#ifndef _PHARAOH_ALIGNMENT_H_ #define _PHARAOH_ALIGNMENT_H_ #include <string> #include <iostream> #include <boost/shared_ptr.hpp> #include "array2d.h" struct AlignmentPharaoh { static boost::shared_ptr<Array2D<bool> > ReadPharaohAlignmentGrid(const std::string& al); static void SerializePharaohFormat(const Array2D<bool>& alignment, std::ostream* out); }; #endif