From f4cf81a5173ae4eb937649a233d0929c8d5a641a Mon Sep 17 00:00:00 2001
From: redpony <redpony@ec762483-ff6d-05da-a07a-a48fb63a330f>
Date: Sat, 18 Sep 2010 19:01:50 +0000
Subject: start refactoring of decoder

git-svn-id: https://ws10smt.googlecode.com/svn/trunk@647 ec762483-ff6d-05da-a07a-a48fb63a330f
---
 decoder/Makefile.am   |   1 +
 decoder/cdec.cc       |   1 +
 decoder/cfg_options.h |   1 +
 decoder/decoder.cc    | 228 ++++++++++++++++++++++++++++++++++++++++++++++++++
 decoder/decoder.h     |  22 +++++
 5 files changed, 253 insertions(+)
 create mode 100644 decoder/decoder.cc
 create mode 100644 decoder/decoder.h

diff --git a/decoder/Makefile.am b/decoder/Makefile.am
index 0c434665..825e7a59 100644
--- a/decoder/Makefile.am
+++ b/decoder/Makefile.am
@@ -43,6 +43,7 @@ libcdec_a_SOURCES = \
   scfg_translator.cc \
   hg.cc \
   hg_io.cc \
+  decoder.cc \
   hg_intersect.cc \
   viterbi.cc \
   lattice.cc \
diff --git a/decoder/cdec.cc b/decoder/cdec.cc
index f7b06aa4..56e103aa 100644
--- a/decoder/cdec.cc
+++ b/decoder/cdec.cc
@@ -7,6 +7,7 @@
 #include <boost/program_options.hpp>
 #include <boost/program_options/variables_map.hpp>
 
+#include "decoder.h"
 #include "oracle_bleu.h"
 #include "timing_stats.h"
 #include "translator.h"
diff --git a/decoder/cfg_options.h b/decoder/cfg_options.h
index 00641a80..7b59c05c 100755
--- a/decoder/cfg_options.h
+++ b/decoder/cfg_options.h
@@ -1,6 +1,7 @@
 #ifndef CFG_OPTIONS_H
 #define CFG_OPTIONS_H
 
+#include "filelib.h"
 #include "hg_cfg.h"
 #include "cfg_format.h"
 #include "cfg_binarize.h"
diff --git a/decoder/decoder.cc b/decoder/decoder.cc
new file mode 100644
index 00000000..196ffa46
--- /dev/null
+++ b/decoder/decoder.cc
@@ -0,0 +1,228 @@
+#include "decoder.h"
+
+#include <boost/program_options.hpp>
+#include <boost/program_options/variables_map.hpp>
+
+#include "ff_factory.h"
+#include "cfg_options.h"
+#include "stringlib.h"
+#include "hg.h"
+
+using namespace std;
+using boost::shared_ptr;
+namespace po = boost::program_options;
+
+inline void ShowBanner() {
+  cerr << "cdec v1.0 (c) 2009-2010 by Chris Dyer\n";
+}
+
+inline string str(char const* name,po::variables_map const& conf) {
+  return conf[name].as<string>();
+}
+
+// print just the --long_opt names suitable for bash compgen
+inline void print_options(std::ostream &out,po::options_description const& opts) {
+  typedef std::vector< shared_ptr<po::option_description> > Ds;
+  Ds const& ds=opts.options();
+  out << '"';
+  for (unsigned i=0;i<ds.size();++i) {
+    if (i) out<<' ';
+    out<<"--"<<ds[i]->long_name();
+  }
+  out << '"';
+}
+
+struct DecoderImpl {
+  DecoderImpl(int argc, char** argv, istream* cfg);
+  bool Decode(const string& input) {
+    return false;
+  }
+  bool DecodeProduceHypergraph(const string& input, Hypergraph* hg) {
+    return false;
+  }
+  void SetWeights(const vector<double>& weights) {
+  }
+
+  po::variables_map conf;
+  CFGOptions cfg_options;
+};
+
+DecoderImpl::DecoderImpl(int argc, char** argv, istream* cfg) {
+  if (cfg) { if (argc || argv) { cerr << "DecoderImpl() can only take a file or command line options, not both\n"; exit(1); } }
+  bool show_config;
+  bool show_weights;
+  vector<string> cfg_files;
+
+  po::options_description opts("Configuration options");
+  opts.add_options()
+        ("formalism,f",po::value<string>(),"Decoding formalism; values include SCFG, FST, PB, LexTrans (lexical translation model, also disc training), CSplit (compound splitting), Tagger (sequence labeling), LexAlign (alignment only, or EM training)")
+        ("input,i",po::value<string>()->default_value("-"),"Source file")
+        ("grammar,g",po::value<vector<string> >()->composing(),"Either SCFG grammar file(s) or phrase tables file(s)")
+        ("weights,w",po::value<string>(),"Feature weights file")
+    ("prelm_weights",po::value<string>(),"Feature weights file for prelm_beam_prune.  Requires --weights.")
