From 92ca6e23b39043ad026c07a5aab71ffc750c1db2 Mon Sep 17 00:00:00 2001
From: Jonathan Clark <jon.h.clark@gmail.com>
Date: Fri, 11 Mar 2011 10:22:31 -0500
Subject: just use grep and dont check return code

---
 vest/dist-vest.pl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'vest')

diff --git a/vest/dist-vest.pl b/vest/dist-vest.pl
index 6a5959dc..f95754dc 100755
--- a/vest/dist-vest.pl
+++ b/vest/dist-vest.pl
@@ -396,7 +396,7 @@ while (1){
 			print STDERR "Waiting for mappers to complete...\n";
 			while ($nmappers > 0) {
 			  sleep 5;
-			  my @livejobs = grep(/$joblist/, split(/\n/, check_output("qstat | awk '{if($0 !~ \" C \"){print}}'")));
+			  my @livejobs = grep(/$joblist/, split(/\n/, unchecked_output("qstat | grep -v ' C '")));
 			  $nmappers = scalar @livejobs;
 			}
 			print STDERR "All mappers complete.\n";
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