_bzReadOpen(&bzerror, closer_.get(), 0, 0, already_data, already_size);
       switch (bzerror) {
@@ -199,38 +260,23 @@ class BZip : public ReadBase {
           UTIL_THROW(BZException, "IO error reading file");
         case BZ_MEM_ERROR:
           throw std::bad_alloc();
+        default:
+          UTIL_THROW(BZException, "Unknown bzip2 error code " << bzerror);
       }
+      assert(file_);
     }
 
-    ~BZip() {
+    static void Close(BZFILE *&file) {
+      if (file == NULL) return;
       int bzerror = BZ_OK;
-      BZ2_bzReadClose(&bzerror, file_);
+      BZ2_bzReadClose(&bzerror, file);
       if (bzerror != BZ_OK) {
-        std::cerr << "bz2 readclose error" << std::endl;
+        std::cerr << "bz2 readclose error number " << bzerror << std::endl;
         abort();
       }
+      file = NULL;
     }
 
-    std::size_t Read(void *to, std::size_t amount, ReadCompressed &thunk) {
-      int bzerror = BZ_OK;
-      int ret = BZ2_bzRead(&bzerror, file_, to, std::min<std::size_t>(static_cast<std::size_t>(INT_MAX), amount));
-      long pos;
-      switch (bzerror) {
-        case BZ_STREAM_END:
-          pos = ftell(closer_.get());
-          if (pos != -1) ReadCount(thunk) = pos;
-          ReplaceThis(new Complete(), thunk);
-          return ret;
-        case BZ_OK:
-          pos = ftell(closer_.get());
-          if (pos != -1) ReadCount(thunk) = pos;
-          return ret;
-        default:
-          UTIL_THROW(BZException, "bzip2 error " << BZ2_bzerror(file_, &bzerror) << " code " << bzerror);
-      }
-    }
-
-  private:
     scoped_FILE closer_;
     BZFILE *file_;
 };
@@ -346,11 +392,11 @@ MagicResult DetectMagic(const void *from_void) {
   if (header[0] == 0x1f && header[1] == 0x8b) {
     return GZIP;
   }
-  if (header[0] == 'B' && header[1] == 'Z' && header[2] == 'h') {
+  if (!memcmp(header, kBZMagic, sizeof(kBZMagic))) {
     return BZIP;
   }
-  const uint8_t xzmagic[6] = { 0xFD, '7', 'z', 'X', 'Z', 0x00 };
-  if (!memcmp(header, xzmagic, 6)) {
+  const uint8_t kXZMagic[6] = { 0xFD, '7', 'z', 'X', 'Z', 0x00 };
+  if (!memcmp(header, kXZMagic, sizeof(kXZMagic))) {
     return XZIP;
   }
   return UNKNOWN;
diff --git a/klm/util/scoped.cc b/klm/util/scoped.cc
index e7066ee4..6c5b0c2d 100644
--- a/klm/util/scoped.cc
+++ b/klm/util/scoped.cc
@@ -1,6 +1,9 @@
 #include "util/scoped.hh"
 
 #include <cstdlib>
+#if !defined(_WIN32) && !defined(_WIN64)
+#include <sys/mman.h>
+#endif
 
 namespace util {
 
@@ -10,20 +13,31 @@ MallocException::MallocException(std::size_t requested) throw() {
 
 MallocException::~MallocException() throw() {}
 
+namespace {
+void *InspectAddr(void *addr, std::size_t requested, const char *func_name) {
+  UTIL_THROW_IF_ARG(!addr && requested, MallocException, (requested), "in " << func_name);
+  // These routines are often used for large chunks of memory where huge pages help.
+#if MADV_HUGEPAGE
+  madvise(addr, requested, MADV_HUGEPAGE);
+#endif
+  return addr;
+}
+} // namespace
+
 void *MallocOrThrow(std::size_t requested) {
-  void *ret;
-  UTIL_THROW_IF_ARG(!(ret = std::malloc(requested)), MallocException, (requested), "in malloc");
-  return ret;
+  return InspectAddr(std::malloc(requested), requested, "malloc");
+}
+
+void *CallocOrThrow(std::size_t requested) {
+  return InspectAddr(std::calloc(1, requested), requested, "calloc");
 }
 
