From 21a4b6629fedae575583f0d1e34c97dba8de2511 Mon Sep 17 00:00:00 2001 From: Chris Dyer Date: Fri, 10 Feb 2012 13:17:12 -0500 Subject: clean up alignment tools --- training/atools.cc | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) (limited to 'training') diff --git a/training/atools.cc b/training/atools.cc index 42579627..82e30c38 100644 --- a/training/atools.cc +++ b/training/atools.cc @@ -8,7 +8,6 @@ #include #include "filelib.h" -#include "aligner.h" #include "alignment_pharaoh.h" namespace po = boost::program_options; @@ -79,7 +78,7 @@ struct FMeasureCommand : public Command { struct DisplayCommand : public Command { string Name() const { return "display"; } bool RequiresTwoOperands() const { return false; } - void Apply(const Array2D& in, const Array2D¬_used, Array2D* x) { + void Apply(const Array2D& in, const Array2D&, Array2D* x) { *x = in; cout << *x << endl; } @@ -88,7 +87,7 @@ struct DisplayCommand : public Command { struct ConvertCommand : public Command { string Name() const { return "convert"; } bool RequiresTwoOperands() const { return false; } - void Apply(const Array2D& in, const Array2D¬_used, Array2D* x) { + void Apply(const Array2D& in, const Array2D&, Array2D* x) { *x = in; } }; @@ -96,7 +95,7 @@ struct ConvertCommand : public Command { struct InvertCommand : public Command { string Name() const { return "invert"; } bool RequiresTwoOperands() const { return false; } - void Apply(const Array2D& in, const Array2D¬_used, Array2D* x) { + void Apply(const Array2D& in, const Array2D&, Array2D* x) { Array2D& res = *x; res.resize(in.height(), in.width()); for (int i = 0; i < in.height(); ++i) @@ -275,8 +274,8 @@ void InitCommandLine(int argc, char** argv, po::variables_map* conf) { } string cstr = os.str(); opts.add_options() - ("input_1,i", po::value(), "[REQ] Alignment 1 file, - for STDIN") - ("input_2,j", po::value(), "[OPT] Alignment 2 file, - for STDIN") + ("input_1,i", po::value(), "[REQUIRED] Alignment 1 file, - for STDIN") + ("input_2,j", po::value(), "Alignment 2 file, - for STDIN") ("command,c", po::value()->default_value("convert"), cstr.c_str()) ("help,h", "Print this help message and exit"); po::options_description clo("Command line options"); -- cgit v1.2.3