1 files changed, 83 insertions, 35 deletions

diff --git a/training/dtrain/parallelize.rb b/training/dtrain/parallelize.rb
index eb4148f5..9b0923f6 100755
--- a/training/dtrain/parallelize.rb
+++ b/training/dtrain/parallelize.rb
@@ -1,80 +1,128 @@
 #!/usr/bin/env ruby
 
 
-if ARGV.size != 5
+if ARGV.size != 7
   STDERR.write "Usage: "
-  STDERR.write "ruby parallelize.rb <#shards> <input> <refs> <epochs> <dtrain.ini>\n"
+  STDERR.write "ruby parallelize.rb <dtrain.ini> <epochs> <rand=true|false> <#shards|predef> <at once> <input> <refs> <qsub>\n"
   exit
 end
 
-cdec_dir   = '/path/to/cdec_dir'
-dtrain_bin = "#{cdec_dir}/training/dtrain/dtrain_local"
+dtrain_dir = File.expand_path File.dirname(__FILE__)
+dtrain_bin = "#{dtrain_dir}/dtrain"
 ruby       = '/usr/bin/ruby'
-lplp_rb    = "#{cdec_dir}/training/dtrain/hstreaming/lplp.rb"
+lplp_rb    = "#{dtrain_dir}/hstreaming/lplp.rb"
 lplp_args  = 'l2 select_k 100000'
-gzip       = '/bin/gzip'
-
-num_shards = ARGV[0].to_i
-input      = ARGV[1]
-refs       = ARGV[2]
-epochs     = ARGV[3].to_i
-ini        = ARGV[4]
+cat        = '/bin/cat'
 
+ini        = ARGV[0]
+epochs     = ARGV[1].to_i
+rand = false
+rand = true if ARGV[2]=='true'
+predefined_shards = false
+if ARGV[3] == 'predef'
+  predefined_shards = true
+  num_shards = -1
+else
+  num_shards = ARGV[3].to_i
+end
+shards_at_once = ARGV[4].to_i
+input = ARGV[5]
+refs  = ARGV[6]
+use_qsub   = false
+use_qsub = true if ARGV[7]
 
 `mkdir work`
 
-def make_shards(input, refs, num_shards)
+def make_shards(input, refs, num_shards, epoch, rand)
   lc = `wc -l #{input}`.split.first.to_i
+  index = (0..lc-1).to_a
+  index.reverse!
+  index.shuffle! if rand
   shard_sz = lc / num_shards
   leftover = lc % num_shards
   in_f = File.new input, 'r'
+  in_lines = in_f.readlines
   refs_f = File.new refs, 'r'
+  refs_lines = refs_f.readlines
   shard_in_files = []
   shard_refs_files = []
+  in_fns = []
+  refs_fns = []
   0.upto(num_shards-1) { |shard|
-    shard_in = File.new "work/shard.#{shard}.in", 'w+'
-    shard_refs = File.new "work/shard.#{shard}.refs", 'w+'
+    in_fn = "work/shard.#{shard}.#{epoch}.in"
+    shard_in = File.new in_fn, 'w+'
+    in_fns << in_fn
+    refs_fn = "work/shard.#{shard}.#{epoch}.refs"
+    shard_refs = File.new refs_fn, 'w+'
+    refs_fns << refs_fn
     0.upto(shard_sz-1) { |i|
-      shard_in.write in_f.gets
-      shard_refs.write refs_f.gets
+      j = index.pop 
+      shard_in.write in_lines[j]
+      shard_refs.write refs_lines[j]
     }
     shard_in_files << shard_in
     shard_refs_files << shard_refs
   }
   while leftover > 0
-    shard_in_files[-1].write in_f.gets
-    shard_refs_files[-1].write refs_f.gets
+    j = index.pop
+    shard_in_files[-1].write in_lines[j]
+    shard_refs_files[-1].write refs_lines[j]
     leftover -= 1
   end
   (shard_in_files + shard_refs_files).each do |f| f.close end
   in_f.close
   refs_f.close
+  return [in_fns, refs_fns]
 end
 
-make_shards input, refs, num_shards
+input_files = []
+refs_files = []
+if predefined_shards
+  input_files = File.new(input).readlines.map {|i| i.strip }
+  refs_files = File.new(refs).readlines.map {|i| i.strip }
+  num_shards = input_files.size
+else
+  input_files, refs_files = make_shards input, refs, num_shards, 0, rand
+end
 
 0.upto(epochs-1) { |epoch|
+  puts "epoch #{epoch+1}"
   pids = []
   input_weights = ''
   if epoch > 0 then input_weights = "--input_weights work/weights.#{epoch-1}" end
   weights_files = []
-  0.upto(num_shards-1) { |shard|
-    pids << Kernel.fork {
-      `#{dtrain_bin} -c #{ini}\
-        --input work/shard.#{shard}.in\
-        --refs work/shard.#{shard}.refs #{input_weights}\
-        --output work/weights.#{shard}.#{epoch}\
-        &> work/out.#{shard}.#{epoch}`
+  shard = 0
+  remaining_shards = num_shards
+  while remaining_shards > 0
+    shards_at_once.times {
+      qsub_str_start = qsub_str_end = ''
+      local_end = ''
+      if use_qsub
+        qsub_str_start = "qsub -cwd -sync y -b y -j y -o work/out.#{shard}.#{epoch} -N dtrain.#{shard}.#{epoch} \""
+        qsub_str_end = "\""
+        local_end = '' 
+      else
+        local_end = "&>work/out.#{shard}.#{epoch}"
+      end
+      pids << Kernel.fork {
+        `#{qsub_str_start}#{dtrain_bin} -c #{ini}\
+          --input #{input_files[shard]}\
+          --refs #{refs_files[shard]} #{input_weights}\
+          --output work/weights.#{shard}.#{epoch}#{qsub_str_end} #{local_end}`
+      }
+      weights_files << "work/weights.#{shard}.#{epoch}"
+      shard += 1
+      remaining_shards -= 1
     }
-    weights_files << "work/weights.#{shard}.#{epoch}"
-  }
-  pids.each { |pid| Process.wait(pid) }
-  cat = File.new('work/weights_cat', 'w+')
-  weights_files.each { |f| cat.write File.new(f, 'r').read }
-  cat.close
-  `#{ruby} #{lplp_rb} #{lplp_args} #{num_shards} < work/weights_cat &> work/weights.#{epoch}`
+    pids.each { |pid| Process.wait(pid) }
+    pids.clear
+  end
+  `#{cat} work/weights.*.#{epoch} > work/weights_cat`
+  `#{ruby} #{lplp_rb} #{lplp_args} #{num_shards} < work/weights_cat > work/weights.#{epoch}`
+  if rand and epoch+1!=epochs
+    input_files, refs_files = make_shards input, refs, num_shards, epoch+1, rand
+  end
 }
 
 `rm work/weights_cat`
-`#{gzip} work/*`