From a53461650fbdcd3cfe7543d28af9647ac3e5e47e Mon Sep 17 00:00:00 2001 From: redpony Date: Wed, 11 Aug 2010 02:37:10 +0000 Subject: major refactor, break bad circular deps git-svn-id: https://ws10smt.googlecode.com/svn/trunk@509 ec762483-ff6d-05da-a07a-a48fb63a330f --- utils/alignment_pharaoh.cc | 77 ++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 77 insertions(+) create mode 100644 utils/alignment_pharaoh.cc (limited to 'utils/alignment_pharaoh.cc') diff --git a/utils/alignment_pharaoh.cc b/utils/alignment_pharaoh.cc new file mode 100644 index 00000000..890ff565 --- /dev/null +++ b/utils/alignment_pharaoh.cc @@ -0,0 +1,77 @@ +#include "utils/alignment_pharaoh.h" + +#include + +using namespace std; + +static bool is_digit(char x) { return x >= '0' && x <= '9'; } + +boost::shared_ptr > AlignmentPharaoh::ReadPharaohAlignmentGrid(const string& al) { + int max_x = 0; + int max_y = 0; + int i = 0; + size_t pos = al.rfind(" ||| "); + if (pos != string::npos) { i = pos + 5; } + while (i < al.size()) { + if (al[i] == '\n' || al[i] == '\r') break; + int x = 0; + while(i < al.size() && is_digit(al[i])) { + x *= 10; + x += al[i] - '0'; + ++i; + } + if (x > max_x) max_x = x; + assert(i < al.size()); + if(al[i] != '-') { + cerr << "BAD ALIGNMENT: " << al << endl; + abort(); + } + ++i; + int y = 0; + while(i < al.size() && is_digit(al[i])) { + y *= 10; + y += al[i] - '0'; + ++i; + } + if (y > max_y) max_y = y; + while(i < al.size() && al[i] == ' ') { ++i; } + } + + boost::shared_ptr > grid(new Array2D(max_x + 1, max_y + 1)); + i = 0; + if (pos != string::npos) { i = pos + 5; } + while (i < al.size()) { + if (al[i] == '\n' || al[i] == '\r') break; + int x = 0; + while(i < al.size() && is_digit(al[i])) { + x *= 10; + x += al[i] - '0'; + ++i; + } + assert(i < al.size()); + assert(al[i] == '-'); + ++i; + int y = 0; + while(i < al.size() && is_digit(al[i])) { + y *= 10; + y += al[i] - '0'; + ++i; + } + (*grid)(x, y) = true; + while(i < al.size() && al[i] == ' ') { ++i; } + } + // cerr << *grid << endl; + return grid; +} + +void AlignmentPharaoh::SerializePharaohFormat(const Array2D& alignment, ostream* out) { + bool need_space = false; + for (int i = 0; i < alignment.width(); ++i) + for (int j = 0; j < alignment.height(); ++j) + if (alignment(i,j)) { + if (need_space) (*out) << ' '; else need_space = true; + (*out) << i << '-' << j; + } + (*out) << endl; +} + -- cgit v1.2.3