From 08f1814923005f702300d661c4d67f4635fc901c Mon Sep 17 00:00:00 2001
From: Guest_account Guest_account prguest11 <prguest11@taipan.cs>
Date: Thu, 15 Sep 2011 12:52:59 +0100
Subject: script to filter reachable sentences, weight cleanup

---
 training/Makefile.am              |  10 +-
 training/cllh_filter_grammar.cc   | 197 --------------------------------------
 training/mpi_extract_reachable.cc | 163 +++++++++++++++++++++++++++++++
 3 files changed, 168 insertions(+), 202 deletions(-)
 delete mode 100644 training/cllh_filter_grammar.cc
 create mode 100644 training/mpi_extract_reachable.cc

(limited to 'training')

diff --git a/training/Makefile.am b/training/Makefile.am
index 7ceeda34..5752859e 100644
--- a/training/Makefile.am
+++ b/training/Makefile.am
@@ -9,9 +9,9 @@ bin_PROGRAMS = \
   atools \
   plftools \
   collapse_weights \
-  cllh_filter_grammar \
-  mpi_online_optimize \
+  mpi_extract_reachable \
   mpi_extract_features \
+  mpi_online_optimize \
   mpi_batch_optimize \
   compute_cllh \
   augment_grammar
@@ -25,6 +25,9 @@ TESTS = lbfgs_test optimize_test
 mpi_online_optimize_SOURCES = mpi_online_optimize.cc online_optimizer.cc
 mpi_online_optimize_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a ../klm/lm/libklm.a ../klm/util/libklm_util.a -lz
 
+mpi_extract_reachable_SOURCES = mpi_extract_reachable.cc
+mpi_extract_reachable_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a ../klm/lm/libklm.a ../klm/util/libklm_util.a -lz
+
 mpi_extract_features_SOURCES = mpi_extract_features.cc
 mpi_extract_features_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a ../klm/lm/libklm.a ../klm/util/libklm_util.a -lz
 
@@ -34,9 +37,6 @@ mpi_batch_optimize_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/
 compute_cllh_SOURCES = compute_cllh.cc
 compute_cllh_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a ../klm/lm/libklm.a ../klm/util/libklm_util.a -lz
 
-cllh_filter_grammar_SOURCES = cllh_filter_grammar.cc
-cllh_filter_grammar_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a ../klm/lm/libklm.a ../klm/util/libklm_util.a -lz
-
 augment_grammar_SOURCES = augment_grammar.cc
 augment_grammar_LDADD = $(top_srcdir)/decoder/libcdec.a $(top_srcdir)/mteval/libmteval.a $(top_srcdir)/utils/libutils.a ../klm/lm/libklm.a ../klm/util/libklm_util.a -lz
 
