fixed conflicts

2 files changed, 0 insertions, 131 deletions

diff --git a/gi/posterior-regularisation/prjava/src/io/FileUtil.java b/gi/posterior-regularisation/prjava/src/io/FileUtil.java
deleted file mode 100644
index 6720d087..00000000
--- a/gi/posterior-regularisation/prjava/src/io/FileUtil.java
+++ /dev/null
@@ -1,48 +0,0 @@
-package io;

-import java.util.*;

-import java.util.zip.GZIPInputStream;

-import java.util.zip.GZIPOutputStream;

-import java.io.*;

-public class FileUtil 

-{

-	public static BufferedReader reader(File file) throws FileNotFoundException, IOException

-	{

-		if (file.getName().endsWith(".gz"))

-			return new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream(file)), "UTF8"));

-		else

-			return new BufferedReader(new InputStreamReader(new FileInputStream(file), "UTF8"));

-	}

-	

-	public static PrintStream printstream(File file) throws FileNotFoundException, IOException

-	{

-		if (file.getName().endsWith(".gz"))

-			return new PrintStream(new GZIPOutputStream(new FileOutputStream(file)), true, "UTF8");

-		else

-			return new PrintStream(new FileOutputStream(file), true, "UTF8");

-	}

-

-	public static Scanner openInFile(String filename)

-	{

-		Scanner localsc=null;

-		try

-		{

-			localsc=new Scanner(new FileInputStream(filename), "UTF8");

-

-		}catch(IOException ioe){

-			System.out.println(ioe.getMessage());

-		}

-		return localsc;

-	}

-	

-	public static FileInputStream openInputStream(String infilename)

-	{

-		FileInputStream fis=null;

-		try {

-			fis = new FileInputStream(infilename);

-			

-		} catch (IOException ioe) {

-			System.out.println(ioe.getMessage());

-		}

-		return fis;

-	}

-}

diff --git a/gi/posterior-regularisation/prjava/src/io/SerializedObjects.java b/gi/posterior-regularisation/prjava/src/io/SerializedObjects.java
deleted file mode 100644
index d1631b51..00000000
--- a/gi/posterior-regularisation/prjava/src/io/SerializedObjects.java
+++ /dev/null
@@ -1,83 +0,0 @@
-package io;
-
-
-
-import java.io.BufferedInputStream;
-import java.io.BufferedOutputStream;
-import java.io.FileInputStream;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.ObjectInput;
-import java.io.ObjectInputStream;
-import java.io.ObjectOutput;
-import java.io.ObjectOutputStream;
-import java.io.OutputStream;
-
-public class SerializedObjects
-{
-	public static void writeSerializedObject(Object object, String outFile)
-	{
-		ObjectOutput output = null;
-	    try{
-	      //use buffering
-	      OutputStream file = new FileOutputStream(outFile);
-	      OutputStream buffer = new BufferedOutputStream( file );
-	      output = new ObjectOutputStream( buffer );
-	      output.writeObject(object);
-	      buffer.close();
-	      file.close();
-	    }
-	    catch(IOException ex){
-	    	ex.printStackTrace();
-	    }
-	    finally{
-	      try {
-	        if (output != null) {
-	          //flush and close "output" and its underlying streams
-	          output.close();
-	        }
-	      }
-	      catch (IOException ex ){
-	    	  ex.printStackTrace();
-	      }
-	    }
-	}
-	
-	public static Object readSerializedObject(String inputFile)
-	{
-		ObjectInput input = null;
-	    Object recoveredObject=null;
-		try{
-	      //use buffering
-	      InputStream file = new FileInputStream(inputFile);
-	      InputStream buffer = new BufferedInputStream(file);
-	      input = new ObjectInputStream(buffer);
-	      //deserialize the List
-	      recoveredObject = input.readObject();
-	    }
-	    catch(IOException ex){
-	    	ex.printStackTrace();
-	    }
-	    catch (ClassNotFoundException ex){
-	    	ex.printStackTrace();
-	    }
-	    catch(Exception ex)
-	    {
-	    	ex.printStackTrace();
-	    }
-	    finally{
-	      try {
-	        if ( input != null ) {
-	          //close "input" and its underlying streams
-	          input.close();
-	        }
-	      }
-	      catch (IOException ex){
-	    	  ex.printStackTrace();
-	      }
-	    }
-	    return recoveredObject;
-	 }
-	
-}
\ No newline at end of file