+    ("prelm_copy_weights","use --weights as value for --prelm_weights.")
+    ("prelm_feature_function",po::value<vector<string> >()->composing(),"Additional feature functions for prelm pass only (in addition to the 0-state subset of feature_function")
+    ("keep_prelm_cube_order","DEPRECATED (always enabled).  when forest rescoring with final models, use the edge ordering from the prelm pruning features*weights.  only meaningful if --prelm_weights given.  UNTESTED but assume that cube pruning gives a sensible result, and that 'good' (as tuned for bleu w/ prelm features) edges come first.")
+    ("warn_0_weight","Warn about any feature id that has a 0 weight (this is perfectly safe if you intend 0 weight, though)")
+        ("no_freeze_feature_set,Z", "Do not freeze feature set after reading feature weights file")
+        ("feature_function,F",po::value<vector<string> >()->composing(), "Additional feature function(s) (-L for list)")
+        ("fsa_feature_function,A",po::value<vector<string> >()->composing(), "Additional FSA feature function(s) (-L for list)")
+    ("apply_fsa_by",po::value<string>()->default_value("BU_CUBE"), "Method for applying fsa_feature_functions - BU_FULL BU_CUBE EARLEY") //+ApplyFsaBy::all_names()
+        ("list_feature_functions,L","List available feature functions")
+        ("add_pass_through_rules,P","Add rules to translate OOV words as themselves")
+	("k_best,k",po::value<int>(),"Extract the k best derivations")
+	("unique_k_best,r", "Unique k-best translation list")
+        ("aligner,a", "Run as a word/phrase aligner (src & ref required)")
+        ("intersection_strategy,I",po::value<string>()->default_value("cube_pruning"), "Intersection strategy for incorporating finite-state features; values include Cube_pruning, Full")
+        ("cubepruning_pop_limit,K",po::value<int>()->default_value(200), "Max number of pops from the candidate heap at each node")
+        ("goal",po::value<string>()->default_value("S"),"Goal symbol (SCFG & FST)")
+        ("scfg_extra_glue_grammar", po::value<string>(), "Extra glue grammar file (Glue grammars apply when i=0 but have no other span restrictions)")
+        ("scfg_no_hiero_glue_grammar,n", "No Hiero glue grammar (nb. by default the SCFG decoder adds Hiero glue rules)")
+        ("scfg_default_nt,d",po::value<string>()->default_value("X"),"Default non-terminal symbol in SCFG")
+        ("scfg_max_span_limit,S",po::value<int>()->default_value(10),"Maximum non-terminal span limit (except \"glue\" grammar)")
+    ("show_config", po::bool_switch(&show_config), "show contents of loaded -c config files.")