diff --git a/training/cllh_filter_grammar.cc b/training/cllh_filter_grammar.cc
deleted file mode 100644
index 6998ec2b..00000000
--- a/training/cllh_filter_grammar.cc
+++ /dev/null
@@ -1,197 +0,0 @@
-#include <iostream>
-#include <vector>
-#include <cassert>
-#include <unistd.h>   // fork
-#include <sys/wait.h> // waitpid
-
-#include <boost/program_options.hpp>
-#include <boost/program_options/variables_map.hpp>
-
-#include "tdict.h"
-#include "ff_register.h"
-#include "verbose.h"
-#include "hg.h"
-#include "decoder.h"
-#include "filelib.h"
-
-using namespace std;
-namespace po = boost::program_options;
-
-void InitCommandLine(int argc, char** argv, po::variables_map* conf) {
-  po::options_description opts("Configuration options");
-  opts.add_options()
-        ("training_data,t",po::value<string>(),"Training data corpus")
-        ("decoder_config,c",po::value<string>(),"Decoder configuration file")
-        ("shards,s",po::value<unsigned>()->default_value(1),"Number of shards")
-        ("starting_shard,S",po::value<unsigned>()->default_value(0), "In this invocation only process shards >= S")
-        ("work_limit,l",po::value<unsigned>()->default_value(9999), "Process maximially this many shards")
-        ("ncpus,C",po::value<unsigned>()->default_value(1),"Number of CPUs to use");
-  po::options_description clo("Command line options");
-  clo.add_options()
-        ("config", po::value<string>(), "Configuration file")
-        ("help,h", "Print this help message and exit");
-  po::options_description dconfig_options, dcmdline_options;
-  dconfig_options.add(opts);
-  dcmdline_options.add(opts).add(clo);
-  
-  po::store(parse_command_line(argc, argv, dcmdline_options), *conf);
-  if (conf->count("config")) {
-    ifstream config((*conf)["config"].as<string>().c_str());
-    po::store(po::parse_config_file(config, dconfig_options), *conf);
-  }
-  po::notify(*conf);
-
-  if (conf->count("help") || !conf->count("training_data") || !conf->count("decoder_config")) {
-    cerr << dcmdline_options << endl;
-    exit(1);
-  }
-}
-
-void ReadTrainingCorpus(const string& fname, int rank, int size, vector<string>* c, vector<int>* ids) {
-  ReadFile rf(fname);
-  istream& in = *rf.stream();
-  string line;
-  int lc = 0;
-  assert(size > 0);
-  assert(rank < size);
-  while(in) {
-    getline(in, line);
-    if (!in) break;
-    if (lc % size == rank) {
-      c->push_back(line);
-      ids->push_back(lc);
-    }
-    ++lc;
-  }
-}
-
-struct TrainingObserver : public DecoderObserver {
-  TrainingObserver() : s_lhs(-TD::Convert("S")), goal_lhs(-TD::Convert("Goal")) {}
-
-  void Reset() {
-    total_complete = 0;
-  } 
-
-  virtual void NotifyDecodingStart(const SentenceMetadata& smeta) {
-    state = 1;
-    used.clear();
-    failed = true;
-  }
-
-  virtual void NotifyTranslationForest(const SentenceMetadata& smeta, Hypergraph* hg) {
-    assert(state == 1);
-    for (int i = 0; i < hg->edges_.size(); ++i) {
-      const TRule* rule = hg->edges_[i].rule_.get();
-      if (rule->lhs_ == s_lhs || rule->lhs_ == goal_lhs)  // fragile hack to filter out glue rules
-        continue;
-      used.insert(rule);
-    }
-    state = 2;
-  }
-
-  virtual void NotifyAlignmentForest(const SentenceMetadata& smeta, Hypergraph* hg) {
-    assert(state == 2);
-    state = 3;
-  }
-
-  virtual void NotifyDecodingComplete(const SentenceMetadata& smeta) {
-    if (state == 3) {
-      failed = false;
-    } else {
-      failed = true;
-    }
-  }
-
-  set<const TRule*> used;
-
-  const int s_lhs;
-  const int goal_lhs;
-  bool failed;
-  int total_complete;
-  int state;
-};
-
-void work(const string& fname, int rank, int size, Decoder* decoder) {
-  cerr << "Worker " << rank << '/' << size << " starting.\n";
-  vector<string> corpus;
-  vector<int> ids;
-  ReadTrainingCorpus(fname, rank, size, &corpus, &ids);
-  assert(corpus.size() > 0);
-  assert(corpus.size() == ids.size());
-  cerr << "  " << rank << '/' << size << ": has " << corpus.size() << " sentences to process\n";