 scoped_malloc::~scoped_malloc() {
   std::free(p_);
 }
 
-void scoped_malloc::call_realloc(std::size_t to) {
-  void *ret;
-  UTIL_THROW_IF_ARG(!(ret = std::realloc(p_, to)) && to, MallocException, (to), "in realloc");
-  p_ = ret;
+void scoped_malloc::call_realloc(std::size_t requested) {
+  p_ = InspectAddr(std::realloc(p_, requested), requested, "realloc");
 }
 
 } // namespace util
diff --git a/klm/util/scoped.hh b/klm/util/scoped.hh
index d0a5aabd..b642d064 100644
--- a/klm/util/scoped.hh
+++ b/klm/util/scoped.hh
@@ -14,6 +14,7 @@ class MallocException : public ErrnoException {
 };
 
 void *MallocOrThrow(std::size_t requested);
+void *CallocOrThrow(std::size_t requested);
 
 class scoped_malloc {
   public:
diff --git a/klm/util/sized_iterator.hh b/klm/util/sized_iterator.hh
index aabcc531..cf998953 100644
--- a/klm/util/sized_iterator.hh
+++ b/klm/util/sized_iterator.hh
@@ -3,6 +3,7 @@
 
 #include "util/proxy_iterator.hh"
 
+#include <algorithm>
 #include <functional>
 #include <string>
 
@@ -63,6 +64,13 @@ class SizedProxy {
     const void *Data() const { return inner_.Data(); }
     void *Data() { return inner_.Data(); }
 
+    friend void swap(SizedProxy &first, SizedProxy &second) {
+      std::swap_ranges(
+          static_cast<char*>(first.inner_.Data()), 
+          static_cast<char*>(first.inner_.Data()) + first.inner_.EntrySize(),
+          static_cast<char*>(second.inner_.Data()));
+    }
+
   private:
     friend class util::ProxyIterator<SizedProxy>;
 
diff --git a/klm/util/usage.cc b/klm/util/usage.cc
index b8e125d0..ad4dc7b4 100644
--- a/klm/util/usage.cc
+++ b/klm/util/usage.cc
@@ -22,6 +22,11 @@ float FloatSec(const struct timeval &tv) {
   return static_cast<float>(tv.tv_sec) + (static_cast<float>(tv.tv_usec) / 1000000.0);
 }
 #endif
+
+const char *SkipSpaces(const char *at) {
+  for (; *at == ' '; ++at) {}
+  return at;
+}
 } // namespace
 
 void PrintUsage(std::ostream &out) {
@@ -32,18 +37,19 @@ void PrintUsage(std::ostream &out) {
     return;
   }
   out << "user\t" << FloatSec(usage.ru_utime) << "\nsys\t" << FloatSec(usage.ru_stime) << '\n';
-
+  out << "CPU\t" << (FloatSec(usage.ru_utime) + FloatSec(usage.ru_stime)) << '\n';
   // Linux doesn't set memory usage :-(.  
   std::ifstream status("/proc/self/status", std::ios::in);
   std::string line;
   while (getline(status, line)) {
     if (!strncmp(line.c_str(), "VmRSS:\t", 7)) {
-      out << "VmRSS:  " << (line.c_str() + 7) << '\n';
+      out << "RSSCur\t" << SkipSpaces(line.c_str() + 7) << '\n';
       break;
     } else if (!strncmp(line.c_str(), "VmPeak:\t", 8)) {
-      out << "VmPeak: " << (line.c_str() + 8) << '\n';
+      out << "VmPeak\t" << SkipSpaces(line.c_str() + 8) << '\n';
     }
   }
+  out << "RSSMax\t" << usage.ru_maxrss << " kB" << '\n';
 #endif
 }