+    ("show_weights", po::bool_switch(&show_weights), "show effective feature weights")
+        ("show_joshua_visualization,J", "Produce output compatible with the Joshua visualization tools")
+        ("show_tree_structure", "Show the Viterbi derivation structure")
+        ("show_expected_length", "Show the expected translation length under the model")
+        ("show_partition,z", "Compute and show the partition (inside score)")
+        ("show_cfg_search_space", "Show the search space as a CFG")
+    ("show_features","Show the feature vector for the viterbi translation")
+    ("prelm_density_prune", po::value<double>(), "Applied to -LM forest just before final LM rescoring: keep no more than this many times the number of edges used in the best derivation tree (>=1.0)")
+    ("density_prune", po::value<double>(), "Keep no more than this many times the number of edges used in the best derivation tree (>=1.0)")
+        ("prelm_beam_prune", po::value<double>(), "Prune paths from -LM forest before LM rescoring, keeping paths within exp(alpha>=0)")
+        ("coarse_to_fine_beam_prune", po::value<double>(), "Prune paths from coarse parse forest before fine parse, keeping paths within exp(alpha>=0)")
+        ("ctf_beam_widen", po::value<double>()->default_value(2.0), "Expand coarse pass beam by this factor if no fine parse is found")
+        ("ctf_num_widenings", po::value<int>()->default_value(2), "Widen coarse beam this many times before backing off to full parse")
+        ("ctf_no_exhaustive", "Do not fall back to exhaustive parse if coarse-to-fine parsing fails")
+        ("beam_prune", po::value<double>(), "Prune paths from +LM forest, keep paths within exp(alpha>=0)")
+    ("scale_prune_srclen", "scale beams by the input length (in # of tokens; may not be what you want for lattices")
+    ("promise_power",po::value<double>()->default_value(0), "Give more beam budget to more promising previous-pass nodes when pruning - but allocate the same average beams.  0 means off, 1 means beam proportional to inside*outside prob, n means nth power (affects just --cubepruning_pop_limit).  note: for the same pop_limit, this gives more search error unless very close to 0 (recommend disabled; even 0.01 is slightly worse than 0) which is a bad sign and suggests this isn't doing a good job; further it's slightly slower to LM cube rescore with 0.01 compared to 0, as well as giving (very insignificantly) lower BLEU.  TODO: test under more conditions, or try idea with different formula, or prob. cube beams.")
+        ("lexalign_use_null", "Support source-side null words in lexical translation")
+        ("tagger_tagset,t", po::value<string>(), "(Tagger) file containing tag set")
+        ("csplit_output_plf", "(Compound splitter) Output lattice in PLF format")
+        ("csplit_preserve_full_word", "(Compound splitter) Always include the unsegmented form in the output lattice")
+        ("extract_rules", po::value<string>(), "Extract the rules used in translation (de-duped) to this file")
+        ("graphviz","Show (constrained) translation forest in GraphViz format")
+        ("max_translation_beam,x", po::value<int>(), "Beam approximation to get max translation from the chart")
+        ("max_translation_sample,X", po::value<int>(), "Sample the max translation from the chart")
+        ("pb_max_distortion,D", po::value<int>()->default_value(4), "Phrase-based decoder: maximum distortion")
+        ("cll_gradient,G","Compute conditional log-likelihood gradient and write to STDOUT (src & ref required)")
+        ("crf_uniform_empirical", "If there are multple references use (i.e., lattice) a uniform distribution rather than posterior weighting a la EM")
+    ("get_oracle_forest,o", "Calculate rescored hypregraph using approximate BLEU scoring of rules")
+    ("feature_expectations","Write feature expectations for all features in chart (**OBJ** will be the partition)")
+        ("vector_format",po::value<string>()->default_value("b64"), "Sparse vector serialization format for feature expectations or gradients, includes (text or b64)")
+        ("combine_size,C",po::value<int>()->default_value(1), "When option -G is used, process this many sentence pairs before writing the gradient (1=emit after every sentence pair)")
+        ("forest_output,O",po::value<string>(),"Directory to write forests to")
+        ("minimal_forests,m","Write minimal forests (excludes Rule information). Such forests can be used for ML/MAP training, but not rescoring, etc.");
+  // ob.AddOptions(&opts);
+  po::options_description cfgo(cfg_options.description());
+  cfg_options.AddOptions(&cfgo);
+  po::options_description clo("Command line options");
+  clo.add_options()
+    ("config,c", po::value<vector<string> >(&cfg_files), "Configuration file(s) - latest has priority")
+        ("help,h", "Print this help message and exit")
+    ("usage,u", po::value<string>(), "Describe a feature function type")
+    ("compgen", "Print just option names suitable for bash command line completion builtin 'compgen'")
+    ;
+
+  po::options_description dconfig_options, dcmdline_options;
+  dconfig_options.add(opts).add(cfgo);
+  //add(opts).add(cfgo)
+  dcmdline_options.add(dconfig_options).add(clo);
+  if (argc) {
+    argv_minus_to_underscore(argc,argv);
+    po::store(parse_command_line(argc, argv, dcmdline_options), conf);
+    if (conf.count("compgen")) {
+      print_options(cout,dcmdline_options);
+      cout << endl;
+      exit(0);
+    }
+    ShowBanner();
+  }
+  if (conf.count("show_config")) // special handling needed because we only want to notify() once.
