From 6b25a85dd45af5982e07577b33c64e3b577579c3 Mon Sep 17 00:00:00 2001
From: Jonathan Clark <jon.h.clark@gmail.com>
Date: Fri, 11 Mar 2011 10:27:43 -0500
Subject: dont fail on possibly temporary qstat errors

---
 vest/parallelize.pl | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'vest')

diff --git a/vest/parallelize.pl b/vest/parallelize.pl
index 2798a303..c2526503 100755
--- a/vest/parallelize.pl
+++ b/vest/parallelize.pl
@@ -283,7 +283,8 @@ sub numof_live_jobs {
   if ($use_fork) {
     die "not implemented";
   } else {
-    my @livejobs = grep(/$joblist/, split(/\n/, check_output("qstat")));
+    # We can probably continue decoding if the qstat error is only temporary
+    my @livejobs = grep(/$joblist/, split(/\n/, unchecked_output("qstat")));
     return ($#livejobs + 1);
   }
 }
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