From ca9b58716214148eeaeaa3076e1a1dc8f8bb5892 Mon Sep 17 00:00:00 2001 From: Victor Chahuneau Date: Mon, 26 Aug 2013 20:12:32 -0400 Subject: Improve the package structure of pycdec This change should not break anything, but now you can run: python setup.py build_ext --inplace and use the cleaner: PYTHONPATH=/path/to/cdec/python python -m ... --- python/cdec/sa/_sa.pyx | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 python/cdec/sa/_sa.pyx (limited to 'python/cdec/sa/_sa.pyx') diff --git a/python/cdec/sa/_sa.pyx b/python/cdec/sa/_sa.pyx new file mode 100644 index 00000000..4716d174 --- /dev/null +++ b/python/cdec/sa/_sa.pyx @@ -0,0 +1,30 @@ +import logging +import resource +import gzip + +def monitor_cpu(): + return (resource.getrusage(resource.RUSAGE_SELF).ru_utime+ + resource.getrusage(resource.RUSAGE_SELF).ru_stime) + +def gzip_or_text(char* filename): + if filename.endswith('.gz'): + return gzip.GzipFile(filename) + else: + return open(filename) + +logger = logging.getLogger('cdec.sa') + +include "float_list.pxi" +include "int_list.pxi" +include "str_map.pxi" +include "data_array.pxi" +include "alignment.pxi" +include "bilex.pxi" +include "veb.pxi" +include "lcp.pxi" +include "sym.pxi" +include "rule.pxi" +include "precomputation.pxi" +include "suffix_array.pxi" +include "rulefactory.pxi" +include "features.pxi" -- cgit v1.2.3