+    show_config=true;
+  if (conf.count("config") || cfg) {
+    typedef vector<string> Cs;
+    Cs cs=conf["config"].as<Cs>();
+    for (int i=0;i<cs.size();++i) {
+      string cfg=cs[i];
+      cerr << "Configuration file: " << cfg << endl;
+      ReadFile conff(cfg);
+      po::store(po::parse_config_file(*conff, dconfig_options), conf);
+    }
+    if (cfg) po::store(po::parse_config_file(*cfg, dconfig_options), conf);
+  }
+  po::notify(conf);
+  if (show_config && !cfg_files.empty()) {
+    cerr<< "\nConfig files:\n\n";
+    for (int i=0;i<cfg_files.size();++i) {
+      string cfg=cfg_files[i];
+      cerr << "Configuration file: " << cfg << endl;
+      CopyFile(cfg,cerr);
+      cerr << "(end config "<<cfg<<"\n\n";
+    }
+    cerr <<"Command line:";
+    for (int i=0;i<argc;++i)
+      cerr<<" "<<argv[i];
+    cerr << "\n\n";
+  }
+
+
+  if (conf.count("list_feature_functions")) {
+    cerr << "Available feature functions (specify with -F; describe with -u FeatureName):\n";
+    // ff_registry.DisplayList(); //TODO
+    cerr << "Available FSA feature functions (specify with --fsa_feature_function):\n";
+   // fsa_ff_registry.DisplayList(); // TODO
+    cerr << endl;
+    exit(1);
+  }
+
+  if (conf.count("usage")) {
+    ff_usage(str("usage",conf));
+    exit(0);
+  }
+  if (conf.count("help")) {
+    cout << dcmdline_options << endl;
+    exit(0);
+  }
+  if (conf.count("help") || conf.count("formalism") == 0) {
+    cerr << dcmdline_options << endl;
+    exit(1);
+  }
+
+  const string formalism = LowercaseString(str("formalism",conf));
+  if (formalism != "scfg" && formalism != "fst" && formalism != "lextrans" && formalism != "pb" && formalism != "csplit" && formalism != "tagger" && formalism != "lexalign") {
+    cerr << "Error: --formalism takes only 'scfg', 'fst', 'pb', 'csplit', 'lextrans', 'lexalign', or 'tagger'\n";
+    cerr << dcmdline_options << endl;
+    exit(1);
+  }
+
+}
+
+Decoder::Decoder(istream* cfg) {
+  pimpl_.reset(new DecoderImpl(0,0,cfg));
+}
+
+Decoder::Decoder(int argc, char** argv) {
+  pimpl_.reset(new DecoderImpl(argc, argv, 0));
+}
+
+Decoder::~Decoder() {}
+
+bool Decoder::Decode(const string& input) {
+  return pimpl_->Decode(input);
+}
+
+bool Decoder::DecodeProduceHypergraph(const string& input, Hypergraph* hg) {
+  return pimpl_->DecodeProduceHypergraph(input, hg);
+}
+
+void Decoder::SetWeights(const vector<double>& weights) {
+  pimpl_->SetWeights(weights);
+}
+
+void InitCommandLine(int argc, char** argv, po::variables_map* confp) {
+  po::variables_map &conf=*confp;
+
+}
diff --git a/decoder/decoder.h b/decoder/decoder.h
new file mode 100644
index 00000000..ae1b9bb0
--- /dev/null
+++ b/decoder/decoder.h
@@ -0,0 +1,22 @@
+#ifndef _DECODER_H_
+#define _DECODER_H_
+
+#include <iostream>
+#include <string>
+#include <vector>
+#include <boost/shared_ptr.hpp>
+
+struct Hypergraph;
+struct DecoderImpl;
+struct Decoder {
+  Decoder(int argc, char** argv);
+  Decoder(std::istream* config_file);
+  bool Decode(const std::string& input);
+  bool DecodeProduceHypergraph(const std::string& input, Hypergraph* hg);
+  void SetWeights(const std::vector<double>& weights);
+  ~Decoder();
+ private:
+  boost::shared_ptr<DecoderImpl> pimpl_;
+};
+
+#endif
-- 
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