-  ostringstream oc; oc << "corpus." << rank << "_of_" << size;
-  WriteFile foc(oc.str());
-  ostringstream og; og << "grammar." << rank << "_of_" << size << ".gz";
-  WriteFile fog(og.str());
-
-  set<const TRule*> all_used;
-  TrainingObserver observer;
-  for (int i = 0; i < corpus.size(); ++i) {
-    const int sent_id = ids[i];
-    const string& input = corpus[i];
-    decoder->SetId(sent_id);
-    decoder->Decode(input, &observer);
-    if (observer.failed) {
-      // do nothing
-    } else {
-      (*foc.stream()) << input << endl;
-      for (set<const TRule*>::iterator it = observer.used.begin(); it != observer.used.end(); ++it) {
-        if (all_used.insert(*it).second)
-          (*fog.stream()) << **it << endl;
-      }
-    }
-  }
-}
-
-int main(int argc, char** argv) {
-  register_feature_functions();
-
-  po::variables_map conf;
-  InitCommandLine(argc, argv, &conf);
-  const string fname = conf["training_data"].as<string>();
-  const unsigned ncpus = conf["ncpus"].as<unsigned>();
-  const unsigned shards = conf["shards"].as<unsigned>();
-  const unsigned start = conf["starting_shard"].as<unsigned>();
-  const unsigned work_limit = conf["work_limit"].as<unsigned>();
-  const unsigned eff_shards = min(start + work_limit, shards);
-  cerr << "Processing shards " << start << "/" << shards << " to " << eff_shards << "/" << shards << endl;
-  assert(ncpus > 0);
-  ReadFile ini_rf(conf["decoder_config"].as<string>());
-  Decoder decoder(ini_rf.stream());
-  if (decoder.GetConf()["input"].as<string>() != "-") {
-    cerr << "cdec.ini must not set an input file\n";
-    abort();
-  }
-  SetSilent(true);  // turn off verbose decoder output
-  cerr << "Forking " << ncpus << " time(s)\n";
-  vector<pid_t> children;
-  for (int i = 0; i < ncpus; ++i) {
-    pid_t pid = fork();
-    if (pid < 0) {
-      cerr << "Fork failed!\n";
-      exit(1);
-    }
-    if (pid > 0) {
-      children.push_back(pid);
-    } else {
-      for (int j = start; j < eff_shards; ++j) {
-        if (j % ncpus == i) {
-          cerr << "  CPU " << i << " processing shard " << j << endl;
-          work(fname, j, shards, &decoder);
-          cerr << "  Shard " << j << "/" << shards << " finished.\n";
-        }
-      }
-      _exit(0);
-    }
-  }
-  for (int i = 0; i < children.size(); ++i) {
-    int status;
-    int w = waitpid(children[i], &status, 0);
-    if (w < 0) { cerr << "Error while waiting for children!"; return 1; }
-    if (WIFSIGNALED(status)) {
-      cerr << "Child " << i << " received signal " << WTERMSIG(status) << endl;
-      if (WTERMSIG(status) == 11) { cerr << " this is a SEGV- you may be trying to print temporarily created rules\n"; }
-    }
-  }
-  return 0;
-}
diff --git a/training/mpi_extract_reachable.cc b/training/mpi_extract_reachable.cc
new file mode 100644
index 00000000..2a7c2b9d
--- /dev/null
+++ b/training/mpi_extract_reachable.cc
@@ -0,0 +1,163 @@
+#include <iostream>
+#include <sstream>
+#include <vector>
+#include <cassert>
+
+#include "config.h"
+#ifdef HAVE_MPI
+#include <boost/mpi.hpp>
+#endif
+#include <boost/program_options.hpp>
+#include <boost/program_options/variables_map.hpp>
+
+#include "ff_register.h"
+#include "verbose.h"
+#include "filelib.h"
+#include "fdict.h"
+#include "decoder.h"
+#include "weights.h"
+
+using namespace std;
+namespace po = boost::program_options;
+
+bool InitCommandLine(int argc, char** argv, po::variables_map* conf) {
+  po::options_description opts("Configuration options");
+  opts.add_options()
+        ("training_data,t",po::value<string>(),"Training data corpus")
+        ("decoder_config,c",po::value<string>(),"Decoder configuration file")
+        ("weights,w", po::value<string>(), "(Optional) weights file; weights may affect what features are encountered in pruning configurations")
+        ("output_prefix,o",po::value<string>()->default_value("reachable"),"Output path prefix");
+  po::options_description clo("Command line options");
+  clo.add_options()
+        ("config", po::value<string>(), "Configuration file")
+        ("help,h", "Print this help message and exit");
+  po::options_description dconfig_options, dcmdline_options;
+  dconfig_options.add(opts);
+  dcmdline_options.add(opts).add(clo);
+  
+  po::store(parse_command_line(argc, argv, dcmdline_options), *conf);
+  if (conf->count("config")) {
+    ifstream config((*conf)["config"].as<string>().c_str());
+    po::store(po::parse_config_file(config, dconfig_options), *conf);
+  }
+  po::notify(*conf);
+
+  if (conf->count("help") || !conf->count("training_data") || !conf->count("decoder_config")) {
+    cerr << "Decode an input set (optionally in parallel using MPI) and write\nout the inputs that produce reachable parallel parses.\n";
+    cerr << dcmdline_options << endl;
+    return false;
+  }
+  return true;
+}
+
+void ReadTrainingCorpus(const string& fname, int rank, int size, vector<string>* c) {
+  ReadFile rf(fname);
+  istream& in = *rf.stream();
+  string line;
+  int lc = 0;
+  while(in) {
+    getline(in, line);
+    if (!in) break;
+    if (lc % size == rank) c->push_back(line);
+    ++lc;
+  }
+}
+
+static const double kMINUS_EPSILON = -1e-6;
+
+struct ReachabilityObserver : public DecoderObserver {
+
+  virtual void NotifyDecodingStart(const SentenceMetadata&) {
+    reachable = false;
+  }
+
+  // compute model expectations, denominator of objective
+  virtual void NotifyTranslationForest(const SentenceMetadata&, Hypergraph* hg) {
+  }
+
+  // compute "empirical" expectations, numerator of objective
+  virtual void NotifyAlignmentForest(const SentenceMetadata& smeta, Hypergraph* hg) {
+    reachable = true;
+  }
+
+  bool reachable;
+};
+
+#ifdef HAVE_MPI
+namespace mpi = boost::mpi;
+#endif
+
+int main(int argc, char** argv) {
+#ifdef HAVE_MPI
+  mpi::environment env(argc, argv);
+  mpi::communicator world;
+  const int size = world.size(); 
+  const int rank = world.rank();
+#else
+  const int size = 1;
+  const int rank = 0;
+#endif
+  if (size > 1) SetSilent(true);  // turn off verbose decoder output
+  register_feature_functions();
+
+  po::variables_map conf;
+  if (!InitCommandLine(argc, argv, &conf))
+    return false;
+
+  // load cdec.ini and set up decoder
+  ReadFile ini_rf(conf["decoder_config"].as<string>());
+  Decoder decoder(ini_rf.stream());
+  if (decoder.GetConf()["input"].as<string>() != "-") {
+    cerr << "cdec.ini must not set an input file\n";
+    abort();
+  }
+
+  if (FD::UsingPerfectHashFunction()) {
+    cerr << "Your configuration file has enabled a cmph hash function. Please disable.\n";
+    return 1;
+  }
+
+  // load optional weights
+  if (conf.count("weights"))
+    Weights::InitFromFile(conf["weights"].as<string>(), &decoder.CurrentWeightVector());
+
+  vector<string> corpus;
+  ReadTrainingCorpus(conf["training_data"].as<string>(), rank, size, &corpus);
+  assert(corpus.size() > 0);
+
+
+  if (rank == 0)
+    cerr << "Each processor is decoding ~" << corpus.size() << " training examples...\n";
+
+  size_t num_reached = 0;
+  {
+    ostringstream os;
+    os << conf["output_prefix"].as<string>() << '.' << rank << "_of_" << size;
+    WriteFile wf(os.str());
+    ostream& out = *wf.stream();
+    ReachabilityObserver observer;
+    for (int i = 0; i < corpus.size(); ++i) {
+      decoder.Decode(corpus[i], &observer);
+      if (observer.reachable) {
+         out << corpus[i] << endl;
+         ++num_reached;
+      }
+      corpus[i].clear();
+    }
+    cerr << "Shard " << rank << '/' << size << " finished, wrote "
+         << num_reached << " instances to " << os.str() << endl;
+  }
+
+  size_t total = 0;
+#ifdef HAVE_MPI
+  reduce(world, num_reached, total, std::plus<double>(), 0);
+#else
+  total = num_reached;
+#endif
+  if (rank == 0) {
+    cerr << "-----------------------------------------\n";
+    cerr << "TOTAL = " << total << " instances\n";
+  }
+  return 0;
+}
+
-- 
cgit v1.2.3